LOCUS       DARGEM010000001        71013 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.001, whole genome shotgun sequence.
ACCESSION   DARGEM010000001 DARGEM010000000
VERSION     DARGEM010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 71013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 71013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..71013
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.001"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(139..276)
                     /locus_tag="SFZ78_000001"
     CDS             complement(139..276)
                     /locus_tag="SFZ78_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8210929.1"
                     /translation="MNLILENVSDDLAKVIKAMAKIENTKVKLKKEKKLTINGFNLSL
                     F"
     gene            complement(287..655)
                     /locus_tag="SFZ78_000002"
     CDS             complement(287..655)
                     /locus_tag="SFZ78_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEG8210930.1"
                     /translation="MKKDINYYLNLPYKINLVKLDDGDYFAQFDDKELNKLVLMAGDG
                     KTPNEAIEDLKNAFACYLEEALAKNEFIPEPIQKDKSKNLAITLKNSLVDEIDFYSKK
                     MGLSRSAFLAVSAKAYIKTL"
     gene            complement(652..879)
                     /locus_tag="SFZ78_000003"
     CDS             complement(652..879)
                     /locus_tag="SFZ78_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEG8210931.1"
                     /translation="MNNKEKLIKELENNPKNASFANIEKLLSWYGYKLVSIRGSHHKF
                     KKDNKSIIVPLHKPIKEFYVKQILKLLKDEK"
     gene            complement(998..1638)
                     /locus_tag="SFZ78_000004"
                     /pseudo
     CDS             complement(998..1638)
                     /locus_tag="SFZ78_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003012382.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1641..2780)
                     /locus_tag="SFZ78_000005"
     CDS             complement(1641..2780)
                     /locus_tag="SFZ78_000005"
                     /inference="COORDINATES: protein motif:HMM:NF012798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEG8210932.1"
                     /translation="MAIDRKDYNIPIGKGTHLKRHKDKINSFLFRMQNGGKEKQHAFT
                     IPLRPAWNENEYIRIALARAKEYENEFKKLFSVGYALNSSILIKNIFEIFIKTNYNIK
                     DLNEQHKGHIRNLISIFNNHILEPLGNIHLDELTLYKVQEFYNGMKNKGLEPKTYNRA
                     IKEVLSPMIRYAVKNKWINENVTLGLKLDRVQNKKLVTNPKGKYEAILNAILELYKDN
                     LLYKALFLLIHSGRRRDEVLSLLWQNVDLERKTIFLPKTKNGEAQEHALDDECYNALK
                     ALKDEVKQDKGLVFVSSVSGKKISNLARQEAKIRELSGVKEWTPHFSRHIKASFLMQN
                     GVNPAVISGALGHRDLSTINIYATNDTLKASQRANEALKKLQEKD"
     gene            complement(3078..3162)
                     /locus_tag="SFZ78_000006"
     tRNA            complement(3078..3162)
                     /locus_tag="SFZ78_000006"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3126..3128),aa:Leu,seq:tag)
     gene            complement(3167..3243)
                     /locus_tag="SFZ78_000007"
     tRNA            complement(3167..3243)
                     /locus_tag="SFZ78_000007"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3207..3209),aa:Arg,seq:tct)
     gene            complement(3258..3334)
                     /locus_tag="SFZ78_000008"
     tRNA            complement(3258..3334)
                     /locus_tag="SFZ78_000008"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3298..3300),aa:Arg,seq:tcg)
     gene            complement(3338..3414)
                     /locus_tag="SFZ78_000009"
     tRNA            complement(3338..3414)
                     /locus_tag="SFZ78_000009"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3378..3380),aa:His,seq:gtg)
     gene            complement(3439..3516)
                     /locus_tag="SFZ78_000010"
     tRNA            complement(3439..3516)
                     /locus_tag="SFZ78_000010"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3479..3481),aa:Pro,seq:tgg)
     gene            complement(3559..4407)
                     /locus_tag="SFZ78_000011"
     CDS             complement(3559..4407)
                     /locus_tag="SFZ78_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG8210933.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMIEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNVMKLKPHDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(4407..5069)
                     /gene="cgpA"
                     /locus_tag="SFZ78_000012"
     CDS             complement(4407..5069)
                     /gene="cgpA"
                     /locus_tag="SFZ78_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG8210934.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDHNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYIISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(5059..5262)
                     /locus_tag="SFZ78_000013"
     CDS             complement(5059..5262)
                     /locus_tag="SFZ78_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8210935.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(5328..6572)
                     /gene="eno"
                     /locus_tag="SFZ78_000014"
     CDS             complement(5328..6572)
                     /gene="eno"
                     /locus_tag="SFZ78_000014"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG8210936.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(6572..7603)
                     /gene="recA"
                     /locus_tag="SFZ78_000015"
     CDS             complement(6572..7603)
                     /gene="recA"
                     /locus_tag="SFZ78_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG8210937.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            7710..8570
                     /locus_tag="SFZ78_000016"
     CDS             7710..8570
                     /locus_tag="SFZ78_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG8210938.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDVIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            8582..8851
                     /gene="fliQ"
                     /locus_tag="SFZ78_000017"
     CDS             8582..8851
                     /gene="fliQ"
                     /locus_tag="SFZ78_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG8210939.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            8848..9624
                     /locus_tag="SFZ78_000018"
     CDS             8848..9624
                     /locus_tag="SFZ78_000018"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG8210940.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQIYDFDGFLIGGANNLLVSPK
                     PKNIGILGDSFDFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(9632..10396)
                     /locus_tag="SFZ78_000019"
     CDS             complement(9632..10396)
                     /locus_tag="SFZ78_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8210941.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
     gene            complement(10436..11200)
                     /locus_tag="SFZ78_000020"
     CDS             complement(10436..11200)
                     /locus_tag="SFZ78_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG8210942.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLSYKSNPFICVSSRNFLQDFL"
     gene            complement(11280..12548)
                     /locus_tag="SFZ78_000021"
     CDS             complement(11280..12548)
                     /locus_tag="SFZ78_000021"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG8210943.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(12663..13838)
                     /locus_tag="SFZ78_000022"
     CDS             complement(12663..13838)
                     /locus_tag="SFZ78_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8210944.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(13819..14655)
                     /locus_tag="SFZ78_000023"
     CDS             complement(13819..14655)
                     /locus_tag="SFZ78_000023"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG8210945.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLKYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(14657..16759)
                     /gene="topA"
                     /locus_tag="SFZ78_000024"
     CDS             complement(14657..16759)
                     /gene="topA"
                     /locus_tag="SFZ78_000024"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG8210946.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            16954..18225
                     /locus_tag="SFZ78_000025"
     CDS             16954..18225
                     /locus_tag="SFZ78_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8210947.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAIGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLTWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(18253..19518)
                     /gene="secY"
                     /locus_tag="SFZ78_000026"
     CDS             complement(18253..19518)
                     /gene="secY"
                     /locus_tag="SFZ78_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG8210948.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNSYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(19518..19910)
                     /locus_tag="SFZ78_000027"
     CDS             complement(19518..19910)
                     /locus_tag="SFZ78_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG8210949.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISITGSK"
     gene            complement(19915..20358)
                     /gene="rpsE"
                     /locus_tag="SFZ78_000028"
     CDS             complement(19915..20358)
                     /gene="rpsE"
                     /locus_tag="SFZ78_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG8210950.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(20370..20726)
                     /locus_tag="SFZ78_000029"
     CDS             complement(20370..20726)
                     /locus_tag="SFZ78_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG8210951.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYIYHG
                     VIAALAESLRENGIRL"
     gene            complement(20736..21272)
                     /gene="rplF"
                     /locus_tag="SFZ78_000030"
     CDS             complement(20736..21272)
                     /gene="rplF"
                     /locus_tag="SFZ78_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG8210952.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(21351..21746)
                     /gene="rpsH"
                     /locus_tag="SFZ78_000031"
     CDS             complement(21351..21746)
                     /gene="rpsH"
                     /locus_tag="SFZ78_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG8210953.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(21756..21941)
                     /locus_tag="SFZ78_000032"
     CDS             complement(21756..21941)
                     /locus_tag="SFZ78_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG8210954.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(21943..22488)
                     /gene="rplE"
                     /locus_tag="SFZ78_000033"
     CDS             complement(21943..22488)
                     /gene="rplE"
                     /locus_tag="SFZ78_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG8210955.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(22492..22725)
                     /locus_tag="SFZ78_000034"
     CDS             complement(22492..22725)
                     /locus_tag="SFZ78_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG8210956.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(22725..23093)
                     /gene="rplN"
                     /locus_tag="SFZ78_000035"
     CDS             complement(22725..23093)
                     /gene="rplN"
                     /locus_tag="SFZ78_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG8210957.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(23093..23344)
                     /gene="rpsQ"
                     /locus_tag="SFZ78_000036"
     CDS             complement(23093..23344)
                     /gene="rpsQ"
                     /locus_tag="SFZ78_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG8210958.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(23354..23539)
                     /gene="rpmC"
                     /locus_tag="SFZ78_000037"
     CDS             complement(23354..23539)
                     /gene="rpmC"
                     /locus_tag="SFZ78_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG8210959.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(23526..23951)
                     /gene="rplP"
                     /locus_tag="SFZ78_000038"
     CDS             complement(23526..23951)
                     /gene="rplP"
                     /locus_tag="SFZ78_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG8210960.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(23954..24655)
                     /gene="rpsC"
                     /locus_tag="SFZ78_000039"
     CDS             complement(23954..24655)
                     /gene="rpsC"
                     /locus_tag="SFZ78_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG8210961.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(24655..25080)
                     /gene="rplV"
                     /locus_tag="SFZ78_000040"
     CDS             complement(24655..25080)
                     /gene="rplV"
                     /locus_tag="SFZ78_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG8210962.1"
                     /translation="MSKALIKFIRLSSTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     VKAEVKAEEKKTVAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(25091..25372)
                     /gene="rpsS"
                     /locus_tag="SFZ78_000041"
     CDS             complement(25091..25372)
                     /gene="rpsS"
                     /locus_tag="SFZ78_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG8210963.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(25374..26204)
                     /gene="rplB"
                     /locus_tag="SFZ78_000042"
     CDS             complement(25374..26204)
                     /gene="rplB"
                     /locus_tag="SFZ78_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG8210964.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(26206..26487)
                     /locus_tag="SFZ78_000043"
     CDS             complement(26206..26487)
                     /locus_tag="SFZ78_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG8210965.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(26490..27104)
                     /gene="rplD"
                     /locus_tag="SFZ78_000044"
     CDS             complement(26490..27104)
                     /gene="rplD"
                     /locus_tag="SFZ78_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG8210966.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            complement(27101..27676)
                     /locus_tag="SFZ78_000045"
     CDS             complement(27101..27676)
                     /locus_tag="SFZ78_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG8210967.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(27686..27997)
                     /gene="rpsJ"
                     /locus_tag="SFZ78_000046"
     CDS             complement(27686..27997)
                     /gene="rpsJ"
                     /locus_tag="SFZ78_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG8210968.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(28196..28957)
                     /locus_tag="SFZ78_000047"
     CDS             complement(28196..28957)
                     /locus_tag="SFZ78_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG8210969.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYKKLRDFLKFNEIRY"
     gene            complement(28993..30987)
                     /locus_tag="SFZ78_000048"
     CDS             complement(28993..30987)
                     /locus_tag="SFZ78_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG8210970.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(30956..31756)
                     /gene="rsmA"
                     /locus_tag="SFZ78_000049"
     CDS             complement(30956..31756)
                     /gene="rsmA"
                     /locus_tag="SFZ78_000049"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG8210971.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            31836..32372
                     /locus_tag="SFZ78_000050"
     CDS             31836..32372
                     /locus_tag="SFZ78_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG8210972.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            32396..33466
                     /gene="rlmN"
                     /locus_tag="SFZ78_000051"
     CDS             32396..33466
                     /gene="rlmN"
                     /locus_tag="SFZ78_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG8210973.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            33463..33561
                     /locus_tag="SFZ78_000052"
     CDS             33463..33561
                     /locus_tag="SFZ78_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8210974.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(33575..33651)
                     /locus_tag="SFZ78_000053"
     tRNA            complement(33575..33651)
                     /locus_tag="SFZ78_000053"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33615..33617),aa:Met,seq:cat)
     gene            33786..33873
                     /locus_tag="SFZ78_000054"
     tRNA            33786..33873
                     /locus_tag="SFZ78_000054"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33820..33822,aa:Ser,seq:gga)
     gene            33920..33995
                     /locus_tag="SFZ78_000055"
     tRNA            33920..33995
                     /locus_tag="SFZ78_000055"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33953..33955,aa:Ala,seq:ggc)
     gene            33999..34074
                     /locus_tag="SFZ78_000056"
     tRNA            33999..34074
                     /locus_tag="SFZ78_000056"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34032..34034,aa:Val,seq:gac)
     gene            34102..34632
                     /locus_tag="SFZ78_000057"
     CDS             34102..34632
                     /locus_tag="SFZ78_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8210975.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKVSLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(34612..35214)
                     /gene="leuD"
                     /locus_tag="SFZ78_000058"
     CDS             complement(34612..35214)
                     /gene="leuD"
                     /locus_tag="SFZ78_000058"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG8210976.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(35216..36628)
                     /gene="leuC"
                     /locus_tag="SFZ78_000059"
     CDS             complement(35216..36628)
                     /gene="leuC"
                     /locus_tag="SFZ78_000059"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG8210977.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(36615..37691)
                     /gene="leuB"
                     /locus_tag="SFZ78_000060"
     CDS             complement(36615..37691)
                     /gene="leuB"
                     /locus_tag="SFZ78_000060"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG8210978.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(37678..39225)
                     /gene="leuA"
                     /locus_tag="SFZ78_000061"
     CDS             complement(37678..39225)
                     /gene="leuA"
                     /locus_tag="SFZ78_000061"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG8210979.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGVATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMWHENL"
     gene            39545..40174
                     /locus_tag="SFZ78_000062"
     CDS             39545..40174
                     /locus_tag="SFZ78_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8210980.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(40210..40854)
                     /locus_tag="SFZ78_000063"
     CDS             complement(40210..40854)
                     /locus_tag="SFZ78_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG8210981.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(40992..41375)
                     /gene="queF"
                     /locus_tag="SFZ78_000064"
     CDS             complement(40992..41375)
                     /gene="queF"
                     /locus_tag="SFZ78_000064"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG8210982.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPNKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            41535..42134
                     /locus_tag="SFZ78_000065"
     CDS             41535..42134
                     /locus_tag="SFZ78_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEG8210983.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELIPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(42139..43020)
                     /gene="metA"
                     /locus_tag="SFZ78_000066"
     CDS             complement(42139..43020)
                     /gene="metA"
                     /locus_tag="SFZ78_000066"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEG8210984.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGSRRAKHQDIRPQEILIVNLMS
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(43103..44374)
                     /locus_tag="SFZ78_000067"
     CDS             complement(43103..44374)
                     /locus_tag="SFZ78_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEG8210985.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANIEGGAFGIPVTSGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(44800..47316)
                     /gene="flgE"
                     /locus_tag="SFZ78_000068"
     CDS             complement(44800..47316)
                     /gene="flgE"
                     /locus_tag="SFZ78_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8210986.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQ
                     FYTTSKNSVEVTEKGVDCAALFNGKGDGLNLRDGQGIWVSYADSKFSTDVPNGVNVFN
                     PNTQATQNGVIFWGDENNAVNLDITLNGVRIQNNSIKSLDQAIEYINTFTAPTDTREG
                     TGVKAVRKADGSGIEFINTNADGTTDNMKNIDLVVNQANTAGERHNLTWQANNNSFQA
                     ASRKQGANSVWIPGNNPVNGTERIQIVTAHKYVYSSTPVQLDPMYNPDGGPAFNQANI
                     NTPGTAENNYRNAVNGSLLNTTVRTFRTTEDLRELLQRDARYGVDYDGSGGFEADGSD
                     VNEGVKVTVGATGEFIISNPNVQSTPPNGIVQNNRRPHDISFNVTAYTDAKGKVSTNM
                     AFTNIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIFDSLGSKHTIEVQFVKQSTTQD
                     GGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLANYSPKTINFSPNNGAAP
                     NQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTN
                     GKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTGGRGEMKTSALEMS
                     NVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(47520..48002)
                     /gene="ruvC"
                     /locus_tag="SFZ78_000069"
     CDS             complement(47520..48002)
                     /gene="ruvC"
                     /locus_tag="SFZ78_000069"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG8210987.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            48098..49420
                     /gene="dnaA"
                     /locus_tag="SFZ78_000070"
     CDS             48098..49420
                     /gene="dnaA"
                     /locus_tag="SFZ78_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG8210988.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            49580..50647
                     /locus_tag="SFZ78_000071"
     CDS             49580..50647
                     /locus_tag="SFZ78_000071"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG8210989.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            50676..52985
                     /gene="gyrB"
                     /locus_tag="SFZ78_000072"
     CDS             50676..52985
                     /gene="gyrB"
                     /locus_tag="SFZ78_000072"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG8210990.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(53011..53352)
                     /locus_tag="SFZ78_000073"
     CDS             complement(53011..53352)
                     /locus_tag="SFZ78_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG8210991.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(53355..54593)
                     /locus_tag="SFZ78_000074"
     CDS             complement(53355..54593)
                     /locus_tag="SFZ78_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG8210992.1"
                     /translation="MKQNNQKEDRRNFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEINGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
     gene            54798..56105
                     /locus_tag="SFZ78_000075"
     CDS             54798..56105
                     /locus_tag="SFZ78_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG8210993.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            56239..60729
                     /gene="gltB"
                     /locus_tag="SFZ78_000076"
     CDS             56239..60729
                     /gene="gltB"
                     /locus_tag="SFZ78_000076"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG8210994.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAQELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            60739..62184
                     /locus_tag="SFZ78_000077"
     CDS             60739..62184
                     /locus_tag="SFZ78_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG8210995.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(62185..62760)
                     /locus_tag="SFZ78_000078"
     CDS             complement(62185..62760)
                     /locus_tag="SFZ78_000078"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEG8210996.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(62793..63032)
                     /locus_tag="SFZ78_000079"
     CDS             complement(62793..63032)
                     /locus_tag="SFZ78_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG8210997.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            complement(63097..63744)
                     /locus_tag="SFZ78_000080"
     CDS             complement(63097..63744)
                     /locus_tag="SFZ78_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG8210998.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            63904..65580
                     /gene="ilvD"
                     /locus_tag="SFZ78_000081"
     CDS             63904..65580
                     /gene="ilvD"
                     /locus_tag="SFZ78_000081"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG8210999.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNNYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            complement(65592..65988)
                     /locus_tag="SFZ78_000082"
                     /pseudo
     CDS             complement(65592..65988)
                     /locus_tag="SFZ78_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(66080..67306)
                     /locus_tag="SFZ78_000083"
     CDS             complement(66080..67306)
                     /locus_tag="SFZ78_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG8211000.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            67384..68058
                     /gene="queC"
                     /locus_tag="SFZ78_000084"
     CDS             67384..68058
                     /gene="queC"
                     /locus_tag="SFZ78_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG8211001.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCISDVPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            complement(68079..69605)
                     /gene="dsbI"
                     /locus_tag="SFZ78_000085"
     CDS             complement(68079..69605)
                     /gene="dsbI"
                     /locus_tag="SFZ78_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG8211002.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(69617..69784)
                     /gene="dba"
                     /locus_tag="SFZ78_000086"
     CDS             complement(69617..69784)
                     /gene="dba"
                     /locus_tag="SFZ78_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG8211003.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            complement(69890..>71013)
                     /locus_tag="SFZ78_000087"
     CDS             complement(69890..>71013)
                     /locus_tag="SFZ78_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8211004.1"
                     /translation="LKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKK
                     VIMPIHTLEKLSANLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIEN
                     AKSSHQNSQKLKNNSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQ
                     DMHILMDKVELTLSELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQT
                     NLLALNAAIEAARAGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKA
                     LMDLIHDSMKETSSKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNI
                     DKVNELANSVKDLSCEINNISQNVLNGASKLSEKLSSFQ"
BASE COUNT        22939 a        12256 c        10866 g        24952 t
ORIGIN      
        1 ttataatatg gctctatttt atcattaatg gcttcttgac attctctttc tttttcccat
       61 tttatcgcca cttcaaaatc agctttaaaa cttggtaaca tcgcttattt tactctcttt
      121 ttcccattta accacttatt aaaataaact taaattaaag ccattaatag taagtttctt
      181 ttcttttttt aactttactt ttgtattttc tatttttgcc attgctttaa tgacttttgc
      241 caaatcatcg cttacatttt ctaaaatcaa gttcattttt aaccccttaa agtgttttaa
      301 tatatgcttt agccgatacc gctagaaatg cacttcttga taagcccatt tttttagaat
      361 aaaaatctat ctcatctaca agactatttt ttaaggtaat agctagattt ttacttttgt
      421 ctttttgtat gggctctggg ataaactcat ttttagccaa agcttcttct aaataacaag
      481 caaaggcatt ttttaaatct tctattgctt cgtttggtgt tttaccatct cctgccatta
      541 agacaagttt attaagttct ttatcatcaa attgtgcgaa ataatcgcca tcatcaagtt
      601 ttactaaatt aatcttataa ggcaaattca aataataatt tatatctttt ttcatttttc
      661 atcctttaaa agttttaata tttgctttac ataaaattct tttataggtt tatgcaaagg
      721 cacaataatg cttttattat cttttttaaa tttatgatga cttcccctaa tgctaactag
      781 tttataacca taccaactta aaagcttttc tatgttagca aaacttgcat ttttggggtt
      841 attttctaat tctttgatta acttttcttt gttgttcata tatgtattat atatataatt
      901 atcttaaaat attttaaatg cattcaaagc cttgcaaagt attttatatt ttattaagta
      961 tttgtatttt ataattcttt tacattcaaa gggaggctca acccctatta agataatcta
     1021 acaaatcttt atttattaaa caaatcaaat catttaaaaa gttttctatc ttatcaggca
     1081 ttaaacctat attagtccct ttttcttttg tgcttatgcg tggatataat ttattatcat
     1141 tttctctaat ttttaaaaga ttttcaaaat gacaggctct attccttaaa gtatgtagca
     1201 agtttaaaac tatattaact ttatctatat tatcaaagcc ttgttttgta ttttcgtaaa
     1261 taaaaaagtt tctattacta ctgctatact tcctaaaatc aaaagccctt aaatctaaaa
     1321 tcttattttg caccttgtaa gatatgatta atttagccac tacacctaag ctaaggcgtg
     1381 ataagatttg atgaggtttt aaactatctt tatctttaaa ctcatttatt ttagccaata
     1441 aaaaggatta tcgctaattt ttatccattc tttgcaatta ctatttaatt cataatctag
     1501 ggcatttctt agataaattt caagtattgc tattttaggc attatcttag atattaattt
     1561 caagttctca aaatgttcgt ttatatcttt ataatgctct aatctttgct ttgaaaagat
     1621 aaattctaaa cctaacattt ttaatctttt tcttgtagct tttttaaagc ttcattagct
     1681 ctttgacttg ctttaagtgt atcattagtc gcataaatat ttatagtact taaatcccta
     1741 tgccctaaag ctccactaat aactgcggga ttaactccat tttgcattaa aaaactagcc
     1801 tttatgtgcc ttgaaaaatg gggcgtccat tcttttactc cgctaagttc tcttattttg
     1861 gcttcttgtc ttgccaaatt tgatattttt ttaccgctaa cactagaaac aaaaactaat
     1921 cctttgtctt gtttaacctc atcttttaaa gcctttagtg cattatagca ttcatcatct
     1981 aaggcgtgtt cttgtgcttc accatttttt gtctttggca aaaatatagt ttttctttct
     2041 aaatctacat tttgccaaag caaacttaaa acctcatccc tacgcctacc actatgtata
     2101 agcaagaata aagctttata aagtaaatta tctttgtata gctctaaaat agcatttaaa
     2161 atagcttcat atttaccttt aggattagta acaagctttt tattttgcac tctatcaagc
     2221 tttaaaccta atgtaacatt ttcattaatc catttatttt ttactgcata tctaatcata
     2281 gggcttagca cttctttaat ggctcgatta tatgtttttg gctctagtcc tttgtttttc
     2341 attccattat aaaattcttg taccttgtaa agcgtaagct catctaagtg tatatttcct
     2401 aatggctcta agatatgatt attaaaaatg cttattagat ttcttatgtg tcctttgtgt
     2461 tgttcgttta aatcttttat gttgtaattg gtttttataa atatctcaaa aatatttttt
     2521 atcaaaatgc tagaatttaa agcatatcca acgctaaaaa gctttttaaa ctcgttttca
     2581 tattctttag ctcttgcaag tgctattctt atatattcgt tttcattcca cgcagggcgt
     2641 aaaggaatag taaaagcgtg ttgcttttct ttacccccat tttgcattct aaataaaaag
     2701 gagttaattt tatctttgtg tctttttaaa tgtgttcctt ttcctatggg tatattataa
     2761 tccttcctat caatcgccat ttttaacctt attatttttg ctatattata gcgtatttca
     2821 aagccttata aacttaataa aattatctta ggttaccttt actttagggt taggacttat
     2881 ttttaccttt tttaccgcta aacttaaatg gatgaaaagg actattttat agctatcctt
     2941 tcatccggtt actattaaaa gttacctgct aaaaggttgc ctttttgaaa taattcgaaa
     3001 tgatacaatg ggacttcaaa ggcttcagcg taatttaagc aaaatctcta aaagtatggt
     3061 aaaatggggg tttagagtgg tgcggacgaa aggacttgaa ccttcacgca ttgctgcacc
     3121 agatcctaag tctggcgtgt ctgccaattt caccacatcc gcaaagtggt acgcccaaga
     3181 ggattcgaac ctctgaccta cggcttagaa ggccgttgct ctatccagct gagctatgaa
     3241 cgcatataaa atcttggtgg tgcgcccgat aggaatcgaa cccataacct acagatccga
     3301 agtctgttgc tctatccagt tgagctacga gcgctagtgg ggtgagtgat gggaattgaa
     3361 cccacgaccc tcaggaccac aatctgatgc tctaaccgac tgagctacac tcaccatttt
     3421 gtataaattt ataaaaaatg gtcggggtga aaggattcga accttcggcc ccttggtccc
     3481 aaaccaagtg cgctaaccag actgcgctac accccgaata aataaaagga aatattttat
     3541 cacaaaataa ttttaaagtc aaggattttc atctcttatt cttaaaaaaa ccggaaagcg
     3601 aggtaaggaa tttttggtca atccattaaa tttataagtc acaatgctac caatttttgg
     3661 aggatttttt ctatcttcat cttttaaacc actgcctatt ttaatgattt gtccattagg
     3721 cattttacaa agtaaggcac ctacttgatt ttcaaattta cccttaccct tgcgaaatcc
     3781 tactaactca cactctgcat catcatgggg ttttaatttc ataacatttt tacttctgcc
     3841 tttttcataa ggacttaaat ttttgcgtat gacaatacct tcaccttgat tttttataat
     3901 gctttcgtaa aattgattta aattattttg attttcaact ggaatttgag gaataatttt
     3961 tatataggca ctaggatatt tttgcaaata ctcttctaaa acagccaaac gatttttaag
     4021 ggtgcaagta gaaatttgaa attcttcgca agcatttggc acatcaaaaa tattataagt
     4081 tacttccttc cataaggtca aattactatc gccactacga attaaagctg aaatttcatc
     4141 aaatttattt cttgctatcc aaagctcacc atcaatagca aaaggaggga aattttttgt
     4201 aaaaaagtca ggagttttta ttttgtaatt ttggcgagtt tttagatatt tcccatccca
     4261 aattccacgc actccatcaa gtttttcgat catcaaataa gcattaaaat ctttagagtt
     4321 aaaatcttgc ttatcgaatt tgctaagaag taaaatttca ttagcaaaaa ctaaacaagc
     4381 acaacatatt aaaaaaacaa acctcatcaa agcagattaa tcatatatcc agttgcatct
     4441 ttttgaatat tataattata agttccatca agatatatta caagtcgata atatccttta
     4501 tgagatccaa agtctatgcg tttaaaaata gaattgctaa ggcgtatgtt ttttgtaggg
     4561 ctaatcattt tagatctaaa atctataacg attttacttg gatttcctac tgaaaaatct
     4621 gtaatcattt catcactagt gttaagtttt attttatttt tataaaccgc ataagaaata
     4681 aaatcataaa tctttgcaac ctgtaaaggt atttcaacat tggctgttga gtttgattct
     4741 tgtttggagc tatttttttc aggtatagta actgaaacat cgagtacttt tgaaggatca
     4801 ggacttttaa atcttgatat aatataagta tcgtgccaat caatactttt attgacatct
     4861 aaatcgatct tatcttcact tccgtctaaa ttgatataat taaaagtgat gctttttaaa
     4921 attcttgcac tagaattaaa tttaacttcc tctttttgaa attcaggtgg agcaaccaag
     4981 gttatattgt gatctgtctt aaaaggattt tcatcagcat ataaaagaga ggtaaaaata
     5041 aaaaatattg ccaaaattct agttttcatt tgggtataat ccttttaatt caaaataatc
     5101 tttttgtgct ttagcatttt gttctttgag caaaataatc tttttattaa gctcttcttt
     5161 ggtattttct aagcttaata aagtatctaa agaatactgc ccaaaaaaca tattgccaaa
     5221 ataaatcgct ccaattacaa caagaaaagc ccaaaaaatc atttttataa catgggtata
     5281 aaaacttttt tttcttgtgc tttcgtcgta ttctttaagt aaatcgctca gagcttttct
     5341 cctaagtatt catcgctttc aagttcaatt tcaagcaagc gattgtattt tgcggttctt
     5401 tcacctcttg ctagggctcc tgttttgatt tgtcctgtat ttaaagccac agcaaaatcc
     5461 gctataaaag catcttcact ttcgccgctt ctatgactca tcacacattt atagttattt
     5521 ctttgcgcta aacgcacagt tctcatagtt tgggtaatag ttccgatttg atttggttta
     5581 ataagcacag catttgccat ttttttgatg atgccttctc ttaaaatatc ttcattagtt
     5641 acaaacaaat catcgcctac aagctgaatt ttattgccca atttttcagt aagcttaatc
     5701 caaccttcaa agtcattttc agctaagcca tcttcgatac tgcaaattgg atattttgca
     5761 caaagttcta catagcgttc gatcaaatcc tcgcttgaaa aagccttgcc ttccatgtga
     5821 tatttgccat ctttgaaaaa ttctgtactt gccacatcaa gagcgatttt tacacgattt
     5881 tcataacctg cttttttgat acaagtcatt aaaagatcga taggttctgt gttgttagct
     5941 aaatttggag caaaaccgcc ttcatcacct aaagccgtag aatgtccaga atttgcgagt
     6001 tcttttttta atatcgcata aatttcacaa actgaacgca aagcttcttt aaagctagta
     6061 aaaccaaaag gcatgatcat aaattcttga aaatctacat tgttgtttgc atgagcaccg
     6121 ccatttatga tattacacat tggcacgggt aaaatgctcg catttgcacc acctaagtag
     6181 cgatataaag gcattcccaa agcagctgca gccgcacgag ctgttgccat agatacgcct
     6241 aaagtcgcat ttgcacctaa atttgagtaa ttatttgttc catcaagctc acgcaaagta
     6301 tcatcaagtt gagtttgatt aaaagcatct agtcctaaaa tttcatctgc aatggtctca
     6361 ttgacatttg caacagcttt taaaacgcct tttccgccaa atctttcatc attatcacgc
     6421 aattctaagg cttcttttga acctgtactt gcaccacttg gaactatggc cgcacctaca
     6481 cttccatcgc ttagcgtaac ttcggctttt acggttggat ttcctctact atcaagaact
     6541 tcataggctc taacatcttc aattactaac attattcttc tccttcgtca tcttcgctac
     6601 cgctgatcat accttctatt cccatagaat tttgaattgc ttttgtgatt tcatctgcaa
     6661 tttcagggtt ttcttttaag aaagcttttg aattttctct accttgtcca agttttttat
     6721 ctttataaga aaaccacgca ccacttttat ctacgatatc aagttttaca ccataatcga
     6781 tcaattcacc ttcacggctt aaaccctctc caaacatcac atcaaattca gcttgtctga
     6841 atggaggagc aactttattt ttaactactt ttactttaac gcggtttcct ataggttctt
     6901 cgttttgttt taaggttgct acttttctaa catctaaacg cacagaagca tagaatttta
     6961 atgcatttcc acctgttgta gtttcaggag taccataacc catagcacca attttcatac
     7021 gaatttggtt gatgaaaatt actgtggtat tcattttatg aactatacct gtaagttttc
     7081 ttagagcttg agacataagt cttgcttgaa gtcctacatg ttgatcgccc atatcgcctt
     7141 caatttctgc ttttggagta agtgctgcaa cgctatctac tacgataaga tctactgcgc
     7201 cacttcttgc tatagtttct acaatttcta aggcttgttc tccaaaatca ggctgagaaa
     7261 catacaaatc atctgtattt acacccaaat ttttagcata ttttacatca agcgcatgtt
     7321 ctgcatcgat aaaagcacaa actccacctg ctttttggca ttctgcgata atatgtaaag
     7381 ttagagtggt tttacctgaa ctttcaggtc cataaatttc tataattctt ccttttggaa
     7441 caccgcctat acctaaagca agatcaagcc caactgaacc tgtgcctatg ctatcgattt
     7501 gctcgacttc tttatcccct agtcttaaaa tagtgccttt tccaaaggtt ttatctaaac
     7561 tttttagggc agcgtctaga gattttcttt tattatcatc cataactttc cttaaaaatt
     7621 ctaaattttt agttagaatt ctaacaaaat aaaattaaat aatgatttat tttgctagaa
     7681 ttaaagcaaa gatttacaag gaagcataga tgaaaaaaat tactattgca cattctcctg
     7741 atgctgatga tatttttatg tatatggcaa ttaaatttgg gtggataggg aatgattttg
     7801 cttatgaaaa tacagcttta gatatacaaa ctttaaatga atttgccttg aaaaatgaat
     7861 ttgatgctac ggctatttct tttgggcttt atcctttaat cgcttctgag tatgcacttt
     7921 tacgcacagc agtgagtttt ggtgaaggtt atgggccaaa actcatcaag aaaaaagaca
     7981 cgcatttaaa aagaaatttt aaagtcgctt tgagtggagc aaataccacc aatgctttga
     8041 tttttcgcat gaaatatcct gaagcaagaa ttatttataa gaatttttta gacattgaaa
     8101 atgcggtttt aagtggcgaa gtagatgcgg gagttttgat ccatgaaagc attttagatt
     8161 ttgatcaaag tctttacgtg gaagcagaac tttgggatat atggcttgaa tttgctaaag
     8221 aaaatttgcc tttgccttta ggtggaatgg ctttgcgtcg ttctttacct ttaagcgacg
     8281 tgattaagat cgaaagagat ttaaccaatg ctgtaaaaat tgccgatgca aatcgtaaaa
     8341 ttttagcccc tatgcttatg gaaagaaaac ttatccgtgt tgatgaagaa aaacttgata
     8401 cttatcttaa tttatatgcc aataaaaact ctattagcat gaatcaaact caacttttag
     8461 ctgtagatac gctttttaaa ctaggatatg attataaatt ttatgataaa atcatacatg
     8521 taaatgatta tcttatccct agcgaatacg aagaagctag aaattcttaa aaaggataaa
     8581 aatggacgaa agtaccttag ttgctcttgg agtgcaaacc tttaaaatca cacttttact
     8641 ttccttgcct atgcttttag caggacttat tgcagggctt gtgatcagta tttttcaagc
     8701 aactacacag attaatgaaa tgacactttc ttttgttcct aaaatcatct tggttgtggt
     8761 tattttaatc tttttaatgc cttggatgac tacaactatg attgatttta ctgagaatat
     8821 actaaatcaa attccaactt ttatcaaatg atcattgatt ttaaaaaata ctcttctgtg
     8881 cgtataggaa atgaatttga agttttagtt ttggatcaaa tttatgattt tgatggtttt
     8941 ttaataggcg gcgcaaataa ccttttagtt agcccaaaac ctaaaaatat aggaatttta
     9001 ggagatagtt ttgattttat acaaatttta gatcggaata aagattttat acatcttcgc
     9061 ataggctgca aaacaaaatc aagcaaaatg tatcgctttg ccaaagaaaa caatcttaag
     9121 ggttttgagt atttaagcaa aattcctggt acacttggcg ggcttttgaa aatgaatgca
     9181 ggacttaaag gagagtgtat cagtcaaaat ttaatcaaaa ttgctacttc tcaaggcgaa
     9241 attctaagag caaatataaa ttttgattat cgtttttgtc ctttaaatac gcattttttt
     9301 tgggctgaat ttaaactaaa ctttggcttt gataccctta aagatgaagc tttaaaaaat
     9361 gcaagaagca accaacctag tggagcaagc tttggctcta tctttaaaaa tccgaaaaac
     9421 gactttgcag gacgtttaat cgaagctgta ggacttaaag gatttagcaa gggagatgct
     9481 atgttaagcg ataaacacgc aaatttttta attaataaaa aaaatgcaag ttttgaagat
     9541 gcgttttttc ttatcgaatt ggctagaaaa aaagtctttg aagaatttgg cataaactta
     9601 gaaaatgaag tgattattat ctaaaaattt ttcaatatat ctttaatttt tttatttcat
     9661 tatctataac actagctaac atttttggca tttgatttac aatatcttga taattttgtt
     9721 ttgtatcttg atcttttaat atcaaattta attttgcatt ttttgctgca agaatttttc
     9781 cattgcttgt agaaataatt ttaaaattaa cactagccac accctcttta ctagttgtga
     9841 taaaataatt tgtaatattt acataaaaat cttgcaaatt taccaccaca acataatctg
     9901 taaatttggc atacatttta gccttatctt tttcttgtgt taaaaaagga cttacattta
     9961 taagttttgc atccttaggg ctaaaatatg acaaagtttt aggactttga taaataccat
    10021 ttgcagcaga attaacccaa tcaagcctta aactttgaat caaattttta gcaaataatg
    10081 tagaaaattc cttatcactc accctaaaac catctaaaaa ataaccaaaa tttttcctag
    10141 aagttaatac aatagcaaaa tcaatatcct tatctttggt gatttgcgat tttttttcaa
    10201 ttaaagtaga actatcaaac aatgcttttt gttgatttag atttggattt gcaacatttt
    10261 gatttagatc tattacttca aaactatctg cgcttttttc aattttaata acttttttct
    10321 gagaaaaatt attcgctaaa agattagaac ttaaaactaa acttaaaaac aaaatgaaac
    10381 aatacctcat cttcatcctt ataaactatt taaatataaa attatactct ttattttata
    10441 aaaaatcttg taaaaaattc ctagatgaaa cacaaataaa aggattggat ttataactta
    10501 aagggttata taaaatgtat tttttagaaa aatcgcccat aaatcctcca ttttgattaa
    10561 tcaaaaaatc tcctgctaca atatcccaaa tattaagctt ttcaaatctt ttataaactc
    10621 ctgccctagc ctctaaaata gcacaaaatt tcaatccaga gcctatatta atagcttcta
    10681 attgatgctc ttttgcaaag tcttcatctt ctttgctaag atgattaaca ctcaataagg
    10741 ctttatattt atttttctcg tattcttgct ggtcaatttg caaaggttta tcgtttttat
    10801 aaaccttggt ttttgcatga gcatagaata tatcaccttt tgatggattt tgtatgagtg
    10861 ataaaacagg gcgattgtca tgaaccaaac ttatcataac gcaaaattca tcactgcctt
    10921 ttaaaaaacc acttgttcca tcaagaggat cgataagcca aaaagttttt aattcttcac
    10981 actcttcttt gctgagtaat ttttcttctg atagaatttt aatatccgta gaacccaaaa
    11041 tatcatttag aattttatta gaagcaagat ctgctgatgt aagcgggctt ttatcttctt
    11101 tttcccaagt tttgaaattt tttctctctt ctaaaatagc tttagaagct tgattgctag
    11161 catttatagc aatttctaaa aatttatcaa gattaagcat gattataaac tttctataag
    11221 attttttaaa attatacaag aagattttgt ggaattttta atttccacaa aaattttaat
    11281 taaattttac tagtttcacc caaataaagt tgtcttggac ggactatttt aagactttct
    11341 tgctcttttt gttctatcca ctgagctatc catcctgggg tgcgccctat aacaaataaa
    11401 gtagcaaaca tttcatttgg aatacctaag gcttttaaaa taagtccact atgaaaatca
    11461 acattcggat ataaccctct ttgaacaaaa taatcatcgc ttaaagcaat ctcttctata
    11521 cgcgttgcta ctttaataag attggtatca atacccaact catcaataag ttgatcacga
    11581 agctttttca gtacttttgc tctaggatca aaatttttat aaaccctatg cccaaagccc
    11641 atcaagcgga aaggatcgtt tttatcctta gctcttttga tgaattcatc taccctatca
    11701 acactaccta tttgctcaag cattctaata acaccttcat tagctccacc atgtgcatga
    11761 ccccaaagcg caccaatacc tgctgctata caggcataag gatgagcatg agttgaaccc
    11821 acagcacgaa ctgttgaagt tgaagcattt tgctcatgat ctgcatgaag cataaaaact
    11881 gtatcaagtg cttttacttc tataggttta agctctacat gatcgtaagg ataggttctt
    11941 aacatatata agaaattttc tgtaaaacca cgatctaaat ttggataagc cataggaaag
    12001 ccgtgtttat atctataagc ggtggccact atagtaggga ttttagctac tattctagct
    12061 gccatttcca tatattcttc ttttacattc atgtttaaat gatcaggata aaaagcacta
    12121 agcgatgaaa cagcaccttg taaaactgcc ataggatgag cattatcagg gaaagaatca
    12181 aaaagacggt gcataccttc atggataaaa gaacgttttt tcatttcata acgaaacgct
    12241 tcaagacgcg tagcatcagg tagttcttta taaagtaaaa gatgaaccac atctaaataa
    12301 agtttgtttt cagcaagcca ctctatagga tagccacggt gcattaaaat tccattttct
    12361 ccatcaatat aagtgatttt tgatttacaa gtagctgtag aagtcaagcc ctcatcataa
    12421 gaaaacattc ctgtttgttt ataaaaactt gacatatcta caacgcttgg cccagttgta
    12481 ccgtcatata taggaaattc atagcttttt ccatttctat tatcggttat agtaacggaa
    12541 tttgacattt tcgctccttt tattgttact tttattaatt ctaacaaaaa aggacgatta
    12601 tgagtttttt tattattaaa tttttaagat tttgtttgct tttttgagta aaaaagtaac
    12661 tttcattttt tagaattaga aagaaattta atcatactca taacaataac agcctcaaat
    12721 aacgctgtta aaataagcgc tgaataaagt ttctcatcaa taaccttgcc cgaataaccc
    12781 agagtagctg ttgctataag caaggttaaa ggcatagaat gactaagacc aaataaaatc
    12841 atatttttaa aaccaattct ttttaaaaaa acacttgcac ataaaattct taaacccacc
    12901 ataacaaaca taagtaaaaa tgcttgtaaa acgattttat aatctaaaat cattttaaga
    12961 tcaaaggttg aacctatatg gataaaaaaa atagggatca aaaacccatg tccaaaagta
    13021 gaaagcttat gctcaagatc ttttttatga tcaaaaaaag tagctataaa tgagcctgct
    13081 ataaaagaac caagaacgat ttcaagtttt gtaataacca tagcaacaat gatcagtata
    13141 aaaatggcca tacaaaatct tatatctttt tcatttttat cctcccatgg cataagcaca
    13201 actttaagct gaggatacca ccaaaaaagc acaccaagca ttttaaatcc gagcaaacaa
    13261 agtcccaaaa agatattaag atataaaata ctttgcgcta catcaataat acctgttcct
    13321 tcgcgcaaaa aagctcccgc tatagtcaaa agcacaatag aaatcacctc agctaaagta
    13381 gccactatca tagcaatatt tagccaataa cactcttttc caaaatcctt aaaaagcaaa
    13441 gataaaagcc ctacactcat cacaggtata atgataacaa atactaaaga aagtccaaaa
    13501 atccatacta taagagaaga taaagcgtaa agtaaaaaaa tataaaaaaa actttttttg
    13561 gcgacttctt tatccatatt aaaaaaggct cttaaattta cttccatacc tgctataaac
    13621 attagataat aaaaacctac atttgctaaa agtgcaaaat tttcactttt tcctatgaaa
    13681 ccaaaatatg ctattattgc ccctaaaata atttcagtag ctgaaagagg caagcgtaaa
    13741 atttttgcaa tatgcggaga aaaaagtaag cataaagcta taacaataag aatttttaga
    13801 tcaattaaac cttgtggatc aatgacactc tgatgcaaaa gtaaatccca tttcttttaa
    13861 ttttattata tcttgacttg gttcttcacc tttagtggtt aaataatccc ctataacaat
    13921 agccccagca cctgcttgaa aaatttcata ctgcctttct cgcaacacca cttcacgccc
    13981 acctgctacc attaccacgc tttgcggtaa agcctctttg gtatcacgaa caatttttaa
    14041 ggcttcatca gcattaagtc ttggaacttg tagttttaaa ttttcatttg ctataaaaaa
    14101 attaataggc gttgaaaaag gctgtaattc ttgcaaagat tttctaaaac ttagtctatc
    14161 ttcttcactc tcacccatac cataaattcc accacaacaa agcataagtc ctgcttcttt
    14221 agcgtttaaa ttggtttgaa atctactttc ccaagtatga gtggtgcaaa tttgtggaaa
    14281 aaattcctta gaactttcaa gattgtgatt ataagaaaaa attcctgctt ttttaagttc
    14341 tttgagttgt tccacgcttg ccataccatt acaggcaatt aaaagcaaat taggcacttc
    14401 tttttgcaca gccttagcag cctcacaaac atacttaagc ttttcatcat caagcccaag
    14461 tcctgctgta accaaacaaa aacccaaggc ttcatttttc tttgccattt tcgcttctaa
    14521 aacgatttgt gaaagttctt tacgacgata tttttgaata tctgttttta catgggcact
    14581 ttgggtgcag tatttacagt cttctgaaca atttccactc gctatatttg aaatagcaca
    14641 aagcatgatt tgcattctaa tccttcattt cttttttgat tttgcacttt aagcattcta
    14701 agaatgtacc ttttttaagc tcttttatca ctaaagtttc gccacactct tcgcattttt
    14761 cttcacttgg tttgtatttg cttataaaat tgcattttgg ataagcacta caaccataaa
    14821 atttaccgcg ttttgaaaag cgttctacga tttcaccttt ttgacaactt ggacaagtaa
    14881 tgcctgtacc attagcttta gcttttgcgg ctgtattttc gctttcgttt ttgctttcac
    14941 tttttaaatt tcttgaatac ttgcattttg ggaaatttaa acacgctaca aattctccaa
    15001 aacgcccttt tctaatagca agctctccgc cacaatcagg acaactttcg cctagttttg
    15061 tgacagtttt ttgactagct atttttgttt ttccttcttc gatttttctc ataaaaggat
    15121 agtaaaattc ttttaaagtt tcttgccaat ctgccttatc ttctgcgatt tcatctaggg
    15181 tattttcaag gtttgaagta aatttactat ctactatatc gctaaaattt ttctcaagca
    15241 cttcggttac attaaaagca acatcgctag gaatgagttg ttttttatct attgttacat
    15301 aatcacggct tgtaagtata gaaatggttg gtgcataagt agaagggcga cctatgccta
    15361 aactttcaag tttttttaca agtcctgctt ctgaatacct tgaaggtggt tcggtaaaat
    15421 gtgagttcat ttctaaattt tgcactttta aattttggcc tattttaaaa tttggcaaaa
    15481 ttttatcctt atccatatca ccataaactt tataatatcc atcaaaaagg atttttctac
    15541 cgcttatttt aaaaactgct ctatcatttt ttacaaatac attttgagtt tgagagatag
    15601 caggactcat ctgacaggct aaaaagcgat tgtaaataag tgtgtaaagt tttaactcat
    15661 ctttgtctaa aaatttagcc gcaatttctg gagtaaaact taaatttgta gggcgtatag
    15721 cttcatgagc ttcttgagcg cctttagtct ttgtagtata tacatttgct ttgcttggaa
    15781 gatagtcttt gccaaaattt gcttgtatga attttcttgc attttctact gcttctttgg
    15841 ctaaatttaa actatcggtt ctcatataag taataacccc catcacgcct tcatgggtat
    15901 ttactccttc atagagcttt tgagctatca tcatggtttt tttagggtta aaaccaaggc
    15961 gattgctggc actttgttgt aaagttgaag tcataaaagg aggcggcgga gcgatttttc
    16021 tttctttgct ttcaatgtca cttatactat aaacttcatt tttacaagct tctagtataa
    16081 gtttagcacg atctttgttg gtaatggtaa gtttttctat cttggcttta tcaaactcaa
    16141 ctagttctgc atctaaatct ttttgaaaaa tcatatcaat actaaagtat tctaggggta
    16201 caaaggcacg aatttctttt tcacgatcga ctatgatctt taaagccgca ctttgaacac
    16261 gcccagcact aagtcctctt tgaatttttt gtcctaataa agggctgagc ttatacccta
    16321 caatgcgatc taaaagacgt ctggtttgct gagcatttac agagtgcatg tttaattttc
    16381 ttggattttt taaagcattt tctatagcgc ttttagtgat ttcatgaaaa acaatgcgtg
    16441 gtaaggtgtt ttcatctttt cctatagctt ttgcaatatg ataggctata gcctctcctt
    16501 ccctatcttc atccgttgca agatagactt ctttggcatc tttggctttg cttttaagtt
    16561 ctttaactaa ggcgctatga tcacttgtga ttctatactc agggataaat tcatcatctt
    16621 ctattttaat cccaaagctt gatttaggca aatctctaat atgtccttta gaagcgataa
    16681 cttcataatc ttttcccaaa aaatttccta tggttttagc ttttgcagga gattctacta
    16741 tgattaaatt tttcttcatt ttgcaccctt gttaaataaa aagctgaatt tagctaaaaa
    16801 tatttaaaat tctacttata aaatatattt taatcaagct aaaatatttt aaaaacaaaa
    16861 ctatcataac aaaataaata aaatataatt ttaagtaatt ttaaatacaa accataattt
    16921 ttggagtata ataaaataaa aaaggtaaaa attatgaatg acaaaactta taaatttcat
    16981 ccaaatgaca caaaaatgga taaaaaaata attcaaatta ctgaaaagtc cggatttaaa
    17041 gcagctgtgt tttctatggc tgctatgact atgctaggaa gcgtggtcat ttcatctgct
    17101 ctgcctgcta tcaacagaca ttttgaagaa cttttaaccc aaagtggcgc tactcttgct
    17161 tcaagtttca cattagctca tcttgatata cttgttcgct tagttttaac catccctgct
    17221 atttttgttg tcattttatc tccatttgct ggtattttaa tggataaatt tggcaaatta
    17281 aaattcattc ttccagctat ggtggtttgg actatttctg ggataagtgg ctttttctta
    17341 aatgatattt atgctatact gacttcaaga gctatttttg gtatggcaac tgcttttata
    17401 atgacaggcg cttcggcttt gcttggggat tattatagtc gtggtggctt taatcgcaga
    17461 gaaaatgctt taagccttca aggatttttt tgtgcgatag ggggtgctgt ttttatttct
    17521 attgcgggat ttgtttcaag ttattcttgg cgttatcctt ttttggtata tggacttgga
    17581 attttaatta ccttaatggc tatcatttat ctttttgaac ctagaaaatt taaattctat
    17641 aatcatacaa aaatagaaac aaaaacaaat tattggcaat ttttccctat ctattttata
    17701 ggttttttta tcatggtagt ttattatatt tcgccaactc aacttcctta ctatatagaa
    17761 gaacatttgg gattggatcc taaatatata ggtatttcga tgtctgtatc tgcactatgt
    17821 tatggttttt tctctctaag ctatagatat attataaaat tcttaagtat taaaactatc
    17881 tatgttttaa ctctttttat cgtatcttgt tcttttttgc tgcttttttt agtagatagc
    17941 tttttcacag ttttaatcgc cttagctttg cttggaatgg gtggaggtat tatgcttgta
    18001 aataatacgg cttatctttt ttcaatctgt cctgaaaatg ctcgctctag ggcttatgga
    18061 attttagcaa gttgtatatt tttaggacaa tttttaagtc ctattatctc tcaacctatc
    18121 gttagacaaa tgggtcttgt agatgctttt ttaacatggt caatagtaat ttttatagtg
    18181 tgcattgtgt ttttattttt aaagcaaaaa cctagaataa attagcaaga aaaatcttgc
    18241 taattttatt tattacaaac ctaccgcact taaagtttgg tatttactca tataaatttg
    18301 agcttcaatt tttctcatcg tatcaagtgc tacttgaact acaataagta cagaagtgcc
    18361 gccaaaatga aaaggcacac ccataaattt caccaaaacc caaggtaagg ttgcaacaag
    18421 ccctaaataa atagaacctg ataaagttaa acgagaagcc acttcgttaa gataacttga
    18481 agttccttca cctggacgaa ttccagggat aaaaccgcct tgttttttca aattttctgc
    18541 tatgtcttta gcgttaaata cgatagaagc ataaaaataa gcaaagaaaa ttacaaacaa
    18601 gaaagttaga acatgaaaca aataactatt tggatttaaa aagtcattaa tggcttgtag
    18661 ataaggattt gtactagttt gtaaaattgt tgttggaaac atcaaaatcg cactagcaaa
    18721 aatcggtgga ataaccccac taagattgag tttaatagga atataattca taatgcgttt
    18781 gttttgattt tgcattacaa ctttacgaga ataagaaata ggaattcttc tttctccaag
    18841 ttctatataa ataatcaccc ctatggtgat taaaatcaaa gcaaaaattg caaaagcggt
    18901 taagaaattc atctcgcctg aattgatttg tcctacagtt cctgaaatcg ctcttggaat
    18961 acctgaaaca atacctgcaa aaatgattaa agaaatacca tttcctatac ctctttgtgt
    19021 gatttgttcg ccaagccaca ttaaaagcat agttccagca agcatagaaa tagcacaaag
    19081 tgcgataaac atatttaaat cttctaccat tatagcccct gcaccaccac gaccgtgcaa
    19141 gctttgcaaa cctatagcaa cgcctatact ttgaaccaaa gtaatcacaa tagtcgcata
    19201 acggataatt tgcatatatt tttgcatact atcacgctct tttttcatct taccaatatt
    19261 tggaaaagtt gctgcaagaa gctccataat aatagaagca gtaatataag gcataatacc
    19321 taaagaaatg atagaaaagc gttcagctgc tccaccacta aaaacattaa ataaacccaa
    19381 agcattgttt tgattgttat taaaaaattc cgcaatcaca tcagcattga cgccaggaac
    19441 tggcacataa gccagaaccc tataagcaaa taaaaatgct aaggtgatta aaatcttatt
    19501 cgtcaatgct ctattcatta ttttgatccg gtgatgctaa tattctcgtc tttgattttt
    19561 gatactaagt cttttgcact tgcaccaatt aatttgattt tattcacaga ttttgaaatt
    19621 ttgtgaacac ttttaatgct ctcaaatgta atttcactaa gctcttttac agctgtgatt
    19681 ttttcaacat tgatcacata aggtttttga attttagaag taaaacctac ttttggtagt
    19741 cttctttgaa gtggttgttg acccccttca aaacctcttt tttcattata accttttcta
    19801 gcagtttgac ctttaccccc tttagtagca gtcttaccca tgccagaacc ttgaccacgg
    19861 ccaattcttt tagttttatg cgttgaaccc gctgcttttg ttaaattcat cttcttatcc
    19921 ttttaacatt gttaaagctt tgattgtagc acgaaccaca ttagctgaat tatttgaacc
    19981 caaagacttg gttaagatgt ctttaatacc tgcaagttcc acgatagggc gtgtagaacc
    20041 acctgcgata actcctgtac cttcgctagc tggtttaagt aaaattctac ttgcgttgta
    20101 tttcacctct acatcgtgag cgatagttga gcctttagtt ttaacttcaa cgatattttt
    20161 aaacgcatcg tcaacagctt tacggatggc atctggaact tccttagcct taccataacc
    20221 aacacctacc aaacctttgc ggtttccaac aataactaaa gcagtaaatc taaatcttct
    20281 accaccttta acaaccttag taactctgcc gatatcgacg attacttctt caaattcttc
    20341 tctattatat ttttccatcg atttacccct tatagcctaa tgccattttc tcttaaagat
    20401 tcagccaatg ctgcgataac accatgatat atataaccat ttctatcaaa aacagcttgt
    20461 tctatctttt tagcttttaa agttttagca aattcagcag cgattttttt agcaccttct
    20521 ttatttgctt taacgccaag tttgcgtcca tcaactgctg ctaaagttac agcttttaca
    20581 tcatcaatcg cttggatata tagagttctg ttcgatttaa atacagaaat tcttggaaaa
    20641 ttttcacaac ctgaaatttt cgctctaatt cttttttttc ttttgattct taaagttagt
    20701 tttcttttta atacatttgc tctcatattc tacccttact tcttagatgt cttaccagct
    20761 ttgcggataa tgcgttcatc agaatactta acgccttttc ctttatatgg ctctggtggt
    20821 ctaaattcac gaatttgagc agcaacttga cctacaactt gtttatcact tcctttaact
    20881 gcaatagtat ttttatccac tacaatttca attccttctg gaatatcata attaatagga
    20941 tgagaaaaac caaggcttag ttctaaaact ttacctttta aagctgcttt ataaccaact
    21001 ccattgattt caagagtttt tgaaaaacct tgagttaaac ctacaacgat attgtaagct
    21061 aaagctctgt aagttcccca ataagctcta ctttgtctgt cttcaccttt tggagaaaaa
    21121 agaatattat tatctttaat ctcaacattt acatttgctt tagtatcaag ttcttttgct
    21181 aaatttcctt ttttaaattt aagcaaattt ccttctaatt ttacttctac tcctgctgga
    21241 atagcaatcg gttgtttacc tatacgagac atatttttcc tttttatttg tctaggatat
    21301 ttctactttt ttaaaagaat ggatacccaa tgccataaaa agcagatttt ttaccaaatg
    21361 gtacataaaa tttcgccgcc aacacctgct ttataagctt catcattagc taaaacgcca
    21421 tgacttgtgc taactacgat agtaccataa ccatttttaa aacgcttgat ttcatcttta
    21481 cctttataaa cacgacgacc aggcttagaa attcttttaa gctcattgat aacactctta
    21541 cctttttcat cgtattttaa aactacattg ataaatttct ttttatcttc ttcaataaca
    21601 ttaaaactct caatatagcc cttagcttga aaaattccaa ctaaagcttc tacaacttta
    21661 gaatgtaaaa gcttggttgt ttcaagcttt ctcattcctg catttctgat acgagtgagt
    21721 gaatctgaaa taatatcatt tatcatattt tatccttacc aacttgcttt cttaagacct
    21781 ggaatcaaac cttcgttgcc catttttctt aagcaaactc tgcaaattcc aaaatctcta
    21841 taaaccgaat gcggacgtcc acaaatttgg catcttgtat aagctctaac tttaaattta
    21901 ggcttgcgtg ccgcttttgc aatcattgat tttttagcca tcttactttc cttttgtaaa
    21961 tggcacaccg ataagttcta ataacttttg tgcctgtttg tcattttgtg ctgttgtaac
    22021 tatagaaatg ttcataccat gagttcttaa aattttatca tactccactt ctgggaacat
    22081 caactgctca tcaagaccga agttatagtt tccgcgtcca tcaaaaccat ctctacttaa
    22141 acctctaaag tctttcaccc ttggcaaagc aatggaaatt aatttatcaa gaaaagcata
    22201 catattttct tttcttaaag ttaccattac acccacagga aaaccttcgc gaactttaaa
    22261 tcctgcaact gattttttag ctttagtaat cacagccttt tgtcctgcaa ttaaagaaat
    22321 agtatctgca acattttgca atactttttg atctttagcc aactcaccag cacctacgct
    22381 gataactact ttttcgatca cagggataag cataggattt ttaatatcaa attctttaac
    22441 caatgcaggt ttaatgcttt gattatattt ttcttttaat ctcatcatcg cttactcctg
    22501 aacttttgcc acattggaaa tatccattgg catttcttta ttgataaaac caccatttgg
    22561 gtttttctca ctcggcttaa tagctttttt agcgatttta catccttcaa ctaccacttt
    22621 aagtgttttt ggatataccg ctaaaacttt acctgtttta cctttatcat cacctgtgat
    22681 aaccttaacg ctatcacctt ttttgatttt taatttaacc gccattataa tacctccggt
    22741 gctagtgaaa cgattttcat aaagccacca tatctaactt ctctgcccac tggcccaaag
    22801 atacgagttc cgataggctc tcttttgttg tcaagaataa ccgcagcatt ttcatcaaaa
    22861 cgaatcaaag aaccattatc tctatgaatt tcttttttag ttctaacgat aaccgctttt
    22921 accacttgac cttttttaac ttttccattt ggtaaagctt ttttaacaga tgcaacgatt
    22981 acatcaccta cggtagcgta tcttcttttg ctacccccta aaaccttgat acacattaat
    23041 tcttttgcac cgctattatc agcaactgca agtcttgtaa aactttgaat cattactcaa
    23101 ctcctgtagc taatacagat tttaagcgaa atgattttct ttttgaaagt ggtctgcatt
    23161 ctactgcaac aacagtatca cccactttaa cttcatttct ctcatcatga attagatatt
    23221 ttttaaagcg tttaacaatt tttctatatc ttggatgaac cacttttctt tcaaccaaaa
    23281 cacttgcggt tttttcacca gcgattttaa caacaacgcc ttgaatttct cttttaaatg
    23341 ccattttcta tccttatctt aaagcgttaa ttgctgtatt tattctagca atgtcttttt
    23401 ttacttggct aatctctttt ggattagtaa gttgcattgt ttttagcttt tgttttaaag
    23461 tgaataaaag cacctttttt tcttttagca ttgttgcaag ctcagctgct gttttatctt
    23521 taatctcagt atatttcatt ttggctctct cttgtaacaa acttagtttt aaatggaagt
    23581 ttatgcatag ctaaagtcaa tgcttctctt gccatttctt cgcttactcc tgccatttca
    23641 taaatgatac gacctggctt gatattcatt acccattcct caacagcacc tttaccttta
    23701 cccatacgag tttctaaagg tttttttgtc aaaggcttat ctggaaaaac tctaatccaa
    23761 gtttttcctt gtcttttaac aaaacgagtt aaagcgatac gcgctgcttc gatttggcgt
    23821 gagttaatgc gtcctgcttc agttgctttt aatgcaaatt caccaaaagt aaattctgtt
    23881 ccacgattag cataacctct gttacgccct ttcatcattt tgcgatattt agttcttttt
    23941 ggcattaaca tgattattta ccccttcttg tgcgtcttgg ctttttagct ggagcacttt
    24001 cttcagtttt ttcaggttgc atacctttgt gcaatacttc acctttaaag atccatactt
    24061 taactcctat gtttccataa gtagttctag cttctgcaaa accataatcg atttttgctc
    24121 ttaaagtatg aagtggaacg cgtccttcaa gataccattc tgttcttgcc atttcagcac
    24181 cgcctaaacg accggaaact gaaactttaa ttcctttagc acctgctttt tgcgcacctt
    24241 ggattacttt tttcattgct cttctaaaag caattctttt ttcaagttga gttgcaacac
    24301 tttcagcagc aagttgagct gaagctcctg cttttctttc ttctttgata ttgatattta
    24361 catctttacc gattaaatct tgcaattctt ttcttaaatt atcaacatca ctaccttttt
    24421 taccgatgat gatacctggt cttgcagcaa ctacagtaac gcgaagtttt ttagcagttc
    24481 tttctactaa aatttggcta attcctgcgt aataaagttt tctttttaag aaagctctga
    24541 ttttgtaatc ttcaccgata ttttctacta aatttgcttt agttggaaac catcttgatt
    24601 cccagtttct attgattcct agtcttagac caattggatt aactttttgt cccattagct
    24661 ttcctttttc gctgttgctt ttttagtgct tgttgttttt ttagctggag cttttgttgt
    24721 agtagttttt ttagctactg tttttttctc ttcagctttc acttccgctt ttaccacttc
    24781 tactaaaata tgtgaagttg gttttctaat acgacttgca cttcctctag ctcttggtct
    24841 aaatcttttt aataccgcag ctgcgtcaac acgacaactt tttacaatca cttcgtttgc
    24901 ttcaaagcca ccatttgcta ctgcacttga aattgcattt gcgatatatt ttgcaccttt
    24961 atttggcata aattttaaac tagccatagc taattctgca ttcatcccct gaacttctct
    25021 agcaatcaat cttgctttag ttgaagataa tcttatgaat ttaattaatg ctttactcat
    25081 atcttatccc ttacttacca attttctttt gcacagagcc tttatgccct ttaaatgtgc
    25141 gtgttggagc aaattcacca agcttataac cgatgtgatt ttcagtaata taaactggaa
    25201 taaagctttt accattatga acattaaatg taagtcctat catatcagga gtaattgtgc
    25261 ttcttcttga ccaagtttta attggtttat tatcattagc ctttttagca gcgatgactt
    25321 ttttcattac atgatcatca acaaaaggac ctttttttag tgatctagcc atcttacttt
    25381 ccttttcttc ttgaaattat tagcttatcg ctagcctttt tacgacgagt tttcgcacct
    25441 ttggttggtt taccccacgg agttactgga tgacggcctg aatttttctt accttcaccc
    25501 ccaccgtgcg ggtgatctac tgggttcatt gcagaaccac gagtttgcgg gcggatacct
    25561 ctatggcgat ttctacctgc tttaccgata gttacattag cccattcttc atttccaact
    25621 tcgccgatac ttgccataca ttcagctaaa acttgtctca tttcgccact tgcaagtctt
    25681 aaaataacat atttttcttc tttacccata agttgtgcat aagcacctgc ggaacggatc
    25741 atttgaccgc ctttacctgg ttttaactca acattatgaa caatagtacc cacaggaatg
    25801 tttttaagtt tcattgcatt gcctggttta atatcaagtc cgctttcagc agctgaaact
    25861 atatcaccaa cgcttaatcc acgtggttga agaatatatc ttttttcccc atctttataa
    25921 gcaatcaaag caattctaca atttctatat ggatcatact cgattgcttc tactttgcct
    25981 tctataccga atttacgacg tttaaaatca ataattctgt aaagtttttt agcacccgct
    26041 tctttatgac gacttgtaat tcttccatag ctgttacgac ccgcgtgtgc tggaagttta
    26101 acaagtagtg agcgtacact tggtttagct gtaatatctt cagaacttaa acctgtgata
    26161 tatcttctac ttggagtata tggtttataa gttttaattg ccatcttaag cctccgtatt
    26221 ttctaagcta acaccttcag gtagcttaac atagaatttt ttgtaattgt ttctttgacc
    26281 taaacgacct ctaaaacgct taatttttcc atccattctt aaggaattga tgctttttgg
    26341 agttacacca aaatactctt ttaaaaccgc ttttaagcct gttttagtca tttttggcga
    26401 agtttgaata actacgacac cttgctcttg caaattcaaa cttttttctg tgtaaagtat
    26461 agtctttata tcagtaatat ctgccataat tatccctctt ttgtaataga ttctaacgct
    26521 gatttttcca taataacagc attaaataca gatactaaat aagcatttac ttcagttaca
    26581 tcaactacat agcaatttgc taaatttctg taagctaaaa gtgttttttc atctagtaaa
    26641 tctttaacga ttaaagcatc tttgacgcca agttttttaa tcacagcgtt tgcatctttt
    26701 gttttaccac tttcaatagc caaagaatca gcagtaaata acacaccttt agctgcttta
    26761 tctgctaaag ctctttcaag cgccaatctt ttttgttttt tatttacttt ttggaagtag
    26821 tttctttcat ttgttggacc aaaagcaacc gcaccgccta cccaaacgtt agttcttgtt
    26881 gaacccgctc tagcaccgcc acgacctttt tgtctccaag gttttttacc accaccactt
    26941 acatcacttc tacctttagt atgagctgta tttgctctta aacttgcaag gtaagatttt
    27001 acatacaagt aaagattgtg tggatttact tccgcatatt ttgaaggtaa atcaagttca
    27061 cctgcttttt ctaatttatc atttaaaaca actactttac tcattttgca atccttattt
    27121 tacccatagc accattataa cctggtactg cacctttaac tactaaaatt ttattttcag
    27181 catcataaga tacaacttcg tttttaacgg tcactttagt atttccatag tgtcctgcca
    27241 ttttcatacc tggttgaaca cgacctggcc attctctatt accaatagat ccatggcgtc
    27301 tgtgaaatct agaaccgtga cttgctggac cccctgcgaa gttatgtctc ttcataacac
    27361 cgctataacc tctaccttta gtgttaaagc ttacttttaa aatttttgct tcatttaatg
    27421 gagtttcatc taaatctcct gcttcagtat ttgctacttc taaagtcgca aatctattgt
    27481 attctgcaga aagattgtat tttttttgtt gtcctgcgac acatttatta cttgctttac
    27541 cttttggata tgctactaaa gcctttccgc cttcaacttc acatactttt gcatttacaa
    27601 ctcttagtaa agttacagcg atacttggat tagtaattgt tctgctcatt ccaatttttt
    27661 ctacaatata ttccatatct tatccttact tacccatagc tcttacttca acgcttactt
    27721 ctggcgctaa atcaagcttc gttaaagaat caactgtatc tggagtcgct gctactatat
    27781 ctagcatacg cgcgtgaatt cttatttcaa actgctcacg agaatctttg ttaatgtgtg
    27841 gagattttaa aactgtatag cgtttgattt tagtaggcat tggtatcgga cctctaatat
    27901 ccgcacctgt tcttttaaca gcttctacga ttgctgcaac tgttctgtct agtactcgat
    27961 ggtcataagc ttttagctta agcctaattc tttccataat atttccttta aaaagaactc
    28021 gttagttaaa aactaaccaa ttttataaaa attgaaatga gagtatataa aatcttgttt
    28081 tcaaagtcaa ggaatttgat gaaatttttc tattattttc cttttaaaaa ggataaaaat
    28141 agaattttta gaatttaaaa attatcatta ttttttaaat ttttgtatat aatggtcaat
    28201 atcttatttc attaaatttt aaaaaatctc ttaatttttt atattcgcca ttttctaaat
    28261 aacgatgttt tcccgccttc aacataccaa gatctaaagc cccaaaagca acacgcttaa
    28321 gatccatgac ttcaagatca aaatgtccaa aaaagcgtct aagctctcta tttttacctt
    28381 catttataac cactctaagc ttagtatagc ctccacttga tccaaaaatt tcaaagtcta
    28441 taaaaggagc aaaactcata gaggtaattt tagtttttgc atgtgcgcct tttttttcat
    28501 ttttaatctc aagtccattt tgcatggctt cgatgacttg tttgctcacc gtgcctttaa
    28561 ctttaaggta gtattctctt tctaaatcgc tatgcattaa agcatcggca atcacaggag
    28621 aatctgtaag caaaagtaag ccttcacttg cataatccag cctacctacg ctaagccaag
    28681 tactaaattg tcttggcaag gtatcatata tagtttttct tccacgatcg tcttttttac
    28741 tgacaatttc acctttttgt ttatggtaga ttatcacgct aaattgcgtt cttttttgta
    28801 ctcttttacc tttaacaaaa actttatcat caaatttaac ttcatcgctt aaaagggcaa
    28861 ttttgttgtt tatttttact aagccttgtt tgataagttc atcggcttca cggcgtgaat
    28921 agcgggtgtt atgggatata aatttattaa ttctcatttg atcttcctta aaaagggcgt
    28981 ttttgccctt ttttacatta caaaaatagt tggaactatg gttgggtatt ttttaatctt
    29041 tctaaagatg tgttttctta aaacttggcg gatttgattt tctaaaaatc ttggatcatt
    29101 gagtacttca tctttaacat tgatgaaaaa ttgtcctaaa acttcagcca tatctttgct
    29161 aaaagcatga tcgtgtttgt cagctactag cccatagcta aatactcttg gtttgttgat
    29221 cagtgttttt gtagctttgt caatttgtgc gataataact actataccac tatctgcaag
    29281 tttttgacga tctataacta catcatcggc gatttgttta ttgatttgat tatctacaaa
    29341 aactttacct gtttttacgg tttttatgcg tttgacatat ttttggcaaa gttctacttg
    29401 atcgccatca ctcataagat aaatatttct ttcagggata ccgcacttca tcgctgtttc
    29461 tttgtgtttg gtgatgtgat tgtattctcc atgaactggt aggaaaaatt taggcttagt
    29521 aagggttagc ataagctttt gctcttctat actagcgtgt ccgcttacat gaatttcact
    29581 aaattcttga tacgctactt tagctcctgc ttttaaaaga tagtcaagca ccgcagaaac
    29641 acttgcttca tttcctggta tggctttagc tgaaataatc acttgatctg taggtttgat
    29701 ttttataaat ttatgctcat cagttgccat tctataaagc gcactcatgg tttcgccttg
    29761 acttcctgta gttacgataa gcacttcatt gtctttatat ttgcttactt catcagcatc
    29821 gatgaaaatt tttctatcaa gtttgatgta gcctaattcc atagtggtat aaagatttct
    29881 ttccatagaa cgaccgatca cacaaacttt tctaccgtat tttaaaccat aagtgatagc
    29941 ttgataaacg cggtggatat tagaactaaa agtactcatg atcaccctgc ctttggtacg
    30001 tgcaaagatt tgatcaaaag ttggccctac ggagctttca ctttttgtat aaccttcttt
    30061 gtacgaattt gtactatcgc ttaaaagaca taaaacccct tcttctccat aatgtgccaa
    30121 acgtcctaag tctgttggat agccatcgat tggagtttga tcaattttaa aatcacctgt
    30181 gtggataatc gttcctgctt ttgttttgat cgcaagtgct gaagcatcaa tgatagaatg
    30241 cgtgatgtgg atccactcta tatcaaattc gcctatctca taaacacggc gtttttctac
    30301 agggcgaaac catttgcgtt ctgcttttaa gccatgttct tcaaatttgt ttgaaatcat
    30361 tcctaaagcc aaaggtgtag cgtagatagg aaattggaat tctttaaaga aataaggcac
    30421 tgcaccgata tgatcttcgt gtgcatgagt gatcactata ccacgaattt tatctttaat
    30481 ttttcttaca tagtcaaaat cagggatgat aatatctacc ccatgcatag ttccatcagg
    30541 aaaactcata cctatatcta ctataattgc atctttattg gtttcaaaaa cactgatatt
    30601 tccaccaatt tctcctaaac ctcctaaagg agtgatgcgg attttatgct cgctagaatt
    30661 attatatttt aaagggtgta agcggttttc atgtgaaaca cggttagctt ctatgcattc
    30721 tgcaagagcg atttgccaat cttcattacc tgtgagtttt gaaggaagat tgcgattttt
    30781 cttctttttt ttctcagttt tattttctga gttttcagaa ttttccttgt tggaattttg
    30841 atcaattttt ggagtatcat tttcattttg caaagaatca gctaattttt ttctacgatt
    30901 tttatattta tagcgtttat tgttttttga atttgagttc ggattttgtt cgtttttatt
    30961 tatctctttg ttttcgtcca tattcatcct ttaatttgtc ataaatttta aggtataaat
    31021 caacgcaaat ttcatgtggt ctgatgtttt cttttaagcc aagagtgctt aaaacttcta
    31081 aaacttttgc tttatatgtt tttaaatttc ctaagagttg ttttctagga gctttaaaac
    31141 aatcttttag aaaatttttg aaattttcta tttcgcaaag ttcatcaaaa tccttagttt
    31201 taatcaaact catcaccgct gacataactt ttggtggagg attaaaacat tgtggatcaa
    31261 catcaaaaag tatttttctt tcgcaaatca ttgcacttaa aacacctaag gaagaaaact
    31321 cactatttcc ttctttagcg cagaattttt cagccatttc cctttgtacc attacaataa
    31381 gccctagaca atttttatct tctaaagctt ttaatataat gtgacttgca acataataag
    31441 gcaaatttgc aaccaaaaaa tatggttttt catcaagact aggattaaaa gcttcgcttg
    31501 cgtcttgatg gatcaagtta aattttccac attcaagttc tttttgaaat ttctttttta
    31561 aaataggtat gagatcatta tcgatttcat aagcttttac ttgagaaatt tttaaaagtt
    31621 cttgcgttaa atcacctaag ccaggcccaa tctcaatgat attgttcatc tctttgggta
    31681 tggcttggat gatttttgct aatacgcttt tatcgattaa aaaattttgt ccgtattgtt
    31741 tttttgcttt aaccataaga aataatttta tctaaaaatt cttaattaag tctttttagg
    31801 tagaattatt tttgtaaaat ttcataagga tcaaaatgat tgtttgtgcg ggtggaaatg
    31861 aaaatttttc ttttgcaaaa gccataggca taggtttggt tgagtcagct tttcatttga
    31921 gtcaacttta cttcaaagaa aaaccatcaa aacttatatt tataggaact tgtgggcttt
    31981 atgataaagg agagatttta gaaatttata gaagttcgca cgcttttaat gtagaatttt
    32041 ctaaaatttc acatgcattt tatactcctg caaaatatga aatttgctta gaaaaagaaa
    32101 atgtttctcg tgaaacaata aaaatcaatt cttcaaatta tatttgtcaa aattcaaaag
    32161 cagcaaaaga attttcaaaa ttaggttttt ttgcagaaaa tatggaagcc ttttctgttt
    32221 tgagcgtagc taaaaattta aatattgatg cagagtgtat tttgtgtgca acaaattttt
    32281 gcaatgaaaa cgctcacgaa gattttataa aaaatcatca aaaggcaaaa gaaaaattag
    32341 aagaatactt aaaaaaatat cattatattt aaaaattcaa aaaaggaaaa taattttgaa
    32401 agagcttgtt aatattttag attttttacc tgaagaatta ggagaaaaaa tcaaaccgat
    32461 gtttcgcgtg aaacaaattt atcaatggat ttatcaaaaa tacgccaata atttttccga
    32521 tatgtcaaat ttaccaaaag atctacgttt agaacttgcg caaaattttc atttctctcc
    32581 tgtaaaatgt gttaaaaatg agcaaagtaa agatggaagt ataaaatatc tttttgaact
    32641 cgttgatggt ttaaggatag aaagtgtgct tttgcctatg aaagaagaaa aaatagacgc
    32701 agaaggcaaa agaatttctc atgcgagata tactatctgt gtttcttctc aagtaggttg
    32761 taaaagtgga tgtagttttt gtcttactgc caagggtggt ttgaaaagaa atttaagtgc
    32821 aggtgagata gtcggacaaa ttttatggat caaaaaacaa aacaatatcc cttatgaacg
    32881 ccgtgtaaat atagtatata tgggtatggg cgagcctttg gataatctta aaaatgtttc
    32941 taaagcggta aaaattttag cgcaaaatga gggacttgct ataagtcctc gccgtcaaac
    33001 catcagtact agcggtttgg caaaacaaat caaagaatta ggtcaaatga atttaggtgt
    33061 tttacttgct atatcattgc atgcggttaa tgatgagctt cgaaccgaac ttatgcctat
    33121 caataaagct tataatatcg ctgcgattat ggatgcggtg cgtgaatttc ctatagatca
    33181 aagaaaaagg gtaatgtttg aatatctttt aattgatggt atcaatgata agcttgaaca
    33241 cgctaaagaa ttagtcaagc ttttaaatgg cattaaagct aaagtgaatt taatactctt
    33301 taatccacat gaaggaagtt tatataaacg ccctagttta gaaaatgcga ttaaattcca
    33361 agatttacta agtaataaag gtgtaacttg tactataaga gaaagtaaag gacttgatat
    33421 ctcagctgct tgtggacagc ttaaagaaag ggcaaaagaa caatgacaat gctagatatt
    33481 ttcgaaatca tttttataac aactgttgta attataggtt ttggtggaat tgtttttgta
    33541 gtaacaaaag aaaaaaaata attattacac ttaatggtgt caagggggag acttgaactc
    33601 ccgacctccg gcttatgaga ccagcgctct aaccagctga gctaccctga ctaaaaataa
    33661 aaatataatt atactacttt ttactaaaaa ttttctgatt tttaaaaaaa taattttatt
    33721 ttcaatattt aaaaaatttc tttattttta aagcttttat agatataatg aacgctttat
    33781 ttcatagaca ggtgtccgag cggttgaagg agcacgcctg gaacgcgtgt aaagtgcaag
    33841 ctttcgaggg ttcgaatccc ttcctgtctg ccatcaaata aactttaagg caaactaagt
    33901 tataatacaa acttcatttg gggcattagc tcagctggga gagcacaacg ctggcagcgt
    33961 tggggtcagc ggttcgaacc cgctatgctc caccatatgg ttccgtagct cagctggtag
    34021 agcactacct tgacatggta gtggccgttg gttcaagtcc aatcggagcc accatcaccc
    34081 ttccttatac aaaggattat catgcaaaac actatcatac aaaaagccat ccataaagat
    34141 ttaaattcta tacttgaaat cacaaaagat gctttaaatg ctatgaaaac tatgaatttt
    34201 caccaatggg atgagaatta tcccaatgaa atagtttttc aagaagatat acaagcacaa
    34261 gaactttatg tgtttaaaga aaatgatgaa attttaggct ttatctgtat caatgaaaaa
    34321 tttgaacctg aattttacaa acaagttatt tttaacaaaa attatgatga taaagccttt
    34381 tatctacacc gtttagctgt caaacaaaat gcaaaaggca aaggcgtagc acaaaaactt
    34441 ttaaattttt gcgaaaattt tgccttggaa aatcacaagg taagtttaag agcagatact
    34501 catagtaaaa attttcctat gaattcgctt tttaaaaagc ttgattttaa tttttgtgga
    34561 aactttgaca tacctaatta ccaagatcct tttttagctt atgaaaaaat tctaaaccaa
    34621 aaagcttttt gagttttttt cataggcttt gatttgtgct tcatgtttta aagttaaagc
    34681 tatattatca agcccttcca aaagacaaat tctgtgaaaa tcatctaaat caaaagaaaa
    34741 aatcttatct ttaaaaaata ctcttttttc caacaaagaa atttctatat ttttatcttg
    34801 ggattttttt aactcatcaa ctatttccaa aacctcatct ttagcaagtt ctatagtgag
    34861 caaaccgttt cctaaggcat tgtttttaaa aatatccgca aaagaaggtg cgataatagc
    34921 tctaatacca taatcaacca aagcccaagg cgcatgctct cttgaagagc cactaccaaa
    34981 attttcaaaa ctcaccaaaa tagagctatt ttgatattct tttttattga gattaaaatc
    35041 catatttaaa acactttctt tatcatctaa ataacgcaaa tcatggaaca aatgcttgcc
    35101 aaaaccttgc ttagacactg caagtaaaaa ttgcttaggt ataatttgat ctgtgtctat
    35161 attggcatat tctaaaggac aagctatacc tttatgtata ataaattttt gcatattaaa
    35221 ctcctaaata ctttctatta tcacaaataa caccttctat ggcacaagct gccgcacttg
    35281 caggactcat caaatgagtg atagaacctt taccttgtct gcctacaaag ttacgatttg
    35341 aagttgaagc aactctttga cctgaatttg ctttgtcatc attcatacca agacacatag
    35401 aacaccctgc atatctccac tcacaccctg cctcgataaa aatcttatcg agtcctaaat
    35461 tttcagcttc ttttcttact tgcattgaac caggcacgat taaagcttta acatttttat
    35521 gaattttgcg cccttttaag atatcagcgg ctattttaag atcttctaaa cgcccatttg
    35581 tgcaagatcc tataaataca atgtcgattt ttaccccttc tataacttga tcttgctcta
    35641 aatttacata agataaagca tcaagcaaag atttttgctc actttgattt ttaaaatcac
    35701 ttatttttgg aattttttca tctataccaa tcacttgcga aggatttgtt ccatagctaa
    35761 tttgtggttt tatcttgctt acatctagag taatactctc atcatatttt gctccttcat
    35821 cgcttcttaa actcttccaa tactcgcaat acttttgaaa ttcttctcct ttaggtgcaa
    35881 attcctttcc cttaatatac tcaaaagtga tctcatcagg agctatcata cctactttag
    35941 ctccaaattc tatagccata ttacaaagag tcattctagc ttccatgctt aaatttttta
    36001 taagttctcc acaaaattct atagcataac ctgtgccttt tgctgtgccg tattgtgcga
    36061 tcaaatacaa aatcaaatcc ttagcataaa cgcctttttg aaactgccct ttacattcga
    36121 ttttcatagt tttaagtttg gcttgtttta aagtttgcgt tgccatgaca tgctctactt
    36181 cactcgtgcc tataccaaag gctaaagctc caaaagcccc atgtgttgcc gtatgagaat
    36241 ccccacaaac taaagtaacc ccaggtaaag taaagccaag ctcaggacct actatatgaa
    36301 ctatgccttg atttttatct ccaagtccta aaagccttac tccaaattcc ttagtatttt
    36361 gcatcaaagt tgtaatttgc tcttttgcca tatcagaaca agcatttaaa tccacacttt
    36421 tagttgaaac atcatgatct atggtagcca aagttaaatc cgctcttgcc attctacgct
    36481 tagccatttt aagccctgaa aatgcttgag ggcttgttac ttcatggatt aaatgtctat
    36541 cgatataaag tataggaagt tcgtttttgc cttcataaac cacatgagca tcaaagactt
    36601 tctcatataa agttttagcc attattattc tcctttaaaa tttctaaaat acaatccccc
    36661 atttcatcgg tatttaaata cgacttagca tttaaatcct tagtcatttt tccttgtgcc
    36721 aatgccaaag atatagcatt ttctatatcc tgtgcggctt gttcttcttt gaaactatac
    36781 tttaacatca aagccgcact taaaatttga gctatgggat tagctatatt taaatgagct
    36841 atatcaggtg cacttccacc tgctggctca taaagtccaa aacctttatc gtttaaactt
    36901 gctgaactta acaaacccaa agatccatta atggcagcta actcatcgct caaaatatca
    36961 ccaaaaagat ttgaacaaag cataacatca aaaatgctag gattttttac aatctgcatc
    37021 gcagcattat ccacatacat gtactctaag tttatatctt gataatcttt tgcaacattt
    37081 gccaccactt ctcgccacaa aatagaactt gctaaaacat tcgccttgtc gattaaatgc
    37141 acttttttct ttcttattct tgcactttca aaagcgatat gggctatcct ttctatctct
    37201 tttttagtgt aaatttcagt atcatacgca ctttccttgc ctaaatcttg cttgccaaaa
    37261 taaatcccac ctgtaagctc tctaacacat aaaatatcca ctcctttttg gataatctca
    37321 ttttttaaag gtgaagcatg agttaaactt tcataaattt tacaaggacg caaatttgca
    37381 aacaaattaa aatgctttct taaaggcaaa agcgaggctc tttcaggtct ttgatctatg
    37441 ggcaaattat cccacttagg cccacccaca gagccaaata aaatcgcatc actttgctca
    37501 caaagcttta aagtttcatc acttaaagcc actccataag catctatact tgcaccgcct
    37561 attttagctt cattaaattc aaaactaaaa ttgtattttt gcgcgataaa agttaaaatt
    37621 tttaaagcct ctttcattac caaaggccct ataccatctc ctgctaagac agctacttta
    37681 taagttttca tgccacattt tcctttcttc tacttttaaa gagcgataaa tcgcattgta
    37741 agcactcaca aaagcttgtg ctgaagcttc tataacatct gttgaaagtc cttttccatg
    37801 gaattttctc cctttaaatt ccaaatccac atccacttgc ccttgagcat ctactcctga
    37861 actttttgca ttgatactat aagcttttaa cacaggcttt aaatttgtta tcctagcaat
    37921 gcagttaaaa actgcttcaa caggaccatt tcctgtgcaa gcttcagttt ttagctcttc
    37981 tttgatacgc atacaaacac aagcggttgg gatattgcca ctaatcacgc ttaatttttc
    38041 aatcacaaat tcattttctt cttcattttc atagcttaaa aacatcaaag cttccaaatc
    38101 ataatcatat acttgaccct ttttatccgc aaggcgtaaa aaacgctcat aaacatcatc
    38161 taaattataa gtattttcat catagcctaa attttcaagg caagttttta tcatagccct
    38221 tccacttctt gccgtcatta acatacgatt ttcatgaatt cctatggcac tagggcttat
    38281 gatctcgtaa gtttgcctat ttttaagcac tccatcttga tgaatgcctg aactatgaga
    38341 aaacgcattg ctacccacta tagctttatg cgaaggtatg ctttcattag tgatagctga
    38401 aactaatttt gaagttttaa agatattttc acatttaata tcagtataaa aaccttttaa
    38461 ataatctttc ctagttttta tcgccataac cacttcttct aaagcacaat tgcccgccct
    38521 ttcgccaagt ccatttatag tgcactctat ctgtcttgca ccttgtaaaa tagcacttaa
    38581 gctattgccc gttgccacac ctaagtcatt gtgacaatgc acagaaatga tagctttgtc
    38641 tatatttggc actttgttaa ataaaatttt gatgatatta gcaaattcac ttggcaaggt
    38701 atagcctact gtatctggga tatttatagt tttagcgcct gcttttatcg cattttccac
    38761 cataaaacaa aggttatcta tcggagttct tcctgcatct tcgcatgaga attctacatc
    38821 atcagtataa gatcttgctc ttataatcgc tctttttgcc atagacaaaa tttcatcaaa
    38881 atcttttttt aatttatctt gcatatgcaa agtcgaagtg gctataaaag tatgaattct
    38941 aaaatgcttt gccactttta aagcttcata agccatatct atatctttat ccaatgctct
    39001 agaaagtgca caaatagttg agtttttcac cttagaagcg atcttttgca ccgctttaaa
    39061 atccccttgt gaagataccg gaaaacctgc ttctataacg tctacgccta aattttcaag
    39121 cgctaaagcg atttgtaatt tttgattgat acccaaagaa ctgcctaaag cttgttctcc
    39181 atcacgcaaa gtggtatcaa agattatgat tttattatct ttcatgattt aatcctttaa
    39241 aaccaaacag actgaatgaa ttaaaaattc aaaaacttaa caacaatgat aaaaaattaa
    39301 aaatgtaaaa aatgattaaa aataaaattg agttttagag tgagagttgc agtagcagat
    39361 taaaagtatt gtctttactt ttttgttgga ctgaatttga aatttcaaaa atttgtttca
    39421 tcttttcctc ctttgttaaa attaatactt aatgtatcat atttttagta aatgtgtttg
    39481 taaaattctt aaattaagaa aattattgat ataattgtaa ttttaagtaa caaaaaggaa
    39541 gttgatgtta aaagaactct tagagattaa aaaagaaatg gaacctgtta tccacgaagc
    39601 caatgtgaaa ttaaatgtcc tagctcgtga agtcatagtc cgaaaaaaag aatacgaaat
    39661 ttatgggcct atggtagatc gtgtttatct tgataatgcc atttatgtta aagttatgtc
    39721 aagtggacgc gatgtaaaaa cagacaatgt gactataaaa aatggttttt atatggtttt
    39781 tgttgcccct gaaaaagaaa gtacaaaaga tatcaaaaat aaactcaaag tagcttatga
    39841 aggacttgat aacaaattta tcgctacact tatacgatct tgccaacgct ttaaagagat
    39901 cataaacaaa acccaagcta cacttgctaa agcttctaaa atgaatgtgg tagtaaaaac
    39961 gaatttaggt gaagcaagtg ctgctctaaa atttaacatc actatagaat atactaaaga
    40021 gaatcaaaaa ctcactcgtg aaaattcaaa atcagcagga agtttcagag atactaaaac
    40081 ttatatcaat cttgtagtag aaaaaaatac agattctcaa atttgtgaaa aactacttga
    40141 tgatgttgaa aaatacttta tcggtggagg ttgatttcat taatgcaagt tataaaaact
    40201 tgcattagat taaaatttat aattatatcc taaatataca ccataatttg tttgtttagg
    40261 atcgtaaaag tttgaaccca ctttattttg ataaaaattt ctagaattat aatgaatttg
    40321 ctctgcttta aagcctaatt ctatttcatt atgtggtgtc aaatcatata aagcacctat
    40381 tttcgctcca taaaaataac cgtcaaaatt ttgcgacaaa gataaaaagc ttgtttttaa
    40441 ggtaagatct gttcttgcat atcctccata cacacctaaa acagctctgg ttttttcaaa
    40501 aagcttagga gtaaaatcat aacctgttaa aaatttatgt gtagtaaaat caccttcgat
    40561 ttgaatttta ggagttttga taaaatcact aaattcatca gaataattat aaccagcata
    40621 aattctatga ttttcattta aacgatatcc aagttttaga ccaaacgatg gtatattacc
    40681 tgaaatatct ccattaaaat tttgctttgt attcttatgt tttaactcac tttttacttg
    40741 agcatgcatc caagctgcat cagcacctat aaaaaaacca gaattctcat ctgctaaagc
    40801 caaatttgaa aacaaagtag cacttgcgat aatgcttaat aattttttat tcataaccta
    40861 actccttata ataaaattcg atctaaaaaa tttagatctt tttatattat atattcttca
    40921 aagattaaat aagaattttt tataaaatac ttaatcttta cataaaaata tgttattatt
    40981 ttacttaaat attattttgg cactaccata tcgctacgac attctatcac cgtatgcaca
    41041 tttccacgcg ggttaaaatc ccccacaact ttaatccatt ttggttttaa tttatctttt
    41101 aaagtattat aaatttcatt gatacttgct tcatgtgaaa catttctata cataaaagta
    41161 ttgatataaa gttttatcgc cttaagctca accacaaatt tattaggcat atactcaaga
    41221 taaatcgtcg caaagtcagg ataacccgaa cgcggacaac aacacataaa ttcaggcaaa
    41281 gtgattttaa tgatatagtc atttttggca tcatttggcc aaatttccat attttctaca
    41341 tcaaattctt tgatttcttt ttcaccataa cgcatgagct ttccttattg aaaattttta
    41401 gaaaattata taaaaaatta cttttagagc aattgaaaaa taaacatttt tagcaaattg
    41461 cataaaaaag acaaatatta tattaaataa agctttttat actagaataa ggcaaatctt
    41521 tcaaaaggaa aaaaatgaga aaatcaattg caattatagg cggtagcatc gcaggactta
    41581 gcgcggcttt atttttcgct tcagctaaaa atgaagaact tgactttgat atcactgttt
    41641 ttgatgaggg taaagcagat ttaaaagcag cagcaattta caatgttcct tttttcccaa
    41701 aaggtgcaaa agcagatgaa atttacactc acataaaagc acaaattgct tctatgctcg
    41761 aagtaaaata catcgattca aaagtagtaa gcataagcgg agaaaaagga gattttactg
    41821 ttaatgatga gcaaggcttg ggtataaaag cagattatat catcgtagca acaggggcaa
    41881 acaaaagcga tatcaaagaa cttgaagatt ttgtaatacc gcatgagctt ataccaaaac
    41941 caaacaaatt ttgcttcaaa catcacggga gacagattat caaagaagga atttacgcag
    42001 caggacttgc ttcaggtgtt acgactatgg tagcttgcgc gatgggaagt gccaatgaag
    42061 cagcttgcgc gattttaagc gatatcaaag gtgcagtaag cgtatatcac gatacaccta
    42121 ctacaagagt ttaaatcatc aaagcacaaa aggtgtgctt tgatacacat cataattgag
    42181 ccaatttgca aaaatggtat ttgcatttga acgccaattg tattttatat tgcccttttt
    42241 atcataataa tttttagctt tttgtatgaa attatctctt acatattctt gatgtaaagt
    42301 ctctttaaaa tattccaaat gccctaaaat aaaaatattc ttttcatctc ttaataaagc
    42361 cgaaccgatt tttttatttc taagcaaaat ttttaatttc ccttgttttt gtagtgctaa
    42421 aatttgctct tcatccatgc tagaatgtct tgaatgaggc attaaaacct tttcatctaa
    42481 atttgttaaa agcagatcag gcgaaacttt atcatgctta tagactccaa aaattttctt
    42541 atctaaagag attttatcca caccataaaa gtattttaaa gcagccatgg caccccaaca
    42601 aatatacata gaacttgtta cattttgctt taaaaaatca aaaatttcta gcaattcttc
    42661 ccagtaagca accttttcaa aatccatttg ttccacagga gctcctgtaa caatagcacc
    42721 atcaaattta tgttttttaa cctcttcaag acccttgtaa aatttttcca aatgagtaaa
    42781 aggagtattt ttacccacat agctagtcgt ggctaaaagt gtgatattta cttgcaaagg
    42841 agaatttgca agtaagctta gaatttgatt ttctgtttca attttttttg acataagatt
    42901 gacaatcaaa atttcttgcg gcctgatatc ttgatgcttt gctctccttg atcccatgat
    42961 aaaagcatgc tcttttaaaa gctcataagc gggtatattt tctggaataa tcagtggcat
    43021 tttttctcct ttatttaata aaccttattt atgataaagc atggtggaat ttttatctca
    43081 ttcactcaat gcaaacacac ttttaacttt ctatagcttg ttttaaatcc gctatcaaat
    43141 catcgctatt ttcaagtcct atgcttaagc gtatagtagc tttcgtaatg cctgcttttt
    43201 ggagttcttc ttcgcttagt tgcgaatgag tagtagaagc aggatggatg atcaaagact
    43261 tgctatcacc caaatttgca gcaagtaaga aaagttgagt tttatcacaa attcttctag
    43321 catgctcata atctttagct tcaaagctta aaagcccgct agcaaaattt ttatcaaaat
    43381 attttttaaa taaattatga taagcattac ttgctaaagt aggataattt acgcccttga
    43441 tatcaggatg agaatttaaa aaattcgcaa ctttttcagc attttgactg tgtttttcta
    43501 tacgcactgc caaggtttca agtccttgta aaagtaacca agcattttga ggtgctaagc
    43561 tagctcctag atctctaagc caagtgatga tgactctaat actaaaaatc ggcaaatcaa
    43621 gtgtatttaa attcagtcca tgataacttg gatcaggagt gttaaaagct ttatatctat
    43681 cgttattttt aagcaagtcg tttaaatctt ttctttctat aagtgctcca cccaaagcag
    43741 tgccttgacc gcttacatat ttacttaaac tatgcacgat tacatccacg ccatgtttaa
    43801 aaggttggag taagaaagga gtagcaacgg tattatcaca aatgctaacg attttatgtt
    43861 tttttgctat ttggtttatt ttttctatat cagctatggc aatttgagga tttgaaagac
    43921 tttcgaaaaa aatcgctttt gtgttttgat ctataacttt ttccaagcta tctaaatcat
    43981 cgatatcaaa ttccctagct tctatgccaa aatttttaag tgtgtgagaa attaaagttt
    44041 gagtcccacc ataaattttg ttcgaatacg cgacattatc tcccgaactt gctaaattga
    44101 taagagcata aaaacaagct gccataccgc tagtaacagg aattccaaaa gcccctcctt
    44161 cgatattagc aagtctttgt cctaaaacat cgcttgtagg attgctaagt cttgagtaaa
    44221 tattgccaag ttcttgaaga ttaaaccttg ctgcagcttg atccaaattt tcaaaattat
    44281 acgcagtgtt ttgatatata ggcacactaa tacttctttg agtatcaaaa ttataagctc
    44341 cgtgtaatgc taaagtttct ttattgaaat tcatttttta tccttattgt gtcaatgaaa
    44401 aaatgttaaa aagcttttta tcggctttaa attaggctat ttgaaaatgt aaatttatag
    44461 aatatgagta tatacgagta gattaagcgt gccaagcacg catacagaaa gaagaaagca
    44521 ttaagttaaa actaatataa gacatttttt ctcctttcta aaaaattatt gattattcta
    44581 tctttaaaaa ataaaattaa aattaaattt taaaaaattt atatcacatt gcttaaaatt
    44641 ttattgcaac tcacccctag caagagtgag ttagcaataa attgaaggca gttcaagcct
    44701 aagcctagta ttacaagact accaagatag gcttgtaaag caaggcttgc tccctttaag
    44761 ggagcaaaaa acaatatttt atagaatact aagcttaaat tattgtttaa gctggattag
    44821 agtttgaagc atttgatcac tcgttgaaat ggtttttgag tttgcttgat aacctctttg
    44881 aatgatgata agctctgtta aagaacgact taaatccaca tttgacattt caagagctga
    44941 ggttttcatc tcaccacgac ctcctgttcc tgcttcacct actactatag ccccactatt
    45001 tgcagtgact ttaaaaagat ttccgccgat ttcttcaagg cctgagttat ttgctactga
    45061 agccatcgcc atttttgcca cagcgaaggt tttaccattt gtaaattcac ctaagatatt
    45121 tcctttatca tccacacgga tagcatcagg ctttaagtta cctgaagtat aaccatcagt
    45181 tgcttgtcct gttagagttg aagcagaatt tgagcttaca aggccgtcat tgcttccact
    45241 tgttccaaag ctaagtttta tttgttgatt tggtgcggca ccattgtttg gtgagaaatt
    45301 tatagttttt ggactataat ttgccaaaga gccatcattg ttaaatcttg ccgttcctac
    45361 gacgatattg tttggtcctt cgcctgtagt gttaatctca gcaggttctg gcacacggat
    45421 gatcatctgc cattcattac caccatcttg agttgtgctt tgttttacaa attgcacttc
    45481 tatagtgtgt tttgatccta aagagtcaaa tatctcaagt ccagcagaaa atgcacttaa
    45541 gaaaagttgt tcgctttggc gatttgaatt tcctactgtt aaaactccat caaaaccttt
    45601 aaatatattt gtaaatgcca tatttgtgct tactttgcct tttgcatctg tataagctgt
    45661 aacattaaaa cttatatcat gaggtcttct attattttga actataccat ttggaggagt
    45721 tgattgaaca tttggatttg atattataaa ttcacctgtt gcaccaactg ttacttttac
    45781 accttcatta acatcactac catcagcttc aaatccacca cttccatcat aatcaacacc
    45841 atatctagca tctctttgta aaagttctct taaatcttca gtagttctaa aagttcttac
    45901 tgttgtattt aataaagaac cattaacggc attacgatag ttattttcag ctgttccagg
    45961 tgtgtttata ttggcttgat taaaagcagg accaccatct ggattataca taggatctag
    46021 ttgaactgga gttgaactgt atacatattt atgcgctgtt actatttgta ttctttcagt
    46081 tccatttaca ggattatttc caggtatcca tactgagttt gcaccttgtt ttctagatgc
    46141 agcttgaaaa ctattattat ttgcttgcca tgtaagattg tgtctttctc cggctgtatt
    46201 tgcttgattt acaaccaagt ctatattttt catattatct gtagtgccat cagcattagt
    46261 atttataaat tctataccgc taccatcggc ttttcttact gcttttactc ccgttccttc
    46321 tcttgtatct gtaggagctg taaaagtatt tatgtattct atagcttgat ctaaactttt
    46381 tatagaatta ttttgtattc taactccatt taatgttata tcaagattta cagcattgtt
    46441 ttcatctccc caaaatataa caccattttg agtagcttga gtatttggat taaatacatt
    46501 tacaccattt ggaacatctg tgctaaattt agaatctgca tagcttaccc atataccttg
    46561 tccatctctt aaatttaaac catcgccttt accattaaat aaagcagcac agtcaacccc
    46621 tttttctgta acttctactg aattttttga agttgtgtaa aattgagtta tacctgtatc
    46681 attttcattt tttgcagttc catctttttt gttaaaacca tgaacagaat caagtccata
    46741 tataggagtt tttgctgttc ctacgcttaa accactattt aaattcgctt tgatggctac
    46801 ttcggttgat tttgctgcag ggatatgcat accgggatcg ataaaaatat tttgcggagt
    46861 tcttgagcta tctatacttt gagtatccca gttgatattc cacccttgga caacaaaacc
    46921 tgcattatta acaaaatttc cataagcatc tagtttaaaa tccccgctcc ttgtaagata
    46981 gcgagtaagc cccccatcat cactcaccat aaaaaaacca tcaccattta tagccacatc
    47041 agtgttttta tctgtggttt gaactgaacc ttgagaatga attctagttg tagaacttac
    47101 tgaaacgcca agaccgattt gaagtggatt agatccacct cttccatcag ttggagctgt
    47161 agcgattttc acagtttggc taaacatagt cccaaaatct gcacgggagt atttaaaacc
    47221 agtggtatta acatttgaaa tgttattacc ttcaacatcc atcgcaactt gatgtgcttg
    47281 tagtccgctt acgccagacc aaagtgatct catcatctta aatcctttat aaaatattgc
    47341 tttaaaaaat ttaacgcttt ggctttaaaa aacttttgcg tttatgtgaa gtttacaagc
    47401 aagttctgtt ccaacttttg aaatttttta tgaatttttt aaaaatttat agaaaaaatt
    47461 taaaggtatt ttgggagttt atgaagcttt ggtcttttgt gtaatgaaaa ttaccaaaat
    47521 cacaccctaa ctcttaaatt tgctgcatgg gttaaagcca ctgcgatagc atctgtgata
    47581 tccaaaggct tgatatcttt actaagtcct aaaagccttt ttaccataaa agcaacttgt
    47641 tctttagttg ctttggcttt tcctgtaacg gcttttttca cttgtaaggg agtgtattct
    47701 gcaaagtctc catgaatttg aagaattttt aaagataggg ctccgcgaaa ttgtgcgagt
    47761 tttaaaacgg tttttggatt gtaagcaaaa aagatatctt ctatagccac ctcatcaaaa
    47821 gaatgatttt taaaaatcaa gtccaaaccc tcgcaaagct ctgtgatttg atactgtaag
    47881 gtacttggct ttatctttat aagtcctgct tctatgagaa tgttttttcc tttgtcagct
    47941 tctatgatag cataaccgca atttctcgaa cctggatcta tacctaaaat tttcaaattc
    48001 ataccttttg aaaaataaaa tacaaaagcg gattttaacc tttttttata aaatttaaga
    48061 taaaatttat acattatgca aaatttaaag agagattatg aatccaagcc aaatacttga
    48121 aaatttaaaa aaagaattaa acgaaaacga atacgaaaac tatttatcaa atttaaaatt
    48181 caacgaaaaa caaagcaaag cagatctttt agtttttaac gctccaaatg aactcatggc
    48241 taaattcata caaacaaaat acggcaaaaa aatcgcgcat ttttatgaag tgcaaagtgg
    48301 aaataaagcc atcataaaca tacaagcaca aagtgctaaa caaagcaaca aaagcacaaa
    48361 aatcgacata gctcatataa aggcacaaag cacgatttta aatccttctt ttacttttga
    48421 aagttttgtt gtgggggatt ctaacaaata cgcttatgga gcatgtaaag ctataataca
    48481 taaagacaag cttggaaaac tttataatcc tatctttgtt tatgggccta caggacttgg
    48541 aaaaacacat ttacttcaag cagttggaaa tgcaagctta gaaatgggaa aaaaagtaat
    48601 ttatgctacc agtgaaaatt ttatcaatga ttttacttca aatttaaaaa atggctcttt
    48661 agataaattt catgaaaaat atagaaactg cgatgtttta cttatagatg atgtgcagtt
    48721 tttaggaaaa accgataaaa ttcaagaaga atttttcttt atatttaatg aaatcaaaaa
    48781 taacgatgga caaatcatca tgacttcaga caatccaccc aacatgctaa aaggtataac
    48841 cgaacgctta aaaagtcgtt ttgcacatgg gatcatagct gatataactc cacctcaact
    48901 agatacaaaa atagccatca taagaaaaaa atgtgaattt aacgatatca atctttctaa
    48961 tgatatcata aactatatcg ctacttcttt aggggataat ataagagaaa tcgaaggtat
    49021 catcataagt ttaaatgctt atgcaaccat actaggacaa gaaatcacac tcgaacttgc
    49081 caaaagtgtg atgaaagatc atatcaaaga aaagaaagaa aatatcacta tagatgacat
    49141 tttatctttg gtatgtaaag aatttaacat caaaccaagc gatgtgaaat ccaataaaaa
    49201 aactcaaaat atagtcacag caagacgcat tgtgatttac ctagctaggg cacttacggc
    49261 tttgactatg ccacaacttg cgaattattt tgaaatgaaa gatcatacag ctatttcaca
    49321 taatgttaaa aaaatcacag aaatgataga aaatgatggt tctttaaaag caaaaatcga
    49381 agaacttaaa aacaaaattc ttgttaaaag tcaaagttaa gtgaaaggat gtgaaaaata
    49441 aattctagag tgtgaaaaaa agaaattaag caaagtatga taaaatacaa atttgattat
    49501 tttgctttga agaatttcac aatttcaaca agcttattat tacaacgaat ttaaaattaa
    49561 aataaaccaa ggagaaaaaa tgaagttaag tatcaataaa aatactttag aatctgcagt
    49621 gattttatgt aatgcttatg tagaaaaaaa agactcaagc accattactt ctcatctttt
    49681 ttttcatgct gatgaagata aacttcttat tagagctagt gattatgaaa taggtatcaa
    49741 ctataaaata aaaaaaatcc gcgtagaatc aagtggtttt gctactgcaa atgcaaaaag
    49801 tattgcagat gttattaaaa gcttaaacaa tgaagaagtt gttttagaaa ccattgataa
    49861 tttcttattt ataagacaaa aaagcacaaa atacaaactt cctatgttta atcatgaaga
    49921 ttttccaaat tttccaaata cagaaggaaa aaaccaattt gacattgatt caagtgactt
    49981 aagtcgttct cttaaaaaga tattaccaag tattgataca aacaacccaa aatactcctt
    50041 aaatggtgca tttttagata taaaaacaga taaaattaac ttcgtaggaa ctgatacaaa
    50101 acgccttgca atctatactt tagaaaaagc aaataatcaa gaatttagtt ttagtatccc
    50161 taaaaaagct attatggaaa tgcaaaaact tttctatgaa aaaatagaaa ttttttatga
    50221 tcaaaatatg cttatcgcta aaaatgaaaa ctttgaattc tttacaaaac ttatcaatga
    50281 taaatttcca gattatgaaa aagttatacc aaaaactttc aaacaagaac tcaacttttc
    50341 aactgaagat tttatagata gtcttaaaaa aatcagcgtt gtaactgaaa aaatgaaact
    50401 tcattttaac aaagataaaa tcatctttga aggtataagt ttagacaata tggaagcaaa
    50461 aacagagctt gaaattcaaa caggagtaag tgaagaattt aatcttacta taaaaatcaa
    50521 atatttactt gatttcttaa cttctataga agaagaaaaa ttcactttaa gtgtaaatga
    50581 acctaattca gcatttatag tcaaatccca aggactatca atgattatta tgcctatgat
    50641 tttgtaataa aacaagtaaa agataaagga aaaatatgca agaaaattac ggtgcgagta
    50701 atattaaagt cctaaaaggc ctagaagctg ttagaaaacg cccaggtatg tatataggag
    50761 atacaaacat aggcggactt catcatatga tttatgaagt tgtggataat tctatcgatg
    50821 aagctatggc aggacattgt gatactatag atgtagaaat cactactgaa ggaagctgta
    50881 tagttagtga taatggtcgt ggtattcctg ttgatatgca cccaactgaa aatatgccaa
    50941 ctttaactgt tgttttaact gtcctacatg cagggggaaa attcgataaa gatacttaca
    51001 aagtttcagg cggtttgcac ggtgttgggg tttcagttgt aaatgcactc tctaaaaaac
    51061 ttgtagctac agttgaaaga aatggagaaa tttatcgtca agaattttca gaaggtaaag
    51121 ttatcagtga atttggtgtg ataggaaaaa gtaaaaaaac aggaacaact atagaatttt
    51181 ggcctgatga tcaaattttt gaagtgactg aatttgatta tgaaattttg gctaaaagat
    51241 ttcgtgaact tgcatactta aatccaaaaa tcactataaa ttttaaagat aaccgcgtag
    51301 gcaaacatga aagttttcac tttgaaggtg gaatttctca gtttgttaca gacttaaata
    51361 aaaaagaagc tttaactaaa gcaattttct ttagcgtaga tgaagaagat gtaaatgttg
    51421 aagtagcttt gctttacaat gatacttata gtgaaaattt actctctttt gtaaataata
    51481 tcaaaactcc agatggtgga acacacgaag ctggttttag aatgggttta actcgtgtga
    51541 taagtaacta tatagaagca aatgcaagtg ctagagaaaa ggataataaa atcacgggtg
    51601 atgatgtgcg tgaaggtttg atcgctattg tgagtgtaaa ggtgcctgaa ccacaatttg
    51661 aaggacaaac caaaggaaaa cttggttcaa cttatgtgcg tcctatagtt tcaaaagcaa
    51721 gttttgaata tttgactaaa tattttgaag aaaatcctat cgaagctaaa gctataatga
    51781 ataaagcttt aatggcagct agaggaagag aagcagcgaa aaaagctaga gaattaacgc
    51841 gtaaaaaaga aagtttaagc gtaggaactt taccagggaa attagctgat tgtcaaagta
    51901 aagatccaag tgaaagtgaa atttatcttg tggaagggga ttctgcagga ggttctgcaa
    51961 aacaaggtag agaaagatct tttcaagcta tactgccttt gcgtggtaaa attttaaatg
    52021 ttgaaaaagc aagattagat aaaattttaa aatctgagca aattcaaaat atgattaccg
    52081 cttttggctg tggtataggt gaagattttg atctttcaaa acttagatat cataaaatca
    52141 tcatcatgac agatgcggat gttgatggat cacatataca aaccttgctt ttaactttct
    52201 tcttccgttt tatgaatgaa cttgtagcaa atggacatat ttatctagca caaccacctt
    52261 tatatcttta taaaaaagct aaaaagcaaa tttatttaaa ggatgaaaaa gctttgagcg
    52321 aatacctgat agaaacagga atagaaggtt taaactatga aggtatagga atgaatgatt
    52381 taaaagatta tttaaaaatc gttgcagctt atcgtgcgat tttaaaagat cttgaaaagc
    52441 gttttaatgt gatttctgtg atacgctata tgatagaaaa ttcaaattta gttaaaggaa
    52501 ataatgaaga attatttagt gtaatcaaac aatttttaga aacacaagga cacaatatct
    52561 taaatcatta tatcaacgaa aatgaaattc gagctttcgt tcaaactcaa aatggcttag
    52621 aagaacttgt gatcaatgaa gaacttttca ctcatccact atatgaagaa gcaaattata
    52681 tttttgataa gattaaagat agaggcttgg aatttgataa agatatttta gaagttcttg
    52741 aagatgttga aaccaatgct aaaaaaggtg ctactataca acgctataaa ggtttagggg
    52801 aaatgaatcc tgagcaactt tgggaaacta caatggatcc aagcgtaaga agacttttaa
    52861 aaatcactat tgaagatgca caaagtgcaa atgatacctt taatctcttt atgggtgatg
    52921 aggttgaacc aagacgcgat tatatccaag cacacgctaa agatgtaaag catttggatg
    52981 tgtaaattta tcattgaaga aatcatttct tcaatgagtt ttgttttgta agagtatagc
    53041 tagaggaatt cttcttcttg tatcgtattt ttctccataa tatttttcaa gataatttaa
    53101 aattttttct tcatcttcag gttctatttc ccaaagtcct tcactatctt gcatccatct
    53161 tatagctgct aaccaagctt ttctacttgc atgcatatta gtaatgagat tggatccatg
    53221 acaagctaaa caatttgctt ccactaaagg tgaatcagga tcgataatca atcctgtatc
    53281 agggttaatt tcaagatttt gagcccaact tgcacttaaa aacaatgcta agatcaatat
    53341 aatttttttc atacttaaac tccataaaca ttaactctat ggcatgcatt attgatatat
    53401 cctcctggat tccactgtgc taaaaccata ggttgactgt taccttgact atcgatagct
    53461 cttgcccaaa tttcataata tccttttgtt ggtattgata tttgagcact ccatttttgc
    53521 catgctaatc tatttaatgg tttttctacc tttgctttag tccatgttac gccataatca
    53581 ttgcttatat aaacttcact aacttcaagt tctccagccc aagctttacc tctaacttca
    53641 aattttttat ttgcttttat ttcagaacca tttttgatat tagtaattac agatcttata
    53701 ggcattgatt ctatgatttt catctcgcct ttatagttaa aatctcctgg ttttaccgga
    53761 tttacaggaa ctttataaga accttccatt ttttcaccat catgaatttt atttcttact
    53821 gaaattttat aaagccattt accgcttgta cttgcagggt aaccaccaca aacaagtcta
    53881 agtggatagc cattgactaa aggaatatct ttgccttcat aagcccaagc tattagagtt
    53941 tcatcttgta aagctttaga aataggaact cctctactaa taggtgaagt ttcttcacca
    54001 tttaattttg tatctatgcc ataatatccg atataaaccg catcattttt gatgccacaa
    54061 tcttttaaaa tatcttttaa acgcactcct gtccatctac cgcaagctac tgcaccataa
    54121 ccccattgag ttccttttgt gctaggtata acttcggatc taccatttcc accgcattca
    54181 actgttaagg cataagtata ggttttaaat ttctttttta aatcttctat ggtgtaagat
    54241 tttttattga taatgctttc tccattgatt tctaaagtcc aacctttgtg aagtctttct
    54301 tttatcgttt ctaggcttgg tggtaagcca ttatttctaa caaagaaatt ttcaggtttg
    54361 gtaaaatcag aatcaagagc ataaatttca gtttctgctg ttaatggttt ttcgccatgg
    54421 tagataagat cttttttacc ttctatttta aaatcaggca attcttttgc caaagcctta
    54481 cttcctaaaa aattctcaaa agaaaaattt gacaatacac tgatgccaag caaaccaaat
    54541 cctatatttt ttaagaaatt tctgcgatct tctttttgat tgttttgttt cattgaaata
    54601 tccttatatt tttatgattt tttttatttt attataaatt ttaggaattt aaataattga
    54661 ttatattaat ctttttgatt aaaaaaaata attattttta taattttgca tattaaaata
    54721 aaatcatcat atgttcgagt tttattacat tttaactaag ttttttctac aattaaattt
    54781 ttaaaattat ttaaggaata attttgactt tacttactaa tcctattatt atcagtgttg
    54841 ttttgatgac tttactttgt ttgtttcgtt ttaatgtact tttgagtctt ttgatctcag
    54901 ctcttgttgc aggtgtattt tctcatcttg aactcgtaga tactatgaat atacttataa
    54961 gcggaatgaa agaaaattta aaaacagctc ttagctatat acttttaggg gccattgccg
    55021 cagcgatttc aaagacaaat ttaactgcat atttgattaa gatagtaagt cattttatat
    55081 ctcataaaaa atatttattg cttttgtcta tagctttgat ttcttgtttt tctcaaaatt
    55141 taattcctat tcatgtggct tttatacctt tgttgattcc acctctttta agtcttttta
    55201 ataaacttaa aatcgatcgt agagcggttg cttgtgcttt aacttttgga cttactacgc
    55261 cttatatggt tttgccagta ggctttggac ttacttttca agatctttta aaagataatt
    55321 taaatgcaaa taatgtaagt gtatctttaa atgatgttac aaatactatg tatttcgctg
    55381 ctatttgtat gatagcagga ctttttctag cgctttttgt gttttatcgt aagtcaagag
    55441 agtatcaaga agtagaaatt gctaaagtgg atttagaaaa tcttgaaatg acgcgtaaag
    55501 aatggggtgt tttagctggg cttgttttaa ctttaatttt gcaaattttg actatgaatt
    55561 tacctttatc agggcttttg ggttttgttt taatggttat tttgggtgga gttgaatttt
    55621 caaaagtcaa tgaagttttt gatgatgggc ttaaaatgat gggttttata gcttttgtta
    55681 tccttgttgc tgcaggatat ggagaagttt taaaagaaag tggatcagta gtagatcttg
    55741 taaattcagt cgttccttgg atggagcaaa gtaaattttt agcagtattt ttcatgcttt
    55801 taataggact tatcatcact atgggtatag gtacttcttt tggaactata cctatcatag
    55861 ctacgctttt ttgtcctatt tgtttggaac ttggttttag tacagcactt attatattta
    55921 tcttaggagt agcaggagct ttaggagatg caggaagtcc agccagtgaa acaaccatgg
    55981 gaactactgt aggattaaat gctgataaac aacacgatca cattaaagat acttgcatac
    56041 caacttttat tttttataat ggtccattat tgattttggg tagtattatc gccatgtttt
    56101 tataattttt gcaaatctat caaaatattt tttaatttat ttatttttaa gataaaaatt
    56161 atatcgattt taaaaaaatg tatgctataa tccttataaa gctaacaaaa tttaaatcag
    56221 tcttataagg agagcaaaat ggatttagaa aatatcctag aaaataatca aagcataggt
    56281 ttataccacc caaagaacga acacgatgcc tgtggtatcg ctgcagttgc taatatacgc
    56341 ggtattgctt cttataaggt tatttgtgat gctttagaaa ttttgatgaa tcttgaacac
    56401 cgaggtggtg caggagctga agaaaattca ggtgatgggg cggggatttt aatccaaatt
    56461 ccacatgatt tttttaaaac tcaagaattg ggttttgaac ttcctaaaaa gggtgattat
    56521 gctgtagcac agatgttttt atcacccaat actgatgcaa aagaagaagc aaaagaaata
    56581 tttttacaag gtttaaagga taaaaaactt gaatttttag gttttagaga agtgcctttt
    56641 aatcctagcg atataggtgc aagtgcttta aaagctatgc cttatttttt acaagccttt
    56701 gtgaaaaaac caagtaaaat aagtgcagga cttgagtttg aaagagtgct ttatagtacg
    56761 cgtcgactta tagaaaaaag agctattaat gtgccaaaat tttatttttc aagtttttct
    56821 tcacgcacca tagtttataa aggaatgctt ctttcaactc aattgagcga tttttatctt
    56881 gattttaaag atgtcaatat gaaatcagcc atcgctttgg tgcattctcg cttttcgact
    56941 aataccttcc caagttggga aagagcccat ccaaaccgtt atatggtgca taatggagag
    57001 attaatacca tacgcggaaa tgttgatagc ataagagcta gagaaggctt gatgcaaagt
    57061 gagtattttg aaaatttaga tgaaattttt cctatcatag ctaagcctag cagtgattct
    57121 gcaatgtttg ataatacttt agaattttta gctctaaatg gtcgtacttt agaagaagct
    57181 tttatgatga tggtgccaga accttggcat aaaaatgaaa atatggaaag caaaaagcgt
    57241 gctttttatg aatatcattc tttattgatg gagccttggg atgggcctgc tgctatagtt
    57301 tttactgatg gagtgattat gggggcgagt ttggatagaa atggttttcg tccttcaagg
    57361 tattatctta caaaagatga tatgctcata ctttcaagtg aaacaggggc tttaaaactt
    57421 gatgaaaaaa atatcaaagc caaaaaacgc ttagaacctg gaaaactttt actcgttgat
    57481 acagcaagag gtagggttat agctgataat gaaatcaaag agcattatgc taatgctaag
    57541 ccttataaaa aatggcttaa aaatttagtt gaacttgaaa aacaaaaaag cggagtttat
    57601 aaacatcagt ttttaaaaga agatgaggtt ttaaaactcc aaaaagcttt tggttggagt
    57661 tatgatgagc ttaaaatgag tgtggctgct atggctcaaa atggtaaaga agctatagca
    57721 gctatgggtg tagatactcc tttggctata ctttctaaaa cttatcaacc tttgtataat
    57781 tattttaaac aactttttgc acaagtaact aatcctcctc ttgatgccat aagagaagag
    57841 attgttactt ctacaaggat ttatctagga agcgaaggca atttattaaa acctgatgaa
    57901 aacaatgcaa aacgcgtaaa aatagccttg cctgtgataa gcaatgaaga actttttgaa
    57961 gttaaggctt taaataaatt tcaagttaaa gaattttcta tactttatga ttattctaaa
    58021 aaaactttag aaaaggcttt agatgagctt tgcgttaaga tagaagatga ggttaaaaaa
    58081 ggtgtttcta ttatcatttt aagcgataaa ggagtggatg aaaaaaacgc ttatatcccc
    58141 gctttgcttg ctgtttctgg agtgcataat catctagtaa gaaaaaattt aagaacacac
    58201 acaagtctta ttatcgaaag tggtgaacct agagaaattc atcattttgc atgtctttta
    58261 ggttatggtg cgactgttat taatccttat ttggtttatg agagcataca aaaactcatt
    58321 gccaataaag atttaaattt aagttatgaa aaggcggtag aaaatttcat caaggcaagt
    58381 tcaagtggca tagtcaaaat tgcttctaaa atgggagttt ctaccttgca aagttataat
    58441 ggctctgcac tttttgaatg tctgggctta agctctaaag tgattgataa atacttcact
    58501 tctacaactt cacgcattga aggtatggat ttagaagatt ttgaaaaaga gctcattgct
    58561 ttacataaac atgcttttaa cgatacgcat aaggctttag attctaaagg aattcatggt
    58621 tttagaagtg ctaaagaaga acatttaatc gatccacttg tgatttttaa tcttcagcaa
    58681 gcctgtcgca acaaagacta taaaagcttt aaaaaatact cggctttagt agatgaaaaa
    58741 caagttaatt tgcgttcttt gatggaattt gattttagtg aagctatcag tatagataag
    58801 gttgaaagtg tagaaagtat agttaaacgc tttagaacag gggcgatgag ttatggttct
    58861 atttctaaag aagcacacga gtgtttagca caggctatga ataaaatagg tgctaaatca
    58921 aattcaggtg aaggtggtga ggatgaagaa cgctatgaaa tcaaagaggg tgtggataaa
    58981 aactcagcca ttaagcaagt agcaagtggg cgttttggcg tggatttaaa ctacttaagt
    59041 catgcaaaag aaattcaaat caaagtcgct caaggtgcaa aaccaggtga gggcggacaa
    59101 ttaatgggct ttaaagtcta tccttggata gctaaggcta gacattctac tgcaggtgtg
    59161 acgcttattt ccccacctcc tcatcatgat atttattcta tagaagattt ggctcaactt
    59221 atttatgacc taaaaaatgc taacaaagac gctaaaattt cagtaaaact tgtaagcgaa
    59281 aatggcatag gaacggttgc tgcaggtgtg gctaaggcag gcgcgaattt aatccttgtt
    59341 tcaggttatg atggaggtac gggtgcaagt cctagaactt ctataccgca tgctggaatt
    59401 ccttgggagt taggcttagc tgaaacgcat caaactttga tcttaaataa gcttagagat
    59461 agggtaagat tagaaactga tggaaagctt atgaatgggc gtgatttagc catagcagca
    59521 cttttaggag ctgaagaatt tggttttgca accgcgcctt tgattgtttt aggttgtaca
    59581 atgatgagag tttgtcatct aaatacctgt ccttttggta tagccactca agatacagaa
    59641 cttagagatc gtttcaaagg caaagtagat gatgtgatta atttcatgta ttttatagcc
    59701 caggagctta gagaatacat ggcaaggctt ggttttgaac gcctagatga tatgataggt
    59761 cgcgtggata aactccgcca aaaaagtgtg caaggtaaag caggaaagct aaatttagat
    59821 aaaattttaa aatccttgcc tacttataat agaaccgctg tgcattttaa agattataaa
    59881 gacaataaac ttgaaaaaac gattgattat agaattttac taccactttg taaaaatgct
    59941 gtggagaaaa aagagcctat caaactttct ttagaagtag gaaatcaaag tcgtactttt
    60001 gcaactatgc tttcaagtga aattttaaaa acttatggaa aagatgcttt agatgaagat
    60061 agtatccata tcaaagctat aggcaatgca ggcaatagct ttggagcgtt tttgttaaag
    60121 ggtattaaac ttgagattat aggcgatagc aatgattatt taggcaaggg tttaagtggt
    60181 ggtaaaatca tagcaaaaat ttcaaatgaa gccacttttt cacctgaaga aaatatcatc
    60241 gcaggaaatg cttgtttata cggagctaca aaaggtgaag tgtatttaga tggtatagca
    60301 ggggaaagat tttgtgtaag aaattcaggg gctttggctg tggttttagg aacaggcgtg
    60361 catggttgtg aatatatgac aggtggacaa gttgtagttc ttggagatgt gggtgcgaat
    60421 ttcgctgctg gtatgagtgg gggcgttgtt tatatctttg gaagacacaa tgaagctcat
    60481 gtaaataccg agcttgtgga tattaaagat cttaatgcta aggatgaaaa agaattaaaa
    60541 gctgtgatag aaaaacatat cacttataca gattctaaaa aggctaaaga tattttagaa
    60601 aaattcgata aaaaagactt ttttaaagtc atgccaagag attatgaaaa gatgttaaaa
    60661 atgcttgatc tttgtaaaaa tgaaaaagat ccaaatttag cagcattttt gaaaatcaca
    60721 caaaaataag gagtaaaaat gggaaatgca agaggttttt tagactttaa aagaatggat
    60781 tttaaaaaaa ttgctcctaa agaaagggtt ttaaatttca aagaatttac tatacctttg
    60841 gataaaaaag aacaagaaat tcaaggtgga cgatgtatgg attgtggggt agctttttgt
    60901 catacgggtg tgatgagcga aggaaaagat gtgggctgtc ctttaaacaa tctcattcct
    60961 gaatggaacg atcttgttta tcgttcttta tggaaagaag cttatgaaag acttgatctt
    61021 accaatcctt ttcctgaatt taccggtcgt gtttgccctg ctccttgtga ggattcttgt
    61081 gtgtgtgcga taaatggtgt tagtgtgagc ataaaaaata atgaattatc cattatagaa
    61141 aatgctttta aggaaaattt agtaagagta aataaaccta agcaatacaa tggcaaaaaa
    61201 atcgctgtca taggaagtgg gcctgctggg cttgcttgtg ccaatacttt aaattcacta
    61261 ggttataaag taagtgtttt tgaaagaagc gataaaatag gcggactttt gatgtatggc
    61321 atccctgata tgaagcttga taaaagtata gttcaaagac gggtggattt gcttaaaaaa
    61381 agtgggattg aatttaaagt gaatgaaaat atagacagca aagataaggt ttcaaaactt
    61441 ctaaaagaat ttgatgcttt ggtgctttgt acaggagcaa gtaagcctat agatcttgat
    61501 atagaaggta gaaagctaaa aggggttgaa tttgcccttg attttttaac gcaaaatacc
    61561 aaaactttgt taaaaacagg caagggtgca gatatggcca aaggtaaaaa tgtcttggtt
    61621 ataggaagcg gggatacaag tgtggattgt atcgctgtag cgacaagaca aggggctaaa
    61681 tctatagtgc gttttgaaag aagtccaaaa agacctttgc aaagaagcca aaacaatcct
    61741 tggcctttaa aagctgacat ttttactact gattatggtt tagaagaagc cattgctgta
    61801 tatggcaaag atcctaggga atatcaaaaa atgacaaaga aatttttagg aaaaactcat
    61861 gtagaaggtg ttgaagcaaa tgatttaaaa cgcgagttta aagaaggcaa agctataaat
    61921 gtcgaaattt caaattctaa aaaaacttat aaagcggatt tagtgctttt agctatgggt
    61981 tttagcgggt gcgaagaagc tatctctaaa aattttggag tgaaattaga tgagaaaaac
    62041 aacataagca cagaaaattt ccaaaccact cataaaaaaa tctttgcttg tggagatgct
    62101 agaaaaggac aatctttagt tgtttgggct ataaaagatg gtatagaatg tgctttgagt
    62161 ttgcatcaaa atttagcaaa ataatcataa aagtttaaaa ctttttcggt ggagtttgca
    62221 aattccaaat ttagctataa attctttatg agcttttgtg ccataggctt tgtttttttc
    62281 aaattcataa caaggaaagt ctttagctaa gaaattcatc accctatctt tactaacttt
    62341 tgcaagtatg ctagctgcac ttacttgcaa aatgctagtg tcggctttga tttgtgtttt
    62401 tatcccgttt atacctaggt tggtgtttcc atcatataag aagttatttt ctgttttaaa
    62461 atgctttttt ataagtttta agcctttttt taaacaagtg cttaagccta gtgcgtcgat
    62521 ttgttctgaa gaaaaagcaa gtatgagata gtttgaattt ttgatgatga tttcataaag
    62581 ttcttcgcgt tttttttcgc ttagtttttt agaatcacac aacccatcaa gttgtttgtt
    62641 cagtttgcaa gctgccatca tcataggacc tgctaaagca ccgcgtcctg cttcatcaat
    62701 accgattaaa tttatatcaa attcgtttaa aagttctttt gtgtcaaata aagttttcaa
    62761 atttttctaa aaagaagggc aaaaatgccc ttttattcta ttgtgatatc atttttgatt
    62821 ttttcaaaaa gcttatcacc tatgccttta acttttttaa gatcatcaat acttgtaaaa
    62881 tttgcttctt tgcggtattc taaaatcgct ttagccttag cttcgccaat accatttaaa
    62941 ctttttaatt cttttagtgt tgcagtgttg atatttacag caccaaagag aaaagccgtt
    63001 aaagcaaaaa ataaaaatag taattttttc attttcttat ccttttatta aaaaataatt
    63061 ataatattat cttaaaaagg ataagaattt cttaacttaa cccaaaaatt cgcgtttaaa
    63121 atactctttt ggtgctttac ataaaggaca ggctgctgga gcttttttgc cacgatgtat
    63181 atgtccgcat acttcacaaa cccataattc ttctacttca ctattaaaaa attcttcttc
    63241 ttcgagcatt tttttaagcg ctagatattc tctttcgtgt tcgatttcta ctttaccaat
    63301 agctgtaaat aatcttgcta tagccttttt accttcatct tcagcaattt ttgcaaaatt
    63361 tggatacata gttgtgtgct catagttttc accttctgca gcacttacta ggttttttgt
    63421 agttacttct aaaggttttc catcaacgat ttcatgataa gctttaaatt ctgctcttgc
    63481 atgccatttt tcattttcag ctgcttctct aaaatgtcta gcaaccgcat gccaaccttc
    63541 ttcttcagct acatcagcaa ataaatcgta tttgtttctc gccatagatt cgcccgcaaa
    63601 agctttcatc aaatttactg cagttaaatc tgtagtgata catttcattt cttcaccgca
    63661 acaactaagc ttacctccac ctacattttg aacttctact tcattaccac atttttggca
    63721 tttataggtt tcatattgtc tcattttgac tccttttttg attatcaaaa agcattgtat
    63781 tataaaaaaa tatttttgtc aattaataat ttttatcatt tatgaaaatg tatatcaaaa
    63841 taaatttcac aaaaattaag ctttgctaaa tataatttta aaaaattatt atcaggagtt
    63901 acaatgagaa gcgatgcgat aaaaaaagga catttaaaag cacctaatcg ttctttactt
    63961 cgtgcttgtg gtttgaaaga tgaagatttt gacaaacctt ttataggtgt agcaaatagc
    64021 tatatagata taatcccagg acattatttt ttaaataatt atgctaaaat cattaaagat
    64081 gagatacgca aaaatggttg tgtgcctttt gagtttaata ccataggtgt agatgatggt
    64141 atagctatgg gacatgaagg tatgctttat tctttaccaa gtcgtgaaat catcgcaaat
    64201 tccattgaaa cagtgatgaa tgctcatcaa cttgatgctt taatctgtgt tccaaactgc
    64261 gataaaatca ctcctggtat gttaatggga gctttaagag taaatgttcc aaccattttt
    64321 gtaagtggtg ggcctatggc ttcaggggta actaaaaaag gagaaaagat tagtcttagc
    64381 tctgtttttg aagctgtagg ggcttatgaa gccaaaaaaa ttagcgaaga agaatttaaa
    64441 gatatagaat gttcagcctg tccaagtggt ggatcttgct cgggaatgtt tacagcaaat
    64501 tctatgaata ccttatgcga agctatgggt atagcactag aaggtaatgg aaccatctta
    64561 gctttaagca aagaaagaga agagctttta agaaaagcag cgcgtcgtat ttgtgaaatc
    64621 gccttagatg agcgttttaa aattcgcaat atcatcactc aaaaagccgt gcgtaatgct
    64681 atggtagtag atatggcaat gggtggaagt agcaatactg ttttacacat gcttgccatt
    64741 tcgcgtgaag caggggtggc actagatatt aaagatttaa atttcatctc aagcaaagtt
    64801 gcacacatag caaaaatagc cccgtcgcta aatagtgttt atatggatga tatccacaaa
    64861 gcaggcggtg tgagtgcagt tatggctgaa atttcaagca gacaaggaca tattttagaa
    64921 cttgatgcac tgaccattac aggagaaagt ctcaaagaac gcttaaaaaa tgccaaaatc
    64981 aaagatgaaa atatcattcg taaagtagat aatgcttact caaaagtagg tgggcttgcc
    65041 attttgtttg gaaatttagc cgagcaaggt tgcgttataa aaaccgcagg aataatcgga
    65101 gaaagaaaat ttaaaggcaa agctgtttgt tttaactctc aagatgaagc tataaaaggc
    65161 attatcaaag gcaaggtgca aaaaggaaat gtttgtgtaa tacgctatga aggtccaaaa
    65221 gggggtcctg gtatgcaaga aatgttaagt cctacttcac ttttaatggg tatgggttta
    65281 ggtgctgatg tagctttaat caccgatggt cgttttagcg gggctacaag gggtttaagc
    65341 gttggtcata tttcccctga agcagctgaa ggtggtctta taggactttt aaaagatgga
    65401 gatgaaatag aaattgatgt agatgcttat actatccatg caaatgtaag tgaagaagaa
    65461 attgctaaac gtaaaaaaga atttgcattg cctcaaaaag aggtgtcttc aagatggctt
    65521 agaatgtatc aaaaacttgt tagcaatgct agtaaaggtg cggttttaga tatggaatga
    65581 aaggtttcct ttcattcttc tatgtctttg gttatacgat ttcttatatc tctacgaact
    65641 atttccatgc cccacagcca aacaatatgg ccaaaaattt cagacaggtg ttcatcaaaa
    65701 ggaatttcag aaagtggtgg aacttctgca attaaaggca ttacaataac atgggcaaaa
    65761 agataaacaa aaaatccaaa aactgcacct ttcagtaggt aagcctagtt gttctagaaa
    65821 aattttaggt ggagtaacac gttctaaagc atctgctggt caaaaaacat tgggatttct
    65881 tggaggaaaa ggtacttccc aaccccattt aacaatagct ccgaaaatac ccgctaatat
    65941 acctataaaa aaggctaaag tatagcgctt ttgaaagtat tttttcataa taactccttt
    66001 atattttata caaaataaaa tttgaaatta taatattttt atttaaaaca tattgaaaat
    66061 agtagtataa aaatcttatt taaattttaa aatactctct taaactttca caaatttcaa
    66121 aaaaattcac cccatctatg gtaggatttt ctttaaaaaa ctcatacatt cctaaaaaac
    66181 cactttcaag ttctttagac tttacaccat aacttatact aagtcctgct tctatataag
    66241 cagcaatttt atcgcagtat ttaagcgcct taccatctat agcaccaaat tcattttcat
    66301 taaaagagct taaacttccg ctgcaaagct cgattttagc atttttataa gtgcgatttt
    66361 caaactcatt ttttacaaaa tttgactcac cgtttctacc ttctctaatg cctaaaatat
    66421 aagaaaactc agcccttaaa ccctcaggta caaagggtaa aattctttca ttaataagtt
    66481 tcatttcata atcatttatg atatcatgaa gtccatcaat gccgtatttt acagggctga
    66541 taatatcacg tgttaaagac tctggcaaat catgaaacaa agcacaataa aaattattct
    66601 caagtctttt atcgcaagcc ttgattttta gtgagtaaaa atatcctaaa atcgccacca
    66661 caagcatatg tcctaaaacc gcggtttctg gtatgcgtgg agtttgagcc caacgttttt
    66721 gaaagcgaag tcttccgcta agatcaataa ttttggctat tttttgattt aaagcaattt
    66781 ttctagctcc tataagctca tagtaatctt ctaattcttc ttcaactttg tttttaatct
    66841 catcaatatc atttaaaaaa gctgaggttt gataaactat gttaaattcc catcttgtag
    66901 caaaatatga agctgctttt aagataagtc tttctttagc ataagcatta ccgtttaaat
    66961 acgcttcaaa acgctttaga aattccccat cttctatatc ttctatcata ggttcgattt
    67021 tgcttaaaac ccaagcatta acttcagctt ttttttgacg cacgatttca tgatacacat
    67081 cagggcgtat atcagttacc acaacacgac ttaaaaactc aaaaattccc ccttctataa
    67141 tcactctcat atccacatct ttttccattt tagcgataaa atatgcgatg atgaatttat
    67201 gagcttgttt gtcaagttca accaaatttg ccattcttgg ataatcattc caacgactga
    67261 tagaagcggc tttaaaaatg tgttctatga gttttatgtt tatcatgctt ttgccttttt
    67321 ttgcaattta aatttaaaaa ttttcgttaa aattgtgaaa ttatagcaaa tttaaggata
    67381 aaaatgagta aaaaagcact ttgtatcata agtggcggta tggatagtac tttgtgtgct
    67441 tatctggcca aaaaagaagg ttatgaaatc atcgctttgc attttgacta tgaacaacgc
    67501 actcaagaaa aagaaaaaga atgttttaag caaatttgca aggctttaaa agtagaaaaa
    67561 tcttatattt tagatgtgag ttttatcaaa gatatagggg gtaatgcctt aaccgataaa
    67621 agtatagata tccctaaaaa tgagctttgc ataagcgatg tcccacctat cacttatgtg
    67681 ccttttcgca atggaatttt cttaagcata gcaggatctt tggctgaaaa ggaaaattgt
    67741 gagagtattt ttataggggt ggtagaagaa gatggcagtg gttatcctga ctgtactgat
    67801 gagtttatac aaaaggcaca agaatttatc aatgaaggta caagtaagaa tttcaaagtt
    67861 tgtataaaaa ctccgcttgt tagactaaac aaagctaaaa ttgtagaact agccttaaaa
    67921 gaaaatgtac ctttagaact tacttggtct tgttatgaga gtgaagatga agcttgtggg
    67981 gagtgcgata gttgtttgct tcgtttaaga ggttttgaaa aagcaggatt taaagataag
    68041 attaaatata agtcctagtt ttcactagga cttaaagctt agtttaaagt ataaagcttg
    68101 tttgctccat cttgataaga aagaatattg atttttccat ctttaaagaa aatgcttcta
    68161 gcattagtga tagagcttgg gaaagcgata gttttcacta cttcttcttt gactggatca
    68221 attacggcaa tcacattgtg atttttgcta agtgcataaa tttccccatc tttaaaagtc
    68281 atagaagtta cataaagatc gcctaaagtt ttaccttctt taagatttgc ttttggagta
    68341 aattctcctg aaagaacacg atcttttaaa gaaactttag agattacaaa agttttagcg
    68401 tctttgttgt ttggaacagt tgcaagataa agataatttc catctgtagt catacttgct
    68461 acatggttaa attttgctct tacggtatca agtcttccgc gacctaaact ttcgccttga
    68521 cctttaaatt tatcattgcc ttttacaaag tcagcgtatt gtttagcgat atcttcttca
    68581 cttgcattag gattttttgc aaatcttaag aaagatttgt ttgagcccat aagaatgaat
    68641 ttatcgttca tataaggtat gataccgatg attggatcaa tagtagctga aaaataagga
    68701 tcaagttcaa aaccttcttt aacgctaaaa ttattatcta agaaagctac atcccattta
    68761 gaacttgcta caaattcgtt attgatataa tcaagagtat tgatggcttt gtcaaaattt
    68821 atggtttgtt catttgtgat tttaagctca tcattgattt ttgcaaatgg agcattgttg
    68881 atatcattat caaattttat gccaagtttt tcacttgcag gtgcaaaagc ataatcagga
    68941 gctttaacat cgcgttttcc taagaaagaa atattttgcc ataaaccatt ccaaccttct
    69001 ttactccaaa tgatgtattt tggatttaaa ctaaatctta caggatcgcc ttgtcctaca
    69061 taaggaggaa tacctgtgct aacaaaggct tggaaaacat ttgatgctac gatgatagca
    69121 ctgattaaaa ctgctgcaaa gctaaattta gtatattttc taaacttttc tccatttagt
    69181 tcagcttcaa aagcattaaa tttaggagca aaagcaaaaa tcacacctaa gagcaataca
    69241 acagcccaaa atactacttc agcccaaaaa taagtatgga taccaaaaac tgctaaacca
    69301 aaaccttgat ctaaatctct atgagcgtga ttaccatagt gagcaaaaga ttgataaagc
    69361 cctactgctg tcatgattaa aagagcagca aggtatttac ctttcatacc ataacgaaca
    69421 atgaaaagcg ccattacacc gataaagatc attgcttctc tttgtcccca gcaaagcgtg
    69481 caaggactat cgcccaacat ataaccaaat atcaaatttg caatacctac aggcaagagt
    69541 ataatcaaaa agcctgctaa acacattagt gtgtagaaat tttttgtttt attgatttcg
    69601 ttcatttagc ccttccttac agattcatta ttgttaatag tgcgcctgtt ttgtggccaa
    69661 catagaaaaa aaccattaaa agccaagcta ccattaccaa accaaaagcc aaattttctt
    69721 tttctggttt tttgataatc agtatcaagg cgattaaaac taataaaagt tcaagaaact
    69781 ccatagtatc tcctttgaaa taaaaactgg taattttact tgaaaaacat aaattaaaaa
    69841 taaaattttt attgaaattt cacgttaagt taaattaacg tgaaaaaagt tactgaaagc
    69901 tacttaattt ttcggagagt ttagaggcac catttagaac attttgagag atattattga
    69961 tttcacatga taaatcttta acagaatttg caagttcgtt aactttatct atatttgttc
    70021 ctaagataag cattttatct tttacttcca tgcttttatc tttcatggtt tgggttgatt
    70081 ctatagagct ttccaattta tgcatagaat ttacaagttc ttgttgtaaa tcattggttt
    70141 ttgaagaggt ttctttcata gaatcatgga taagatccat taaggctttg ttgtcattga
    70201 tttgttggac tatagtatta acagtagcat tgatgtttaa aagagattta cttgttttat
    70261 cagcaagctg tccaacttca tcggctacaa cagcaaatcc acgcccatgt tcgcctgctc
    70321 ttgcagcttc gatagctgca tttagggcaa gtaaattagt ttgatcagct atgtctttaa
    70381 tggagtttgt gatttctata atattatccg cactttgggt tagattgtcc atattggcta
    70441 ctatattttg ttctttttca ttgttttcat ttattaaatt tacaagttca gatagagtaa
    70501 gttctacttt atccattagt atgtgcatat cttgcatatt ttctatactt tcttgtgcta
    70561 aatttcccgc aagattgata tgatcatcta aaacatgagt gatttcttta actccttgaa
    70621 tttgttcatg ttgcgaatta gagctgtttt caagcatcat agagttgttt ttgagttttt
    70681 gtgaattttg atgacttgat ttagcatttt ctatggcttc tatgattgag ttttgaacgg
    70741 tggaaataaa tgaattaata tattgagcac tttgtccaag ctcacttttt ggatctatat
    70801 ttaaacgaga gtgtagattg gcttctttgc tagctaaatt agcgcttagt ttttctaaag
    70861 tatgaattgg catgatgact ttttttagtg ttaataaaat aaaaaataca aataatacaa
    70921 gagtgattcc aaatactgct aaagcgatat aaaatttaaa taaattagat tgttctatag
    70981 tattttgggt aaaagtgtta agttgtttta act
//
LOCUS       DARGEM010000002        30777 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.002, whole genome shotgun sequence.
ACCESSION   DARGEM010000002 DARGEM010000000
VERSION     DARGEM010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30777
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.002"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..351
                     /locus_tag="SFZ78_000088"
     CDS             <1..351
                     /locus_tag="SFZ78_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HEG8211005.1"
                     /translation="KFFKKALKDENLQKELLLNFKGKGVYLPYPLVADTAFTKAGLKN
                     CNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAFDKAYKNAKINTKSY
                     FEAAKFAINLHSKA"
     gene            complement(341..943)
                     /locus_tag="SFZ78_000089"
     CDS             complement(341..943)
                     /locus_tag="SFZ78_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211006.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            1062..2261
                     /locus_tag="SFZ78_000090"
     CDS             1062..2261
                     /locus_tag="SFZ78_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211007.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            2317..2637
                     /gene="ciaC"
                     /locus_tag="SFZ78_000091"
     CDS             2317..2637
                     /gene="ciaC"
                     /locus_tag="SFZ78_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG8211008.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            2821..3843
                     /locus_tag="SFZ78_000092"
     CDS             2821..3843
                     /locus_tag="SFZ78_000092"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG8211009.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            3840..4742
                     /locus_tag="SFZ78_000093"
     CDS             3840..4742
                     /locus_tag="SFZ78_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG8211010.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(4739..5935)
                     /locus_tag="SFZ78_000094"
     CDS             complement(4739..5935)
                     /locus_tag="SFZ78_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211011.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(5937..7739)
                     /gene="uvrC"
                     /locus_tag="SFZ78_000095"
     CDS             complement(5937..7739)
                     /gene="uvrC"
                     /locus_tag="SFZ78_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG8211012.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(7732..8226)
                     /locus_tag="SFZ78_000096"
     CDS             complement(7732..8226)
                     /locus_tag="SFZ78_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211013.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYTVNKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            8365..9900
                     /gene="guaA"
                     /locus_tag="SFZ78_000097"
     CDS             8365..9900
                     /gene="guaA"
                     /locus_tag="SFZ78_000097"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG8211014.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            9987..11447
                     /locus_tag="SFZ78_000098"
     CDS             9987..11447
                     /locus_tag="SFZ78_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211015.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            11687..12937
                     /gene="purD"
                     /locus_tag="SFZ78_000099"
     CDS             11687..12937
                     /gene="purD"
                     /locus_tag="SFZ78_000099"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG8211016.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            12934..13386
                     /locus_tag="SFZ78_000100"
     CDS             12934..13386
                     /locus_tag="SFZ78_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8211017.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            13376..15424
                     /locus_tag="SFZ78_000101"
     CDS             13376..15424
                     /locus_tag="SFZ78_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG8211018.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEEQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            15494..17653
                     /locus_tag="SFZ78_000102"
     CDS             15494..17653
                     /locus_tag="SFZ78_000102"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG8211019.1"
                     /translation="MQYSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNSVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            17650..18132
                     /locus_tag="SFZ78_000103"
     CDS             17650..18132
                     /locus_tag="SFZ78_000103"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG8211020.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(18175..18837)
                     /locus_tag="SFZ78_000104"
     CDS             complement(18175..18837)
                     /locus_tag="SFZ78_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG8211021.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(18855..20039)
                     /locus_tag="SFZ78_000105"
     CDS             complement(18855..20039)
                     /locus_tag="SFZ78_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211022.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSASAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            20093..20548
                     /locus_tag="SFZ78_000106"
     CDS             20093..20548
                     /locus_tag="SFZ78_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG8211023.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLTQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            20800..22095
                     /gene="porA"
                     /locus_tag="SFZ78_000107"
     CDS             20800..22095
                     /gene="porA"
                     /locus_tag="SFZ78_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 2 major outer membrane porin protein PorA"
                     /protein_id="HEG8211024.1"
                     /translation="MKLVKLSLVAALAASAFSAANATPLEEAIKDIDVSGVLRYRYES
                     SNPWSNANFGSGISGKQDHKYRAQVNFSGAISDNFKAFVQFDYNSQDGGYGADSISNT
                     SDTLSVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNAIDGLVGTGIKVVNNSIDGLTL
                     AAFAMDSFNEASDTTVTITQDNSQKITGVQFNRGNPKGDSDVSGALDWSKNIYGAAAI
                     GSYDIAGGQFNPQLWLAYMSDNAFLYALDAAYSTTIFDGINWTIEGAYLGNSVDNKLK
                     DRLDAANGNFFALRGTVEVNGWDASLGGLYYGKKDKVTLTTIEDQGNLGSLLAGEEIF
                     YTNGSNLNGDIGRNIFGYVTAGYTFNETVRVGADFVYGGTKTNIIGQGGKKLEAVARV
                     DYKYSPKLNFSAFYSYVNVDTDPESTHHDAVRLQALYKF"
     gene            complement(22211..23332)
                     /gene="dnaJ"
                     /locus_tag="SFZ78_000108"
     CDS             complement(22211..23332)
                     /gene="dnaJ"
                     /locus_tag="SFZ78_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG8211025.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRIGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKIANWFKS"
     gene            23489..24160
                     /locus_tag="SFZ78_000109"
     CDS             23489..24160
                     /locus_tag="SFZ78_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8211026.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            24157..25392
                     /locus_tag="SFZ78_000110"
     CDS             24157..25392
                     /locus_tag="SFZ78_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8211027.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAVLEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            25392..25964
                     /gene="recR"
                     /locus_tag="SFZ78_000111"
     CDS             25392..25964
                     /gene="recR"
                     /locus_tag="SFZ78_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG8211028.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDAIIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(25961..26497)
                     /locus_tag="SFZ78_000112"
     CDS             complement(25961..26497)
                     /locus_tag="SFZ78_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG8211029.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(26494..27186)
                     /gene="cybH"
                     /locus_tag="SFZ78_000113"
     CDS             complement(26494..27186)
                     /gene="cybH"
                     /locus_tag="SFZ78_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG8211030.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(27197..28912)
                     /locus_tag="SFZ78_000114"
     CDS             complement(27197..28912)
                     /locus_tag="SFZ78_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG8211031.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALNADVKKASDEAFKYTPNPYATGSDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(28915..30054)
                     /locus_tag="SFZ78_000115"
     CDS             complement(28915..30054)
                     /locus_tag="SFZ78_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8211032.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(30174..>30777)
                     /gene="mnmC"
                     /locus_tag="SFZ78_000116"
     CDS             complement(30174..>30777)
                     /gene="mnmC"
                     /locus_tag="SFZ78_000116"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8211033.1"
                     /translation="AVLIYAMGADTKDFVFYDEMKLSKVRGQVTHLKPFLDTPFPLSS
                     KAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEIIGSKVGF
                     RSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHGSRGFSTS
                     VLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
BASE COUNT        10882 a         5187 c         4653 g        10055 t
ORIGIN      
        1 aaatttttca aaaaagcctt aaaagatgaa aatttacaaa aagaattgct tttaaatttt
       61 aaaggcaagg gcgtttatct accctatcct ttagtagctg atacagcttt tactaaggct
      121 ggtttaaaaa actgcaatcg cttagtggct atgtatcacg atcttgccct tgctccttta
      181 aaggccttgt attttgataa aagcatcaat gtaagtttaa atttacctat catacgcgtt
      241 agtgttgatc atggcacagc ctttgataag gcctataaaa atgctaaaat caacactaaa
      301 agttattttg aagcggctaa atttgcaatc aatttacatt ctaaagctta aatttagccc
      361 tagaatcaat caaatcttct ttagctaagc tgtctataaa atcttgcaaa tctttattgg
      421 tatttaaact ttgagtgagt aaattttcat atttatcaac tttattttta aaaatttgct
      481 ctaaaacttc tttagtcttt gtatcttttt ttgctctttg cataagttct aataaaacct
      541 taatataagc ttcttgcatg caatcacttg cattgagtaa agataaaata ggattttccc
      601 ctgcttttgt attttgcata ttttttatac aaatttttct ttctttaagc atcttttttg
      661 aaatggcttt aaaatctttt ttcatctttt tatctgcttt ttttgaaata ttttgatata
      721 aactactata gatgttatct actaaagcaa gttttttatt atcaaattca ttacgcacac
      781 caattttatt gcatatcata agttcatcat cacttttgcc atcatatttg attttagagc
      841 aatcaaaact aggttttact tcatctttat aaataagctc atcaaaactc aaagccccta
      901 aactcgccaa acttaaacca agcaataaaa taattttttt cattatttac ctttaaaatt
      961 tttattttat tttattttaa caaaaaatat tttgaatttt ttaaggaaat taagccttta
     1021 ttttattata atgcgttttt attttttata aggaacttaa aatgcaaaat tacaaaaaag
     1081 ctctttttgc actagctctt agtgcttttt gtatgggcgt aactgaattt gttatggcag
     1141 gagttttggt tgatgttgaa gcgtatttta gcgtagatgc aaaaaccgcg ggctatctta
     1201 caaccttata tgctataggt gttgttatag gtgctcctct tatcaccata cctttaagtc
     1261 gttttcatag acatacacaa cttttaatca atcttggaat ttttgcttta gcaaatttca
     1321 tcatcttttt tagccaaaat ttctatctta ctgcttttgc acgctttata gcaggaacac
     1381 aacatggggt attttttgtc attgccacct tagctgtaag tgctataact ccagatgata
     1441 aaaaatcaag tgctctagct ataatggtca cagggcttac tgtagcctta gttactggag
     1501 tgccgcttgg aacttttata gggcattatt ttggctttaa atttatcttt ttactcattt
     1561 ttatcattac aagcctagca ttttttggag tatggcatat gatgcccaaa aatttacatc
     1621 ctagcccaac cagtcttaaa aatctaatcc ctgctttttc tcatcaaaat ttgttaaaaa
     1681 cttatactat aaccatttgt agttgtgggg ctcaatttgt tctttatact tatttgcaaa
     1741 aaatacttgt agaaataagc ggttttaaag tccaagatac agcttatatc ttgcttttat
     1801 atggaatttg tgcaatttgt gggaatttat ggggcggaaa aatagtagat aaaaaaggtg
     1861 ctattttttc tttgcgtctt attttaagca tacaagttct agtattttta agtgtatttc
     1921 tcaccatgca ttctaaaatt ttaatcattt ttagcgtagc tttgatagga ttttttgcct
     1981 tttcaaccat acctgcacta aaaatgctta gcattactaa agctaaacgc catacttata
     2041 aagtcataga cagtacagta agtgtgaatg aagcagcttt taatgtaggc atagctttag
     2101 caagtttttt aggtgggatt gttttagcaa gattgggtat agaatttaat gctttatttt
     2161 cagcactttt tgtaagccct gctttgattt ttgccttgct ttttgccaaa gataaattaa
     2221 attataaaaa atttcaaaga aaaagtttta caaaggtata aattggaata gaaattgctt
     2281 gcttatttaa tgtaaagtta aataaaggag gagaaaatgg tagtagataa tactcaaaaa
     2341 acatcaaatg ctatctttag caccacaact aaagttaaag aaaaaaatac ttcggcagat
     2401 gaatttcaag ccacattaaa tgaagtaaaa aacaaagaag aaaaggaaga taaaaaaaca
     2461 aactcaagca aatttactaa cgaagacatt gatcttggtg ctgttagaga agattttaga
     2521 tcttatgctt ggcaaaaaat gagagaagat caatacaaaa aaaatgagga gactttgcta
     2581 aataagcttt ttactacaat tgacgcagga aatgccacaa acaatacaaa ggcttaatat
     2641 acaaatcaat caaaactcaa actacataaa cgagaattcc aataattctc gtaaaatttc
     2701 taataactct ggataaaatg aaaaaattta ttatttcctc tatatgaaga aaatatagaa
     2761 aaattgacca atttaattta tcaaattctg ttataatttt gctaaaaaca aaggaaaata
     2821 atgattttta tcgatgcttg ctttaaaaaa cctacaccct acacccctat ttggatgatg
     2881 cgtcaagcag gaaggtattt gccagaatat atggaagtaa gaaaacaagc gggtgatttt
     2941 ctctctttat gcaaagacta taaaaaagct tctgaagttt ctttacagcc tattgatatt
     3001 ttagatgtag atgcagcaat cattttttca gatatcttag ttgttcctct tgaaatgggt
     3061 atgaatttac gttttgaaaa aggagaaggg cctgtttttg ataatcctat ttcaacccta
     3121 gaagatttag aaaaacttga cgatcaaaat gcacataaaa aattaaatta tgtctatgat
     3181 gccttaaagc ttacaagaga aaaattatct caaaacaagg ctttaatagg attttgcgga
     3241 agcccttgga ctatagctac ctatatgata gaaggaagtg gaagtaaaaa ttatgcaaag
     3301 tgtaaaaaaa tgctttatca aaacccagaa cttttacata aaattctaaa caaactaact
     3361 caagttttaa aactttattt agaagagcaa attaaagcag gtgctaatgc tatacaaatt
     3421 tttgatagct gggcaagtgc tttagaatat gataagtttt ttgaattctc ttttaattat
     3481 atgcttgaaa tttcaaattt tattaaaagc aaatacccaa atatacctgt aattttattc
     3541 cctaaaggca ttagcggtta tttggataga atcgatggta attttgatgt ttttggagtt
     3601 gattggagca ctccgcttga tttagcacgt gataaactat cgcacaaata cactcttcaa
     3661 ggcaacatgg aaccttgtag actttatgat aaaaatgcca tcaaagaagg agtcggaaaa
     3721 atactaaaaa ccatgcaaaa taaagctcat attttcaact taggacatgg gatcttgcct
     3781 gatattcctg ttgaaaatgc aaaatatttt atcaagcttg tacaagaaag ttcagctaaa
     3841 tgaaaatact ctttggtcct gttagctcaa ggcgttttgg aagatctttg ggtatagatt
     3901 taagccctag taaaaaacaa tgcaattttg attgtgttta ttgcgagctt gatccaaaaa
     3961 aagcccaaga aaaacaggat gaaattatca gcatagataa aattatctcc gaagttaaag
     4021 ttatgcttga aaaaaatgtt gaatttgatt ttcttaccct tactgccaac ggagagccta
     4081 gtctttatcc ttatttaaat gagcttattt tatctttacg cagcattgct aaagataaaa
     4141 aattgcttat tttaagcaat ggtacagctg tattagatga agacaaattt aatgctttgc
     4201 taaaactaga tgtggtcaaa tttagcctgg atagtgcagt tgctaaaact ttttatcgta
     4261 ttgatagagc tttaaaaaac attgacttag aaaaaatgat agaaaaaatg gcagatttta
     4321 gagctaggtt taatggagat ttgattatgg aaattctagt tgttaaagat cttaatgaca
     4381 acgaagaaga atttgaagca cttaatcaag ctttaaaaaa aatcatgcct ttaagagttg
     4441 atctaagcac catagataga cctcctgctt atgctgttaa aaaagtaagc gaagaaaaac
     4501 ttttagaact ttctaaactt atagattcta ctcccgtact cttagccaaa agacattatg
     4561 aaggtgaaaa actaagcttc aatgaagaag aattattaaa aatgcttcat ttgcgctcac
     4621 aaagcgaaat agacattgaa gtgaaatttg atgaacaatc caaaactctc ttaaatcaac
     4681 ttatcaaaga aaaaaaggta aaaattctcg atttagctgg agttaaattt tataaagttt
     4741 aggcctttgg caaatacttt ctaagtaaag ttataagatc atttctactt acatcactta
     4801 aaacttcgct cacacaatca aaatccctaa ctttttcctt tgaaaaaaag atgatatggc
     4861 tttgtggatg ctgtttttta taagcactta gcaaatttct catttgctca agatcaaatt
     4921 taattaattc ataatcaagt aaaatcaaac gataagtctc cttgcttaat tcttgtttta
     4981 attgactaaa agaatttata catatatttt tatcacattg tttttctatt atattaaaaa
     5041 acaaggttgc atcaaaatca ttttgtttaa aaagcaatac attattttga taaggggttt
     5101 taaattttaa agtgcaaacc ttatcaagct tgttttgcaa aatattttca agatcttttt
     5161 tttcaaaagg taaagttaaa aaatactcat aatgtgtatt tttatgccga cccatcacta
     5221 taaaatcata atttttcttt acatttttat tgaaaatttt atccttgata aaaatcaaat
     5281 gaaagtcatt aacatcaaaa cttaaatttt taaaacaagt gctttctatg ccaaaatacg
     5341 aaagtaaatt tgcaagtaaa aaattctcaa gctcatcatt attaactatg gccacacttg
     5401 cttcaaattg caaaaccttt ccatgagatg ttcctataat gcttttatga tgctctaaag
     5461 cctcatttaa ttctaatcta atttgatctt tttgagaatt taaggcattt aaaatcaaag
     5521 aattaatttc tttattatac ccttcattta agcaacgcat tgcattagat atatttacaa
     5581 gctgatataa attttcctcc aataaatgca aatatctatc tttttcatgg gatattttag
     5641 ttaaattttg gctcgtagtt tcaaattttt cctttaacaa atcaagcgca ctatcaacat
     5701 caatcttttt ttgaaaattt aaaaaatcat tttgcatgca aaaaattttt tgatatattt
     5761 tgtttatatt tctattttgc ctaaaagcaa aaataaaaag tgttaaagat aaaacaaaaa
     5821 tgctagaaaa catacctatt ttcagttgtt cagtaacact atcaagcttt gagatatcaa
     5881 tacttaaata cgctaaaatt agattaaaaa taaaaattat ccctgctaat atcaaatcaa
     5941 ttttccttta tcttttgcgc cgctttcctg cctacaagca ttgtaagatc tttaaaatca
     6001 gccttatata tagattcaaa atttccataa tacgctaaaa gtttttgtat aacccctgaa
     6061 ctaagtccta aatttacaag cttagaacta ttcaagtcct gttttttctt agtattttga
     6121 tgaaagctga tagcaaaacg gtgtgcttca tctcttaatt tctgtaagaa ttgtagtttt
     6181 ttatcgttaa tgcttagact aaattctcct tttaaggaat gaattttatc cttagcaccc
     6241 cctttagctc tatgtgcttt tgcatcgatt ttttcttttg aaatagctaa aatatcgaca
     6301 tttgccccac tacttacaat gatttcttta gccaaatcaa gcaaagcctt tcccccatct
     6361 ataagccata aatcaggagg aggtatttta tcaaagtcca aagctctacg cgttaaaact
     6421 tcacgcattt gatcatagtc atttttatgt tttaaatgaa attttctata ttttgactta
     6481 tcccaagaat ttattctata agttaccata gctccaacat ttgccacgcc ttgcaaatga
     6541 gaattgtcaa aaatttctat atcatttggt aaattttcaa gctcaaaata aaactttaat
     6601 tctttttgta tagtaaaatc atgatttttt tgctcttttt ctatatttaa aagggcattt
     6661 tgaaaagcca aatcacaaat tcttcttttt tctcctattt tagggatttt aatactgatt
     6721 tttttatcaa acctttggct taaaatttct tctaaaagca ctctatcttc aaattcttca
     6781 taaacataaa taacatttgc aagcaaagga atatccatgc taaaattttc taaaatcagt
     6841 tgcttataaa tttcattttg atcccattgt atatcatttc ttataggagt aatcttagaa
     6901 tttgcactga taatttttcc attttgcacc acaaaacgca aggttgaaag cacggaattt
     6961 ttaaaagcta aagcaaatac ttcaaaatct tctaatttcg caatatctat ttcaacctta
     7021 acttccaaat ctttaatcat tgcaatctga tctcttactt tagctgcttc ttcgtaattt
     7081 tcattttgtg ctaaaacaag catttgtttt tctaagtttt taagcaaaac actaggattt
     7141 aaaagtgcgt gtatagcctc atctaaaatt tcaaggtatt tttccctgct gatgagttta
     7201 tcacaaggtg caagacaacg agaaatttga taaaaaatac aaggggattt acaacttgct
     7261 ttttgcttta aaggatagta taaataaagc gcatctaaaa gctctctagc gcctttaaaa
     7321 aaagggccaa aatatttaat tttgcttttt tttactaatt ttctagtgat ctcaaagcgt
     7381 ggaaattctt cttcaaaatc cacataaata taaggataag ttttatcatc tcttagcaaa
     7441 atattatatt ttggatgcag ttgtttgata aaagaatttt ctaaaatcaa agcatcagcc
     7501 tctgaattag tagcaataaa ttccaaatgc actgtttctt caatcatttt ttgaattctt
     7561 aaagaatttc ttggatttgc atgtaaattt ggagtaaagg caaaataaga tttgacacga
     7621 tttttaagat ttttagcctt gcctacatat aaaagctttc cttcttgatt aaaatattgg
     7681 tacactccag cactattggg aagagttttt aactcatttt ctaaattctc tttaatcaag
     7741 attagaacct ttttttataa gctctcttaa atcttcaaat ttcttaaata attttttatc
     7801 ttcaaagcaa tttttaaatt cacccttaga aagctccaaa taagaatttt tagagagttt
     7861 ttcatcattt ttgtttttat ttaccgtata agtgtatttt tgagaaaaga tttttatatc
     7921 ttttatatca acaaatccgc ttaaaggata tttttgtcca tatgctttta tgagaaattt
     7981 aatataaatt ttgctatcat catgatttaa ttcttgataa gctgctggat gtaaggttat
     8041 tatatttaaa atatgatttt ttacataaat tttagcaatc aaacgttgct tagcaagcgg
     8101 aaaagaactt aaaaaatctt tgcaaaaaaa taaggttttt aaaggcttat aatgaggttt
     8161 atccatcaat tcattaataa cagcactagc gtttttagtc atcttaatat tatttctttt
     8221 tcccataaga tgattttagc atttcttttc ttaattttct tctgtgcttg cggatataaa
     8281 ggcaaccctc aatacacaag ctatgaacaa aatggttcgg taaaaaccat taaaaaatac
     8341 gaacaattac ataggtggta aataatgaaa aaagcagata ttttagtttt agactttggc
     8401 tctcaataca ctcagcttat agcaagacgc ttaagggaac aaggagttta tgcagaaatt
     8461 ttacctttta atgtaagctt ggctgatatt aaggcgaaag aaccaaaagg tattatttta
     8521 agcggaggtc cagcaagcgt atatgcaact gatgcgtatt tttgcgataa aggcatattt
     8581 gacttaaatc tacctattct tggaatttgt tatggtatgc aactcatggc acatcattac
     8641 aaagctacag tagcacctgc aggacataaa gaatacggca aagcaaacat agaagttaaa
     8701 aaagatagcg ctttatttaa aaatcttcca aaaaaacaaa ccgtttggat gagtcattct
     8761 gataaagtag aaaatttacc tcaaggtttt gaagttttag ccacaagtga aaatagccct
     8821 ttttgtgttt ttggaaatga ggataaaaaa ttctttgctc tacaatttca cccagaagta
     8881 caacacagcg aatttggcaa aaatatctta aaaaattttg ctaaatacgc ttgcaattgt
     8941 gaaagtgttt ggaatatggg ttcttttgca aaaactcaag cagaaaaaat ccgcgaagaa
     9001 gtaggcaatg ataaagtgct ttgtgctgta agtggcggag tagatagtag cgtagttgct
     9061 gcacttttag ctagcgctat aaaagagcaa gttatagtag tttttgtaga taatggactt
     9121 ttaagaagtg aagaaaaaga acaagttgaa tttatgttta aaaacacttt aggcatcgat
     9181 ctcatcagca ttgatgcaag tgaaattttc ttaagtcgct tagctaatgt cacagatcct
     9241 gaacaaaaaa gaaaaatcat aggaaatacc tttatagaag tttttgaaga agaagcaaaa
     9301 aaacataaag atgtaaaata tcttgcccaa ggcacacttt atactgatat catagaaagt
     9361 tctgttgtag gtgcaagcaa aaccattaaa agccatcata atgtaggggg cttacctgaa
     9421 aaaatgaatc ttaaactcat agagccttta aaagaaattt ttaaagatga agtgcgtgcc
     9481 ttaggacttg agcttggact tagcaaagaa gtagtttatc gtcatccttt ccctgggcca
     9541 ggtcttgcta tacgcattat gggagaagta aatcgcgcta gcttagaact attacgcaag
     9601 gctgatgtaa ttttacttga ggaacttaaa agtacaggtt ggtatgataa aacttggcaa
     9661 gcattttgcg tacttttaaa tgttaaaagc gttggagtta tgggggataa ccgcacttat
     9721 gataatgcag tttgtatacg cgttgtagat gcaagtgatg gtatgacagc taccttctcg
     9781 catttacctt acgaaatttt agaaaacata agtcgccgta tcatcaatga agtagaaggt
     9841 ataaatcgcg ttgtttatga tatctcaagc aaaccacctg caactataga atgggaataa
     9901 tccatttttt tctagctctt atttttaata taaaattttt ataaaaataa ggctagaatt
     9961 tatttaagaa atttcaagga agaaatatgc atggaaaaat agctatttat atggattcta
    10021 caggacgtgg aaccgttaca aactcagcaa ataccttttt tgactttaat cgccaaattt
    10081 ggaatgataa aaaaagtatg ccaagtgttg gtatgcttgt ggaatttaga actctttcta
    10141 gcgaaaaaaa agcagaagac ggcaaactcg ttcaaacaag caaaaccata acaggtataa
    10201 aaccttcaaa atttcaagaa ttcaaagaag gggattttat cactgagcat gatttttgga
    10261 aaactgataa tgatgatgaa ttagaagact tgcaaaactc aagaagaagt gcttatataa
    10321 cagaactcta tagaacaaca gactttgaca ctatagaaaa aattcctctt tcttttacta
    10381 tacctcaagc tatacaaaaa tattttgccc atgaaatttt atccgtagaa acgcttcaag
    10441 ccaatctaca agatgaaaag gaaattcctt gtatacttga ttatcttata cttaaaagat
    10501 ttttatttaa agcttatgat actttaattt ttatggataa tagcatagac caaacccaat
    10561 ttagcgcatt aaaaagcatc atgatgcatt tagagaattc atacaagcaa atgatggctg
    10621 atcaaaaacc aaatatcact aaaattttta acgaaacttt tttatctttg cagtgtcatt
    10681 accaagcttt agtagccacc atagatacaa gaaacaatcg tctagcctca cttgaagcac
    10741 aaatgaaaac tttacaatct gaaataaatc ttaaaagcaa tgcgaccgat gcagaccctg
    10801 aaaaacttaa agcacgacaa gaaagattgg ctaaactaca aaaagaagca gaatactaca
    10861 gaacaacact aaaaagactt gatgctataa gggaagattt ttataagaaa aattacaata
    10921 ttttcgaaaa tgcttttaaa ctttcacgag aaaagctctt taaaaaaatt gtcacaggtt
    10981 taaatctatg cgcaaccata atggatgtta aaatttggca cttgtcttta aaatcatcag
    11041 gggttaaaaa ttcttatttt actatgagta atatagaaaa ttctttctgt tctctttctt
    11101 ttgcagaaca ttacttaagt cgcttaaata aatccgctct aaatcctttt gatcaaaaac
    11161 ttttagtgta tattcaaaaa atcacaaaag aacaaagaaa aaaattttta gttgtcacat
    11221 cggatttaga tttattatgc aaattaaaaa ttgaaaactt ttcacaaaat ccgtattatt
    11281 tagtaaaata cgcacctaaa aaagtgaatt atcagtcttt aatgcgtgat aacacctttg
    11341 atatagtcta tattgatgaa aaacatgttt gggaaaatgt tgccgatatt attttacaag
    11401 gaaagcattt tgacaaatca ggaaaaacca aatttaaact gatttaagac atagaaattt
    11461 aagctaaatt aagttataat ttccttgcct aaacagtttg tggtatttaa agtgatccaa
    11521 cacattttta ttaactgcga ttgtgtgatt taccgtgttc tgtggcatcg tttgagcttt
    11581 gaaaaaagtg agaagttgca gcctttaaaa attacctagc ggttttcttt gactttttgg
    11641 ggtcaatctt tgttaaacgg ctgtttgggt ttaaaaggag atataaatga aaataatgat
    11701 tttgggtagt ggtgcaagag aatattctat tgctttagcc ttaagaagag tagacaaaaa
    11761 tttagagttt tattttgctc ctggaaatgg cgctaccgaa agtcttggaa caaatttaaa
    11821 cctaaaagat ccagtagttt tagcaaccta tgcaaaagaa aaaggttttg atctttgtat
    11881 agtaggaagt gaaagttttt tagctgaagg ggttgtagat atttttaaac aacaaggact
    11941 tgctattttt gggccaagta aagctgctgc aatgcttgaa acctcaaaat cttttatgaa
    12001 aagctttctt aaaaaatacc gtatcaaaac agccaaattt ttaaacacaa atgacattga
    12061 aaaagcaaaa aattttatat atagtttaac ccctcctata gtagtaaaag ccgatggact
    12121 ttgcgcagga aaaggtgtta tcatagctaa aactcatgaa gaagccatag aagaaacagc
    12181 taaaatgctg agcggagaaa gctttggaga tgctggaaaa ctcgttgtaa ttgaagaatt
    12241 tttagatggt tatgaattaa gcatttttgc agtatgtgat ggcaatgatt ttgttttact
    12301 tcctgcagca caagatcaca aaaaattact cgataatgat caagggccaa atactggtgg
    12361 aatgggtgct tacgctccta gctctttggc gaatgaaagc ttgcttagaa aagttcaaaa
    12421 agatattatt ttaccaactt tagcaggtat gaaaaaagaa ggagcggaat tttgtggtgt
    12481 tttatttata ggtgctatga tcgttggaaa taaaccttac gtattagaat ttaacgttcg
    12541 ctttggcgat cctgaatgtg aagttttaat gcctttaatc gaagatcctt tagagcttat
    12601 tttagctgct actcaaagac gcttaagaca ctcaaaaatc aaaatcaaaa aagaatttgc
    12661 agtaggggtt gtatgcgcaa gtgaaaatta tccttacaaa agttcaccaa aaagtgaaat
    12721 taccgtaaat aacattcctg aaaactctca tatttcttat gctggagtaa gcctagaaga
    12781 tggcaaatta atggctgatg gtggaagagt tttagtttgc gttggcacag gaaaaagtat
    12841 agaagaagcg caaaaaaatg cttataaact ttgtgataat gtaaatttca aaggaaaaca
    12901 atacagaaaa gacatcgctc atcaggttct gaaatgaaag aaaatttaca agaccgctta
    12961 gagcgtgaaa atctaaaaat agcaagtttt ggaaaaagag ttctagcttt tttaatcgat
    13021 gatatggtta tttctttgat tgtgtttatc attttttatg atcgtctaat ccaagcaaaa
    13081 gatttatttg aaacaactca aattgtagga aatttttacc ttggcttcat cttgcttcat
    13141 tttagttatc aagcaatttt tacttatctt tatggagcaa gtttgggaaa aatattatgc
    13201 aaaattatca tcttggatga aaatcttctt gacaaaccca atctcattca aagttgcatc
    13261 aggtctgccg taagacaagt tagtgctatg gcgtttatgc ttggatttgc ttgggcttta
    13321 agcaatgatt tacgcaaagc ttgggaggat tatctagcaa ggacaatagt agtcgatgtg
    13381 gcgtaaattt tccctattgc taggaactag catagcttta aatgcagcac aagttgatat
    13441 ttacgctctt gatgcaaaaa aagaaggtga tattcttacc gcgaacaatg atgttattat
    13501 tttttctgat ttttatttca tcactgccaa taaagcaatt tacaatgaaa aaaccggaga
    13561 tgttgagctt tttggcgatg ttaacatcct aaggggacaa aacgaaagat cacattctga
    13621 ttatgctaaa atcaacctaa attccaatca agccgatttt agtaattttt tcttttccaa
    13681 taacaatctt gaagtatggt ttcaaagcaa aacaagccat ctaaatgata aagtctttga
    13741 aagcaaagtt tcagcagttt caagctgcaa tgttgaagat cctgattggg aaattcgttt
    13801 ttcaaaaggc tggcttaacc gggaaaccaa ttttgttcat ctttacaatg caagattata
    13861 tgttaaaaat accccagttt tttatctacc ttattttgga tttagcgctg atactcatag
    13921 acaaagcggg cttttaatcc caaaaatcgt tttaaaaagt agcgaaggct tatactatga
    13981 acaacctatt tatatagcca ctcaagaaaa ttgggattta gaacttgatc cacaaattcg
    14041 aacaaaccgt ggttttggac tttattctac tttaagattt cttgattctc catattcaac
    14101 aggagaatta aattttggtg cttttaggga aaatagctcc tattttcacg atgaaaattt
    14161 gaaaaatcaa acccactatg gaatagaact aaaatactca agagatgatt taatcaaatc
    14221 tttactcagt gataattttc aagaaggcct atggatagat gcaacctatc tcaacgatgt
    14281 ggattattta aatttaggaa gtagggatta tcgagatctt aactcgcttg taacctccaa
    14341 aatcaattat tttttagctg atgaaaacaa tttttatgga gcttatgcaa gatattatat
    14401 cgacacatct aaacttagca acaatacaac cttgcaagaa tatccaagct ttcaatatca
    14461 tagattttta aataaccttt ttgatgaacg cctgcgttat tcatttgatg cttcatttca
    14521 taatttttac cgacctgctg gttcttatgc aaatgagcta aatttagact tgcctatctc
    14581 gtatcacaac gctttttttg gagacttttt acactttact tttacagaaa gattttatgc
    14641 ttcttttgta aattatagca acgatcccga aagaaaccat gagcattatt tcagaaacac
    14701 tcatgatttt aatctctaca ccgatctttc aaaagcttat gaaaatttct ttcatacttt
    14761 aaatttaggg gtgaattaca ttttaccagg agcaaaatca ggtaaaatca cgcaagatta
    14821 tcttgaagaa tacgacaaag aaaacgaaca tacaagtctt tatgctgtgc aatatttcta
    14881 taacaacgaa gaacaaaaaa aactcaaaca cagaatttca cttgactatc tcaataaaca
    14941 aaatgaattc tatgaacttg aaaatctttt aacttattat tttaatgaaa atatcaatct
    15001 caacagcgaa gtgctttact cttatgaaca aagtcgcttt accaatgtca tcagccaaat
    15061 agaagtcaat acaaattcaa aatttaattg gatgttttct catgcttatc aaaacgatga
    15121 gtatggaaaa tatagcttta ttggtacaag agcaaattat attgccacac ctaattacaa
    15181 tttatttggt ggaatttggt ttgatactca aagagctcat gcaaacatgt gggaacttgg
    15241 ctatacctac caaagaaaat gttggaacta ttctttaatg tatagagaaa gaatcgatcc
    15301 acaactcaca agtggtggta tcacagctaa aaatcaaagc ggagtttatt ttattttcaa
    15361 cttctatcct ttaggaggag taaaatacga tttctcttta gcagaaagtg aaaacaaaat
    15421 ttaaaaagga tgaaatttgc taaatatttt aaaaaatttt acgaatttat tatctggtaa
    15481 aaaaggaaaa ataatgcaat acagcataga aattaacaaa aatacagaaa tatttaatat
    15541 agacaaagtc gccaaacaag ctgccggtgc tgttttaatg agacaaggca aaagcgttgt
    15601 tctagctaca gttgcaagag aagaaaaaca agttgaagaa gattttttac ctctaaccgt
    15661 ccaatacatc gaaaaagctt atgccgcagg aaaaatccct ggtggttatg tcaaaagaga
    15721 aaccaagcca agcgatgcag aaaccttaac agcacgcatt attgatagaa gcttacgccc
    15781 tctttttcca aaaggctatg cttatccgac tcaaatcgtt gtgatggttc tctcagctga
    15841 tcctaaagta gatttgcaag taatgagctt aaatgccgca agcgtggcac tttatcttag
    15901 tgatatacct atgaaagctc cagtatgtgg tgtgcgtata ggaaagatag atggaaattt
    15961 catactcaat ccaaacaatg aagagcttca aaatagcacc ctagatctct atgtagcagg
    16021 tgtaaaagat gagcttttga tgatagaaat gagagcctta cctgatcaaa aagaaaatga
    16081 aatctttatc gaagctcctt atgctgatgt tttaactcaa accacttcac aaaatatgaa
    16141 tgaacttagc gaagatgaaa ttttagaagc tctaaattta gctcaaaaag ctatattaaa
    16201 tggttcaaat gcttatgaag aagcctttag caaacacaaa aaaaattctc aaatcgaact
    16261 aaaaaatgag attgaacatc ctgaaatttt agcttttata gaaaataatt tccaaaaaca
    16321 aatcaaagaa gccatcaatc aaatggcaaa aagcgaaaga gcaagcgaac taaataaaat
    16381 cgctaaagaa attttaaatc ttgaaatcac taaagactgg agcgaagaaa gtgtcttaaa
    16441 taccttagct aaagtcaaac gcaaacttat tcgtgagcaa attttaaatg aaggcaaaag
    16501 agctgatggt agaagtttaa acgaggttcg tcctattagt atagaaacca atatcttgcc
    16561 aaacgctcat ggttcttgtc ttttcactcg tggacaaact caagccctag tggttgcaac
    16621 cttaggcgga gaaaacgatg ctcaaatgat agacttgctt acagaaaaaa atcctataag
    16681 cgaacgcttt atggtaaatt ataattttcc aggtttttca gtaggcgaag caagtcctat
    16741 caaagctcca ggaagaagag aactaggaca tggaaattta gccaaaagag cactttatcc
    16801 aagtgtggat gaaaactatc cttatgtaat ccgcttagtc agtgaaattt tagaaagcaa
    16861 tggctcaagt tctatggcaa cggtttgtgg cggatcttta gccttaaaag cagcaggagt
    16921 gccaagctta aaacttgttg caggagtagc catggggctt atctttgaag ataacaagta
    16981 tgctgtttta acagatatca tgggacttga agatcatgat ggggatatgg actttaaagt
    17041 agcaggaagc aaagacggcg ttactgctct tcaaatggat ataaaactag gtggaatcga
    17101 tcaagaaaca ctaaaacaag ctttatacca agccaaagaa ggaagaattc acattctaaa
    17161 tatcatggaa gaagccgcca aagaaatcat agtcaatgaa gaagttttac ctaaacttga
    17221 gctttttagc gttgatcctt caaaaatcgt tgatattata ggacaagccg gaaaaaccat
    17281 caaagaaatc gtagaaaaat ttggcgtttc tatagactta gatcgcgaaa aaggtgaagt
    17341 aaaaatagca ggtagtcaaa atgagcaaat caaagccgca aaagactaca tcataaacat
    17401 cacaagctct caaaaaggaa ctaaaaaagg ctctaaagac aaagatatat caggctttga
    17461 acttgggcaa gaatttcaag gtattgttaa aaaaatcgct ccttttggag cctttgtgga
    17521 acttaaaaat agtgttgatg gtttattgca tagttcaaaa agcaagcatc ttaatttaag
    17581 cgaaaaccaa agcttaaaag ttaaaatcag cgaaattaaa aacggaaaaa tttctgtgga
    17641 tttgtgtgag tgagtgaatt tctaactcat ccttttgagc ctttttttga caaagattct
    17701 aaaatcttaa ttttaggatc ttttccttcg gtaaaatcaa gacaagatgg cttttattat
    17761 caacacccaa gaaatcgttt ttggcctata ctagaaacac tttttgatgt aagattagaa
    17821 aatatcacag aacaacaagc ctttttaaga aaaaaacata tcgctctttg ggatgtactt
    17881 caaagttgca agataaaaaa ttcagatgat aaaactataa gttatgcaaa agccaatgat
    17941 ttaagcccga tcctttctca aaccaaaatc caagccattt ttactactgg acaaagtgct
    18001 tataaatttt ttattaaatt ccaccctcgc ttaaaagcca tagccctacc ctcaacttct
    18061 cctgcaaatt taaatttttc ttttgaacag cttttacaaa actatgaaat aatcaaaaaa
    18121 tttacaaaat aacaaactaa gcattacccc cccccaagta aaacaagaaa aaagctagtt
    18181 aatatctagc ttttgcgtgt tatccttgaa ttcaaattcc actctcttag ctccaaaacc
    18241 tttagcaata gcttctaaag tatccttagc acttttatga attttgcttt ctaaattttg
    18301 gataagattt aaagacaagt ctttaacctc atctttggct tcttttatga gtttgttttt
    18361 atcactttcg ctaaaactaa tccccgtact attgatagaa tcaggcagta aaaaaggtaa
    18421 aaatttagca tttttttcat cataaaattt catatctatg atgctgtgtt tgtatctaca
    18481 ctctggcatg atgatcttat aagcatcgtc ccctaaaggc aaaatatcaa agtttttatc
    18541 ccttaaatca tacaagaaag tgatctcaaa ttcaaaaatc aaagcaatct gtctttcact
    18601 caaagaccat cctaaaagat ttttccaaat tccattaaaa gcactatctt ttttagtgac
    18661 aatctcttta ctaaaaactt gaaaaacact taattctcct atggatttaa gctgcatgat
    18721 atcgctaaaa ctttgcgtac ttttttcttc tattttaggg cttttatact gcctaaaaag
    18781 cactacaaac aaaagcacaa gcaaaatcat cactaaaaca aataaaatca tttccatttt
    18841 aaacctttct aaatttataa accttgattt gaaaagatat attttttctc aaacgccaag
    18901 aaaataaaag cattaatgat aaaaatcaaa cacacaaaag taaaaacaaa ttccacgcta
    18961 aaatgtgaag ccataatccc tccgccaaaa gctccacaaa aatttcccaa aaattgacaa
    19021 gtttgattaa aaccaaaaat cacacttaaa tttttagcac tcgcactttt tttaagcaag
    19081 gcattcacac aaggcaaaag ccctccaagt cctacaccta taagtaaacg cacgaaaata
    19141 agcgtataaa cattacttac tacagcctgc aaataaaagc aaattccaca aaatatcaaa
    19201 gctccaaaaa taatcttact aggccctatc ttatcggcga tttttccaag ttttggtgcg
    19261 aaaaaaagat tgctaatccc acttgcagcc actactatac ccgcccaaag agccaaattt
    19321 ccaccttgat gaatttgctc aacatagata cttaaaatcg gcatcactcc aaaagtacca
    19381 aattgtatca caaaagtagt gataaaaaga acgataataa gggttttgtt ttctttcact
    19441 ttttgagtat ttttcttcgc ctctttttga atttttctct catggatgaa aaaataaatc
    19501 gtcacaaaag aacaagcgat caaaaaagcc accatatcaa aaaccgtact aatactaaaa
    19561 aattcagcca caaagccacc aaacaaaggc ccaagcaaac ttccacttat agaagccgta
    19621 gaaagagttc ctaaagcata agccactttt tctttaggtg ctatcacagc gataaacaca
    19681 acagcagcag aagtaaaacc cgaaattatc cctgttaaac cccgcacaaa aactacttct
    19741 aaagcactat gagcaaagct aagccataag gttaaaaccg acatcccaaa acttgcacga
    19801 agaagcatat ttttataacc atactttgca cccaaaaaag cccacaaagg tgaaaaaaca
    19861 gccataaaaa gtggagtgat cccaaaagca agccctgagt aaaacgctat ttcactcgta
    19921 tcaacatgtc ctagttcttt gatataaaaa ggcaaaatcg gagcgatttg actaagcccc
    19981 atacttgtgg taaaaacacc aaaccaacac acaagcaaag ttctattgaa attttccatg
    20041 gatttattgt atgatatttt ttataatttt taattaaaac tcaaggataa aaatgaaaaa
    20101 aatactcttt atatgcttag gcaatatatg ccgttcgcct atggcagaat ttatcatgaa
    20161 agatcttgtc aaaaaagcaa atttagaaaa agaatttttt ataagcagtg ctggaacttc
    20221 aggagaacac gatggagaag gtatgcacta tggcaccaaa aacaagctta ctcaacttaa
    20281 catagaacac aaaaacttca caagcaaaaa actcactcaa aagctttgcg atgaaagcga
    20341 ttttttaatc accatggaca attctaactt caaaaatgtt ttaaaaaact tcaccaacac
    20401 ccaaaacaaa gttttaaaaa tcactgattt tagccctagt ctaaactacg atgaagtccc
    20461 tgatccttgg tatagtggga attttgatga aacttataaa attttatccc tagcttgtaa
    20521 aaatttactt gtttttttat caaaataatt taaaacaact atatattact tcttgtttac
    20581 tttttaggct tatacttcta aacgaaccga aaaacattca taagaaaaac tccttaaaat
    20641 tacacgccta gcttaaatcc ctttagctag gcttttcttt agatgttttt atccttcgga
    20701 tttaaaattt ttactatttt aagtgcttct taagaaaaaa ctccaaattt atgtgctaca
    20761 attacgatgt tttattaatt tttgacaagg agaattctca tgaaactagt taaacttagt
    20821 ttagttgcag ctcttgctgc aagtgctttt tcagcagcta acgctactcc acttgaagaa
    20881 gcgatcaaag atatcgatgt atctggagta ttaagataca gatatgaaag tagcaatcca
    20941 tggagcaatg cgaattttgg ttctggtatt tctggaaaac aagatcataa atacagagca
    21001 caagttaact tcagcggtgc tatatcagac aactttaaag ctttcgttca atttgactac
    21061 aactcacaag atggtggtta tggcgcagat agcatcagca acacaagtga tactttatca
    21121 gttcgtcaat tatatttaac ttatacaaat gaagatgttg ctacaagcgt aatcgctggt
    21181 aaacaacaat taaacaccat ctggacagat aacgctattg atggtttagt tggaacaggt
    21241 attaaagtag taaacaacag cattgatggt ttaactttag ctgcttttgc aatggatagc
    21301 ttcaatgaag cttcagatac tactgtaaca attactcaag ataactctca aaaaattaca
    21361 ggagttcaat ttaatcgtgg aaatcctaaa ggtgatagtg atgtaagtgg tgctttagat
    21421 tggagcaaaa atatttatgg tgctgcagct atcggctctt atgatatcgc tggtggacaa
    21481 ttcaacccac aattatggtt agcttatatg agcgataatg cattcttata tgctttagat
    21541 gcagcttata gcacaactat ctttgatgga attaactgga ctatcgaagg tgcttaccta
    21601 ggaaattctg tagataataa acttaaagat agattagatg cagcaaatgg taatttcttt
    21661 gctttaagag gcactgttga ggtaaatggt tgggatgcaa gtcttggtgg tttatactat
    21721 ggtaaaaaag ataaagttac tttaaccaca attgaagatc aaggtaatct tggctctttg
    21781 cttgcaggtg aagaaatttt ctatactaat ggttctaatt taaatggcga tattggtaga
    21841 aatatctttg gttatgtaac tgctggatat acttttaatg aaacagttcg cgttggtgct
    21901 gactttgtat acggtggaac aaaaacaaat ataattggtc aaggtggtaa aaaacttgaa
    21961 gctgttgcaa gagtagatta caaatactct ccaaaactta acttctcagc attctactct
    22021 tatgtaaatg ttgatacaga tcctgaaagc actcatcatg atgctgtaag acttcaagct
    22081 ctttacaaat tctaagaagc ttttaagtct aacttcaagg cggggttttg ctccgccttt
    22141 ttttatgcct gatttttaaa acttaaattt atataaaaag attttcccaa gctaaaacgc
    22201 tttaggaaaa ttaagactta aaccaattag cgattttttc aaaaagtcct ttttgctctt
    22261 gatgcatacc atctttgata ccaaaacttt cacttagttt ttctaaaagt tctttttgtt
    22321 catcgtttaa agaagttgga aatttgatag aaatttgaac gatttgattt cctatgcgag
    22381 aactatgaac atcttttacc ccttcttttt caagaacaaa tctttgtcca tctttagcac
    22441 cctttggtaa atttaaggtc gcttcaccgc gtatggtggg tacttttata ctctctccta
    22501 agatagcttg agtaaaaaac actggaaatt ctatatatat atcatcatca tctctgataa
    22561 aagtatcatc ttcagcggcg atgatcttaa catacatatc ccctctagta ccatttttta
    22621 agatattacc tttagcattg acacgaagct tcatacctgt atctacacct tctgggatat
    22681 taagctcgac actatctttg ctttcattat aacccaaacc tttacaatca ctacattttt
    22741 cactagcttt ttctccaatt ccttgacaat cagggcaagt ttgtgcaaaa gtgataaaac
    22801 cttgagaaac cccaacctgt cctctacctt gacactttgg acaagtttga agctttccat
    22861 ctttagcccc tgttccatta caagttttac aagagcattt ataagtaaag tctatatttt
    22921 tcttacaacc aaaaaccgct tctttaaaac ttaattttaa attaacgata aaatctgaag
    22981 ggattttctc atcatttgaa ctttttctac gacgcgatga gccaaagcct tctccaaaaa
    23041 aactagaaaa tatatctcct aaatcctcaa aaccaccaaa acctgagcta ctagaaccaa
    23101 atccaccgcc ttttaaagca tcttttccgt atctatcata aatagctcgc ttttcatcat
    23161 tgcttaaaac ttcataggct tcattaacaa gcttgaattt atcttctgct tctttatcac
    23221 cttggtttct atcaggatga tattttaaag ccatttttct ataggctttt tttatggttt
    23281 ctttatcagc attttgcgtg atttcaagaa tttcataata acttatttcc acattattcc
    23341 tttaaaaaat ttaaaatttt actagaattt taattttaaa aattcaaaaa tataatttta
    23401 gcaaaaataa aatcaataat ttatcaaatt ttaaataaaa ttatgtaaag attttaaaga
    23461 ctacataaaa atttacaagg acactagaat gattaatgtg ttgatgatag aagatgatcc
    23521 tgactttgca caattattat ctgaatattt agcgcaattt aatattaaaa tcacaaattt
    23581 tgaaaatcct aaaagtgctt taaatgtggg tattcaaggc tatgattgtc tgattttaga
    23641 tttaacttta cctggaattg atggtcttga agtttgtaga gaaatccgac aaaaaagcaa
    23701 tattcctatt atcatctcat cggctagagg tgacttaagc gataaagttg tggggcttca
    23761 aatcggtgct gatgattatc taccaaagcc ttacgatcca aaagaaatgt atgcaaggat
    23821 tatgagtctt attcgtcgca caaaaagagt tgaacacact aataatgaaa atattaactc
    23881 tgctttcaaa attgatgaaa gaagacatga gatcacctat gaagataagg ttttaacact
    23941 tactcctgct gaatttgaaa ttttagaata ccttatccaa caacacggat atagtgtttc
    24001 aagagaacag cttgtaagtc gctgtaaaaa tctaaaagat aaagattcta aaagccttga
    24061 tgttatcatc ggtcgcttaa gggtaaaaat aggagatagt tcaaaatctc caaaacatat
    24121 tttttctgtt agaggtatag gatataaact gataggatga caaaaaatta ttctattcat
    24181 accaaactga ttattttatt tgttgttact tttttcttgg tttgtgtgct ttttatcgtt
    24241 cttttaaaaa tagaagggaa tacctataat gaagaagaaa gtttaaaaca agaaaatctt
    24301 ataaaaaatt tactcatctc ctatgaaaac acttcaggtg ttgaaatagg agcttatctt
    24361 ggaaacagcg gttttaacgc tatacaaaat cccaatcttg taaaagctat aagaaataat
    24421 ggacaatcac tttttaaagc aggcggagag ctttgtactc tttcttcttt aaaatatcat
    24481 agcaatcttt attttgatgt tcaatgtaaa gattttgatg gcttgtatga agaaaatact
    24541 agtgataggg tttataatct tttattgata ggatttttct ctttttcttt gttggttgtt
    24601 tttatgtatt tttctgtatt aaaatcctta gaacctttaa aaaaattaag aagacaagtt
    24661 gccgaagttg caaatgggga acaacctgat tttctagact atcaagaaga tgaagtaggc
    24721 aagatcgcct ttgaatttca aaaagctttc aagaaaaacc aagaattaat ccaatcaaga
    24781 caacttttcc taagaacaat catgcatgag ttaaaaaccc ctataggaaa agggagaatc
    24841 atttctgaaa tgatcaaaga agacagacaa aaagaaagac ttatcgctat atttttacgc
    24901 atggattctt tgatcaatga atttgccaaa atcgaaaatt tattttcaaa aaactacaac
    24961 ttacacttta aacctagtcg ttttagcgct gtacttgaag aagctaaaga acaccttatg
    25021 atagatgatt ttaataaagt tgtaaaagtc gatataagat atgacgcttt aatcaatgtt
    25081 gatatggaaa ttttctctgt aattttaaaa aatcttatcg ataatgcctt aaaatactca
    25141 aacaatggca cttgtgagct tttttgttgt aaagaatgtt ttaccattaa aaatccaggc
    25201 aaacctttag cagagcctat agagcattat cttgaagctt ttacaagaga aaaacacaat
    25261 caagtcaaag gtatgggact aggactttat atagtttcag aggtatgcaa actgcataat
    25321 tttgatttga tttattttta tgatgatgga aaacattgct ttaaaatttt ctttggagat
    25381 aaagaaaaat aatggtaaaa ggcctagaaa aattcaatga acttgttgaa agttttgcaa
    25441 atttacctac cataggaaaa aaaaccgcca taaggcttgc ttatcacctt tgcataaata
    25501 atcaaatcga tggtatgaaa ctcgcacaca atatagaaaa tgctatccgc tttataaaac
    25561 cttgtgagca atgtggtgcc ttaagcgaaa atgagctttg cgaaatttgt agcgatgaag
    25621 aaagaaataa aaacatttta tgtatagttg aaagcccaaa agatatacta acactcgaag
    25681 agagtcaaag ttacaatggg ctatattttg ttttagatga gttaaatgaa gaaaaactcg
    25741 aaaaactaaa gcaaatcata cttaagctaa atatctctga gctcattttt gcattgacac
    25801 atagcattaa ttctgatgca atcatctttt ttatagagga taaatttaaa ggcttaaacc
    25861 taacttttag taaaatcgct caaggaattc caagtggtgt aaatttagaa aatgtggatt
    25921 taatctcttt aaataaagct atgaatttta gaacaaaaat ttagtaattt ttataagaaa
    25981 tatcggctaa ttcttgcaaa gaaaaatccg caatcttttc ataagtaaaa ccttccttgc
    26041 ttaaaaagtc aagtaaagtt ttttccatga ttttagctcc ttgtataagc tcatctgaga
    26101 gcttaaaact catcgcttca atacgctttg gcacacaagc taagatatgt gttttaggca
    26161 aatctcctgc aagttccatg tattgtaagg tttgaagcat ttctatttca tgggcacttc
    26221 cactccagct aattttatta ggcatagcat cataaggaaa gaaaaataca tctcctatac
    26281 tcgcaccttg cgcttctata cagtctaaaa cgataagtct atcgtatcga gcgatgatat
    26341 agctaagctg caaagccaaa gttccaccat caacaaaatc taaagtaaat tcagaatgag
    26401 tgaatttgta gtttttttca agttgtttgc aaagatgaac gcctaagcct tcatccgcaa
    26461 acatgatatt acctattcca aggactaaga atttcaatgc ttttcttctt ttacaaattt
    26521 atatccgcta ataatagcat ccatagcacc atctttacct tttactgcgt taaaaatcgc
    26581 catgtaaata tgtactggca caaaaatcat aattacccac atcaaaattc tatgataagt
    26641 tcttacatcg gccaaaccgc ccattgcagc ttcaagcggt cttaaaatat gatataaaag
    26701 cccacctaag ccctcatggt aagtatgagt ataaagaata agccctgtaa gaatgatacc
    26761 taatatcaca agataaaaga aaaaataagt tacaaattgc aaaggattat aaaccccttt
    26821 taaatgcgga tgttttccta agaaaatgta aaattttact tgttctatcc ataatttgat
    26881 attaaaaata tcccatacac ttctgcgttc ttttgcgctt accttatcgc agaaaaacaa
    26941 atatacttta aaaataatac aagcgattaa aacaaaaccc accgcttgat gtactaagcg
    27001 gtattttgct tgcataaaat ttacgggctc accgttacta atagggcttt ggaacacata
    27061 ggaaagataa taccctgtgc caataagaat cactatagca atagctctta cccagtgcgt
    27121 taaacgcaaa cctatgctaa attcatattc agcttttctt tgcaattttt cttctttgtt
    27181 ttgcatgaaa gcctccttat aaattgacat tcactttata ttcacttaga ttattgccct
    27241 tagtatccat tacatgcacc gcacaagcaa tacaaggatc ataagagtga atttttctaa
    27301 tgatttcaag tggttgtttt acatcagcga ttttaagtcc tatcaaacat tgctcataac
    27361 ttccacctac gccatttgcg tcttttggac ttgcattcca agtagaaggc accacagctt
    27421 gccaattttc aataacacca tttttaattc tacaccaatg gcttaatgtt ccgcgtggca
    27481 catgccccat atagcgtcct ttgtattctt tagaattatc gatcacataa ggagcacaag
    27541 tactctggtc tacttttaaa ttttcaacta aattattaaa cgcttttaaa gcattatttg
    27601 caacgatttt tgcttcaata caacgagcag ctgttcttcc aagtgtgcta aatacagcat
    27661 ttaaaggaag tcctgtttct tttaagaact catctaccac aggaacaaca ttttgattac
    27721 ctttagcata atttacaacg atatttgcta aaggtcctac ttgcatagga tttccttcat
    27781 agcgtggagc tttaatccag ctatatttac ccttagtatc aaacacttta gaatggacat
    27841 tatttccatg atgatctacg ctttctccat ctacaagtcc tgtataattt ggatttgttt
    27901 tgccatcata aggatgtaaa ggttcattgt ctgcatacca agaatgagtt gcctcttcag
    27961 taatcttatc ttcttctact tcataaacct tgcttaaatc tccatttttg ataataccac
    28021 tttcaaaaag ccattcatct cttccgattt ggaattcttt aaaggtataa agattattta
    28081 cccctatatc atttaaaaca cttgcttcat gtgcataagc ttttcctgcc atcacaagat
    28141 caggataata cgcacgatta acaaagtctt gcacttcttg gaatttaacc atatattcac
    28201 ccattcttgc aggatcgagt aaatccataa cgcaagttac accaccaacg gttaagcttt
    28261 gtggatgtgg atttttagct ccaaaaatcg ccatacattg agcaatgatt ctttgaattc
    28321 ttaaacattc tagatagtga gaaagaacga ttaaattttg ctcaggactt aaacgataag
    28381 ttggatgacc atagtacgca ttagcaaaag gtcctaaatt tcctttatct acaaaagttt
    28441 taagtctttg ttgcacttca agaagtttat ccgaacctgt tgcataagga tttggagtgt
    28501 atttaaaagc ttcatcgctt gcttttttaa catcagcatt taaagcactt accacatcag
    28561 cccaatcaag cccatgaagt tgataaaaat gcacaatatg atcgtgtaaa aataaagccg
    28621 cattcattaa agttcttgtt aaaagcgcat ttaaaggcgg agtaataccc aaagcatttt
    28681 caacagcaac tatacctgct ttataatgtg aaaaagtaca aactccgcaa attctttgcg
    28741 tcataaaacc cgcatctctt ggatcacgcc cttttactat ggtttcaata ccacgccaca
    28801 aagtagagcc cgcataagct tcttttacca cattgttatc atcaacaaca acttcaactc
    28861 ttaaatgccc ttcaattctt gtaataggat ctacgattat tttttgactc atttttattc
    28921 cttatctttt tgcatggaag atataactgc gtgtgctgct atagcaacgc ctgtgagtgt
    28981 aagcacacct ataccgattt tatctgaaac actatccgca cccaaaccaa aaacagtatc
    29041 aaatttacga ctagccatag gctcttcaaa aggtcccata gtatcccaaa aattaggctc
    29101 agaacaacct atacaaccat gccctgcttg aataggccaa gaagtgtgct ggttaaatct
    29161 ctctcttgag cagttattaa aagtataagg tcctttacaa cctactttat aaagacaaaa
    29221 accttgtttt gctccttcat ctccaaaagc atgtacaaat tcacccgcat caaaatgtcc
    29281 gcgtctttca caaagatcat gaattcttaa accataagcc cattttggtc tattatacac
    29341 atcaagtgct ggtaactcac caaataataa ataatgaagt acattaccca ctatattttt
    29401 ttcacttgga ggacagcctg gaacattgat cacagtttta cttgttactt tgcttaaagg
    29461 ctgcgcgttg ctaggatttg gtcttgcggc ttgaattcct ccaaagctag aacaggttcc
    29521 tatagcaaaa atcgccaaag cattttcact tgccattttt gaaagctcat agcctgtttt
    29581 tccatgtgca cctatggtta aaaaatgctc cgtatcaccc atagggatac caccttcaac
    29641 cattaaaatg tatttatttt tatgcttttg aatggcattt tctaaatttt cttcagcttg
    29701 ccaacctgct gcagccatca ctgtttcgtg atattctaaa gaaatataat caaaaatcaa
    29761 actatcaatc gttggagtat cacttcttaa caaactctca ctacagcctg tacactcagc
    29821 catatgaagc cacacaacag gaagcctatc agcaagctca gcagcttttg ccaccatagg
    29881 agtaaaactc gctggcaaag ccaaaaatgc cgtcatagca cctgcccatt tcataaaatc
    29941 ccttctagaa aaacctgact tttctaatgc ttttgtaata ctatcattgt ctttcaaaga
    30001 aggaagcttt tcaagagtcg ataaacgcga ctctatttga tgataatcaa tcattatatt
    30061 tcctttgtaa catgaaattt attctctata ataataaaat aaaggaagtt aaaataaagt
    30121 taaaaactta ctatcataag caaatattag catcactctt aattaaagct taatcataag
    30181 ccttttttaa gtttgcgaat caaaaatctt gcaggatgaa tagcgtggat gtattttttt
    30241 tctaaacaca agggttcatt atttatcaat gcacacaaat accttgccgc taaaacactt
    30301 gtactaaaac cccttgaccc atgagcaaaa ttaaaataca aattacaaga cattttagct
    30361 ggtttttgct ccttattttt tgtccataat aaagctttat attcttcttt ataaaacgct
    30421 tcatcataag catttccaac tatcataaag cgatcactcg aataagatct aaaacctact
    30481 ttagaaccta tgatttctaa ttttgtattt ttatccataa aatcggctat attttctata
    30541 ttttgtttat catcttcttc ttttgattct aaacttgcat taagcctatc ataacttgca
    30601 ccaattactt gcaaatcatc ttttacaggg caaatataag ccttagaaga taaaggaaat
    30661 ggggtatcta aaaaaggttt tagatgtgta acttgacctc ttactttgct taatttcatc
    30721 tcatcataaa aaacaaaatc ttttgtatct gcacccatag cataaatcaa aaccgca
//
LOCUS       DARGEM010000003        29581 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.003, whole genome shotgun sequence.
ACCESSION   DARGEM010000003 DARGEM010000000
VERSION     DARGEM010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.003"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..205)
                     /locus_tag="SFZ78_000117"
     CDS             complement(<1..205)
                     /locus_tag="SFZ78_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8211034.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRL"
     gene            complement(202..2181)
                     /locus_tag="SFZ78_000118"
     CDS             complement(202..2181)
                     /locus_tag="SFZ78_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG8211035.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKTTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQKPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(2181..3272)
                     /locus_tag="SFZ78_000119"
     CDS             complement(2181..3272)
                     /locus_tag="SFZ78_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG8211036.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(3269..4474)
                     /locus_tag="SFZ78_000120"
     CDS             complement(3269..4474)
                     /locus_tag="SFZ78_000120"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG8211037.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIEKLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQSNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(4486..6681)
                     /locus_tag="SFZ78_000121"
     CDS             complement(4486..6681)
                     /locus_tag="SFZ78_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG8211038.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKVLLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPLLVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQAATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(6665..6889)
                     /locus_tag="SFZ78_000122"
     CDS             complement(6665..6889)
                     /locus_tag="SFZ78_000122"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG8211039.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(6900..7619)
                     /locus_tag="SFZ78_000123"
     CDS             complement(6900..7619)
                     /locus_tag="SFZ78_000123"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG8211040.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(7671..8864)
                     /locus_tag="SFZ78_000124"
     CDS             complement(7671..8864)
                     /locus_tag="SFZ78_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8211041.1"
                     /translation="MRKNILIFFCFFLFVDISLANTINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILESLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(8861..9667)
                     /locus_tag="SFZ78_000125"
     CDS             complement(8861..9667)
                     /locus_tag="SFZ78_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8211042.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKGLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(9654..10319)
                     /locus_tag="SFZ78_000126"
     CDS             complement(9654..10319)
                     /locus_tag="SFZ78_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211043.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(10389..11567)
                     /gene="trmB"
                     /locus_tag="SFZ78_000127"
     CDS             complement(10389..11567)
                     /gene="trmB"
                     /locus_tag="SFZ78_000127"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG8211044.1"
                     /translation="MPNFKSKKIKEINLPCSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVKFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(11567..12802)
                     /locus_tag="SFZ78_000128"
     CDS             complement(11567..12802)
                     /locus_tag="SFZ78_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG8211045.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDLAGLRSEPSNKVKAAQ"
     gene            complement(12747..13715)
                     /locus_tag="SFZ78_000129"
     CDS             complement(12747..13715)
                     /locus_tag="SFZ78_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8211046.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIVSIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            13793..14893
                     /locus_tag="SFZ78_000130"
     CDS             13793..14893
                     /locus_tag="SFZ78_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG8211047.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            14947..15023
                     /locus_tag="SFZ78_000131"
     tRNA            14947..15023
                     /locus_tag="SFZ78_000131"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14981..14983,aa:Ile,seq:cat)
     gene            complement(15131..15206)
                     /locus_tag="SFZ78_000132"
     tRNA            complement(15131..15206)
                     /locus_tag="SFZ78_000132"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15171..15173),aa:Phe,seq:gaa)
     gene            15346..16689
                     /locus_tag="SFZ78_000133"
     CDS             15346..16689
                     /locus_tag="SFZ78_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG8211048.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFTLEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGNLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            16700..17350
                     /locus_tag="SFZ78_000134"
     CDS             16700..17350
                     /locus_tag="SFZ78_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG8211049.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(17347..18018)
                     /locus_tag="SFZ78_000135"
     CDS             complement(17347..18018)
                     /locus_tag="SFZ78_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG8211050.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(18024..18650)
                     /gene="upp"
                     /locus_tag="SFZ78_000136"
     CDS             complement(18024..18650)
                     /gene="upp"
                     /locus_tag="SFZ78_000136"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG8211051.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(18647..19882)
                     /locus_tag="SFZ78_000137"
     CDS             complement(18647..19882)
                     /locus_tag="SFZ78_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8211052.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(19884..21275)
                     /locus_tag="SFZ78_000138"
     CDS             complement(19884..21275)
                     /locus_tag="SFZ78_000138"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8211053.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            21340..22155
                     /gene="salC"
                     /locus_tag="SFZ78_000139"
     CDS             21340..22155
                     /gene="salC"
                     /locus_tag="SFZ78_000139"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG8211054.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(22192..23523)
                     /locus_tag="SFZ78_000140"
     CDS             complement(22192..23523)
                     /locus_tag="SFZ78_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG8211055.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAVKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(23525..23980)
                     /gene="accB"
                     /locus_tag="SFZ78_000141"
     CDS             complement(23525..23980)
                     /gene="accB"
                     /locus_tag="SFZ78_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG8211056.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            24126..24686
                     /locus_tag="SFZ78_000142"
     CDS             24126..24686
                     /locus_tag="SFZ78_000142"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG8211057.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            24736..25740
                     /gene="pseB"
                     /locus_tag="SFZ78_000143"
     CDS             24736..25740
                     /gene="pseB"
                     /locus_tag="SFZ78_000143"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG8211058.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSTAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINAIGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTESF
                     "
     gene            25742..26872
                     /gene="pseC"
                     /locus_tag="SFZ78_000144"
     CDS             25742..26872
                     /gene="pseC"
                     /locus_tag="SFZ78_000144"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG8211059.1"
                     /translation="MLTYSHQNIDQSDIDTLKKALKDEILTGGKKVNEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVKEKIVLTTPLTFAATANAALMAKAKIEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFAGNSVEMDEISNLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIAKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            26865..28176
                     /locus_tag="SFZ78_000145"
                     /pseudo
     CDS             26865..28176
                     /locus_tag="SFZ78_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            28173..28964
                     /locus_tag="SFZ78_000146"
     CDS             28173..28964
                     /locus_tag="SFZ78_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HEG8211060.1"
                     /translation="MKYFLEHNGKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNETYDKVHSKGKVGVLNEFFRT
                     SGGGVRRTSDPIFSFAVKGAKADIFLKENSSCFGKDSVYEILTREGGKFMLLGLNYGH
                     ALTHYAEERNTSFCRYFKEFKGLVIDELGQKREKRINYYVRDLEKAYVCSLDKINEIV
                     RQTRYYKSIKFAGDFLESYDAKEYVKAIGNALKQDKFAIYEKLLL"
     gene            28985..>29581
                     /gene="legH"
                     /locus_tag="SFZ78_000147"
     CDS             28985..>29581
                     /gene="legH"
                     /locus_tag="SFZ78_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEG8211061.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVR"
BASE COUNT         9777 a         5233 c         4094 g        10477 t
ORIGIN      
        1 aaaggcgttt caaagtaaga aaaaaattta aacctatacc aaaaccactc tctgcgataa
       61 taaaattttc ttgatttttc cattcaaaag aatgagtgta aacaaatttg ctttcattta
      121 agccatcttt ggaattaaaa taaaaatcat caaaatccaa agaaaaagga gtattatcct
      181 taaaaattag cttagctttt ttcatcggtt gttataaaaa taactctcaa ctccatcggc
      241 aataccctta accaataaat cttgaaaagc tttattggcg attcttttgc cttcatttgg
      301 atgtgtaata tagccaattt caatcaaaat tgcaggcatt tgtgcaccta ctaaaaccca
      361 aaaaggtgct tctcttacac cgccatctac aattttatac tttttgcgtg tttgagtgag
      421 tatatttttt tgtacatcaa tggctagttt atttgaagca acgatttttt cacgatttaa
      481 gaaatttaaa atactttgtt ttgagaaata attaatctct tcaaaatccc cttgattttc
      541 tttttctgct gcctttttac ttctttcact tcttgcagga cttaaaaaga aagtttccac
      601 gccttcgcta cttttggctt ttgtggcatt tggtgctgcg ttagcatgta tagaaataaa
      661 caaatccgct cttttatcat tggcatattt ggttctatca cgaagattga taaatttatc
      721 cgaacttcta gtataaagca ctttataacc gcgtttttta agttcatttc caagttttaa
      781 agccgtactt aaaactatat ctttttcttt taaacttcct tttttatcac ttaaagcacc
      841 gctatctttt ccaccatgcc ccgcatcgat aaccacaagc tttcctgatt tgtaatttgt
      901 atttaaagtt ttactagaac tttgagttgc ttttttgttt gcattttgat ttgtagtttg
      961 tatataaaaa cctaaagtga gattattatt atccaactcc tttaaaagtt taaattcttt
     1021 aggagcactc aaaaccacac gaacggtttt tggattgtat tgagtaactg taatcacatt
     1081 ttgtccaaaa gtaaagcttt ttctattacc ttctaacaca cccttaaaac ttacaacata
     1141 tcggaatttt tgatctttgg tatcaaatac tgctatttct ttttcatcca aatcatcgct
     1201 taaatttaac accacagcat tagaaatttt atccacatct aaaacatata aaggtttttg
     1261 attttctttt tcattattgg tttttttatc ttgttttttt gtttctaaaa ctttggtttt
     1321 aatttctgtt ttttgatctt gctttttctc tgaaatttta ctaacttgct cagtcttttt
     1381 ttgactagta gtttcttttg aaaaaattat tttttcttct ttaaaagata tatcaatagg
     1441 aattttttct ttagcataaa ccactatgcg tatggttttg ggattaaact gtgaaatcac
     1501 taaacgatag tcatcaaatt taaactcttt tttaccccct tctaaaaccc catcaaaatc
     1561 actaataaaa cgatagtttc ctttttcgtc taaagcaaaa ctttttaatt gatccttatc
     1621 caaatctgca tttagttcaa actctacacc ttggtttgtt ttacttgact ttaaaacata
     1681 aattttatca tcgctttttg ctttagaaac gatactgctc tttggtgctt gcgaagtttt
     1741 agaatttgtt ttttctgtat tttttatttg ttcgttagat gatttttttt catttttttg
     1801 aactgttttt ataggttcaa aagttgtttt ttcagtgtct tgagaaatat tttgaacctt
     1861 aatatcttta ataacagcct ttcttaaagc attaatactt gcttcactta taccactttc
     1921 ttttaactca ttagcatatg acttgtcatc taaatttaaa gtatttgaac tgatgatcaa
     1981 tctttttaaa atttcaattt tagttttttc atcttcatga ataacacttt gtatataaag
     2041 gcttttgagc tgatggtgaa attttacttg cacttcactt ttagaaccga taaaattttt
     2101 atcaaaattt gcaagttcat tttcataagc tccaaaaaga gttgtgaaag caaatactaa
     2161 aaatacaaaa attttagcca ttattcacca ttaaccaatt tttccataag ttctttaaca
     2221 ctgataagct tatctaaacg atatccattt gcacctgtaa agaaaagtcc tgtttctttt
     2281 ttgcctgacc acgcatcaaa aagcctatct gctatacaat accctacttt agtcgcctct
     2341 tttccacgcc cacaaggcgc tacacaattg cttatacaat taatctttgg acccattctt
     2401 ttatctacca aatttaaaag attggttcta actccacgag caggatagcc cacaggagat
     2461 ttaataagct ctatatcttc ttctttagaa gctagcaaaa cgcttttaaa ctcttcactc
     2521 gcatcacatt caaaagttcc tatgaaacgc gttcccattt gaacaccact agcccctaaa
     2581 gaaatagcat tttctatatc ttttttatcc caaattccac ctgcagcaat cacgggaaaa
     2641 gacccccaat ttttagcctc ttctaccaca ggagcgatta atttttctag ctgataattt
     2701 ggatctaagc actgctcata agtaaaacct tgatgacctc cactttttgg cccttctaaa
     2761 accactgcat caggcaagcg attgtaacgg ctttgccatc ttttgcaaat aatttttaaa
     2821 gcctttgcag atgaaatgat aggcactaaa gccacatcag gaaaatctgc agtaaattca
     2881 ggtaaatttg taggaagtcc agcacctgaa acaatcacat taaaaccaac ctcacaagca
     2941 tcgcgtgcta ttcttgcata atcattactt gcacataaga tattacaccc caaaggtgca
     3001 tcgccacaaa cttttcttgc attattaatc aaagcttgca aacccttgcg tgagtaaaaa
     3061 ttttcacttc cataaggctt agcgtttaat tctttacttg catactttct ttcttcataa
     3121 tatcctgttc ccacagaaga aataatccca agtccaccat ttaaagaaac tgcagaagct
     3181 aatctatccc agcttatgcc tagtcccatt cccccttgaa aaatgggata ttttatagta
     3241 tgttttccta tttgtaaggg ttgtaaattc attcttttac ctttaatttt gcaaattttc
     3301 ttttacctat ttgtaagatg tattctcctt gttctaaata catttgctcg tcgctaactt
     3361 tttgagaatt tacacttact gcattagcac tgatgcttct tcttgccgca gaagtagaac
     3421 tttccaaacc acattcaacc aaagccttag caagccaaat ttttccttgt atttcaaact
     3481 cagccatatc acttggcaaa gcattttgag aatgaattct atcaaattca gacttagcat
     3541 tattagcctc ttctttggag tgaaaacgct ctgtaatctc taaagctaaa ttttctttag
     3601 cttttttagg atgtaaattg ctttgttcta tatctttttt tatttgcgca atttcttcta
     3661 gacttttttg acttaaaagt tcataatatc taaacatcaa ttcatcacta atacttaaaa
     3721 ttttagcata catatcatta gctttttctg taacaccaat gtaattattt aaactcttac
     3781 tcattttgtt tacaccgtct aaaccttcga gtaaaggcat cataatcaca gcttgttctt
     3841 ttcctatgtt ataaactctt tgaagctgtc ttcccatcaa aagattaaat ttttgatccg
     3901 ttccacccat ttcaatatcg ctttttaaag ccacactatc atatccttga agtaaaggat
     3961 acaaaaactc gcaaatcgaa ataggacttt gctctttaaa tctcttggta aaatcgtcac
     4021 gctcaagcat tctagctaca ctaaaagttg aagtaagctc tactataccc gcagctccaa
     4081 gttcattaag ccaagtagaa ttaaacttaa tctgtgtttt ttctttatcc aaaaccttaa
     4141 aaacctgcgt ttcataagtt ttagcattga ttaaaacttg ctctttatcc agctttttac
     4201 gcgttgcact ttttccactt ggatcgccaa tttgtcctgt aaaatctcca atcaaaaact
     4261 gcacaatagc tccatgtttt tgcaaaaaag ccatttttgt taaaaccacg ctatgaccta
     4321 aatgtaaatc aggcgctgta ggatcaaacc ccgcctttat aaagaaattt tcaccctttt
     4381 cataataatt tttaattaat ttttctattc tttcttcatc aataagctct gcacaaccac
     4441 gcttaacttc tgctaatatt ttttttatat ccataataaa cctttttaac cttctttata
     4501 agcatcattt aaagatgtaa aatctaaaat cttgcaacga gattttaacc tatccttgac
     4561 actatctgga ttaatattat caggaatttc cattgtaatc tcaaaataat ctaccgccga
     4621 atttaaatca cttgataaat taattgttaa tagatttatc tgcattttag ctaaaaatgc
     4681 caaaaattcc gctaaaacac cttttttatt ttccaaagaa aaaatcaatt tataagattt
     4741 agggatgtta gaatcccatt ttataaatac catatcttga ttattatcta tcattttatc
     4801 agctctatcg caaagcttat gatggacaat agcgttacca cctttaacaa aagctaaaac
     4861 agcatcacct ctttttggat ggcagcaaaa atcaaaatcc acattagcaa ttttatggtt
     4921 acaatataga gtaaaatttc ctattttttg ttctttaatc tcatatttat caaaccaata
     4981 tgacttcttg gcgtattttt taagaccatt aactatatct ttcaaatagg cactatctgt
     5041 tgctgcttgt ctaatacgtc tggctaaatt ttctttttct atccaagttt caattctgtt
     5101 tttatcaact ccaaaaataa aacttaacat attaatagaa cttgctagat taatctctct
     5161 gattttttgc ttgcaaaatt cccttatact tgcttttgct tttcctgttt taacactatc
     5221 tatccaagaa cagcgataaa atttatcatt gctagtaacc actcgcacaa tatcgccatt
     5281 tttaagctcg gttaacaaag gcactttaat acgatttaca taagcacttt ttgcatgaag
     5341 ccctactttg gtatgcactt cataagcaaa atcaagaacc gttgcaccac gaggcaaagt
     5401 gaaaatttct cccttaggag aataaactgc gacatcttca acataaagac tatctttagc
     5461 atattcataa agttcaatag cattataatc ttctgcattt tcaagattgt ttatactttg
     5521 cattgaaata tctgtaagcc aatcaagacg aggcgcaacc acactgccat cttctttata
     5581 tttccaatgc gctgctatac caaattccgc aattttatgc atatcaaaag ttcgaatttg
     5641 tgcttctata atacttttag catcaaaaag tgtggtatgt atggtttgat aaccattttg
     5701 tttaggcaag gctatataat ccttaaaacg cgaaaccaag ggattaaaat gtgtatgtaa
     5761 aattcccaaa gctaaataac aatcacttac tttttcaacc aaaattctta ccccaagcaa
     5821 atcaagaact tcttcaatac caatgccttt tctttgcatt ttaagataaa tagaatagct
     5881 atgtttaatg cgtttttgaa tttcaaaact accttgtcta aagccattgc tcaaaaataa
     5941 aagttcgatt ttggaaataa attcatttaa acctaattgc atttcttgat tattagagtt
     6001 gatataattg tcaataagct tatactcatc tggcataaga tatttaaaac taagatcttc
     6061 caaataattt tttatgcttg aaataccaag tctatgggct attggggcat atacaactaa
     6121 agtttcttcg ctgattcttt tttgcttatc ttctcttaga atatcaagag taagcatatt
     6181 atgcagccta tcgcataact tcacaatcaa aaccccaaca tcttcaatac ttgctaaaag
     6241 catatttctg aaagtcaagg ctgatttagt taaacttttt ttagattttg atgaaatgag
     6301 attatcttct ctaatttcta taattttagt aagccctaaa acaagtttta aaacctcaga
     6361 accaaactgc tctctaagtt cttcttcagt acagtttgta tcttcgatca catcatgcaa
     6421 taaagcagct aaaatattgc ttttattttc acttaaaaat ccaaccagtg ttgctactaa
     6481 aagaggatgt accgcataag gctctccact ttttctaaac tgcccttcat ggcaaaatat
     6541 acagtaatct accgcttttt caagaatggc atcatggcca caaatttcga aaagcaaaac
     6601 cttagcagct tctaaatctt tacaattttt tacattatcg attaattgtt caagcaataa
     6661 ttcttcatcg attggtttca actaaaccct ctaaagtgat tttattttct gcaatttcat
     6721 ataaagctat atctgcaagt ttatttttat ttttatcaaa gtctaccaaa ggggttgctc
     6781 catttgccaa ttgttccgct ctttttgcta ccactaaaga aaggcgatat ctatcattac
     6841 ccattttttc caaagctttt gccgctactt cttctattct tttatccata attttctcct
     6901 taattatttt taacggttga acaaaggcta gtatcacctt gtatgatttt aagtaaatta
     6961 ccctcttcaa acatattaca aaccacaata ggaagtttgt tatctttagc taaagctata
     7021 gctgtatcat ccatcacttt aatattatct tgcatagcct catcataact caaagtattt
     7081 aaaaatactg catcatcaaa ttgttttgga tctttatcat aaactccatt aacttttgta
     7141 gcttttatta ccatatctgc atcaatttcc acagctctta aaatagctgt tgtatccgta
     7201 gtaaaataag ggtttccagt acctgcagca aaaaccacaa cacgaccctt ttctaagtgt
     7261 ctttgcgctc ttctcataat ataagtttca caaaatgctt ccatctgaat ggcgctttga
     7321 accctaactt caagtccaga gctttccaaa gcttcttgta tagcaatagc attgataacc
     7381 gtagcaagca tccccatatg atctccactt gtccttttaa tcaatccgcc cttagcagca
     7441 cttactccgc gaataatatt accaccgcct ataactatgc ctacttctat ttgatttttt
     7501 ataagttctt taatctctga agctatgaat tttaaaatag aattttctat accaaagcca
     7561 ttttcacctg ctaaagcctc tcctgaaaat tttactaaaa ctctttttct ctcttgcatt
     7621 atttctcctt atttaacttg aaattatatt ttaaattcca ttaaatttag ctaatttaag
     7681 ctaatgagtt ccaaaggatt gatatgaaaa tttttttgag ttacttcaaa agtaagatca
     7741 ttttttattc tacccactac ggcacctttt ttaatattct taccaacttt aatattagga
     7801 gcaatcttat ctaaatgtgc gtatattgta tgtatgccat tatcatgttc aacaataaca
     7861 actcgagcta gcatactagt atctttagca aaaactattt ttccatctag cacattttta
     7921 acaactgcat cgcttttatt gcttcttaaa actacattct cgttaaaaat tttaagattg
     7981 taaacaggat caacataatt tccaaatttt tgcttcacag taaaagaatc caatggagct
     8041 atggtttttt ttcctgtgta acgcttgact gaacttcctt gatagcttga acctaattgt
     8101 cttatttttt gattattttt tactatttta gtatcatttt tgtttaaatt tgcaccttct
     8161 ttattattaa taatttttaa ttgatttaat gtttttctaa gctcttcttg ctgagcttgt
     8221 aagtcatcga gtttttttgc atatatggtt cgatctgttt tttgtttatt aatttcgcta
     8281 atttgttttt gttttaaact ttgaagcttg actaattgag cgttgtaatc cttaagacta
     8341 tcattgattt tcttaatctg agcttgttta tcatcaataa gtctgcttac tccctcataa
     8401 tctttagaaa ttttaaaaat ttcttcattt aaaactttgt ttaaactctc taaaatttca
     8461 aaagccacaa aactttcttc actttcgata tagccttgag gaataggtaa atcataggca
     8521 aaatctttag ccatcaaaga tataagctta ctttccatat ttgatttact tttaagcaaa
     8581 tcttcatttt ggcttgcaag ggtgtttaac tcttgatttt gagccttagc acttgcttca
     8641 agcttagaag tttgtgaatt taagctttca atttgcaaac ttaaatcttt caaacttttt
     8701 tcaccattta aaatatcact agccaaatct tcaagttttt tatttagctg ttcttgtatg
     8761 cgtttatttt cttctaaact ttttgttttt tcatttatag tgtttgctaa acttatatca
     8821 acaaacaaaa aaaaacaaaa aaagataaga atattttttc tcatctttta accttgaaca
     8881 taaccgtatt tacacacaac aagcaaataa acaaagtagc taaaaaaatt aaagtcaaat
     8941 gcaaaataaa attaataggt ggaaaaataa tatctacagc ctttaagctt tcttggataa
     9001 tagaaagatc aaaaatttgg gtaaaaaagg caagtaaaat aacaaaagca ataaaacaat
     9061 caaccacaac caccttataa agcataaaag atctaaacca aaacggagct ccaaataaac
     9121 acataatttc aatacgatcg gtatgttcat aaagccaaat tctcatctgc tttaaaaaca
     9181 aaacaaaggc aagtaaaata atgataaaca aaaataacca aaaaacaaat ttcatcaaaa
     9241 taagcaaaga gtatatctta tcatgggttt tggaaaaagt ttcaacctta ctaacaccta
     9301 caatatttaa aagttgattt ttaatcgaat ttagttcatt ttgatcgggc aaagaattta
     9361 attttaaagt ataaaatttt ggtagagaat cttttaaaac tttcaaattc ttttcagaaa
     9421 catcattttt caaacgatca attaaaccct taggatctaa agattcaagt ccagcaaaaa
     9481 atggtacttt tgtttttact acattctgat caagttcagt tttgctgaca actataatat
     9541 tataatcttt attaacaagt tcttcataat gctttaaagt tgcatttgta accaaaataa
     9601 attcaaaagc aaacatcata aaaagtaaag gtaaaattaa agataaatgt gttttaaaaa
     9661 atttcattca tttttccatt ttctatatta aaacgacgat aatccactct taaattacta
     9721 ggaattctat gtgttaccac tataacacaa gttcctaaaa gctctctagc agactttaaa
     9781 agagtccata taatatcaga agaatactcg tccaaatttc ccgttggctc atcgcaaagc
     9841 aaaagctttg gattatgagc taaagcccta gccatagcga cgcgttgttg ctcaccaccg
     9901 ctaagttgat taggcaattt atctgcttta aaagttaaat ttacatgctt taaaagctta
     9961 gcagcttgat catgacatac ttttttgcta taacctttaa tcattaaagg caacataaca
    10021 tttttttcaa cactatattc ttgtacaagt ttataatctt gaaaaataat ccctattctt
    10081 tgacgtaatt ttaaaagttc taaatttcca attttattca tcaaagatcc acatacttca
    10141 agtttaccag aaataggttc taaatctcca taaaaagact ttaaaagcgt actcttacca
    10201 ctcccacttt tacccgtaat aaaaacaaaa tcatcatcct taaaagcaaa actcgcttct
    10261 ttaataacta gttcatcata acctaaagta agtttatttg cttggattaa attaggcatc
    10321 ctttttcctt aatttccctt tttaaatttt taaattatgc tttatttttg cttaattttc
    10381 aagaaaaatt atattttaaa ctgaactttt aaaatttctt ttaattcatt tatcgcttta
    10441 atattttctt gaattttaaa tggctcttta aaagcaaaat caatcgtttt atcaagatgc
    10501 aaataacaat gttcaggctt attaaaagct ccaaaagcaa cctttaaaag caaattctca
    10561 tcttgtttat agatgctttc aaaatgcaag aaaaaatcat ctttttttat agtaatattt
    10621 ttaaagttct gctctatttt tttcaaatcc tctttagaaa atttaaccga tgagagatta
    10681 aattcattta actcatagtt tttacactct tggttaaaat tccacaccca aagatcatat
    10741 atattttttt cttgcttttt ccatctatct tcatatttgc ttgaaatttc taaattttca
    10801 ttttttctaa ggctaaattt tggagcagga aaagtcaaaa attgttctaa agtaaaatta
    10861 aaatactcaa aactatctgt tctaagctca aaacgaccat tttgaactaa aaccctagca
    10921 cattctttgc aaaaatcttt cccaataact cgcctatgag gctttttgtc ccaaggaaca
    10981 gggaaatgta aaaaaatctt ttcaactgat tttgatttta atacactcaa taacaatctc
    11041 gcatcacttt ggattagcaa aatattattt acattttgtg ctttagcaag tttagctact
    11101 tgagttaaag ctgggttgta aatttccacc cctaaaatta aaacatttgg attttctttt
    11161 gcttgataaa gcaaatgtct tcctgatcca aagcctattt ctatataaat tttaccttga
    11221 agcttagaca aaagctcatc aaaattatca acgataaatg gtgttttttc aattaaagca
    11281 ttgtttttaa gtccaaaagc ttcattgata atatcctcac aaaaaccttc tttaaagatt
    11341 tttaaagcct tttgcaaata acctatttta gaaggttttg tatgtttatc gcctttaatc
    11401 acaaaaccat tttgtgcttt tttaatctgc agaaaaaaac tctcttcttg aacctttgta
    11461 taaataagac taacattatc attcttagca agccaaagaa attcaacatc atccttgcta
    11521 caaggcagat ttatttcttt gatctttttg cttttaaaat ttggcactac tgagccgcct
    11581 taactttgtt tgaaggttct gaacgaagcc cggctaaatc aatagcaata acttcataac
    11641 tatattccac ccctggcaaa gcttttacat cttttagtcg cttttcttta atacctttaa
    11701 aaactgcatt ttgctccccg ccatagcgtc ttacttcata ctcaacagct ctagtatcat
    11761 tatcactcca ttctaaattt atcccttcgc ttgtgctttg agccaaaata atactaggag
    11821 ccaaagggtt gcctaaagtt ttaccttcta caccatcttt tggcatagga ctttcaagac
    11881 catctttatc caccattgtt actttataat acttgctttt acctgctcct tctactatat
    11941 cctcataaga atttttatca gtctttgcca aaacactaaa aggaaggaag cttgagctcg
    12001 tagaataaac tttataataa gaaaaatctt catacgtagg agcatcccaa gttaaaatga
    12061 ttttactaga accatctgtg ctagcactta aatgctcaac ttgaggaggt aaagccttgc
    12121 ttgtagaact tacaacttga cttgacccac tctttatccc attaaaactc acagcaataa
    12181 ttctataact tgaattttca ttaggcttta aatcactatc gatgtattca gcgtttaaac
    12241 gattttttac ttctgcaatt tttttaaatt ctttatcatc acctttggtt ctttcaataa
    12301 tataagaatc aaccctaaaa tcaggatgcg gacgccaaat aagtttaata cgattaggca
    12361 aattagtcac agcttgaaca aaaggaacag cttcaagtct tggagctgtg ctcacttcta
    12421 taaccttgcc atcttctgaa atttgtcctt gctcattaaa gcttttcatc atataacgat
    12481 acttagtacc aggctctaat ttagtatcta cataatgagt ttgaaactta tctttaatag
    12541 tgcctacaag tttaaaatca ggattttcat cactagaacg atacagataa aatcctttaa
    12601 tattttcatt atataaaggc tcccattcaa aagcaatatt actcatatca ctaagacttt
    12661 ttaaactttc aacctttggc aagctttcat ttacagcagg ctctttactt gaagctagcg
    12721 aattcatttg cgaaacacta caagcgctaa gcaaaagagt taaaaaactc aagtaaaaac
    12781 tcaagcgaaa tcttttcatc attctctcct aaattaattt gttcaaacat aatattttta
    12841 aaatcttcca tcaaaggtgc tttaacaaaa atttgttctt tggtttttgg atggataaaa
    12901 tacaaaaaat aagcatgtaa cattatccta caatcatact tacccttata accatacaaa
    12961 ctatcaccta aaatatagcg atttaaacta gccaaatgcg ctctaatttg atgagttctt
    13021 cctgtaaaaa gcttagcagc catcaaagtt aaattttcag tttttactac atttataaaa
    13081 gctgattttg cgtttttgct gaatttattt tccttatcta tggctatttt tttaatagca
    13141 ttagaaggcg aacgcattaa aaatttttct actataattt tatcttcttt tagtggcaaa
    13201 tcaattaacg caaggtaaat tcttcccatg cttttatctg caagctgttc acttaatttt
    13261 tgatgggtga aattattttt cgctattagt atagatccgc ttgtatcttt atctaatcta
    13321 tggacaagac cagctcttat ctctcctcct aaatttgata aagtatattt tttttctatt
    13381 aaccaatcca ccaaagtggc atttttaacg ctacttgctc catgaacgac taaatttgaa
    13441 ggtttattta aaacaagcaa gtcttcatct tcgtataaca catcaatatc aaaatccact
    13501 tcaaactgag gttttatctc attgcaaagc tttaaacttg caatagaaac aatatcacca
    13561 tttttaagct taaatgaatt tttatcttga attttatcat taacctgtac acaatctttt
    13621 tctataagta aagcaacttg attgcgactt tggtttaatt ttttagccaa aaatacatca
    13681 agccttgaat tttcatctac taaaaaagtt tgcatttttt ccttagaggt tttgataaat
    13741 ttaaaatttt agtttataat tatagcttta tattaccaac tgaaggcaaa ttttgtttag
    13801 attagataga agaattttaa ctcattttga ctatatgcaa cccattttat ttttacccat
    13861 aattcttatt tcatttttct taatctttga agctaatcct tttttagcag aaaaacaatt
    13921 tgtttatgcc tgtgtgggat tgtttgcttt tatggttttt ttcttctttc ccataaggaa
    13981 atttatttgg attattcctg ttgcttattg gattaatatt tttttattgc taagcgtaga
    14041 tatttttggg gttgaaaaat taggtgctaa aagatggctt gaaattcctt ttactcactt
    14101 tactatacaa ccttctgaaa tttttaaacc tagttttatt ttaatgcttg cctatcttat
    14161 ttatcaaaat cctcctccaa aaaatggata caaacttaaa caattcatca aacttagctt
    14221 ttacatcatc ttgccttttt tgctaattgc aaaagaacct gatttaggaa gtgctatggt
    14281 tttactactt gttggttttg gagtgctttt tatcatggga gttcattata aaatttggtt
    14341 aagtattgtt atagctataa gtgttagctc tcctattatt tatacacatc ttttaaaacc
    14401 ctaccaaaag caaagaattc atgattttat ttcagaaaaa ccaagttatc aagtagccca
    14461 atcaatgata gctattggaa atggtggttt aaccggaaaa tctcaagatg aagctacgca
    14521 aactcatttt aaatttttac ctatttcaac tagtgatttt attttcgctt acatgataga
    14581 aagatttgga tttattgggg gattgacatt aattatattt tatattttac ttatttttca
    14641 tctacttagt ttaaattata aacttaaaga tgattatttt gctagagttg ctattaattg
    14701 tgttgcatta tttattttta tttatgcggc agtaaatatt tcaatgacta taggttttgc
    14761 accagtagtt gggatccctt tgcctttttt tagttatggt ggaagttctt ttactatttt
    14821 tatgattttt tttggaattt tacagcattt aatcactttt agatattttt ggacggatat
    14881 aaaggctaaa taaaatattt ttaagcatta ataagatata attttatctt ttaattcaac
    14941 ttaggcggat ttatagctca gttggttaga gcaaccggct cataaccggt tggtcgcagg
    15001 ttcgagtcct gctaaatcca ccattctaca tataagctat agactctttc tttaaaaaat
    15061 aacttttagt tctttaaata tttcaatctt atataaaaaa gtatgtgatg tgattttttg
    15121 aaagataaag tggtggttag aggcagaatc gaactgccga cacgcagatt ttcagtctgc
    15181 tgctctaccg actgagctat ccaaccacaa tgtttgataa agtaaaaatg taattgtatc
    15241 tttttttctt taatttaagt ttaaatacaa aaataaaatt ttatttccct taaagtttta
    15301 ataagataga atacccgctt tagatcatta tcaaatggaa attttttgaa acaatttgga
    15361 ctagatagac gaacttttaa aattttacta gctggttata ttattattgc attgtttggg
    15421 gctttattgc tacattcaag ctgggcacat acaactccta ttgatttttt ggatgccttt
    15481 tttacaagca catctgctgt tagtatgaca ggattagtag ttaagaacac tgcggttgat
    15541 tttaccttag caggacaaat tattatctta gctttggtgc aaattggagg cttgggatat
    15601 atgggtatag gtttatttgt ttatatactc atacgcaaaa aagttggttt tagtgcaaga
    15661 aatttactaa aagagtcttt attttatcca tcaatggatg gtttatttaa attttttaaa
    15721 aaggttttgc tgttcatttt tactatagaa ttgataggcg ctatacttct caccatgcgt
    15781 tttacccttg aaatgaattt taagaaagct ttatggtttg gaatttttca ttctattagc
    15841 gcttttaata attctggatt tactatattt gaacatggac ttatagctta taaacatgat
    15901 atagcaatta atcttattat cacttctttg attattattg gagggcttgg atattttgtt
    15961 ttggttgaat tatacttttt tcaaagaaaa aaattgcaaa atttaagcct acatacaaaa
    16021 atggttgttg ttgcaagtat ttttcttatt ttctcttcaa cgcttattat ttttgctttt
    16081 gaatactcaa atcctcaaac tataggacat ttttcatttt ttgataaaat tttaagctca
    16141 tattttatcg ctattaatta ccgcacagca ggatttaata ccttagatat gggacatttg
    16201 catgatgcaa gcttattttt tggatcattg tttatggtta ttggtggtgc accaggtgga
    16261 acagctgggg gtatgaaagt aacaactgta atggttttat tactctatgc ttattggagt
    16321 atccgcgatg gaagagttag aatttttgga catgaaattc caagagaaac tatatctaaa
    16381 gcttttatta tagctgtagg ttcagctgtt tatatagtaa tagctgttat tttgctttcc
    16441 ttgctagagt caaaatttga ttttatagcc ttgctttttg aaacttcttc ggcttttgca
    16501 accgtaggaa tttcagtagg aaatggtgga aatttatctt tatgcgcttt gtttagtgat
    16561 cctagcaagg tgattatcat cattatgatg ctaagtggta ggataggtgt ttttgctttt
    16621 ttactctcgg tattcaaaca agacaaagct attcatttaa aattccctga aggaaaggtt
    16681 aatttataaa ggtaaaatcg tgaaaaatct taattatgga atcataggac ttggaaaatt
    16741 tggatcagtt gtagcagatg aactcattgc tggaggtcat actgttatcg ttgcggataa
    16801 agatgaggaa gctttaaaaa gtatacaaaa tcctccaagc tatgcttata ttttagattc
    16861 tacaaatatt tcagccctaa aagaagcagg ctttcatgat gttgaagttg ttattgttag
    16921 cataggagaa aatgttgaaa aatcaatcct tactcttatg gcgcttaaag atataggtgt
    16981 taaaaatatc attgctaaag caacctctaa tatccatggt caaattcttt ctaagttagg
    17041 tgcaacaaag gttatttatc ctgaaaaaga aagtgctaaa agactagtaa aagaattttt
    17101 aactaaagat gctgattatg aagtttttga tctttcagca aatactatac gagctattaa
    17161 gatcaatata gatgaaaaat tagcaggaaa ttctttaaaa catgtagcac aaaatatgaa
    17221 agtgatttct tataaaaaat taaatagcga ctgggaaata ctacctgatt tagaaaccac
    17281 gacagtttat agtggagatg ttgtaattct ccttggaaca gttaaggaac ttagagaatt
    17341 tgaacactaa gcaagattta aagccttgca agcctttaca aaacgcttta aggctgtttt
    17401 ttctttggta gaaattttat gatatataac ttcatctaaa taatatctaa catcttttat
    17461 atctaaatcc cttgttttgg catatttttg aagtatataa tagggaattt taatctttgt
    17521 ttttggaaat tttttcaaaa tttgtttata taaagctttt ttttgcacac aagaaaatct
    17581 agcaaaaaca aaaggcaatc ctgttttttc gtgccatttt gcacataaat cgatatattt
    17641 agaaggatct tttagataaa gctttaaagc cttatcacct ataattactt ttccatcttg
    17701 ttttaatact ttagccagag cgtttgaagt tgctgaactt ggatctttgg catttgatgt
    17761 atttttttct actaatacac ttaaaactct tttattagca caaataccca aatctaaatt
    17821 tttatatttt tttctagcac tttctatgct tgaaatgata gctgcatcaa ttcttctata
    17881 aaataaatct ttatttagct tacttggaac tcctttttta tactccatac ttgctttata
    17941 accattaggt aggggatatt tcttaagata tatatgtaaa ggtaaaagat taatataatc
    18001 aatttttcca aaaatcatct cttttaaaga gtgttaaaca ctctatctcc tgcatctcca
    18061 agccctggga taatataacc tttttcattt aaaccttcat caatacaagc cacaaaaact
    18121 tctacatcat catgcatttg gctaaatttt ttcaaacctt gtggagcagc aagtatggat
    18181 ataaatttta tttttttaac tccttggctt tttaaaaaat tacaagcctc tatagcagtc
    18241 ccacctgtag caaacatagg atctataaca atagcggtgc gtttttttgc atctttggga
    18301 agtttttgaa aataaaaatc cgcctttaaa gtctcttcat ttctcacaaa ccccaaaaat
    18361 ccaacacttg catcaggaat catcttaaaa acactttcaa gcattcctaa tgcagctctt
    18421 aaaataggac aaatcataat cttttcatca agttttttta ctatagtttt ttgtataggt
    18481 gttgaaattt caatttcttt taaagaaaaa tctttactca cttcaaaaag caaaaaagat
    18541 gaaatttcat cgattaacat acgaaattga aagggctttg tctctttagc ccttaaaatt
    18601 cctaacttat gttcgatcaa tggatgattg atacaatgaa tatttttcat tttaagcttt
    18661 caaaataagc tttctcgtta aaatttttta ccttagccac accatctttt accgcagctg
    18721 ctgctacagc tgtacttact gcagctttta ctctttcatc aaaaggtttt ggtatgacat
    18781 aatctcttcc aaattctaag gtacttaaat tataagcctt tttaactgca tcacttacag
    18841 gaagttttgc aagatctgct aatgctttag cagccgctac tttcatattt tcagtgattt
    18901 tacttgcacg cacatctaaa gccccacgga aaataaaagg aaaacctaaa acattattga
    18961 tttgatttgg ataatcactt cttcctgttc ctacaatcgc atcttttcta agtctagcta
    19021 catcttcagg catcacttca ggaataggat ttgccaaagc aaaaatcaca ggatcttttg
    19081 ccatgcttaa aaccatttca tcatcaagaa tttttggtgc actaagtcct aggaaaacat
    19141 cagctccttt taaaacttct tttaaagtct tttccttaga atcaacagca aattcaagct
    19201 tttgaggagt taaatcattt ctatctttag aaatcactcc tttgctatct actaaaataa
    19261 tattttcgac ccctaaattt ctatacattt tagcacttgc tatacctgca gcacctgcac
    19321 cacttacaac tactttgatg tctttaaatt ttttaccact tatttccata gcattcataa
    19381 gtcccgcagt tgaaataata gccgttccat gttgatcatc atgcattaca ggaattccta
    19441 aatcttgcaa agccgcttca atttcaaaac attttggcgc agcaatatct tctaaattga
    19501 tcccgcccac agttggagcc aaagacttgc aaaaatttac aatctcttct atactatgaa
    19561 catcaatttc tatatcataa gcattgacat ttgcaaattt tttaaacaaa caagccttac
    19621 cttccataac aggttttgaa gcctgtgctc ctatgtttcc aagtcctaaa acagcagaac
    19681 catcactaac tatagctact aaattagcct tatttgtata agtataagca agctcattat
    19741 ctttagcgat ttcaaggcaa ggttctgcaa ctcctgggct atacgccaaa gatagatcat
    19801 ggcttgtagc cattggctta cttggtacaa tatcaatttt cccacctaaa tggtatttta
    19861 aagcttcttc ttttaaattc attttatttt cctctaactt ttaaaaaatt ttctattctt
    19921 tttttgcact catcaacctc taaaaattct aatacttcaa aaatactagg acttaccgca
    19981 ctccctgtta aagctatgcg tataggctga gccaaatctt ttaactttgc ttcttttttt
    20041 tctaaaaaat catttgtaaa atcttcaaaa tctttacctg ttttttgatc tttaagtgta
    20101 ttagcaaatg cttggagcaa ttctaaatta tttttgttaa taaatttttg tactgcattt
    20161 tcatcataat tttgcggcgc attaactata ctttttgcac cattgataat atcatgcaag
    20221 gtttttgcac gctctcttaa taaatcaagt aaaaatcctg ccttttcata aacagataaa
    20281 tcaaagccaa gatccttaag ctgacggtta atctcttcaa aaggcaaagt tttaatgtaa
    20341 tgagcgttaa gccattcaag ctttttagca ttataacaag atgcgctttt attaatatga
    20401 taagggtcaa aaagtttttt caaatcttct aatgaaaaaa cctcatcatc accatggctc
    20461 caacctaaac gcacaagaaa attaagcaaa gcttgaggta aaattcccat ttctttgtat
    20521 tccataacat cagttgcccc atgtcttttt gaaagctttt taccatcttc tccatgtatc
    20581 atagccacat gaaaaaattt aggaatttta aaacccaatg cctcataaag cacaatttgt
    20641 ttaggagtat ttgaaagatg atcatctccg cgaatcacat cacttacccc cattaaagca
    20701 tcatcaataa caacagtaaa attataagtt ggagttccat cacttcttgc aatgataaaa
    20761 tcatccatta tatcctctgc tttaaatctc acctcgcctt taaccccatc ttcaaaaaca
    20821 atctcgccac tttgaggcgc tttaatacgc acaacaggtt ctataccctg aggtggcgtg
    20881 cctgtaaatt ctctatatct tccatcatat cttgggcgtt ctttggcggc ttcttgcttg
    20941 gcacgcaatt cttctaattc ttctttactc atataacaat aatacgcctt gccttcatct
    21001 aaaagctttt tgacatattc tttataaaga tcaaaacgct ctgattggta agttacttct
    21061 ccatcatgtt ctaaaccgca ccatttaaaa gcttcgataa ttgctttagt agcttctttg
    21121 gaatttcttt ttaaatccgt atcttcgata cgaagtaaaa aatttccacc attttttcta
    21181 gcgtataaat aattataaag agctgttcta agtccaccta tgtgcaaata ccctgttggg
    21241 cttggagcaa aacgcgttgt aagtttttcg tgcatttttt gccttttctt aaatttttat
    21301 tgatataatg cgatatttat acttaaataa aggtttgaaa tgaaaaaaat tttattaagt
    21361 tttgcatttt ttgcaagttt agctagtgca aataccatta atgctatagc tgtagttgta
    21421 gataaagagc ctatcacaac ttatgatata gatcaaacta tgaaagcact taaaattgat
    21481 agaaataaag ctttaggcgt actcatcaat gaaaaaatgg aaatttcaca aatgaaacaa
    21541 ctaggtattg tagtcaatga tctagagctt gatgatgcta taaataaaat gcttgctcaa
    21601 aacaaaacga ctttaaatgc tttcaaagca aatttaaaat ccaaaaatca aagctatgaa
    21661 caatttcgtg caaattttaa aaaagattta gaaaaaagaa agctttatga aaaaatcgca
    21721 agtatggcaa aaactgattt tagtgatgat ggagcaaaaa aatttttcga acaaaataaa
    21781 gataaattca ctttttatac acaaattaat gcaaatattt atctatcaaa caatcctcaa
    21841 actttagaaa atatcaaaaa tacaaaaaaa acaatcctta aaccacaaaa tgcatcttta
    21901 aacacaagta atgccgatcc aagactttta gggcttttat cacaaattcc tgttggaggc
    21961 ttttcccctg ttttaaatgg aaaaaatggc tatgaactct atgaagttaa aagcaaagat
    22021 ggggcacaaa ctcctgaata tgaacaagtt aaaaatgaag ttttaaacgc ttatgtaagc
    22081 gaacaaagac aaaatttcat acaggattat tttgataaac tccgctctaa aatcaatata
    22141 gaatatttaa gataaaaatt acaattaaaa tttcccttta atagggaaat tttaatgtct
    22201 tgcaagataa tttgtatcgt agttattatt aataaaatca ggattttcca tcatagaaag
    22261 atgaaaatct ttggttgttt ttatcccact tataagcaac tcatctaaag ctactttcat
    22321 ttttgcaata gctttattac gatcttctgc ccaaactaca agtttgccta tcatagaatc
    22381 ataataagga ggcacgctat agtcttgata acaatgactt tccattctga cattgcgtcc
    22441 tgcgggtgga atgtatttag taatcttacc tggacttggc aagaaagttt tggaatcttc
    22501 agctgtgatt ctacattcta tagaatgccc atttaattta atactttctt gagatggtaa
    22561 agcataacct tctgctactt taatcatttg ttctatgata tcaatcccac ttaccatttc
    22621 acttacacag tgttcaactt gcaaacgcgt attcatttct ataaaataaa aatccaaatt
    22681 tttatctacc aaaaactcaa aagttcccgc accttcatag cctatagctt tagccgcttt
    22741 aacagcagtt tcatgaagtc tagtgcgtgt tttttcatca agcaaaatcg caggggattc
    22801 ttctataagt ttttgatggc gtctttgcat agaacaatct ctttcgccca catgaatcac
    22861 attgccaaaa ctatctccta taacctgcac ttctatatgg cgtggatttt gtatgtattt
    22921 ttccatatac atagttccat cgccaaatgc tgtcatagcc tcgctttcag ccgaccaata
    22981 cgctttttca agatcttttt cattttcaac cacacgcata ccacgaccac caccacctgc
    23041 agctgctttt aaaatcacag gataacctat ttctttggca agttttttag ctgcttcagc
    23101 tcctgccaaa gccccatcgc ttcctgggat cacaggtacg cctgctcttt gcatgacttg
    23161 ttttgctttt gatttatcac tcattaaatt catagcttcc acagaaggac ctataaattt
    23221 gatgttatgt ttagcacaaa tttcaacaaa attttgattt tcacttaaaa atccgtatcc
    23281 tggaaaaatc gcatctgctt cagcaatttc agctgctgta ataatagctg ggatatttaa
    23341 atagctttca gaacttcttg ctttgcctat acaaatgctt gcatcagcgt attttaaata
    23401 caaagcatct ttatctgctt cagaatacac acaaattgct tttttaccca tttctttaat
    23461 cgttcttaaa gcacgcagtg ctatttctcc acgattagca attaatatgc ttttaatttc
    23521 cattttataa tttctccacc gcaaataaag gcattccaaa ttctacaggc tgaccatcag
    23581 caactaaaat ttcagcgatt ctacaatcaa attccgcttc aatttcattc atgattttca
    23641 tcgcttcgat aatagctata gtatcgcctt ttttaaccgt actacctact tttacaaaag
    23701 gtgctgcacc tggacttgga gcttgataga aagttcctac catagggctg tttatacttg
    23761 gtttgtttga ttttacactt tgactaggtt gagcttcgtt tacaacgctt acattgatag
    23821 gttgtggagc tggaactgga ggacaaacag gagctggaac gtcacaacac atatctcttt
    23881 caagttctat ttcaaaacca tcttgttctt tgatcttaat tttactaata tttgcttcag
    23941 caaaaaggtt tactaactct ttaatttctt cttttgtcat aaaattctcc taaaatttaa
    24001 gaacttaatc ttgtattata taaaaaaact taaaatttaa ctttaaaaaa gaaaaaaatc
    24061 ataaaaaata tagatttttt aggttataat ccttacaaaa aattacaaat attaaaaggt
    24121 taaaaatggg tttaaaagca gataattgga taagaaaaat ggcattagaa cacaagatga
    24181 tcgaaccatt ttgcgaagca aatataggaa aaggtgtggt aagctatgga ctttcaagct
    24241 atggttatga tatacgtgta gggcgtgagt ttaaaatttt taccaatgtt aattcaactg
    24301 tagtggatcc aaaaaatttc gtagaagaaa atgtagtaga ttttgaaggc gatgtatgta
    24361 tagttcctgc aaattctttt gccctagcta gaactataga gtattttaaa atgcctgatg
    24421 atgttttagc tatttgcctt ggcaaaagca cttatgcaag atgtggcatc atcgtcaatg
    24481 ttactccttt tgaaccaggt tttgaaggac atatcactat agaaatttca aatactacgc
    24541 ctttacctgc aaaaatttat gctaatgaag gcatagcaca agtgttgttt ttacaaggcg
    24601 atgaaaaatg cgacaccact tacaaagata aaaaaggcaa gtatcaagct caaacgggca
    24661 taaccttgcc aagaatttta aaataggaac acttattgct ttaattttaa aaaaacttaa
    24721 gcaaaggaag gcaaaatgtt taacaaaaaa aatatcttaa tcacaggcgg aacaggctct
    24781 tttggaaaaa cctatactaa ggttttgcta gaaaattata aacctaataa aatcatcatt
    24841 tattctcgtg atgagcttaa acaatttgaa atggcaagcg tttttaacgc tccttgcatg
    24901 cgttatttca taggagatgt aagagacaaa gagcgtttaa gcactgctat gcgtgatgtg
    24961 gattttgtta tacatgctgc tgcgatgaag catgtgccta ttgctgaata taaccctatg
    25021 gaatgtataa aaacaaacat ccacggcgcg caaaatgtca tcgatgcttg ttttgaaaat
    25081 ggggttaaaa aatgtatcgc tcttagtacg gataaggctt gcaatcctgt aaatttatac
    25141 ggtgcaacca aacttgcaag cgataagctt tttgtcgctg caaacaacat agcaggtaac
    25201 aagcaaacac gctttggtgt tacaagatat ggcaatgttg taggttcaag aggttcagtg
    25261 gtgcctttct ttaaaaaact catcagcgaa ggagctaaag aacttcctat caccgatacg
    25321 agaatgactc gtttttggat cagccttgaa gatggagtaa aatttgtact gagtaatttt
    25381 gaaagaatgc atggaggaga aatctttatc cctaaaattc cttcgatgaa aatcaccgat
    25441 ctagcccatg ctctagctcc taatttaagc cataaaatca taggcataag agcaggagaa
    25501 aaactacatg aaatcatgat ttcaagcgat gatagtcatt taacctatga atttgaaaac
    25561 tactatgcta taagcccgag tattaaattt gtagataaag ataatgactt tagtatcaat
    25621 gccataggcg aaaaaggaca aaaagtaaaa gatggttttt cttatagttc ggataataat
    25681 cctttatggg caagcgaaaa agaactttta gaaatcatca atcacaccga aagtttttaa
    25741 aatgcttact tattctcatc aaaacatcga tcaaagcgat atagatacgc ttaaaaaagc
    25801 tctaaaagat gaaattttaa cagggggtaa aaaagtaaat gaatttgaag aagccctttg
    25861 tgaatatgtg ggtgtaaaac acgcttgtgt attaaactca gccacttcag cccttcatct
    25921 tgcctacaca gcactaggcg tcaaagaaaa aatcgtttta accacccctt taaccttcgc
    25981 tgctacagct aatgcagcct taatggccaa agctaaaata gagtttatcg acattaaaaa
    26041 cgatggcaat atcgatgaaa aaaaactaga agcaagactt ttaaaagata gcaaaaatat
    26101 aggagctatt agcgtggtag attttgcggg caatagcgtt gaaatggatg aaatttcaaa
    26161 ccttgctaaa aaatacaata ttcctttaat cgatgatgca agccatgctt taggtgcttt
    26221 gtataaaagt gaaaaagtag gaaaaaaagc cgatctttct atcttttctt ttcaccctgt
    26281 taagcctatc actacttttg aaggtggagc tgtggtaagc gataatgaag agcttatcgc
    26341 taaaatcaaa cttttaagaa gtcatggcat cgttaaaaaa aggctttggg atagcgatat
    26401 ggtagaactt ggctataatt accgcttaag cgatgttgct tgtgctttag ggataaacca
    26461 gcttaaaaaa ctcgatcaca atcttgaaaa aagagaagaa atcgcaagtt tttacgataa
    26521 agaatttgaa aaaaatcctt atttttccac gataaaaatc aaagactata aaaaaagctc
    26581 gagacattta tatcctattt tgctttttcc tgagttttat tgtcaaaaag aagaactttt
    26641 tgaaagctta cttcatgcag gaattggcgt acaggtacat tataaaccaa cttatgagtt
    26701 tagtttttat aaaaaactct taggagaaat aaaacttcaa aatgcggata atttttacaa
    26761 agccgagctt agcatacctt gtcatcaaga aatgaatcta aaagatgcaa aatttgtaaa
    26821 agatacttta tttagcattc ttgaaaaagt taaaaaggga tattgtgaat aagctagact
    26881 ttagaagcca agattttagc caaactggaa aggctatgta tgaactagct tgcgaacttt
    26941 ttcctatccc tagaagcatc acagggcaag gttttagaga tagcttagaa attttaaata
    27001 aaactctggg cggggggggg gatactcaaa tttcactcta taaaaagtgg cacaaaggtt
    27061 tttgactgga tagtccctga tgaatggaac gccaaagaag cctatatcat cactccagaa
    27121 ggagaaaaaa tttgtgattt taaaaagcat aatttacacc ttctaaatta tagcgaagct
    27181 atcgataaag aaatcgaact tgaagaactt caaaatcatc tttactccat agaagaaatg
    27241 cccgatgcta ttccttatgt aacgagttat tacaaaagac gttggggatt ttgtctcacg
    27301 cataatgaaa gaaaaaaact caaaaaaggc aaatacaaag tctatatcaa tgcgaaacat
    27361 gatgaaaatg gagttttgga ttatgctgat tttatcctac ctagtacgca aaattcaaaa
    27421 gatgaaattt taatttcaac ctatctttgt catccttcca tggcaaataa tgagcttagt
    27481 ggtcctgtgg tggctatttt cctagcaaaa tggcttttga gtttaaaaga aagaaagtat
    27541 aattaccgct ttgtcatcat tcctgaaacc ataggctcta tagtctatct tagcaaacat
    27601 ttagagcatt taaaaaaaca tgttaaagca ggctttgtgc tttcttgctt aggcgatgat
    27661 catgcttact cactcataca cacacccaaa aaaaacactc taagcgataa agttgccttg
    27721 catacgctta aaaataaaaa aaatttcaaa gcttttagtt ttttagatcg tggaagcgat
    27781 gaaagacaat acaatgctcc gcttgtaaat cttggcatag taggggtatg tcgcacaaga
    27841 tacctagaat acgaacaata ccacaccagc aaagatgatc tcaattttat ctctgaaaaa
    27901 ggtttaatgg gtggacttca aagcatacaa gaaatgattt taaatctaga aatcaacgct
    27961 gtatatgaaa acaccatagt atgcgagccc aatcttggta aaagaggact atatcacacc
    28021 cttagcactg ctaatgacat tcctttggct tgtaattttt tggcttactg tgatggggaa
    28081 aatgatatca tcgatatagc caatatctta aatatgcaag cttatgaatt taaagaactt
    28141 ttggaaaaaa taaaatttta tggactggta aaatgaaata ttttttagaa cacaatggca
    28201 aaaaatactc cgataaggat ttaatagatg ctttttatca actaggtata aaaagaggcg
    28261 atattttatg tgtacataca gaacttttta aatttggcat acctttgctt tctagaaatg
    28321 aatttttaca gactatactc aattgttttt ttgaagttat aggtcaggaa ggcactttga
    28381 tcatgccaac ctttacttat agtttttgca aaaatgaaac ttatgataaa gtgcattcta
    28441 aaggcaaagt gggagtgctg aatgaatttt ttagaactag cggggggggg gttaggcgaa
    28501 ctagcgaccc tattttttcc tttgctgtga agggtgctaa agcggatatt tttttaaaag
    28561 aaaactcaag ctgttttgga aaggatagtg tgtatgaaat tttaactagg gaaggtggga
    28621 aatttatgct tttaggcttg aattatggac acgccctaac gcattatgct gaagagagaa
    28681 ataccagctt ttgcaggtat tttaaggaat ttaagggctt ggtgattgac gagctaggac
    28741 aaaaaagaga aaaaaggata aattattatg taagagactt ggaaaaagcc tatgtatgca
    28801 gccttgataa gataaatgaa atcgtgcggc aaacaaggta ttacaaaagc ataaaatttg
    28861 caggagattt tctagaaagc tatgatgcta aagaatatgt caaagccata ggcaacgccc
    28921 ttaagcagga taaatttgcc atatatgaaa agcttctttt atgaaaaata tttaaaggta
    28981 gtttatgaaa tatttacttg aatttgaaaa taaaaaatac tccacttacg acttcataga
    29041 aactttttac aaactaggac tacaaaaagg cgataccttg tgtgtgcata ctgaactttt
    29101 taatttcggt tttcccttgc tttctagaaa tgaattttta cagactatat tagattgttt
    29161 ttttgaagtt ataggcaaag aaggcacttt gatcatgcca acctttactt atagtttttg
    29221 caaaaatgaa gtttatgaca aaataaattc caaaacaaaa atgggagcat taaatgaata
    29281 ttttcgcaaa caaacaggag taaaacgcac aaacgatcct atattttctt ttgctataaa
    29341 aggagcaaaa gaagaattat ttttaaaaga tacaacaagt tgttttgggg aaaattgtgt
    29401 ttatgaggtt ttaaccaaag agaatggaaa atatatgaca tttggaggcc aaggacacac
    29461 actaacacat tatgcagaag aacaatttaa tgtattttac agatatcata aaattttctc
    29521 tggaatttta attgatgaaa acaatatatc atacaataaa accattagtt attatgttag
    29581 a
//
LOCUS       DARGEM010000004        29547 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.004, whole genome shotgun sequence.
ACCESSION   DARGEM010000004 DARGEM010000000
VERSION     DARGEM010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.004"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1136
                     /locus_tag="SFZ78_000148"
     CDS             <1..1136
                     /locus_tag="SFZ78_000148"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG8211062.1"
                     /translation="LRENFKIILEANKKDMANFTKSGAMKDRLLLDEKRILALCEGLE
                     KIAYIEDPIGKISKGWKNYAGLNIQKISIPLGLICVIYEARPSLSAEIAALMIKSSNA
                     CVFKGGSEAKFTNEAIFTLVNKVLKEFDLQDCFAMFTQRDEILQILAFDDLIDVIIPR
                     GSSNMIQEIANNTKIPLIKQNKGLCHAFVDQSANLDMALKIILNAKCQRVSVCNALET
                     LLIHEKIAKNFISLLIPEFEKFKVKIHAHENTLAYFNNSNLEIFKANENTFDTEWLDF
                     ALSVKLVKDCDEAIEHINKHSSLHSETIISNDASNIAKFQRLINSSCIYANASTRFSD
                     GGEFGFGGEVGISTSKLHARGPMGIEDICTYKYIINGEGQIRE"
     gene            1133..2218
                     /locus_tag="SFZ78_000149"
     CDS             1133..2218
                     /locus_tag="SFZ78_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG8211063.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(2215..3012)
                     /locus_tag="SFZ78_000150"
     CDS             complement(2215..3012)
                     /locus_tag="SFZ78_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8211064.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GALVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(3023..4315)
                     /locus_tag="SFZ78_000151"
     CDS             complement(3023..4315)
                     /locus_tag="SFZ78_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG8211065.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(4434..5438)
                     /locus_tag="SFZ78_000152"
     CDS             complement(4434..5438)
                     /locus_tag="SFZ78_000152"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG8211066.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(5448..6401)
                     /locus_tag="SFZ78_000153"
     CDS             complement(5448..6401)
                     /locus_tag="SFZ78_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG8211067.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPHLSFFENKNATLMALIIGIIISSIVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(6388..7080)
                     /locus_tag="SFZ78_000154"
     CDS             complement(6388..7080)
                     /locus_tag="SFZ78_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG8211068.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(7238..7807)
                     /gene="efp"
                     /locus_tag="SFZ78_000155"
     CDS             complement(7238..7807)
                     /gene="efp"
                     /locus_tag="SFZ78_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG8211069.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            7921..8241
                     /gene="rnpB"
                     /locus_tag="SFZ78_000156"
     ncRNA           7921..8241
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SFZ78_000156"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(8239..8514)
                     /locus_tag="SFZ78_000157"
     CDS             complement(8239..8514)
                     /locus_tag="SFZ78_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211070.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(8495..8881)
                     /gene="fliS"
                     /locus_tag="SFZ78_000158"
     CDS             complement(8495..8881)
                     /gene="fliS"
                     /locus_tag="SFZ78_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG8211071.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(8893..10821)
                     /gene="fliD"
                     /locus_tag="SFZ78_000159"
     CDS             complement(8893..10821)
                     /gene="fliD"
                     /locus_tag="SFZ78_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG8211072.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGQYQSDSEA
                     ENIFSNLGWELDKTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(10824..11189)
                     /gene="flaG"
                     /locus_tag="SFZ78_000160"
     CDS             complement(10824..11189)
                     /gene="flaG"
                     /locus_tag="SFZ78_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG8211073.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASSNIQTDRSQSQGGDDGQ
                     QQGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(11345..13147)
                     /locus_tag="SFZ78_000161"
     CDS             complement(11345..13147)
                     /locus_tag="SFZ78_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8211074.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(13144..14067)
                     /gene="hemC"
                     /locus_tag="SFZ78_000162"
     CDS             complement(13144..14067)
                     /gene="hemC"
                     /locus_tag="SFZ78_000162"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG8211075.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESILRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDKICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(14064..14453)
                     /locus_tag="SFZ78_000163"
     CDS             complement(14064..14453)
                     /locus_tag="SFZ78_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG8211076.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(14450..16159)
                     /locus_tag="SFZ78_000164"
     CDS             complement(14450..16159)
                     /locus_tag="SFZ78_000164"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG8211077.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(16143..17441)
                     /locus_tag="SFZ78_000165"
     CDS             complement(16143..17441)
                     /locus_tag="SFZ78_000165"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG8211078.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(17441..18334)
                     /locus_tag="SFZ78_000166"
     CDS             complement(17441..18334)
                     /locus_tag="SFZ78_000166"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG8211079.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKPGKKLRSKLLLAIADE
                     SEIAFKICTAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(18348..18884)
                     /locus_tag="SFZ78_000167"
     CDS             complement(18348..18884)
                     /locus_tag="SFZ78_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG8211080.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(18887..19150)
                     /locus_tag="SFZ78_000168"
     CDS             complement(18887..19150)
                     /locus_tag="SFZ78_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG8211081.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(19289..19846)
                     /locus_tag="SFZ78_000169"
     CDS             complement(19289..19846)
                     /locus_tag="SFZ78_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG8211082.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(19843..20688)
                     /locus_tag="SFZ78_000170"
     CDS             complement(19843..20688)
                     /locus_tag="SFZ78_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG8211083.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(20689..21813)
                     /locus_tag="SFZ78_000171"
     CDS             complement(20689..21813)
                     /locus_tag="SFZ78_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG8211084.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(21822..22133)
                     /locus_tag="SFZ78_000172"
     CDS             complement(21822..22133)
                     /locus_tag="SFZ78_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8211085.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVYPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(22147..23016)
                     /gene="sucD"
                     /locus_tag="SFZ78_000173"
     CDS             complement(22147..23016)
                     /gene="sucD"
                     /locus_tag="SFZ78_000173"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG8211086.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(23026..24189)
                     /gene="sucC"
                     /locus_tag="SFZ78_000174"
     CDS             complement(23026..24189)
                     /gene="sucC"
                     /locus_tag="SFZ78_000174"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG8211087.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(24190..25092)
                     /locus_tag="SFZ78_000175"
     CDS             complement(24190..25092)
                     /locus_tag="SFZ78_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8211088.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(25089..27293)
                     /locus_tag="SFZ78_000176"
     CDS             complement(25089..27293)
                     /locus_tag="SFZ78_000176"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG8211089.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(27410..>29547)
                     /locus_tag="SFZ78_000177"
     CDS             complement(27410..>29547)
                     /locus_tag="SFZ78_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG8211090.1"
                     /translation="LLLKDYDLSIDGNLSINTKSEFYYFQGRASGELLDFNASISYKD
                     KNLAYKIEDLNIRNITEIFKRVNKRIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTK
                     DNYYLDNISASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSS
                     SKVYLYDLFDEKKVGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELK
                     IDFHDKGEISYSGILALENASISLADFNIIKAFVKLNQNDLNIENASVKNGFLEADFN
                     AKFDLQKQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFK
                     DGLEANLNNPKILFSFSPLLKKLGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLING
                     QTPYENDSFDIVKNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTF
                     DIATNTQNISFGGANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSS
                     NDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGI
                     NQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYG
                     LGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPK
                     FHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         9863 a         5575 c         3670 g        10439 t
ORIGIN      
        1 ttttaagaga aaatttcaaa attatcctag aagcaaataa aaaagatatg gcaaatttca
       61 caaaaagcgg agcaatgaaa gataggcttt tgttagatga aaaacgtatt ttagctcttt
      121 gcgaaggcct agaaaaaatc gcttacatcg aagatcctat aggcaaaatt tctaaaggct
      181 ggaaaaatta tgcgggttta aacatacaaa aaataagcat tcctttagga ctcatttgtg
      241 ttatttacga agcaaggcct agtcttagcg ctgaaatcgc agctttaatg ataaaaagtt
      301 ccaatgcttg tgtatttaaa ggcggaagtg aagcaaaatt tacaaatgag gctatattta
      361 ctcttgttaa taaagtactt aaggaatttg atttgcaaga ttgttttgct atgtttaccc
      421 aaagagatga aatcttgcaa attctagcct ttgatgattt aatcgatgtg atcatacctc
      481 gcggaagttc aaatatgata caagaaattg caaacaatac caaaattcct ctcattaagc
      541 aaaataaagg cttgtgtcat gcttttgtag atcaaagtgc taacttagat atggctttaa
      601 aaataatcct taatgcaaag tgtcaaagag taagtgtttg taacgcttta gaaacgcttt
      661 taatccatga aaaaattgct aaaaatttta taagtctttt aatacctgaa tttgaaaaat
      721 ttaaggtaaa aattcacgcc catgaaaata ctttggctta ttttaacaac tcaaatttag
      781 aaatttttaa agcaaatgaa aatacctttg atacagaatg gcttgatttt gctttaagtg
      841 taaaattagt aaaagattgc gatgaagcta tagagcatat caataaacac agctccttgc
      901 attctgaaac cattatctca aatgatgctt caaatatcgc taaatttcaa cgccttataa
      961 actcatcttg tatttatgct aatgcttcaa cgcgttttag cgatggagga gaatttggct
     1021 ttggtggaga agttggaatt tcaaccagca aattgcatgc aagaggtcct atggggattg
     1081 aagatatttg cacttataaa tatataatca atggggaagg acaaattcga gagtgaataa
     1141 aatagaaata ctaaagcaac actttaaaga aattgctaaa ttaaattcaa gcgaacaagt
     1201 ttggcaaatg cctttttttg cggctttagg cgtaggtata gttttagggc ttagtgtatt
     1261 ttttggaaaa ttaaactatg gactcattgc catgatagga gctttgtctt ttttatatgt
     1321 tccaaacact cctttatatc atagaatggc tgttgtgatg tgctgttctt ttggcatagt
     1381 ttctagtttt ttcttaggaa ttttaactca ttttttgcct gcaatttttg ccttcatccc
     1441 tataggaatt atggccatgg gaagttctat tttaattaga tactataaca ttggtgcacc
     1501 tggatatttt ttctttgtat tttcttgtgt tttaggagcc tattctcctt ttgaagctaa
     1561 ggattttatc tttttagtag gtcttgtttt tcttggagca atggtagcta atttaatggc
     1621 tttgttatat tctatcgttg tgatttatgg atttaaaaat gctttaccta gcgaaattcc
     1681 acctagagaa tatataggtt ttgatgcagt ttttgtggat tctttgatca tgggttcttt
     1741 tgtggctttt tctatattta taggaacttt tttagaactt gaaagaagtt attggatagc
     1801 catttcttgt acagctatta tgcaaggtgt aactttaaat tctatatgga ttaaacaaat
     1861 tcaacgcatc ataggaacgg ccttaggagt atgttttgca tggtggcttt tatctaaaca
     1921 atttcacgat atagagctta ttttacttat gatgtctttg ttttttatag gacaattttt
     1981 agtcaatcga aactatgctt tagctatgat tttctttact ccttatgcta cttatctttc
     2041 ggaagcagct aattttatga gtgaaaatgc agataaatta atactcgctc gtttaattga
     2101 tgttgtaata ggaagcattt tagggctttt aggtggtttt gtgatttaca aaccttatct
     2161 aagagtgcat tttgaacgca ttgcaaaata catctttagg ataaaacaaa aagcttaaaa
     2221 gccaaataaa gcacaagcat tatcccctaa aatttgctct tgttcttttt tagatacgac
     2281 aacttcatta aaagctacta gagccgatga aaaattaaca tttgattcaa aatttgtatg
     2341 tggccaatcg cttccaaaaa caaaattgct aagtggaaaa tgttctttta aaatttcata
     2401 tattttcttt gcaaatttta cagcttgttc attattagca taatctattt ttgctctata
     2461 aaaaccgcta attttaaaaa atattctaga gttttttaag caaattaaat cctctaaatt
     2521 tgttaagttt gcattagctc ttgctaaatg atcgataaca atattacaac cataaggaat
     2581 taaattttca acaatatcaa caagattatt atctaaatct ctttgaattt ctatttgcat
     2641 tttaagctta cttaaatttt caaaaaattg agtccaaacc atacttttaa aatttggtaa
     2701 ttctttgcca attaaattta atctaactcc acaagctttt ctttctttta gttttttaag
     2761 ctcatcaaat ttaatatttt catcaaccac aactatagct tttatatttt catctttttc
     2821 tatactctga agcaaaaatt cattatcaat acctaaaaaa cttggctgaa ctaaagcccc
     2881 tttattaaaa tcataatgat ctaaatttgc tttataatct ttaaaactag cgtcataatc
     2941 aggcttatat cttgcatttg caaccgtatt taactttttc aaaaatatat gtgcgtgagt
     3001 atcaatcttc attaaattat ccttataaaa taaaactcat tataatagta gctaaaatcg
     3061 ccgctataaa tcctataggc acagccttaa taagcaaatc tttaaataat ttttccttat
     3121 atttatcagg gcaagatcct aaaattagac ttcctccaga agaaaaagga gaaatagcag
     3181 aagcttgagc ccctacaaca atacaagaaa aaagcaatgc ctcgcttaat ccactgcttg
     3241 cagcaatgct tggaactata ggaaaaagcg ctggagtaac cacacccaaa gtacttgaaa
     3301 aaagcgacat aaaagctgca atagcacaca ttattaacgg aataaaaatc acattgatct
     3361 cattttctac aagatctgaa aataatttta taacccctgc ttcaactgct atgctaatta
     3421 acatccctac tccacaaatc attatcaagg ttccccaagg aattaaagca acaacttgtt
     3481 tctcatcggc taattttaaa aataaagcaa tggcaacaaa aatcatggct atcatggcta
     3541 tatctatttt tttattaaaa taactaattg tctcattatg tggaaaaata atatttagca
     3601 caggaaagat taaaacaaca acaatcatca taaacatgag aattaaagta gttttttgtt
     3661 tataatcaaa tggatcaggt tttgaaataa cactaatttt tatattattt ttaaaagcat
     3721 taaacacaaa aaaagataat accacaatag gcaagattat agtaaaagca aaaataatac
     3781 tagaatttgc aaaagcttca tttgcttcaa tgcctgaatt ttccatcaat cctcgaaaaa
     3841 taatcccgct ttgagaagtc ataaaatttg ctcctcccaa agcaccataa tttatagcca
     3901 tagctccagc aattttgctt aaaccgattt tatcgcaaag taaaaaagta agtggtgcca
     3961 taaaagctaa aactgtataa aaacctgctc ctaaagcagc tataatagca ctaaccacaa
     4021 aaataacaaa aggaagcaaa taaggatgat tagcaaaacg atacatcaaa tgtccagcta
     4081 atttttcaag agttccattt acggttgcaa aattataaaa caatgagaca gcaaaaataa
     4141 caaaaaatat agaaataggc caaaaagcta tgattttttt aggagctaaa tccataaaaa
     4201 aagctcctat aatataagca aaaatcatag caaaaattcc aacattatgt ctagtaatat
     4261 agcccaaaat aatagccact ataatactag agatgattaa aaaaaccatt atcatccttt
     4321 aaaatattat agggcttata atatcaaaaa atatattttt caaagcataa aaacaaaatc
     4381 taaatttaaa aaatatctat ttagcaacaa atttactcat cttatgaaat tttttataaa
     4441 atatccacat ccagagcaag caaagcaaag cttcctagcc aatgcgaccc aagataatca
     4501 tcttctatat gagctatagc tttatcaaaa tgctctgtag cattgtttct taaaagaatt
     4561 tttaaatttt catcgcaaaa atttgaaagt attttaaaac accaagcacg gcttaaattt
     4621 aacccatcta aatgtgctat tttaccatcg ctcctatcac tcacactcac aggggtaaat
     4681 aaagttgcag gctcttttgc ttctaaattt ggcaaatatg ctttaaaaaa ttttacaaaa
     4741 tcatttttat gtaaaacagc acttaaaagc accgcttcca tcaaaacagg agataaaaac
     4801 tcatctccac aaggctctaa agcttgcata tttttatcat ttaaaaacca ctttttagca
     4861 ctttggatga tgcaatactc caattcttga tcttttttaa atcttgcata ttctaaagca
     4921 aaatacaaag caaaagagct attaaaatgg gttccaactc gtataggata atccatctta
     4981 ggtaaaaact ccttaaattc tttaacaaag aaatcagcta tgccttctaa atttttagcc
     5041 caaatttcag ctttgtcatt ttctttagca agtaaattta tctccaaagt cagttttaaa
     5101 aaccatcccc atccataagg tctttcaaaa cctttgtgtg cagggttttg aagatattta
     5161 agctctcctt ctgctttttc tttgctaaat tgagaatcta gagctttgat gatttcatcc
     5221 tttggagcaa aatgagaaaa atcttttaaa attttcacca aaagccagtg agaatgcacg
     5281 ctagaatgcc aatcataaga accataaaat ataggataca taagttttgg cggtttaata
     5341 tcattgatat cattaaaaga atgtgtgatt ttatttggca attctctaaa aatattttct
     5401 agtgcaataa agctaaattg ttttataaat ttttccattg tttctcctta aaatctaaaa
     5461 gctaaaaaat acattaaaaa gatattagct acaagcaaaa caagtcctga cataaactgg
     5521 gctttaatta cgccattttt atcatccaaa tttaaaagtg ccgcaggaac tatattaaaa
     5581 tttgcagcca taggcgtcat taaagttccg caaaatccac taagcattcc aatcgcacct
     5641 ataatagcag gatttgcatg catttgtatg attaaaatcg gcaaagcaat agcagcagta
     5701 atcacaggaa aagctgcaaa agcattgccc attactatag taaaaagcgc catagcgata
     5761 caatacacag ctactgcaat aaaagcatta tccaaactaa tataactaga taaaagttta
     5821 gatacttgat cgcccattcc tgtagaaaca aaaactaccc caagtgtagc caaaatttgc
     5881 ggtaaaagcg ccgcccaact aatgtgatcc atagtatgtg ctgcatcttt aacagctctt
     5941 ttaggagaag ccttaaacat aaaacaagca actattgaag aaataattat acctataatc
     6001 aaagccatca atgtagcatt tttattttca aaaaaactca aatggggaaa taaaaaagtc
     6061 ccaataagtg taatcaaagg aaccattaaa gcaggaataa aaagtttatt tttataaata
     6121 tttgcatgtt ttatctcgta ttctttttct tctttgctaa cttcgatctt tgctggtttt
     6181 aataaattaa accctgctat aagtgctagt aaaatcacta tacaacccat cacaaaatga
     6241 ggcaaaactc ctgctagtaa aaaagtaaaa ctataactta tccaaaatac cccgccgctt
     6301 attcttgatt ttatatcttt agcttgatta gaaaaactta aaattccaaa aactaaaaat
     6361 aaaattccta caatataata aagtaaatca agacttatca tcactcaacc ctttataagt
     6421 tttttccaat cttttatcaa ataaataaag tctagagcaa tggataatta aagccaaaat
     6481 tccagttggt atagcccaaa ctgataaatg caatggctca acaataatac cattgctctc
     6541 ataaaaagct ttaataaata aaatagaatg cacggctata aaaatatcct ctccaaaaaa
     6601 tacagcaaca ttatccgttc ccgcagaaaa agctttgatt ttttgactat ctttatgtgt
     6661 taagttttta aatttaagct tagctgcagc ttctgccata ggggctatta aaggtcttat
     6721 catctgtgca tgtccgccta aagataaaag ccctaaagct gcagtaactt gtctaaaaac
     6781 aaaataacac attaaaattc gtcctgtact ggcaactttt attttggata ttaaattttt
     6841 agcctgctct cttaagcctt tgcgttccaa aacagcaagt aaaggtaaaa taagccaaat
     6901 tatagcaaca tagcgattat ctacaaaaga ttttcctata tcactaacaa ccttaacaaa
     6961 atcaaaacct gaaacaagtc cagcataaat tccaactgaa gttaccacta aaaaggggtt
     7021 aatctttaaa gcaaaaccta aaacaatcaa aggtatagaa gcaagaagta accattccat
     7081 caaccatctc caatatgaat tagaaatatt atagaaattt taaattgaag aaaagtttaa
     7141 aaaaatattt ttaagaatgg aatgagaaat taagtaacaa aataaatttt atataaattt
     7201 aaaaaagcct tggaatagtc caaaagcttt ttttgtatta tttgttcgct ctttctatat
     7261 actcaccacg cacagtatca acgcgtataa cttcaccttc taacacatga aaaggaattt
     7321 gcactactgc gcctgtttcc aatgtagccg gttttttatt tgatccttga gtatcaccct
     7381 taaaatttgg agctgtttcg atgattttga gttcaacaac ttgtggaact tctacgccga
     7441 tagctttacc attatggaaa agcacatcta ccatcatacc atcaagcatc cattttttcg
     7501 cctcacctac atcatcatca ctaatagcta cttgttcata tgtttgcgta tccataaatt
     7561 ggcaattttc accatcatca taaagatact gcatagtttt atcttctaaa tttggagctt
     7621 cacatttatc acctgcatgg aaagtttttt caagtacttt accatcaata aaagatttga
     7681 ttttaatacg cacaaaagca ggacctttgc ctggttttac atgctgatac tcaactattt
     7741 taaaaggaat tccatcgatt tctattttaa gtcccttttt taaatcaccc attgaataag
     7801 atgccataaa tttcctttgt taaaaaataa aaaacaattt tatcaaattt tgattgatat
     7861 cacaataaaa ttattttatt tgatgaaaaa ataagtaaaa ttacgttaaa atccaaattt
     7921 aaagcatagt aaatgctcgc ttctttttag gagaggaaag tccgagctgc taaagacaaa
     7981 cattccatct aacagatggc tagggtaacc taagggatag tgcaacagaa agaaaactac
     8041 cacgtaagtg gaaaaggtga aacggcgggg taaaagccca ccagcgattt tggtaacaat
     8101 ttcggctatg taaacccaat gtgcagcaag aagggatggt tagcgtcttt gttttaaccc
     8161 ttcgcttgat tttgtttgca aaaacaaaac tagataaatg agcattcaag acagaactcg
     8221 gcttatcgct atgctttttt aagatttaaa atatgtcaac gctttttgaa atttttgaat
     8281 ttcaacagct tttgtttttt tcttttgttc aatcagtata acagcttctt gcaaaagagc
     8341 ttgaacttga taaaatacat catttgcatt ttcttttaaa aaatcttctg aaggcgattc
     8401 tttggctaaa tttttaataa aagctttcat atcaagttca tcaagtaaat tttcaagttt
     8461 attgacatct tcttggatta atgcaagttt aaaatcactg agccactgtt tcattgttat
     8521 gcacttctct ccaagcttct agcaaacctt tggttacatt tataacttca ttgattctat
     8581 cttcgttatt ttctaaattt gccaaagata aaagttgaat ttctcttgta taaagcccgc
     8641 ttaaataatg tgccacttct ccgccttttt catagtttaa agtattaata agctctataa
     8701 aaatagccgt ggttcttttt acaaaataca ctctttgttc tatatcttca tttcttatgg
     8761 ctactttagc tcttgcacaa aaacgcaaaa ttccctcata aagcatttca ataagttttt
     8821 gcggggactc tatccccact tgattttgag aataagcatt ataggctaaa ttattttgca
     8881 tcttttttat ccttaattat tagaattgtt tgccgcatta atcatattag tcacagtatt
     8941 tagctgttga ttgagtttat ttaaaatact ctcatattgc aaccattgat tcgccattgt
     9001 atcatatctt gtatcaatca tagcctgagt cgagtcttta gaggtattta atgatttaat
     9061 atcatttgtc aaactctcat catattttgt aattgaaccg tcttttccag tcatctcttg
     9121 caacgtggct tttaattttg aaaaaatacc tttaccttct ataggcttag aggttatatt
     9181 tacgtcagac aaacctaatt ccttgagaat gttagcatct cctttgattg aaaaatccga
     9241 gctaccatct ccactaaaat tcaacctaaa ccctgtaaca ttgttttgat tataggattc
     9301 aaccttaact tttaagcctt caataccttt actgtttata tgattagcta aattttgaag
     9361 caattcttcc tctgttttcc ctgttaattt aaaattagta ccatcagaat ttttagataa
     9421 atcatatgtt tgattattaa aaactatagt aaaatctcct ggtttaaatt ctaaaccatt
     9481 agtattacct ccattggaat taagatattt acttaaactt cctgtcttaa ttacctctcc
     9541 tgtgtgatta atgtcttcgt atttagtaat atttgaaaaa aaactttcag tagagtctgg
     9601 atcttcttta actttttgtt caaatttaga agaatcaaaa ctcaaagtgc ctgcatcatt
     9661 taaacttaag ccaaaatcct gcatagaaag cataacctta gtgttcactt tattaccatt
     9721 tgcatcttca gtagttccat caacaacttg agaatcaaac aaatcagcaa gaatgcttga
     9781 gcgtattgaa tttacttcac tgatgccttg taaagttcct tttgttccag tttcactatt
     9841 atagtcagtt gcagcattaa gattggttac taaatcatta taagcatcca ccaaatcttg
     9901 catggctttt gtcacacctt caaaatcttg ctgtacatca aaattaattt cacctgtttt
     9961 atttaaagtt aaagtcattc ctacaccaag atcggtaaca gtgttacttg atctaaacat
    10021 cttaatacca tcaagtgtaa attctgcatt ttgcgcagtt tggatatgca aagaagcatc
    10081 cttgatgcca taaccttttt tatccttagc tggatcaata gaactcgttt tatctaattc
    10141 ccatccaaga tttgaaaata tgttttctgc ctctgaatca ctttgatact gaccattcga
    10201 atcttttttt ccagcataga aacttatcgc actgtcttcg cctgtttctt tactggttaa
    10261 agttaagcgg taaggagtgc ctttctctcc tgtgtttaca atcttagcaa caatctctcc
    10321 tccactagct tcattaattt tatcagctaa atctctatag gttgtgtttt tatctactgt
    10381 aacagtatat tctttgccat ttgaaaaaaa agtaagatcg gcagttccat ttaattgtgc
    10441 attaacaaaa ccaccgtcat ttgctaatcc tttgctttga tacacatctt tttgtgcaag
    10501 ttgagtaaca ttgatattca tgctttgtaa agcaacaccc gaattaactg taagacttgc
    10561 tggaggatta tcactaatac ttcctacaac ttttcttttc gcaaaaaccg tagcatcggc
    10621 caatgatgaa acagccgtct gaaaacttag taatttagtt ttgatttctg ttaaatcttt
    10681 ttgtttggtt gtattttctt caattttttt agtataagga tcaatgcgag ctttttgctc
    10741 tgcttctttt aatttatcta tagtatcttg agttaaaacc ccagaaccaa atcctaaact
    10801 agatagacta ccaaatgcca tttttaactc tccttatcaa atatcattcc tatcacatcc
    10861 ctaaaatact cagctaatct catagcttct tcgctaggaa tttgacgaat ttcccttcca
    10921 gtactttttt cagtcacgct aatatacata gaaccgattt tatcgctata accgaaacga
    10981 acattggtat ctagagaatc catttgctca tttaactttt ttgtaatatc agctaacttt
    11041 tcactcacac cttgttgttg tccatcatcg cctccttgac tttgacttct atcggtttga
    11101 atgtttgaac tagcctgtgt ctcacttgtt ctttggctaa tgtttgccaa agctgtatcc
    11161 atttgcccat ttgccttcga tatttccatt ttaaaatcct ttttaaaatt tcctattgct
    11221 agttaaaagc ttatatcgac aaatttataa atttatgaac acctataaag aaaattttat
    11281 ttttcaataa taaaaaataa taagcaaaaa ctgtgccaaa attttaaaat aaatctcaat
    11341 tatcttaaaa aatttcaaat ttattaaaaa gatctggatt attttctaaa atattacgca
    11401 agatcaaatc ttctatcacg cttttagtgc aatctgtttg cttaggccaa gctcttaaat
    11461 aaccctcagc ttcaccttta gcacttgcat ctactccaag tctttcttct ttgataaaaa
    11521 tatctctttt agcatctata ttatttacca cacgccaaac aagcatataa gaattttcaa
    11581 gcttattttc agcatctaaa aatactaaaa tcctaaaatg ttttttaaat tctaaaagtt
    11641 tgtcaaaact ttgttcaatt ttttcttttt tatcaagcaa aatacaaact ataggacttt
    11701 tactttcttt ataaaattgc tttaaattta aaagttctac cttagtttta aaaagttcta
    11761 gtaatttttc atcttctaaa atttcaagct cttcaacttg tatttcttcg caagcatcaa
    11821 gtcctgcttt acccccaaaa caagaattag gtgaagcatg atctaattga tcacaaattc
    11881 cttctgaaat taaaattttc tttgtattaa aacgatctaa catataagga attaaagcat
    11941 cataatcttt caaagaaggt gcatttttat ccacaaaaat tgcatgctta acaaaactca
    12001 tttgccctac tccccaaaat gcatgcataa tttgttgcgc atgagcggga tattttgcat
    12061 cgatttttgc taagataaga ttatgaaaga ccccattttc aggcatatta taatcaatta
    12121 aatcaggtac tgaagtttga agcaagggta aaaaaattct ttcggtacca agccccatga
    12181 tcttatcttc taaaggaggc tttcctacaa ccgttgcttg atagatcgca tcttttttag
    12241 cataaatttt ttctactttc atcacaggaa aaagttcagc aggagtataa aaacccgtat
    12301 gatctccaaa aggaccttcg attttaaact cttctaaatc cacataacct tcaataacca
    12361 catcactatc ataaggtata aaaataccat tttcacaagg agtaattttt gcaggagttt
    12421 ttttaataaa accataaagt aaaagttcaa aaattccctt aggtaaaggt gcttgagaac
    12481 accaaatata aagcggatct ccacctatgg ctatacttac aggcattttt ttaaaaccag
    12541 catttttgta ttcgtgataa aaatttgccc catctttatg aatttgccaa tgcattaaaa
    12601 gttcattttt atcactcatt tgcaaacgat acattccaag attattttga gttttatcta
    12661 aattttgcgt ataaacttgc cccatggtaa taaatttacc cgcatcatct tcccaagttt
    12721 ttagtatggg aagttcttca agtgagttta aaatttcata atcatacaag gctttatttt
    12781 ttttcagtct tttaggagga atatttttaa aacttaacaa attcataaaa aaatccattt
    12841 ttgctttaaa actcgtagga atatgaagct tggtgagttt tgaaatttct tcagccacct
    12901 cttcataatc acgtccaaaa gctaaattta aagccttttc attgcaaaaa gtattcatca
    12961 aaacaggaaa tttatattgt ttatttaatt ttttatctat aggattttta aataataaag
    13021 ccttcccttt ttctcctttt ttagcttcta tataggctaa atgagcgatt tcaagatcta
    13081 catctacagg ttcttcaatt acccttaaaa gatcattttc ttttaaaatt tgaataaatt
    13141 ctttcatatc atactctcag ctttttttaa aagttcttta gcacctttag caataaactc
    13201 cttagccaaa ctctctccaa aacctttaaa atcattcttt ttaatcattc tcttatcttt
    13261 taaaatttca cttccatcgg gtagtccaag taccgcacgc acacaaattt tatctcccaa
    13321 gagctctgcg ttaataccta taggaacttg acaacctcct tctaaagtag caataaattc
    13381 tctttcaatg cttgtttcaa tcaaagcatt ttcatcattt aaacatttta aaagttctaa
    13441 aattttttca tcatttatgc tttctatacc taaagctcct tgagaagccg caggaataag
    13501 ctcatctttg ctaaattcat aaacaaaatt cacttgctta tctaagttta agcgtttaat
    13561 tcccgccatt gccaaaataa tcgcatcaaa atcattattt tttaatttct ctatacgaga
    13621 attgacatta ccacgcaaag aaataatatc taaatcaggt cttaataata aaagctgcat
    13681 cttgcgtcta agactagtag tgcctatttt tgcacctttt ggtaaagaaa gaaaatcttt
    13741 ataattttga cttagcatag catcattgct ttgctctctt ttgcttaccg ctgccaaaac
    13801 taaaccttga ggaaaaaaac taggcacatc ttttaaacta tgcactgcta aatgtgcttc
    13861 ttttcttaat atactttctt caagttcttt tgtaaaaagt cctttaccac caatttttgc
    13921 caaaggagaa tccagcaaaa catcgccttt tgttttaaaa ccttctaaaa gcacttcaat
    13981 ttgatgtgta ttttttaaaa tttgggctac atgctcactt tgccaaagag ccaattgact
    14041 ttttcttgtt gcgataataa gcttcatttt ctatcctcta taatttcaac atcaataatt
    14101 tcttcattag aattttgata ctcttgcttg gtgtattgat attttgattt agttattaat
    14161 ttcaaagcaa taccaaagaa aaatacaaaa attccaaaaa cacttgtaat aatccctgga
    14221 aaaacaagta aaaaccctgc gataacaaaa gaaaattgtg ttaacatatc ctttaagcca
    14281 cccatttgaa attcaagcat atttttccaa aaaattccca ataaaaccgc accaaaaatc
    14341 atactcaaaa gtatgaaaaa taaaaaatta ccaaaaccaa aaaacactat aaaaagtata
    14401 cttgcaataa tttcaagtac aaataaaggg cttaaactta atttataatt cataacactt
    14461 tctttttaag aatttccata agttcatcag tttttataag ttcttttatc aaaccttctc
    14521 tttggataag ctctatttca ttcttttcta atcccttgcc aacaactaaa gcataaggaa
    14581 agcccataag ttcaaaatca ttcattttaa ccccaaaacg ctcatttcta tcatcaagca
    14641 atacctctaa tccaagatta gttaaatcct cataaagctt attagcaaat tctaaagcct
    14701 tttcatcttt gagatttgaa acaataattt caagcacaaa aggagctaaa gttttattcc
    14761 aaatacatcc tttttcatca tgacttgctt caatagctac agccaacaag cgtgaaacac
    14821 ctatgccata acatcccatg taaaaaggct gacttttgcc attttcatct aagaaatttg
    14881 cattcatcgc tttggaatat ttttgtccta gcttaaaaat atgccctact tctatacctt
    14941 tactttgttt taattttgct ccacatttaa cacagcaatc cccttcttta acttcaatca
    15001 aatctttaaa acgatcttta tttaaattta caacatcaat accgattaaa tgataatcct
    15061 tttcattcgc acccataatc atttgctttt cgttttcaag ctcaaaatct atataaaaat
    15121 ctatatcttt taatcccaca aaacctataa aaccagctac taagccagct ttttccaatt
    15181 cttcttcgct cgcatcgact agttcaaggg cactgcaagc attttgagcc ttgatttctt
    15241 gcaaatcatc acttcctctt ataaaaaaca caactaattt gctttcattt tcataaatag
    15301 ctttttttac cactgcttta atcgtataaa aagcattaat tttaaaaaat tgtgctaaag
    15361 aatctatagt tttaatattt ggagtgtgaa atttacttgc ataatttgct tcaggacgct
    15421 catcttgaca agttttttta gctctttttg cagcttcaac attagccgca taatcacaat
    15481 tttcacaaat taaaatatca tcttccccat tttttgccaa aaccataaat tccttagaac
    15541 cacttccacc aatagcccca ctatcagctt caactgctct aaaatcaagc cccattcttt
    15601 gtaaaatttg agaataagtt ttatacataa gctcaaactc acgccctaaa tcttcttcat
    15661 tagcatgaaa actatatcca tctttcatta gaaattcacg acatcttaaa agcccaaatc
    15721 taggccttgc ttcatcacga aatttaagtc caatttgata taagtgcaaa ggaagttgtt
    15781 tatagcttgt gattttgttt tttaccaaag aaagcatagc ttcttcatgt gttggaccta
    15841 aaacaaattc attttctttt ctgtctttaa aacgcaaaag ttcttttcca aaaacattat
    15901 aacgcccact ttcttgccac aaacttgcag gagtgataaa actaagattt acttcttgtg
    15961 ctccagcctt atccatttct tctttaacta tatttttaat cttgtctaaa actctttttc
    16021 ccaaaggcaa gaaattataa agtccgctac caatttgttc tacaaaaccc gcacgcgtta
    16081 aaaaaatatg actaggtaaa ctcgcatctt ttggcgcttc ttttaaactt ggtgcataaa
    16141 atttagtaaa tctcatcatt attctccata tcaaattcac atttatattg atttaaacct
    16201 tcaagattat tttgcaaatc aaaaacataa cgcatagcat taatcactgt atcgctttgc
    16261 attttacctt gtaaatgttt caaatttaca gtaggcgtgt gtaaaaaagc cttaaaaact
    16321 tgatgaatca actttctagc ctcttcttta tcagattttt tcaaatatcc tttttttaac
    16381 gcaatttcaa gttgtttatc tgcatattct ttagcttgca agcgtatagc tttgataata
    16441 ggcatcaaag ccaaatcgtt taaataccta aaaaattcac ttgtttcacg acctattatc
    16501 ccataagcca tacgagcttc ttgttctctt agtgctaaat ttttttgaac cacaatttca
    16561 agatcatcta cagcaaaaac agatatattt tcattttcat tgatatcaat atcccttgga
    16621 actgcaatat caaaaaaata ccttttataa gaaagttctt ctattaaaga atttgtaata
    16681 atagcatttg gtgcattggt agctgagaaa aaaaactcgt attgatttaa atattttttt
    16741 aaattttcta aactatcata ttcgcttaaa acaccaagtc tctcacacaa atctttagct
    16801 ttttgtaaat cacgatttaa aataatcacc ttagcacccg cagcaattaa atgttttgcc
    16861 gcaagttctc ccatctctcc agctccaata acaacagctt ttttttgcgt taaatctgca
    16921 agttcttttg cttttgccac ggcaacgcta gctacagaaa tagaattttt agaaatttga
    16981 gtttcattgc gtaccttagc agcacattta aaagcactat gtactgctct tgaaaggtgt
    17041 actccacaaa aattattttt tacagcaaaa gcaaaggcat cttttaattg tcctgctatt
    17101 tgagtttctc caaccaccaa actatccaaa gaacttgcta cagaaaaaag atggtggatt
    17161 gctccactat cttcaaaaat atcagctttt tcaagtaaaa tatctttatc aacatcacaa
    17221 agtaaagcca aagatttaac aataaactcc gcacaggcca tttttacaaa agcaacaatt
    17281 tcaacacgat tgcaagtact tataaccaaa cattcttcaa tattttcatg agtgctaatg
    17341 atttttaaaa actcactttt tttagcttca ttggaaaagc ttaacttttc ccttaaggca
    17401 atatctgtat ttttatgagt aaaagatata caataataca ttaaaattcc ctatctatca
    17461 tagctttaat aatatcatta agcttgttat tatcatattt ttcaattgct tttctagcct
    17521 tttttgcata agttttagct tctaaaatag ctttttctaa agctttttgt tcttcaaatt
    17581 tagtttttag ccattctttt tcattttcat ttaaatcttt tttaaataaa gtctgcaaat
    17641 atatcctatc ttgttcttgt aaattttcat aaagataaat ataaggcaag gtagttttac
    17701 cctctttaaa atcattcata gcaggttttc caagaatttt ttcatcactc ttaatatcta
    17761 aaatatcatc aatcatctga aaagcaagtc ctaaattttt accatattct gcaaaatctt
    17821 tttcatataa tccagccaaa atagctccgc atctagcact tgcttcaatc aaaacagctg
    17881 ttttattata gatcattttc aaataagctt ctttattgat attaaatttc tctcccaaat
    17941 caacatccat aagttcgcct atagcaagct ttacaacagc atctgaaata atacttgcaa
    18001 atctagcatc cattttgctt aattcataaa aggcttttga atacaaaata tcgcccaaca
    18061 taagagcatt ttttgtacca aattcagcat taacagatct tgctccacgc cttaattcac
    18121 tctcatcgat aatatcatca tgtaataaac tagcaagatg tatcaattct atagctgtgc
    18181 aaattttaaa agcaatctca ctctcatctg cgatagctaa taataattta gagcgtaatt
    18241 tctttcctgg ttttacattt gaaagcatat ttaaaatagg ttcatagcca agttcttcta
    18301 aaaactgttt tattaattca tctatttttt gcactatctt ttccttgtta attgctatta
    18361 ttattttctt tgcttgttaa tggttttacc tgaggttcgt taaaattaat cataggaaca
    18421 acctgattat tttgcggtgg attttgtaaa gctttttttc tcggatctaa aaattctacc
    18481 attaagcgag attccttatc ttctatataa accgtaaaag ttgccaaacc tttattataa
    18541 ccactaaatt ctaaaataag tcttgctcta tcaatatgtg gattagtata atcaggtatt
    18601 aaagtttgag ttacccaatc taaatttctt cttaaactca tcacaaattg acgcggatat
    18661 ttgcgaaatt tcgaatgtac gatgatatta gtattatcaa acaaagtcca ataaaaatca
    18721 aaattttgca ccttatcttc atagcctatt tctttaatct gcacactagc tctctcatct
    18781 tttttaagta taaatttata agtataatca aaagttggtt cagatgctaa aacattacta
    18841 aaaataaaaa aaatacaaat taaacaaggg cttattttaa acaattttag ccttcgtgtc
    18901 ctaaaatttt tgcgcccaat tctatataaa tatcattttg cctttcttct ataaaatcac
    18961 cattttctaa tatgaaattt tttacatcca tttctgttaa accttgtttt tccaaaagtt
    19021 ccaccatggc aatatgatca gcaaaaaatt cctcaaaaac tttttctaag gctcctaaat
    19081 ttccattttg tataatttct ataaattttt cttttggagt tttattaaac atttcatcaa
    19141 aaaaatccat taattttcct tgaaaatata agtttttgat tataaaattt taatcgttaa
    19201 aagtagctaa attaaaataa ttaaaattta aattttattt gcaatgtgta aaattttaga
    19261 agttaaattc cgcatgatgc ggaatttatt atgaatatgg ttttgcttga gtggcgtatt
    19321 ttacacccag atcaaaagct ttagcatttg catcacgagt ttttgcagga accatatgaa
    19381 gcatagtttc ttttaaaaca tctaaatcta tacatttgct catataagca gcaattgcaa
    19441 gtgcaacaac tgattgagta gccacatttc ctacctcatc tttagctatg gtaataatag
    19501 ggatttcaaa aatttgccat tttttataat cttcactttc aggatgtact aaatttggct
    19561 ctacaactat aatacctcct tcttttacac ccccacgaaa acctttataa cccttatctg
    19621 cagtcgaaag cataaaatct acttcccctt ctacagcata aggaaataaa atttctttat
    19681 catcaatgat aatatccacc ttagtaggac cgccacgcac ttgtgaagta taagtagaag
    19741 ccttaaaagc ttgacgacct tctttaatgg ctgcttctgc taaaatttct cctgcggtga
    19801 taacaccttg tccgccttca ccgccaaatc ttaattgata tttcatttta aagctcctaa
    19861 atccaccatt cttttttctt tggctgcacg acgtacttct tcataagcgt ggcagtattc
    19921 tggctgagaa ttatcttcat gtaaaattcc tgttggaaat ttatcttttc tttcttcaaa
    19981 atccatgctt tcaaatttag ctttatccac aacgcgattt ttaatccaat caagcatagc
    20041 tacagcttcg cccattttgt tttttctgcc tagattgata tgacaatttg aaaaaacatc
    20101 tacaaaacta taacccttat gcgctaaagc cttataaatt aaattttcaa gcttattagc
    20161 ttcgatcaca ttaccccttg ccacaaaaga agctcctgca gctttagtta attcacacgc
    20221 atcaaaatta gggtcaatat ttccaaattg agctgttact gtataaaaac cttttggagt
    20281 ggttgggctt gtttgggaat tcgtaagtcc atagataaag ttattgatca caatgtgggt
    20341 taaatcaata tttctgcgac aaccatgtat agtatgattt ccaccaattg ccaaagtatc
    20401 cccatctccg cttactacaa taacatgttt actaggattg gctagtttaa tgcctgttgc
    20461 ataagctatt gctctaccat gagttgtatg aactgtattg caatttacat aagaactcat
    20521 tctgccacta caacctatac ccgaaacaag acaaacatca tccatattcc aaccaagttt
    20581 ttctatcgcg cggataatac attttaaaac aacaccatcg ccacatcccc aacaccattg
    20641 agtaggcatt ttatctactc ttagatattc atcataatta aaagccattt atatattctc
    20701 ctttacctta gcaataattt cacttggagt gataggacga ccatttgcac ggtgcaaact
    20761 aataaaatcg cgacgcgaag ttactctttc aatctcttca agatattgtc ccatattaag
    20821 ctcgcttacc attacttttt taaatttgct tacaacttca gcgatttttt tctcagccac
    20881 tggataaaga gtaatcggac ggaaaagccc cactttaatc ccttgctctc ttaatctttg
    20941 tatagcttct tttgctgaac gactcacgct tccataagca atgattaaaa attcagcatc
    21001 atcaagcata tactcttcat aagtacaaat atcttcttga ttgtttttta ttttacctat
    21061 gagtctttcc atattttttt tcactataac tccatcttca gttggaaaac ctatatctcc
    21121 atgatgaagt cctgtaacat gataacgata acctgtaaag aaaggattta aagttgcagg
    21181 ctcattttct cctgctgcat aaggtttata atccttttta tcgccttcaa attttttacg
    21241 gttatatact ttaatatctt ttaaatcagg taaaaccgct ttaccattca tgtgccctac
    21301 agtttcatcc ataagtaaaa atactggagt catatatttt tcagctaaat taaacgctct
    21361 aatggtttct gtataagctt cttcaagact tgcaggagca atagcaatac ttgcaaaatc
    21421 cccatgagtt ggtgctttag cttgaaacaa atctccttgt gctacacgag ttggaagacc
    21481 tgttgaagga ccacctctca taacattcac aatcacaagt ggaatttcag caataaatgc
    21541 aagtcctatt tgctctgctt ttaaagaaat tcctggaccg ctacttgcag tcatggattt
    21601 tactccactc attgccgcac caatagccac gctaatacct gaaatttcat cttccatttg
    21661 tataaaagtt ccatcatttg caggaagcat atggcttaat tcatgagcta tctcactact
    21721 aggagtaata ggataacctc caaaaaattt acatccacaa tcaatcgcag ctttggcgat
    21781 taaaacatta cctgttgcta taacttctct cattattttt cctatgctaa ttttttgtat
    21841 ttgttatttt ttacggctac agctctatct ttagcctcag cagtaagttt ggcaaattta
    21901 aattcatctc tttttgccac cataatagca aaatcagggc aatgtgtctc acactcggta
    21961 cagcctatac aggattcagg gtataccacc tctatcattt gtcctaaaac cgcatgcaca
    22021 tcatcgcgca tagctaaaac cccagcgggg caatagctaa cacaaatatt gcatgcttta
    22081 catctatgct catctaccca aacaggggta tcttttggag ctgtcatact catgtttttt
    22141 cctttattaa cctaatattt tttgaatttc ttcaccaatc aaagccggag aatccaccac
    22201 atgaattcca tagcttttta aagcttcttt tttagctgca gcgctttcat cagcacttcc
    22261 tactatggca cctgcatgcc ccattctttt gcctttagga gcagttgcac ctgcaatgaa
    22321 tgctaccaca ggtttgctaa tattttcttt aataaattta gccgcttcca cttccaaact
    22381 accaccaatt tcacctatca ttacaatagc tttagtttca tcatcttttt ggaattcact
    22441 taaaagttct ttataagcaa gacctatgat aggatcacca ccaattccta ctgcagtaga
    22501 aattccataa ccaccttgaa ctacctgatt agcagcttca taagttaaag ttccactttt
    22561 tgaaataagc cccacgcaac cttttttaaa aataaaacct ggcataatac ctaacttaca
    22621 ttcttcagaa gtgataatac ctggacaatt tggtccaatg attttcatac cctttttatt
    22681 agcatattgc ttagcaaaca tcatatcctt tacaggcgta tgctcggtga ttacaactgc
    22741 aagcttaata cccgcatcag ctgcttcaat cacgctatca cccacagcaa aagcagggac
    22801 aaagatcaag ctcacatcag cctttgttgc tttaaccgca tctgcaacgg tatcaaaaac
    22861 tggtttacct aaatgagttt gtccgccttt atgaggggtg acacctccaa ctatatttgt
    22921 accataagcc atgcattgct cagcgtgaaa agttgcttct ttacctgtaa aaccttgaac
    22981 tattactttt gtatttttat taaccaatat actcattttc catccttatc ctactaaact
    23041 ttttacaagc tctgcaccgt ttttaagatt ggttgctgct ttgatatttt taagatttga
    23101 attatctaaa attgtctttg cttctgctgc gttagtgcca tcaagacgca ctacaattgg
    23161 aatatttacc tcaacattct tagtagcttc taaaattcca tttgctatcc tatcacaacg
    23221 aacaatacca ccaaagatat tgataaatat aacttttaca tttttatctc ttaaaataat
    23281 ttcaaaagcc tttgcaacag tttctggaga agctccccca cctacatcta agaaatttgc
    23341 aggttttgca ccactataat taataatatc catagttgcc attgctagac ccgcaccatt
    23401 taccatacaa gctacatctc catctaattt cacatagctt aagccaaatt cagccgcttc
    23461 tctttcagca ggattttctt cagtagtatc tctaagttca gcaatttcag gatgacgata
    23521 aagcgcacta tcatcaaaac tgcattttgc atcaagggca taaaaatccc cttctgcagt
    23581 tttaattaaa ggattaattt caagcatatt catatcttta tccatgtaaa gcttataaag
    23641 tttagctatc atagaaatga gttttttgcc ttcatcttta tcaagtccca aaactctcgc
    23701 tacttcaagt ccatgaaaca ttttaaatcc aatttgtgga tcaataccta cttttgcaat
    23761 tttttcagga ctttctttgg ctactttttc tatatccatc cctccttcac ttgaagcgat
    23821 aatggtaatt tgctctgcca ttctattaaa caaaatagcc aaataatact cttttactat
    23881 attagcacca ctttctatat aaagtttttg cacaagtttg ccttcaggtc ctgtttgatg
    23941 agttactaaa ttcattccta aaattttact tgcataatct tttacctcat ctaaattctt
    24001 agcgatttta acaccaccac caagaccacg gcctcctgca tgaatttgag ctttaactgc
    24061 ccaaacacta ccgcctaatt ctttagcatt agccacagct tcatctacgc taaatgcaac
    24121 ttttcccttt aaggtaggga tgccattgtc tacaaaaatt gcttttgctt gatactcatg
    24181 tatgttcatt tattctcctt tatattgata tttgattaaa gatttttcta atttgtcttt
    24241 ttcttgcaaa ctaagatcca ttttcatgat ttcaatcaca ccttcaagtc ctaatcttgc
    24301 cataactccc aaggctttgt tttgcactcc aaattctcca tgtaaaatca cactcatagg
    24361 taaaaactcg ccacttctta tagactcaag cattcttata caagcactag caggggctaa
    24421 ataagctgaa gttttaagat gtttgattac tttagctcca cctgttttaa cttcattttc
    24481 taaatcctca aattcttctt catttaaaaa ttcgcttata tttttatttt taacacttgc
    24541 gtaagatttt accaaaacca tatcatcatt atgaaaacca ataagtcttg tatccactct
    24601 tgacattttg acattaagtt ttttggcaag ttcatactta aatcttgcat tgtctaaaac
    24661 acccgccatg gctataattt tctttgatga aaaaatcccg ctttcataaa gagtattaag
    24721 tagaaaatcc acaggattag ttaaaataat aaaaagcgga tcttctgtaa aatctttaat
    24781 ttttttagca caatcaagca taatgcttgt atttaactga agcaattctt ctctactttg
    24841 cccatctttt ctagcaaaac ctgcactaaa aagcactata tctgaatttt tggtatgagt
    24901 ataatcttta gtgcaaagta aatctatatt taaatttaaa gcagctatgc tttgagtaag
    24961 ctctagttct tttgcgtaaa gcaaatcctc gttaatatct actaaaacaa tttcatttgc
    25021 tatttctctt aaaatcaaag cataagctac gcttgaacct acattgccag cccctataac
    25081 agtgattttc atctttgtcc tattttttct aaaatagcgt taaaagttgc acttggacgc
    25141 ataattttat ttgctttttc atcatcaaat ttataatacc cacccaaatc cactttcaca
    25201 ccttgtgcat cgttaaattc ggctctgatt ttttcttcat tagaagaaag ctctagggca
    25261 atatctttaa aaaagctttg aagctccata tcacttgcct gtcttgctaa atgatttgca
    25321 aaatacattg ctaaataaaa atgacttgtt ctattatcat cttctttgac ttttcttgat
    25381 ggagctttat tattttcaag ccattcgcct atagcctcat caagacattc tgctaaaacc
    25441 ttagctttat gattgccaca cttatttgca taaaattcca aacttgcttg caaagccaaa
    25501 aattcaccca aactatccca acgcagatga ttttcttcga ctaattgttc tacttgttta
    25561 ggtgctgaac cccctgctcc tgtttcaaac atagctccac catttaacat aggcacaaca
    25621 gaaagcattt ttgcacttgt tccaagctct aaaataggaa aaagatcggt taaataatcc
    25681 cttaaaacat tacccgtgat agaaataaca tctttacctt ctcggattaa ctctaaactt
    25741 cttaaacaag cttcttttgg agttaaaatg gctacatttt tacccttttc ttttaaacga
    25801 ttttgtacca aagttatcat gattttatta ctagctcttt tgctatctaa ccaaaaaata
    25861 gcttcggctc cactaagttc tgatctttct atacctaaat caatccaatt taacactgca
    25921 tcaaatttag cctgattagc tctataaata tcaccttttc taaccttatg ttctaataaa
    25981 actttaccgt tagaaactat tttaaaagtt ccttcttctt tagccacaaa ggttttatcg
    26041 tgcgatccat attcttgagc ttttttagcc attaaaccta cattagatac actgccaagt
    26101 tttgaaggat ttaaagtacc atttttatgc aaatcttcaa taactgcctc ataaatagtt
    26161 gcgtaagttt gatcaggaat tacagcattt gtgtcctttt ccttaccttc cttatcccac
    26221 aatcttgcgc catttttaag cattgcaggc atagaagcat caacgataac atcgcttgga
    26281 acatgaagat ttgtaatgcc tttatctgaa tttaccatag aaatatctgc agatttagct
    26341 aaaatttcat tgtatttttt taaaatttca tcttttttgc ttgaattttc gatcttactt
    26401 aaaagctcac ttaaaccatt atttggatta atgcctaatt tttcaaattc atcttgaaat
    26461 tcgataaata attctttaaa aaatactttt accgcataac caaaaagtat aggatcactt
    26521 actttcatca ttgtagcttt taaatgcaaa gaaaaaagca catcatcatc tttgcttgct
    26581 ttaatttctt ttgcataaaa ttcctgaagt ttttgcacat ccataaaagt agcgtctaaa
    26641 atttcatttt tttcaagttt taagccctct tttaaaattt cttttttacc atcaacgctt
    26701 gtaaattcta tattagccac acaatcttga tcgattaaaa ccgctttttc attagagaaa
    26761 aaatcccctt ctttcatata agaaacacga gtttttgagt ttggattaaa ctcaaccaca
    26821 cgataaggat tgttttttgc ataatctttt accgcttttg ttgaacgacg atctgaattt
    26881 ccttgtctta atacaggatt aaccgctgaa cctaaaactt tttgatattt tgttttaatt
    26941 tgcaattctt catcattttt tggctcatct gggtaatttg gtaacatgta acccttatct
    27001 tgcaattctt taatcgccgc cttaagctga ggaatagaag ctgaaatatt tggggtttta
    27061 ataagatttg catccgatct tttgacaagc tcacctaaaa gttctaaagc atcttcacat
    27121 ctttgttcct cttttaaata ctcactaaaa gtagctaaaa tccttccaga caaagaaata
    27181 tccgaggttt ttactcctat atgtgcccta cttaaaaaag ctttcactat aggcaaaaac
    27241 gaataagtcg caagagctgg agactcatct gttaaggtat aagtaatttg catttttagt
    27301 cctttaaaat acttattttt attttcattt ttaagtatat tacaaataaa aaaaaatgca
    27361 agagtaagtt taaagtttgt tttagttttc aaacaaactt taaatatttt taattaagta
    27421 aattagcagg aagttgtatg atatttttaa taagattaaa aggggttttt agagtatctg
    27481 ttaaaatttc ggtatgaaat ttagggtcat ctatacttcc atctattttt aagtttgtgc
    27541 taatttcttg atttttacct aaaattacat aatttaaaat tggaaccttg gatatagctt
    27601 ctgaagctga ttttaaagtt ttaagctcta aactaaaatc cactgtattt aatcttaaat
    27661 ttgctgatcc taaaccatat atatctacac tatcaccatt taaattaata gccgaaacac
    27721 ttaaaagatc tttttttcta ttaaaaataa tctttccatc atgtaagctt aaaccttttt
    27781 gattaaaagt tggagattta aacatcaata aacttggtac agtatcgata aaggaaataa
    27841 gctgatttat accttttaaa tccttcacat aagtattttt aaaatcgatc tgtccatcaa
    27901 aatactccaa tccacttcct tttatactta agttaaacac tccatcttga acagcttgtt
    27961 tttgtaaaaa ctcatttaaa taattatcat caatattgct aacgtttaaa tttaaatcat
    28021 tagaagaata ataaagatca aattttgcat ttcctctaga acctttaaga tctaaagcat
    28081 tgccttttaa atcagcttct actctatcaa aagccaaagt tttattagaa tctgccaaaa
    28141 ttaaagctac atttgctcca ccaaaactaa tattttgggt attagtagca atatcaaatg
    28201 ttgaatttga agagttggaa tgttttctat aaatataact taaatttttt aaatgaattt
    28261 ctttattatc agaacttatt ttagcacttg ctgtatcact ttgagtatga atttccataa
    28321 tgcccttatt ttttacaata tcaaagctat cattttcata aggagtttga ccgttgataa
    28381 gtaaattatt tttaaaataa gcatcattaa cacttgcatt aaaatcttca aaatttaaag
    28441 ttttataata aacattttta gcatcgataa acccaagctt tttaagtaat ggagaaaatg
    28501 aaaataaaat cttaggatta ttaagattag cctcaagtcc atctttaaaa tttaaaatca
    28561 aattccactg aggaatgcta atgttaacat tttgcgaata atctaatttt acttctacat
    28621 tttgattttt taaatctaaa agctctccat tgtcaaaata aagccttgaa atctgagtat
    28681 tgaaatttcc ttgctgtttt tgtaagtcaa atttagcatt aaaatcagct tctaaaaagc
    28741 catttttaac actggcattt tctatattta aatcattttg atttaatttt acaaatgctt
    28801 ttataatatt aaaatcagcc aaagaaatac tagcattctc taaagctaaa ataccactat
    28861 aagaaatttc acccttatca tgaaaatcaa ttttaagctc caaatcactt ttaatttttc
    28921 cgcttttttg ataaaaaggt agtgaaaaat gataatcctc taaagcttta gcaagttttt
    28981 cgtcaaattt tagattatca gacttaatgc gcaaataaat cccaactttt ttttcatcaa
    29041 acaaatcata tagataaacc ttactagaac ttaaatcagc accattatag aaagctttat
    29101 taaagacaaa atcaagcttt tgtttgttta aatttaaatc gagttttgga atttcaatag
    29161 cattcatttt atcatccaaa cgaactttga cattattaac ataacctgat gcgctaatat
    29221 tgtctaaata ataattatct ttagtaaaat ctataaagcc ctgcaaataa tctaaatgat
    29281 aaaattctcc cttagcccta tatgctaccc aaagatttaa actctgcgga agttctattc
    29341 ttttattaac tcttttaaaa atttccgtaa tatttctaat gtttaaatct tctattttat
    29401 aagctaaatt tttatctttg taagagatgc ttgcgttaaa gtcaagcaat tctccacttg
    29461 ctctaccttg aaaataataa aactcgctct tagtattgat acttaaattt ccatcaatac
    29521 ttaaatcata atcttttaat aaaagtt
//
LOCUS       DARGEM010000005        29037 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.005, whole genome shotgun sequence.
ACCESSION   DARGEM010000005 DARGEM010000000
VERSION     DARGEM010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.005"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..712
                     /locus_tag="SFZ78_000178"
     CDS             <1..712
                     /locus_tag="SFZ78_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8211091.1"
                     /translation="ALELIENEEILLNGKSFKASFDVKNFLENLKKTQDLNPEDILLA
                     NELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGSSTGGFVQILLENQALKI
                     TALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVTCDVSFISLINLLYYVDN
                     LALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDFEKECAKLGWLLKNTQKS
                     SIKGKEGNVEYFYYYIKN"
     gene            678..1532
                     /locus_tag="SFZ78_000179"
     CDS             678..1532
                     /locus_tag="SFZ78_000179"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG8211092.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            1519..2229
                     /gene="cmoA"
                     /locus_tag="SFZ78_000180"
     CDS             1519..2229
                     /gene="cmoA"
                     /locus_tag="SFZ78_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG8211093.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2219..2440)
                     /locus_tag="SFZ78_000181"
     CDS             complement(2219..2440)
                     /locus_tag="SFZ78_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8211094.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2437..2871)
                     /locus_tag="SFZ78_000182"
     CDS             complement(2437..2871)
                     /locus_tag="SFZ78_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8211095.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKKS
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(2929..3561)
                     /locus_tag="SFZ78_000183"
     CDS             complement(2929..3561)
                     /locus_tag="SFZ78_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG8211096.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNRGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3572..4222)
                     /locus_tag="SFZ78_000184"
     CDS             complement(3572..4222)
                     /locus_tag="SFZ78_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG8211097.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            complement(4219..4845)
                     /gene="nth"
                     /locus_tag="SFZ78_000185"
     CDS             complement(4219..4845)
                     /gene="nth"
                     /locus_tag="SFZ78_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG8211098.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            4926..5747
                     /gene="peb4"
                     /locus_tag="SFZ78_000186"
     CDS             4926..5747
                     /gene="peb4"
                     /locus_tag="SFZ78_000186"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG8211099.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            5747..6811
                     /gene="fbaA"
                     /locus_tag="SFZ78_000187"
     CDS             5747..6811
                     /gene="fbaA"
                     /locus_tag="SFZ78_000187"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG8211100.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            6906..8348
                     /locus_tag="SFZ78_000188"
     CDS             6906..8348
                     /locus_tag="SFZ78_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8211101.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8345..9298
                     /locus_tag="SFZ78_000189"
     CDS             8345..9298
                     /locus_tag="SFZ78_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG8211102.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9285..10160
                     /locus_tag="SFZ78_000190"
     CDS             9285..10160
                     /locus_tag="SFZ78_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG8211103.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10152..11495)
                     /locus_tag="SFZ78_000191"
     CDS             complement(10152..11495)
                     /locus_tag="SFZ78_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8211104.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFILTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11546..12214)
                     /locus_tag="SFZ78_000192"
     CDS             complement(11546..12214)
                     /locus_tag="SFZ78_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG8211105.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12211..13914)
                     /locus_tag="SFZ78_000193"
     CDS             complement(12211..13914)
                     /locus_tag="SFZ78_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG8211106.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            14009..14890
                     /gene="ppk2"
                     /locus_tag="SFZ78_000194"
     CDS             14009..14890
                     /gene="ppk2"
                     /locus_tag="SFZ78_000194"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEG8211107.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVHSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            14899..16089
                     /locus_tag="SFZ78_000195"
     CDS             14899..16089
                     /locus_tag="SFZ78_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8211108.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            16168..17340
                     /locus_tag="SFZ78_000196"
     CDS             16168..17340
                     /locus_tag="SFZ78_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG8211109.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSNSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            17340..19265
                     /locus_tag="SFZ78_000197"
     CDS             17340..19265
                     /locus_tag="SFZ78_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211110.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDFKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIKIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTIFTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            19267..20637
                     /locus_tag="SFZ78_000198"
     CDS             19267..20637
                     /locus_tag="SFZ78_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG8211111.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(20640..21818)
                     /locus_tag="SFZ78_000199"
     CDS             complement(20640..21818)
                     /locus_tag="SFZ78_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG8211112.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDIHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(21805..22815)
                     /locus_tag="SFZ78_000200"
     CDS             complement(21805..22815)
                     /locus_tag="SFZ78_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG8211113.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            complement(22816..24192)
                     /locus_tag="SFZ78_000201"
     CDS             complement(22816..24192)
                     /locus_tag="SFZ78_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG8211114.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNSFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            complement(24235..24738)
                     /gene="ctf"
                     /locus_tag="SFZ78_000202"
     CDS             complement(24235..24738)
                     /gene="ctf"
                     /locus_tag="SFZ78_000202"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG8211115.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            24918..25913
                     /locus_tag="SFZ78_000203"
     CDS             24918..25913
                     /locus_tag="SFZ78_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8211116.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGITDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            25923..26837
                     /gene="pstC"
                     /locus_tag="SFZ78_000204"
     CDS             25923..26837
                     /gene="pstC"
                     /locus_tag="SFZ78_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG8211117.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVIT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            26834..27922
                     /gene="pstA"
                     /locus_tag="SFZ78_000205"
     CDS             26834..27922
                     /gene="pstA"
                     /locus_tag="SFZ78_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG8211118.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDSTSVLPTQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            27919..28659
                     /locus_tag="SFZ78_000206"
     CDS             27919..28659
                     /locus_tag="SFZ78_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG8211119.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            28722..>29037
                     /locus_tag="SFZ78_000207"
     CDS             28722..>29037
                     /locus_tag="SFZ78_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8211120.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     AIN"
BASE COUNT        10415 a         3776 c         4969 g         9877 t
ORIGIN      
        1 agccttagag cttatagaaa atgaagagat tttacttaat ggtaagagtt ttaaagcttc
       61 ttttgatgtg aaaaattttt tagaaaattt aaaaaaaacg caagatttaa atcctgaaga
      121 tatactttta gccaatgagt taaaattgga tcttttaagt gaaatttatg tttcaagagc
      181 agctttgaaa ttaaaaaaat ttttagaaga aaatgatatt gaaataaaac ataaaaattg
      241 tcttgatata ggatctagta cgggcggttt tgttcaaatt ttacttgaaa atcaggcttt
      301 aaaaatcact gctcttgatg tgggtagtaa tcaactccat ccaagtttaa gagcaaatga
      361 aaaaattatc ttgcatgaaa atacagatct tagagccttt aaaagtgaag aaaaatttga
      421 acttgttact tgtgatgtga gttttatttc tcttattaat ttactttatt atgtcgataa
      481 tttagcttta aaggaaatta ttttactttt taaacctcag tttgaagtgg gaaaaaatat
      541 caaaagagat aaaaaaggtg ttttaaaaga tgacaaggca atcttaaaag caagaatgga
      601 ttttgaaaaa gaatgtgcta agttaggttg gcttttaaaa aatacgcaaa aatcaagcat
      661 taaaggaaag gaaggtaatg ttgaatattt ttactactat atcaaaaatt aatattactt
      721 ctttagccat aggttgtttt gatggtatgc atttaggaca tctaaaactt gtaaaatatt
      781 tagatgagaa tggggctttg ctagttatta ataaatttaa aggtcaattt ctttgttcaa
      841 atcgtcaaaa agaagaaatt tcaggaaaaa aagttataga agtggatttt gaaagtataa
      901 aatctttaga tggtaaagat tttttaagct ttttgaaaaa agaatttacc agtttaaaat
      961 ttatagtcgt gggttatgat ttttcttttg ggaaaaatag ggcttatagt gctaaagata
     1021 ttgagttttt aagtgggata aaaactataa tagttgatga atttagcata ggtggaatag
     1081 gtgttcatgc aagtttaatt aaggattttt tatcaagagc aaatttgcaa aaagcaaaag
     1141 aatttttagg gagaaattat agcatcaaag gaaaggtaat taaaggacaa ggcttaggtt
     1201 ctaaagaact ttttgcaact ataaatttag attgcgaagg ttattttttg cctcaaaatg
     1261 gtgtttacgc tactttgtta aaaagtcaaa gaaaaactta taaaagtgtg agttttttag
     1321 gtgtaagatc aagcgatgaa aattttgcta tagaaagtca tattttagaa gaattgggtg
     1381 aaaatttcac gcaaggagag ttttttgaac tcgagtttat atcttttcta agagagaatc
     1441 aaaaatttca agatctaaaa aaacttaaaa atcaaattac taaagatata gaacaggcta
     1501 gagaattatt aaggaaaaat gatgaaagat gaacttttta aacaaagccc taaaaaacaa
     1561 tttgaatttg ataaaagcgt ggctagtgtt tttgatgata tgatcaatcg ttctgtacca
     1621 ttttatagag aaaatttaga actttgtggc aatttattgg ctaaaatttt acctacaaat
     1681 gcaagtgttt gcgatttggg ctgctcaagt gctaattttt tgattttttt ggcaaatcta
     1741 agaaaggatt ttaaactttt tggcgtggat aattctgctt ccatgcttga agttgcaaaa
     1801 tcaaaagcta aagcttatgg gcttgatata agtttttttg aagctaattt atgcgaattt
     1861 gattttttta cttgcgatgt ttttgtagca aattatacca tgcagtttat tcgtcctcct
     1921 aaaagacaag aattgcttga tcaaatttat aaaaatttaa actctaaagg cattttgatt
     1981 atgagtgaaa aaatccttta tgaagatgct tttttgtcta aaaatatcat agaactttat
     2041 gctgattata aagaaaaaca aggctattct aagtttgaaa tcgcagctaa aagagaagct
     2101 ttggaaaatg ttttaattcc ttatagtcaa aaagaaaatt taaatatgct agaaaaggca
     2161 ggttttaaga aaatagaaag tatttttaaa tgggcaaatt ttgaaacttt catagctttt
     2221 aaggattaga aatattttca tcttcccatt catcttttgg aaaacctatc ttatatgcat
     2281 taacacaatc ttgactaatg atagctttgt gtctgcattc taaacttctt ttttttgctt
     2341 cctcggggtg attttgataa tattctacac ttttggtttg ttcgcatgct gcaaaaaata
     2401 taccaataag gcttaaaaaa agagttattt tcatggtcat ttttcctgtg tcatattaac
     2461 atcatcgcta aagatagaac tttgattgtt ttctgttgtt ttggaaggat aaatttcaga
     2521 aggtgtttct gctataggtg gtattataat actttcatta ttttctgaac tttggttaat
     2581 atcttttgtg gttttttctt tttttaaatc attttgtttt aaagcttcta atatttgatt
     2641 atcagatttt ttcggtgtgt ttggactgta tttaccctct tcatttgttg gtttaacacc
     2701 aacttttaat gcattaatac aatcttcgct aagagttccg ctttttttgc attctttcgc
     2761 tttttctttt gcttcgctag gaagattttt gtagtaattt tctgttttac tatcacaagc
     2821 tgttatatta ataactatta aaattgcaag taaaatactt agtcttcgca tttatcaatc
     2881 tcctaaaatt tttaatatct tagcaaactt gtataaagca acgataaatt atttttcttc
     2941 attgtaagaa aaaataggta aagaccattg atatttgata gctaaaagcc ttgcaaaaac
     3001 tcctataaaa agagttaaaa gtgtgcaaac tagggcatta agctcaagcc aaattattag
     3061 agaataatag attgctcctg caattatggc aattcctgca taaatttctt tttgaaacac
     3121 caaggggatt ctcatacata aaatatctct taaaattcca ccaaaaacac cggtaattac
     3181 agcagcagca acggctatga taaagccacg gttttgatct atggctattt gagctccaag
     3241 tatgctaaaa acaacaagtc ctatagcatc aagagttaga aataaagttt caagtttggt
     3301 tactacgcgc ggaatttttg tggctacaag ggcgcaaaaa cagattaaaa taatatattc
     3361 aggatgttta acccaagtta aaggataatg tcctaaaagc acatctctta tgcttccgcc
     3421 tccaattgct gttacgagag caataaaaat aactccaaaa agatccattt tatggcgtcc
     3481 tgcagctaaa gcccctgtca ttccttctgc ggaaatacct atgatataaa gagtggttat
     3541 cgtaagagca tttatctcca taatttatac cttaaaattt atcacaattt atttgatact
     3601 gtttaatatt ttcatcattt acttcatggt ttggtacttg atagcattct ttaaatttcg
     3661 gagttttaat aatttttaca taaaaacttg gtatagcaat acggctttta atgtattgtg
     3721 gttctttatc gtaaagtact aaatttaaaa cttcgatact ttgaaattct aaagctaaat
     3781 ttctttctct ttgttcgatt tcattccaaa ttttattatt tatttgtgca ttttgtgggg
     3841 taatattact cattaaaaat actgaatttt gagcagcttt actaaagcta aaagaagcat
     3901 tgggtgcagt gtgtcctcgt gtgtaaccac tgtttttata attactccaa gtagtgcggt
     3961 attttttagg aatatttgta tcatcttcaa agcgagggcg ttttttgatt tgtctatctt
     4021 tcaaatttga agcttctacc ttataagcaa cagcttttgt gcctttgagt ttataatcat
     4081 agcaatttag ataaaaaaac ttatctaaga tttgcgagca atttatattg ttaaaataag
     4141 aagaaaaatc agcactaggc ttgtaaggtt ctaaggcaaa aatattaaga gatatagtga
     4201 gtaaaaagat gaaaattttc atttaagttc cttatcttta cttttgcaaa gatgatttaa
     4261 aaagcattct ttacataaag gttttttagc tttacaggtg taacgtccaa aaagaaccat
     4321 ggcttgatga agatagttaa gattatcttt aaatgtgcgt gttaaatctt cttctgtagc
     4381 ttctggagtt tttgctttgc taagtcctaa gcggtgagaa actctaaaaa catgagtatc
     4441 tacagccatg aaatttgctc cgcaccattc tattaaaact acatgagcgg ttttttgtcc
     4501 tacgcctgct aaggatttta aattttgttc atcaagggga atttctccgt caaaattttc
     4561 acaaactgct tttgccattt ttataagatt ttgtgcttta ttattaaaaa atgaacaagt
     4621 ttgtatatag gttttaagac ttgataaatt tgcatttgca agggatttaa tatcaggata
     4681 agctttaaaa agatcaggag tgatgagatt aactctttta tcagtgcatt gggctgaaag
     4741 cattacgcag actaaaagct catataaatt tgaaaattta agctctgtta caggcttgtc
     4801 aaaatgtttt aaaaaaagtt ctttgatttc taaatttctt ttcatttttt aattttagtt
     4861 aattagcttt aaaccaagtt tagatataat tgattttata tacattttat taaaaaggaa
     4921 acctaatgaa aaaattttct ttagtcgcag caactttgat tgcaggtgta gttttaaatg
     4981 taaatgcagc tacagtagct actgttaatg gcaagagcat tagcgataca gaagtaagtg
     5041 aattttttgc ccctatgctt agaggacagg attttaaaac tttgccagat aatcaaaaaa
     5101 aagctcttat tcagcaatat attatgcaag atttaatttt gcaagatgct aaaaaacaaa
     5161 atttagaaaa agacccttta tacacaaaag aacttgatcg tgcaaaagat gcaatacttg
     5221 ttaatgttta tcaagagaaa attttaaata ctattaaaat tgatgcggct aaagttaaag
     5281 ctttttatga tcaaaataaa gacaaatatg taaaacctgc aagagtgcaa gcaaaacata
     5341 tcttagtagc gacagaaaaa gaagctaagg atattattaa cgaacttaaa ggtttaaaag
     5401 gtaaagaact agatgctaaa tttagcgagc ttgctaaaga gaaatcaatt gatccaggtt
     5461 caaaaaacca aggtggtgag cttggttggt ttgatcaatc aactatggta aagcctttta
     5521 cagatgctgc tttcgcgctt aaaaatggta ctattactac aactccggta aaaacgaatt
     5581 ttggttatca tgtaatctta aaagaaaatt cgcaagctaa aggtcaaatc aaatttgatg
     5641 aagtaaaaca aggtattgaa aacggactta aatttgaaga atttaaaaaa gttatcaatc
     5701 aaaaaggcca agatctctta aatagtgcta aagtggaata taaataatgg gtgttttaga
     5761 cattgtaaaa gcaggggtga ttagcggaga tgagcttaat aaaatttatg actatgctaa
     5821 agcagagggt tttgctatcc ctgctgttaa tgttgtagga actgattcta ttaatgcagt
     5881 tttagaagct gcaaaaaaag ttaactctcc agttattatc cagttttcaa atggtggggc
     5941 aaaattttat gcagggaaaa attgtcctaa tggagaagtt ttaggtgcaa ttagtggggc
     6001 taaacatgta catttacttg ctaaagctta tggtgtacct gtgattttac acactgatca
     6061 tgctgcaaga aaacttttgc cttggattga tgggcttatt gaggcaaatg cacaatataa
     6121 aaaaacccat ggacaagctt tatttagttc tcatatgctt gatcttagcg aagaaagttt
     6181 agaagaaaat cttagcactt gtgaagttta tcttcaaaaa cttgatgctt taggtgtcgc
     6241 gcttgaaata gaattaggtt gtacaggtgg cgaagaagat ggagtggata atacaggtat
     6301 tgataattcc aagctttata cccaaccaga agatgtagct cttgcatatg aaagacttgg
     6361 aaaaattagt gataaatttt caatcgcagc aagctttgga aatgtacatg gagtttacaa
     6421 gccaggaaat gttagcttac aacctgaaat tttaaaaaat tcgcaaaaat ttgtaaaaga
     6481 taaatttgct ttaaatagcg ataagcctat aaattttgta tttcatggcg gtagcggtag
     6541 tgagctaaaa gatattaaaa atgcagtaag ctatggcgta attaagatga atattgacac
     6601 agatactcaa tgggcttttt gggatggggt gcgtgaatat gaacttaaaa atagggctta
     6661 tttgcaagga caaattggaa atccagaagg tgatgacaag ccaaataaaa aatactatga
     6721 tccgcgtgtt tggttaagaa gcggtgaaga aagcatgata aaacgtcttg aaatcgcttt
     6781 tgaagattta aactgtataa acaaaaacta agcattttaa aagcttagtt ttattttgtt
     6841 ttaaaaattt ttatcaaatt aagtagcaat ctttaaaata aaatttttaa tgaggtattg
     6901 gtttcatgga tattaaatca gatgaaattt cagaacttgt tttgcctgaa ggcaaagatg
     6961 caagaggttc tttggtttat tttaaaatta tttttattcc agcttttctt tatattttga
     7021 ttttattggg ttattttaat gtaattgact ttaaggtcga attacatacg gttattatga
     7081 caggtgtgat tttttttaca gcattgattt ttgctagaca tagtgctgag tatgcgtata
     7141 gtatttttga acaacaaaaa gatgaattta aacaggcttt aaaaagacat attatgaggc
     7201 attttcttgc catagggaaa gacacgaaat caaatgccaa ttttgatgac tttgcttata
     7261 catatattaa gggtgcaaga aatgagaatt ttgctagtat aggttcggca atttttccaa
     7321 tgatgggaat tttaggaact tttatcagta tagctttttc aatgccaaat tttagttcta
     7381 gtgatacagc cgctttagaa caagaaattg cagatttgtt aagtggagtg ggaactgctt
     7441 tttatgtttc aatttatgga atttttcttg cattatggtg gatgtttttt gaaaaatatg
     7501 gtaaaagcaa aatagatcgt ttgctaaatc gtcaaaaaaa cgctacaagt ggattttttt
     7561 ggacaaaaga agagcttgat caaagatatt taactgaaag tttgcaacat tttgaaaaaa
     7621 ttggagcaat ttttaaacaa gttagtaatg atgatttttt tgcagagctt gatcatgcta
     7681 ttgatagaaa atttggtatt ttccaagata tgctaaatgt agaagaaaag gctattagat
     7741 taagtagtga acatatcaaa caaaccatgg gtgagcttag taaagcacaa agagatcaac
     7801 gcgatcttgg aaagctttat agtgaaatgt taaatggtat aggtttgctc aatcaaaatt
     7861 taaaagaaat caatacaaga atgtcagaac aatataatcg cttgcttgat atcagtagtg
     7921 ataaaattca tcatcttgat aagacactaa gtgcattcga tgaaaaaata gagcgttttg
     7981 gtaaaaattt tgaactttat gaaaaagcaa tgttggaaag tcaagaaaag gtttttgagg
     8041 gatttaaagc aagcttgttt gaaggtatgc ataaatttaa agaagtatat gaagaagaaa
     8101 aaagtattga tgctaaaatc aaaatgatgg atgagcttaa aaaagaaatg aaagcacttg
     8161 atgaagaaac aagtcaaatg atgagcaagc tttctgggga tgaaaatcag aataaagaaa
     8221 atgaaaccaa acaaatagaa gatttttcag agtctaagac tgaagaaaat caagatgaaa
     8281 ttcaagcaga aatatctaag caagaaagca atgatgagct aaaaaatgaa gataaagaaa
     8341 ataaatgaaa aatgagtcaa aagaagatag caatttttgg atagcttatg ctgatttaat
     8401 ggcaggattg ctgtttgttt ttattttgct aataggtgct attgttgtaa aatatgtttt
     8461 aactcaaagt gatttaaaag aaatcaaaga taatctcaat aaacaagagg cacgcttaga
     8521 ggagagtaaa gaagagctta gaaataaaga agccatagtg tttaaactaa gttctgattt
     8581 aaacaatgct tctagtgctt taaatcttgc taattctcaa aaagcagaat tagaggctaa
     8641 tattacaaat tacaagcagt taagtaaaga tttaaactca actttagata ataaagataa
     8701 gcaaattttg attttactag gtcaactaga gaaaaaagat gaagagctta aaaatttaca
     8761 agaagatttt caaaaagcta aagaaaaggt gcaaaatctt ggtttgattc gtgaaaattt
     8821 aagcaaggaa ttacaaagta agcttgataa taatatcact atagatgaaa agacaggatc
     8881 tatttctttg cctgctgaag tactttttga taaagattct tatgtgttaa aaaatgaggc
     8941 aaaggcaagt ttgagaaaaa tcttaagcga atattttgat gctattcttg aagatccaaa
     9001 aattttttct aacattgaaa atatcattat tgaaggacat actgatagtg atggatctta
     9061 tatttataat ttagatttgt cgcaaaaaag agcttatgag gtgatgaatt ttatctatac
     9121 tttttataag agtgataagc ttcaaaagct tttaatggca agtggacgtt ctttttcaga
     9181 tcctgtgttt gtcaacggag ttgaagataa ggataagagt cgtcgcatag aaataaaatt
     9241 tagcattaaa aatgataatg ctttaaagga tgtagaaaaa ttctttgaat ttcattaaaa
     9301 caattagtcc tatacaaaaa atcaatttta acggatttga attttatatt aaaagagatg
     9361 atttattagg ggaaattaat ggaaataaag ctaggaaact tgctttttat atccatcaaa
     9421 gatatcctaa aaatcaatct tttgtaagtt atggaggaag ccaaagtaat gctttggcgg
     9481 cattaagtat ttttgctaaa caaagatcat ataagcttgt ttttgcttgt gaaaaaattt
     9541 ctacttttct taagaataat ccttgtggaa actatgcttt agctttagaa aatggtgttg
     9601 attttgtaga aaatatccat tctttatcct taaagcaatt tgctttgtct ttgtgtaaaa
     9661 aagatgatgt ttttatagaa caaggtatag ctaatttaga agctcaatat ggctatatgg
     9721 aacttgctca agaaattcaa atgcaaagtc aaagtttaaa gcttgatttt gatatttttt
     9781 taccttcggg tacaggcact tcggcagctt ttttggcaaa gtattctaaa tttaaagtat
     9841 ttacttgcgc ttgtgtaggt gatattaaat atcttaaaaa acaaatttta acattagatc
     9901 caagctatga tttttcaaat ttagaatttt taacaagtga taaaaaatat cactttgcta
     9961 agccgtataa agaattttat gagctttata tggatttaaa gttaaagtgc aatatagaat
    10021 ttgacttgtt gtatgatatt ttaggattaa gtatagcatt aaaacaagag tggaaaaaac
    10081 cattgcttta tatacatcaa ggtggaattt taggaaattc cactatgcta gagagatata
    10141 aatttaaaaa actagtttaa aattccatag ataaaaatga ttaaaataat caaaggcact
    10201 atatatttta cataataaaa ccaaattcca aaccatgaac ttttaagtgt attgttattg
    10261 ctaagttctt ttagactttc ttgtttacct aaaatccaac ctacataaat gcagcaaaaa
    10321 aatgcagtta aaataaacaa aatatttcca ctaatgaaat caaaactatc aaaaatgttt
    10381 tttcctttga tgataacaat atcacgccaa ggcccataag ttagaataca gggaagattg
    10441 ccaagtatga agataaaccc tagagttagg ttaatagaaa gatttttaga atatttaaat
    10501 ttttcttcta atacgctaat aataacttga taaattggca agcttgtggt taaagctgca
    10561 atcaagagta agacaaaaaa taaaatacac acaatagtgc caaaatggat atgagaaaat
    10621 gctataggta aagtttcaaa aaccaaagaa ggcccgctat ctggagcaag tcccgctgag
    10681 aaaagtgctg gaaaaatcat aaaaccagcc aaaacagcta tgatagtatt taaaacccct
    10741 gtataaatag cggtttttgc catattttca tttttattaa gatgagatga aagtgttatc
    10801 attaccccaa aacctaggga taaagcaaaa aagacttgtc ctaaaacatc gattaaaagt
    10861 tttggtgata aaattttact aaaatcaggt tcaagataaa atttaactcc agccatagct
    10921 ccatcaaggg ttaaattgcg tcctacaaca ataataagac agataaataa taaaggcatt
    10981 aaaaatttta cggatttttc tataccatct ataatgcctc tttttaaaat aatataatta
    11041 ataattacaa aaacagtggt aaaaatacca actcctaaag gattgaaggc tattttgtcg
    11101 ttaaaaaact gatgagtaaa ttctttgctt actacattgg caagactaaa attccctagg
    11161 gttaattccc aaatataaac taaaacccat cctccaagta ccatgtagta agccattatg
    11221 ccaaagcttc ctaaaagtcc catatatcca atactttgcc atttttgttt gaaagcatct
    11281 acgctatttg tcatcgcttt tctgcctatg acattttcaa ctaaaataac aggaatgcct
    11341 atgataatca tggctataca aaaaactaat acataagcac cgccaccatt ttctcctaca
    11401 agatagggaa aacgccaagt tgctccaaat cctatggttg ctccagcaac tgttagaata
    11461 taagttagtg tgctactcca tgtttgtctt tgcatgatta tcctttcgaa aaagaattat
    11521 tttacctaaa aataacttta aaaacttata agctatccat atagcttata tcgtaagtat
    11581 tttttaagcg tttgtgtatc gtttcgtgcc aattttgaga tatgagagag tttaattttt
    11641 ctaatttatc taataaattc ggattttgct taagaatttg atgcggggag taaaaaagtt
    11701 gattgagttc aaatacacta agtgaagtag aatttttttc taaaatttta atgttttcat
    11761 gctttcgtat ttgtccaact tgtaaaactt tataatacca tccactcaag cccgttttaa
    11821 aaatttcatg tgtaaaattt ggattattgt gaattttaga aatttttaca caaggttttc
    11881 taggttcgct tacttgcagt attgcatttg aaaattgatg tatatcacct atgcaaacat
    11941 tttgttcaca aagcccatcg atgctcaaat tttcacccat tgagccaaaa tttagctttt
    12001 tattaagaaa tctttcccat ataggatagt tttgacaaga gttggcaaaa atagccttat
    12061 ggtagcctcc atgatgaatt ttatcagcta tttgatcatc taaaacacct agaaaatcaa
    12121 tttgtgtttc ttctaggtaa gtatctttaa taaatgcgct ttggaaattt ttatagtttt
    12181 taattttccc tatttgcaaa ctttgaattt tcatggttct atttttttta ataaatcatc
    12241 agcactgata aaacccgtga tttttaattt ttcttttcca ttttcaaaga aaattaaaac
    12301 aggtgggcca aaaacattaa attctttcat ggttttaatt tgttcattat tattttcgct
    12361 tacatcaact ttgataagtt tgtaattttg cattttttgt atgattcttt catcgctaaa
    12421 ggttaattca tctaaaagtt tgcaattttc acaccaagat gcagtaaaat caagcattat
    12481 aggctttgta tttgtttgta tttcttgctt taattgttca aaattgttga tataatcata
    12541 gcttaaagca tgttttgagg cagatatagt attgaaattt aaaggattta agaaattttt
    12601 agccccaaaa agtcctccta ggaaaatact tagagaataa gctaaaataa gaattaaaat
    12661 acttttttta attttagaaa ttattgtaaa acttttttca aaaattccca taaaaacact
    12721 aaaaaataca cctaaaattc cataggcaat taaaatgtaa ttttcttcaa taattctaga
    12781 aagtatccaa atagccatag ccaacataac aaaaccaaag aaaattttta ctttttccat
    12841 ccaaaaacca ggtttaataa aacctaatcc taagcctatg aaaagcaaag gtatacccat
    12901 gccaaaactc atgataaaaa gtgcactacc acctaataaa gcattgcctg tattggctat
    12961 ataaattaaa gcacctgcta aaggagctgc tacgcaagga cctactatta aagcagataa
    13021 aaatcccatg atggctatac ctacaactcc cttccctttt tcgctttttt tatgtataaa
    13081 ggtttgaaat cttaatggca attcaaaacg aaaagctcca aacatagcaa aagcaaaagc
    13141 tatgaaaatt agagcaaaaa gaattaaaat aataggtttt tgtaaaattc cttgaatact
    13201 tgctcctaga aaacttgcta taactccagc aatagcatag gctaaagaca tgaaaaaaac
    13261 atagataaaa gagagaaaaa aactatattt ttttgaaaat ttagcattac tttttgctac
    13321 gataagagaa gataaaatcg gaatcatagg taaaatacaa ggtgttaagg agagtaaaag
    13381 tccatagcca aaaaaactta gcaaaatcca aaaaaagtta tctgttgcta aaaaatttgc
    13441 tatagagctt tcttcagatt caattttagt ttttttatct gttttttgag ctttgtaagg
    13501 ttttgaaatt tcaaaagcat cttttttaga aatgagatca aagtaccaag tttgaggatt
    13561 ataacacaag ccttgttcag aacagccttg aaattcgagt ttgattaaat ttgtggtatt
    13621 ttttgcaaag cgctctagta ataaatttgg caaagctaaa tttaattttt gataataaac
    13681 attttcatta cctcttgtag aactttgagg tagattaatc aaagaactta tatctttttc
    13741 gtttatatat aatttaagtt tattagaata aagataaata tcttttccaa gttcaatatc
    13801 aattgagata gagttattat aagagtttga ttttacatta aaagcttcat ttaaagataa
    13861 tatagaagca aaacataaac aaaaacttaa taaaataata ccaaaaatac gcataaattt
    13921 cctaaaaact tattttttcc tttattttta acttcaatta taatttatta tggtaaattt
    13981 actttaaata ctttataaag gtttgaaaat gcaagaaaat aattctccaa aagcgcaagc
    14041 ggttgttaaa aagaatgaaa tttatgtttc tgttaaaaga aagaaaagta caatagaata
    14101 tgaaaaagat ttaaagaatt tgcaaattga gcttttgaaa tttcaaaatc atgttaaagc
    14161 caagggttta aaggttctta tacttataga agggcgtgat gcagctggaa aaggtggggc
    14221 gattaaacgt ttgattgagc atttaaatcc gcgtggttgc cgcgttgtgg ctcttgaaaa
    14281 acctagtgat gtggaaaaaa cacagtggta ttttcagcgt tatatagcac atttgccctc
    14341 agccggtgag attgtgattt ttgacagatc ttggtataat cgtgcaggag tagaaccggt
    14401 tatgggtttt tgtacaccgc aacaacataa agatttttta agagaagtgc ctttgtttga
    14461 aaatatgatt tcaaatagtg atattatttt ttttaaattt tatttttcag tatcaaaaga
    14521 cgagcaaaaa aaacgttttg aaaaacgccg aagcgatcca cttaaacaat ataaattatc
    14581 tcctgtggat caaaaatcgc aagaattatg ggataaatat actttagcta aatactctat
    14641 gcttttagca tctaatactc caacttgtcc ttggactatt atttcttctg atgataagaa
    14701 aaaagcaaga ttaaatttat tgcgttttat actttctaag gtagaatatc caaataaaaa
    14761 aactggagat ttttccaaaa ttgatgcaaa attagtgcat agtggagaag aagaaatacg
    14821 aaaaatggag gcgaatttgg aaaaacttga cagtaaaaaa gcagatgaga aaataaaaga
    14881 tttagattaa ggaaaagaat gcaaaagctg gttgaaaatt tagcactaaa gtactatgat
    14941 aaagtagttg atttaagaca tcaaattcat atgcatcctg agcttgaatt tgaagaagaa
    15001 aatacagccc atttagtgtg taaaatttta gatgagtttg gcattaaata tcaaaaaaat
    15061 attgcaaaaa caggaatttt agctattata gaaggaaaaa agaagagtca gaaaaaacca
    15121 aaatgtgttc ttttaagagc ggatatggat gctttgcctg tgcaagaaaa aactaatcta
    15181 agctatgctt caaaaattga tggtaagatg catgcatgtg gacatgatgg acatacagca
    15241 gggcttttgg gagctgcttt gatattaaat gagcttaaag atgaattttg tggcacgatt
    15301 aaatttatgt ttcagcccgc agaagaggga agcggtggag ctaaacctat gatagaatca
    15361 ggtgtattgg aaaatcctta tgttgatgca gtttttggtt gtcatttatg ggggcctttg
    15421 cttgaaaata ctgctcaaat tgtaagtggt gaaatgatgg ctggaacgga tatttttgat
    15481 ttggaattta ttggcagagg agggcatgga gctcatccgc acacttgtat agatcctata
    15541 attatgacaa cgcaatttgt aaataatata caaagtgtta tttctagacg tttagcccct
    15601 tatgaagcag gggtgattac cgtaggtcaa atttgtgcag gaactactta taatgttatt
    15661 cctacaaatg cttatttaaa aggaactgtg cgctttttaa atgataaaac gcaagatatt
    15721 ttaaaaagtt ctttagaaga agtggctgct gctacagcaa aatccaatgg cggagattat
    15781 aagcttaaat atactaaaga atttcctcca ttgattaatg atgaaaaagc tgttttaata
    15841 gcaagaaaag cttttgcaaa ggtcttagga gaagaaaata tcattgtttc ttctaaacct
    15901 gacatggggg ctgaagattt tgctttttta acacgagaaa gaatgggggc ttatgtattt
    15961 gttggaattt caaaggattt aaatcatcca gctttgcatc atagttctac tttttgttgg
    16021 gatgatgaaa atttaaaagt tttaatgcag ggtgatgtga tgatggcttt agaattttta
    16081 aatttataaa atagaattaa aaattcacaa aaaattcaca aaaaatgagt aaaatttaat
    16141 cttgattttt ctttaggatt tgttattatg aaaaagaaga ttgttttaat cattttaatt
    16201 gcaatacttg gaagtgttgg ggcttatttt atttttttta ataatgatga aaaaatcagc
    16261 tatttaactc aaaaaataca aaaaaaagat atatctcaaa ccatagaggc agtaggaaag
    16321 gtatatgcca aagatcaagt cgatgtgggt gctcaagtta gtggacaaat tataaaactt
    16381 tatgttgatg tgggaactca tgtaaagcaa ggtgatttga tcgctcaaat tgataaagat
    16441 aaacaacaaa acgatttaga tattacaaaa gctcagcttg aaagtgctaa ggctaattta
    16501 gagagtaaaa aagttgccct tgagattgcg aataagcaat atcaaagaga gcaaaaactt
    16561 tatgcagcta aagcaagttc tcttgaaaat ttagaaactc aaaaaaataa ttattatact
    16621 ttaaaagcca atgttgcaga gcttaatgct caagtagttc agcttgaaat cactcttaaa
    16681 aatgcacaaa aagatttagg ttatacaacc attactgctc ctatggatgg tgttgtgatt
    16741 aatgtagctg tagatgaagg acaaacagtt aatgctaatc aaaacactcc tactatagtc
    16801 cgtatagcta atttagacga aatggaagta agaatggaaa tagcagaggc tgatgtgagt
    16861 aagataaaag taggaacaga gcttgatttt tctttgctta atgatcctca aaaaacttat
    16921 catgctaaga ttgcaagtat agatccagct gatactgaag tgagtgattc tagtacaagc
    16981 tcaagctcat caagttcgag ttcttcaagc tcaaactcat caaatgctat ttattattac
    17041 gcaaaatttt atgtagccaa taaagatgat tttttgcgta ttggtatgag tatacaaaat
    17101 gaaattgtcg tagcaagtgc aaaggctgtt ttagcagtgc caacttatgc aattaaaagc
    17161 gatccaaaag gctattatgt tgaaattttg gaaaatcaaa aagctgttaa aaaatatgtc
    17221 aaacttggca ttaaagattc tatcaatact caaattttag aaggtgtaaa tgaagatgaa
    17281 gaattgatag taagctcaag tgctgatggt ttagctccta aaatgaagtt gagattttaa
    17341 tgatttttct taaaaatatt tgcaaaaata taggcgaaaa tgccatttta aaaaatgtaa
    17401 gtttaagtat agaaaaaggt gaatttgttg ctattatagg acaaagtgga agtggtaaaa
    17461 cttcactttt gaatatcata ggaacattag atacaccaag tagtggaact tatgtttttg
    17521 atgagtatga agtcactaaa cttaataatg atgaaaaagc aagattaagg cgtgaaaaaa
    17581 taggctttat atttcaaaga tacaatcttt taagcttgct gagtgctaaa gaaaatgttt
    17641 ctttacctgc agtttatgcg ggaaaaaatt tacaagaaag aagtcaaaat gctaaaaaac
    17701 tcttaaatga tttagaatta gctcacaagt tagattttaa gccaaacgaa ttaagcggag
    17761 ggcagcaaca acgcgtttct atagcaagag ctttaatcaa tggcggagag cttattttgg
    17821 ctgatgagcc aacgggagct ttggatagta aaagcggtat tatggtgctt gaaattttac
    17881 aaaaacttaa cgagcaaggt catactatag tcttagtaac tcacgatcca aaaattgcag
    17941 cacaagctaa aagggttata gagattaaag atggagaaat tttaagcgat actaaaaagg
    18001 aaaaagctca agaaaaactt attttaaaaa caatgcccaa agagaaaaaa acacttactt
    18061 tgcttaaaaa tcaagccttt gaatgtttta agatagctta ttcttccata cttgcacaca
    18121 aacttcgttc tattttaact atgcttggaa tcatcatagg tattgcttct gtagtttgtg
    18181 ttgtagcttt aggattaggc tctcaagcta aagtgcttga gtctattgca agacttggga
    18241 caaatactat taaaattcgc cctggaaaag gatttgggga tttgcgttcg ggtaaaacaa
    18301 ggcttaattt tagtgattta gaaacattaa gatctttaga atatttagaa gcagttgatg
    18361 ctcattcaaa tacttcagga gtggcaactt ataccaatat ttctttaagc gcaagagctg
    18421 aaggagtagg ggtaaataat tttgctatag aaggtttaag gatagatgcg ggaagaattt
    18481 taaataatga tgatgtaaaa aatagtacca atgttgctgt attggatttt aatgctaaaa
    18541 aaaatctttt tcctgatgaa aaaagtgaaa atattttagg tcgtgtggtg ctttttaatt
    18601 ctcaaccttt taagattata ggagttttgc aaaaagatac agacaagcct atagaagata
    18661 atgtagtacg tctttatata ccctatacaa cactgatgaa taagcttaca ggagatagaa
    18721 atttgcgtga aatcatagtt aaggttaaag atgatgtgag ttcaactttg gctgaaaatg
    18781 ctattataag aattttagaa attaaacgcg gacaaaagga tttttttact tttaattctg
    18841 acacttttaa gcaagctatt acagcaaata aacgcactac aaccatattt accgcttgtg
    18901 tggctgtgat tgctttgatt gttgggggta taggagtgat gaatatcatg cttgtttctg
    18961 taagtgaaag aacaagagaa ataggcatac gcatggctat aggggctaga agagaagata
    19021 ttatgatgca gtttttaatc gaagcggtta tgatttgtac tataggggcg attttaggtg
    19081 tgattttatc gatttttgtt atttttgctt ttaatacttt aagtacggat tttcctatga
    19141 ttttaaatgc ctattctgtg cttttgggac ttttaagttc tatgtttatc ggtgtggttt
    19201 ttggtttttt ccctgcaaga aatgcagcaa atttaaatcc tattagtgca ttatcaaagg
    19261 aataaaatga aaataatact tagcattttt ttagcatttt tcttgagcgc ttgtggtgta
    19321 aaacttagct tgcctaaaga agttgattta actcaagaac aaatgaaaga tttaaatctt
    19381 acttatgatt ggtatagatc ttatgataat gcaaaattaa atgaatttct aaattttgtt
    19441 ttattgaata atagtgatat taatattgct agaaaaactt tgctttcggc tttggctaga
    19501 gctgatttga ttgattatga tttatatccg actttaagtg gaaatttggg ttttggtgcg
    19561 gataaagatt taaattcagg caaacaaagt aaaaatttca ataattcttt aaatttaagc
    19621 tatgagcttg atatttatgg caaattaaga gatagtgcaa gtgcgagtga atttagtgca
    19681 aaagcaagtg cttatgatct tgaaaattta aaaataagta tgatcaatac agctttaaat
    19741 gatgtgtttg agctggctta ttttaacgat gtagataaat tgcttcgagc ttatctttca
    19801 aatttagaac aaatggaaga gctttataat tataaataca agcttggaaa aatagaagaa
    19861 ttagatcttt taaacataga acaaagctta ttaagagcta aacaaaattt attaagcaat
    19921 gatcaaaatc gtaatttact cataaaaaat ttacaagatt tattggcaag gcaagaaggt
    19981 tttgcttata tagagtattt taaaacttta tctttaaatg attttaaaac cttaagtcct
    20041 gattttaata tacctttaaa agctttagcg taccgtgcag atgtgagatc taaactcaat
    20101 agcttaaaat cagcctttaa ggattattct tccatgcaaa aatctatttt gcctagtatt
    20161 tctttaggtg gagcattaag cggaagtgat aaaaaaatcg atgatagttt taaatttgaa
    20221 attttaagtg gcaatgttaa gatttcttta cctttcttag attatggtag ggtaaagcaa
    20281 aatatcaaaa tttcacaatt tacttatgag caacttttaa tttcttatga gcaagccttg
    20341 caaagtgcga tgaatgaatt tgcattgaat tataaagatt atcaaagcga caccttgctt
    20401 ttgcaaaatt tgcaaaatat taacattaaa caagagctta tcactaaggc gtattatgaa
    20461 aaatatattt taggaaaaag tgaattaaaa gattatttgg atgcaaacaa tactttaaat
    20521 tctacccagc aagaattttt aagagctaga tttaatcttt taaaaaccat taattcttac
    20581 tatcaaatca cagctttaag ttttaatgat gaaaacttag aatttcctaa gtattaaatt
    20641 taataatcaa tgatattttt taaatcctcg agtaactttt tagccatcag ctcatagcct
    20701 tttatagtaa gatgtacatc attgagcgaa agcttttgtt ctatccattt gttttttccc
    20761 ccactatctt gcataaactg atgtatatca aaaataagag ttttttcttc tttagcaact
    20821 tcatataatg ctttgcgtat ggtaaaaaaa tcaggagcaa gcttgtagtt tttaccttgt
    20881 ttttgaacta cagttggtgg agagattagc atgataacag cgtttttatt gtaagttttt
    20941 aaaatactaa tccatttttt taaattattt ttgaattttt gtttttcaaa ccctttaaag
    21001 agtgcatcat tagaaccata ggcaagaata attaaatcat tgtgtaaaag tcctagttct
    21061 ttttttacaa ctgtttgatt ccaagagagc cataaatcac ttttggcacc attgattgca
    21121 atggtatcta agaaaacatt attatcttta tttgtgatga aatatcctcc tagttcagca
    21181 tccttttgta aggctgaaat ttgcaaagga agatcaagtt ctagttcttt ataagaccat
    21241 ttgttaattt gtgtagttct taactcatag ctttgatttt ttgcatcttt gatgctaaaa
    21301 gcattggtat tttgcttggc tttaaataaa aatcctattt tgaaattttt tttatctagg
    21361 gttgtatcaa ggttgatttt tgcgccttta gtttttgctt tggctattat cccacctagt
    21421 ggaaaattat gtccagcatt agcaggattt cttgagttta aaatttcaaa gtttttataa
    21481 gaataaacaa gattaagatt ttgttgatat ttaggctgta aaggataggc aaaacctata
    21541 gagttagaac ggattaaata tcctcttatg acacgcggaa agaaatcagc cgccatatga
    21601 gaatccccat aaattctaat tcctatgttt tgattttttt ctaatttttt ttctagattt
    21661 ttaagatctt tttttaatac ataacttgtt aaagcagagt gatttttgtt ttgattgagt
    21721 atggaatcta ttgtgtcatt tgtatttaaa ttttgtgcat aagagctagt aaaaataata
    21781 aaaaacaata agataatttt aaatttattt actagcattt tcttccttaa gttttatgtg
    21841 ttctaataaa agtttagaca tttctcttgc gccacttgga gtaaaatgaa ccccatcatc
    21901 tgttcttact tttatacttc tattgttttc atcttttata taagctgagt attcatcatt
    21961 gacactaaaa aatagcttag tgttgataaa aatttcttta tttttaagaa tttcatcgct
    22021 gtaaatttta ttgagcactt gtattttttt gttcaaatct tcttttttta caggagggat
    22081 ttcaaaccaa aaaactttgg ctttatgttt tttagcgatt ttaatgattt catctacacg
    22141 acttgtgtaa atatctatcc aagaagggga gccaaaacga tggtaatttc ctcctttttt
    22201 aatatcccaa ggatcattag cgccaagaag aacaacaaga tatttaatat ttgagttttt
    22261 aataaaagct tcattggtgg cttttgacca gtcaaaatag gatttataag aaaggcctgt
    22321 attttgtttg ctaagatcgg ttaccttaag atttaaattt cttaaatctc tatttaaggc
    22381 tattgcaaca ccttgcatta aagaatctcc gataaataaa aactcatctc cattttgtag
    22441 ttctaatttg gtattgtcga taaaactaat atttgcatct cggattaagg ttggatttgt
    22501 ttctttatga gaagtgtttt catcattttc taaagtgttt agaactttat ctattttact
    22561 taagttttca tctattgatt tattttcttg atttgtagtt tcttcattag tttgaggcaa
    22621 gggttcgttg cttaaaattg cacgaatttg ttctaattta attttgaagc cattggcttc
    22681 ttttaaaaga tcattatgag gatagaatgc aaagtgatat ttttgttcta tataagagct
    22741 aatgctctga ttcataacta caacaaccaa gccaagcact ataatcaaaa taaagaaaaa
    22801 tctaaccaca ctcatctaaa aactcgaata aataaaatca ggaattccat ctggcataaa
    22861 agcaaaaacc aaaagtaaaa taaaagctat gataaaaggt tttagtaaaa atggagtaag
    22921 atttaaaatc ttaatgcaat attctttaaa attaataaat aaaggataga tcataaaaag
    22981 aaccccaaaa gcaaccaaca tatagatatc gttataagat ggaatttgga aggaattata
    23041 ataacaagct ttaaaatatt ctattgcatc ttctagattt ttgctatagt aaaagaaaat
    23101 ccaagtaaaa catacaaatt gaaaggttaa aaatcttcct aaagctggaa ttttttgtaa
    23161 actaaatttg cttaaagcta gcaaatgtat aaaaactatg ccaataccat gcaataaacc
    23221 ccaaacaata aaagcaagtg tattgccatg ccacatacct gaaagtataa aagcgatgag
    23281 tatgttaact atagtgcgtg gcattccttt tctattgccc cctaaaggta tatagatata
    23341 atctcttata aaggttgaaa gactgatatg ccatctagcc caaaaatctt ttaggttttt
    23401 tgcaagataa ggcatgttaa agttagatgg aagggtaaaa cctaacatta aagcaaaagc
    23461 acaaactaaa tcaacatatc cgctaaaatc gcagtatatt tgaatcgcat aggcgtaaat
    23521 tgcgcttaaa agttgtatga aattataaga ttgtggaaag tctaaaatac ttttagcata
    23581 aattccaagg taattggcta ttaaaacttt tttaactata ccaaaaacaa gcaagatgat
    23641 gattaaattt gcatgtttaa attcgcgttt ttgataggcc tgctcaaaga aaaaagaact
    23701 tcgcataata ggccctgaaa gtagtgttgg aaaaaatgat aagaaggttg ctaaatttaa
    23761 aaaactttct aaacggcgtt tttgataaac ttctacaaga taggtgatag aagtaaaggt
    23821 ataaaaacta attcctattg gtaatactaa atcaatattt aaaaattcta aaccgaaaaa
    23881 atttaatatc tcatcaacac ttcctttgat gctaggaaag tatttaaaaa aacataaatt
    23941 taaaataata aaagccatgc aagtagcaaa aatataacgc ttgcgacgca caaaaattag
    24001 caaggcaaaa tagtgtataa aaaaggtata tataaataaa actaaggcga aataaggatt
    24061 gattaaaata taaataatat aagagaaaat taaaattaaa atattttgta ttttgtaatc
    24121 atttttaaaa gtccaataaa tagcaaaaaa agctatcatt aaaatactaa attctagaga
    24181 aaaataagtc ataccttcaa tccaaagcga gatttgccca tagtagggca aagattattt
    24241 ttttctgctt aatgcaatat ttttgatgta ttgatcagct aaataaagtc catttccgtg
    24301 ttctccgatt aacttaatct tgtcaactat accgcggaaa agtgcttctt cttcgtgttg
    24361 ttcgcttaca taccactgta agaaattaaa agtagaatag tctttatgtg ttagcatgtg
    24421 ttcaactaaa gtattgattg attttgtgat aaattgctca tgttcatagg ttttttcaaa
    24481 aacatcaagt aaagatttga aattttgttc aggctgtttt acttcttgaa gctctacatg
    24541 agaatctgtt tcattaagat aagtgataag ctttttagca tgatcgcttt cttcgcttgc
    24601 atgtgcaaac aagaaggctc cagctccatc aagactgttt tcatagcacc aagaactcat
    24661 actaagatat aagtttgccg catacatttc tttgtttatt tgttcattga gtaattttac
    24721 aacttcttta gaaagcattc ttatctcctt attaaaattt aaaatgtttt ataatgatat
    24781 attatttttt taaaaacaag ctaaattttt tgatagttaa aaattatatt taagaaaaat
    24841 acaaaataaa aaatgtttcc aaaatgtttc caagtttttt taaacttcca ttactttttt
    24901 aaagttaagg agaaaaaatg aaaaaaattc tatctttaag tgtggcaagt cttgcacttt
    24961 gtggtgcttt aaatgcagca gatttaaaaa tcgcaggttc atcgactgtg tatcctttta
    25021 cttcttttgt agctgaagaa tatgcttcga ttaaaaatac aaaaacccct atagtagaga
    25081 gcttgggaac agggggtgga tttaaggtat tttgtgaagg aactactgat atttctaatg
    25141 cttcaagacc tatgaaatta agcgaatttg aaacttgcaa aaaagcaggg ataactgata
    25201 tagtagggat gatgataggt tatgatggta tagttttagc tcaaaataaa accaatgctc
    25261 cattaaatat cacaaaaaaa gaacttttct tagcattagc aaaagaaatt ccacaaaatg
    25321 gaaaacttat accaaatcct tatacaaact ggaatcaaat caataaaaat ttaccaaatc
    25381 gtaaaattag tgtttatggt ccaccatcaa gttcaggaac aagagatact atagaagagc
    25441 ttgtaatgag tgatgtgtct aaaaaaattc ctgagtataa aggcgagtat aaaaccatac
    25501 gccaagatgg tgcttatatc ccaagtggtg aaaatgataa tctaatcgtt tccaaactta
    25561 ctattgataa ggatgctttt ggaatttttg gttatagctt tttagtgagc aattcagaca
    25621 aaatcaatgc tgctaatatc gatggtgtta cgccaagcga agaaagtatc gcagatgaaa
    25681 aatacgaact tgcaagaagt ttgtttattt atatcaatgc taagaaaaat ccaaaagaag
    25741 cctttgattt tgcaaaaatt tatatgagtg atgatttggc aaaaagtggt ggagagcttg
    25801 aaaaaatagg acttgttcct ttaagtgatg ataaattaaa agcttctcaa aaacatgtag
    25861 aagatagaaa aattttaaat gatgagcttg taaaagctgg aaaagttttt taaggaaaaa
    25921 ctttgttaaa agaaaaaata atcaaatttg cacttttttt atgtgctttt gtaagcgtga
    25981 tagtaagttt tgctatcatg cttacaattt taattgaagc tttaaaattc tttcaaaaag
    26041 aaagcgttat taccttttta ttctcaagtc agtgggcagc tgatgcagct tttatgaatg
    26101 cagatggcac gagcaaacaa ggtgtttttg gagcgctatc gcttttttgg ggaacttttt
    26161 atatttcatt gattgctatg ctaacggctt tacctttagg ggttatgtgt gctatatatt
    26221 taggtgtttt tgctggcaaa aaatctaaaa attacttaaa acctatttta gaaatcattg
    26281 cagggattcc tactgttgtt tttggatttt ttgcggctat agttgtagcg ccttttatag
    26341 tgtggttttt ttctttattt ggcatacaag caagctttca aagtgcttta ggcgcaggtt
    26401 ttatcatggg gatcatgata gtacctatag tggcttcgtt atctcaagat tgcattgaag
    26461 cagtaagcga gaaaaggatt aatggcgctt atgctttagg tatgacaaaa aaagaagtgg
    26521 tttttgccgt gattttacct gaggctattc ctggtatagt tgcagcttgt cttttaggac
    26581 tttcaagagc cttaggcgaa actatgatag tggtgatggc agcttctttg cgtccaaatt
    26641 taactttaaa ttttttagaa gatatgacaa cggtaacggt aaaaatcgta gaagctttaa
    26701 gtggagatca agcttttgat agttctttgg ctttaagtgc tttttcttta ggtttggtgc
    26761 tttttgtcat cactttaatc atcaatatgt ttagcgttta tcttatcaat cgctttcaca
    26821 aaaggaaaaa tttatgaaaa aactttttaa aaaaagacaa aaagcttcaa agtcttttaa
    26881 aagactttgt aaaatggggc tttatattaa tttaattttt ctttgtatct ttttaggaag
    26941 tgtggcttat cttggatttc ctgcttttaa gcaaacctat atttttgtag aggctaatag
    27001 aaattctcct gcttatgatc ttttatctcg tgctgagcaa agaaagataa gaacagggca
    27061 aatcactgaa aaatcttggc ttttggcaaa ttcagaagta gatcaatata tgaagcaaaa
    27121 atataatcgc cttagtgaaa aacaaagaac tttagtcgat gatcttatgc aaaaaggcga
    27181 gatagagctt aaatttaata gcaatttctt tttaaatggg gactcaaaat ctcctgaaaa
    27241 ttcaggaatt ttatcttcag ttgtagggac tttgcttgtt atgcttgttt gtatggttgt
    27301 gagtgttcct ataggcgttg cagcggcaat ttacttagaa gaatttgcgc cacaaaatat
    27361 ccttacacat tttatagaag tgtgtattaa caaccttgca agtattccaa gtatcttgtt
    27421 tggactttta ggacttggag tgtttatcaa tctttttgga atgcctcgct caagtgcttt
    27481 agtgggtggg cttactttgg cgatcatgag tttacctatt atcattgttt caactaaggc
    27541 agctttaaaa agtgtggaca ttaacatgaa aaatgccgct tatgccttag gtatgactaa
    27601 ggttcaaatg gtaaaaggca ttatgctacc tttagctatg cctatgattt taacaggttc
    27661 tattttgact ttagcagggg ctataggcga gacagcacct ttgatgatta tcggtatgat
    27721 agcatttatc cctgatgtag ctagttcgat ttttgattca actagcgttt tgcctactca
    27781 aatttactca tggtcggcta tgccagagcg tgcattttta gaaagaaccg cagcgggtat
    27841 tattgtgctt ttaggacttt tagtcgtatt aaatcttagt gcaatattat taagaaaata
    27901 ttttcaagga aaattaaagt gatagcaaaa acaacaaatt taaatttatt ttatggaaaa
    27961 aaacaagctt tatttgatat caatatgcaa atagaacaaa acaaaattac tgcactcatc
    28021 ggtgcttcag gatgtggtaa atccactttt ttgcgctgtt ttaatagaat gaatgataaa
    28081 attgcaaaaa tcgatggttt agtggaaatt gaaggaaaag atgttaaaaa tcaagatgta
    28141 gtagccttgc gtaaaaatgt aggcatggtt tttcaacaac ctaatgtttt tgtaaaaagc
    28201 atttatgaaa acatctctta tgcaccaaaa cttcatggta tgattaaaaa caaagatgaa
    28261 gaagaagctt tggtggtgga ttgcttgcaa aaagtggggc tttttgaaga ggttaaagat
    28321 aaattaaagc aaaatgccct agctctttca ggcggacaac aacaacgcct ttgtatcgca
    28381 agagctttag cgatcaaacc taaacttttg cttttagatg agccaacttc tgcacttgat
    28441 cctataagtt caggcgtgat tgaagagctt ttgaaagaat taagccataa tctttctatg
    28501 atcatggtta cgcataatat gcaacaaggc aaacgcgtag ctgattatac agcatttttt
    28561 cacctaggtg agcttataga atttggagaa agcaaggaat tttttgaaaa tccaaaacaa
    28621 gaaaaaacca aggcttactt aagcggtgct tttgggtgag atttattttt tggaaatttg
    28681 atgatataat taattaaaaa tttccaaaaa aaaggtttaa tatgattata aaccaaattt
    28741 attctataga ttcttgtgat gatgtagaat taaatatcaa aaggggaagt aaattagaat
    28801 ttagattgac ttatgatgat agtaaagaaa tagaagctat tgtttgtatt attccaggtg
    28861 gtgctgaaga tatgaatagt tatatttata ttgatgatta tttgactaga aattataaag
    28921 ttgctgttat taatattaac tatcattgta taggaaatag acctcatttg ggttctagtt
    28981 tttatttgga tgatatagat aaattcattt tagatactag tttaaaggct ataaatt
//
LOCUS       DARGEM010000006        28606 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.006, whole genome shotgun sequence.
ACCESSION   DARGEM010000006 DARGEM010000000
VERSION     DARGEM010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.006"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..375)
                     /locus_tag="SFZ78_000208"
     CDS             complement(<1..375)
                     /locus_tag="SFZ78_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8211121.1"
                     /translation="MADAHENEQRKGFWEFLQALKKGKISTPQLILMGDIFDLLIGEI
                     SATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQPIKLNLHTS
                     KGNNLVLNNAFIKLAHGDIFLPP"
     gene            complement(412..897)
                     /gene="greA"
                     /locus_tag="SFZ78_000209"
     CDS             complement(412..897)
                     /gene="greA"
                     /locus_tag="SFZ78_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG8211122.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(909..2003)
                     /locus_tag="SFZ78_000210"
     CDS             complement(909..2003)
                     /locus_tag="SFZ78_000210"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG8211123.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDTVLCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            complement(2100..2852)
                     /gene="peb3"
                     /locus_tag="SFZ78_000211"
     CDS             complement(2100..2852)
                     /gene="peb3"
                     /locus_tag="SFZ78_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG8211124.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVTFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(2994..4363)
                     /locus_tag="SFZ78_000212"
                     /pseudo
     CDS             complement(2994..4363)
                     /locus_tag="SFZ78_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            4543..5319
                     /gene="surE"
                     /locus_tag="SFZ78_000213"
     CDS             4543..5319
                     /gene="surE"
                     /locus_tag="SFZ78_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG8211125.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            5309..5962
                     /locus_tag="SFZ78_000214"
     CDS             5309..5962
                     /locus_tag="SFZ78_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEG8211126.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFD
                     LSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR"
     gene            complement(6037..6417)
                     /locus_tag="SFZ78_000215"
     CDS             complement(6037..6417)
                     /locus_tag="SFZ78_000215"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG8211127.1"
                     /translation="MNITLLKSKIHRANITEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(6414..7262)
                     /locus_tag="SFZ78_000216"
     CDS             complement(6414..7262)
                     /locus_tag="SFZ78_000216"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG8211128.1"
                     /translation="MEVITSIKEAKQIVKNWKSHNLSIGYVPTMGFLHDGHLSLVKNA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDAAQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLAKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSEEERKASLAISQSIFLAEKLVQEGEKD
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIKNIADNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(7273..8097)
                     /gene="panB"
                     /locus_tag="SFZ78_000217"
     CDS             complement(7273..8097)
                     /gene="panB"
                     /locus_tag="SFZ78_000217"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG8211129.1"
                     /translation="MRKSILSFLEKKGKNEKITMVSAYDYHSAKILDNCDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSEEHSFDYLDDELLDKLY"
     gene            complement(8251..9141)
                     /locus_tag="SFZ78_000218"
     CDS             complement(8251..9141)
                     /locus_tag="SFZ78_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8211130.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTCLKANEITAIFGESGAGKTTL
                     LKIIAGLIKPEFGRIEVGDELWLDTQKNINLAIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKVEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEIKKSDILMIFTLLLNQDIVKITLSEEEFLRTYKNVKIGDT
                     LLLSIKAFNPIIVGKLDKQK"
     gene            complement(9151..9819)
                     /gene="modB"
                     /locus_tag="SFZ78_000219"
     CDS             complement(9151..9819)
                     /gene="modB"
                     /locus_tag="SFZ78_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8211131.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVKFPFKSL
                     VQTFVALPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLVFASLIFSL
                     PFMVNPLQSAFSSINQNLLDASYALGKGKIYTLFRVILPNSKVGIFSACAMSFAHTIG
                     EFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFAILLSLYFVNK
                     KIAL"
     gene            complement(9812..10213)
                     /locus_tag="SFZ78_000220"
     CDS             complement(9812..10213)
                     /locus_tag="SFZ78_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8211132.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEHIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGFALPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIA
                     KEKALELKLEEGQEWLCFVKENDIILKAIYG"
     gene            complement(10210..10959)
                     /gene="modA"
                     /locus_tag="SFZ78_000221"
     CDS             complement(10210..10959)
                     /gene="modA"
                     /locus_tag="SFZ78_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8211133.1"
                     /translation="MKKLVLIFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLKLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITRY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            complement(11013..11699)
                     /gene="bioC"
                     /locus_tag="SFZ78_000222"
     CDS             complement(11013..11699)
                     /gene="bioC"
                     /locus_tag="SFZ78_000222"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEG8211134.1"
                     /translation="MNFLKAKDYQKHAKVQDLMGLKLCEILKNLEISHFKKVFEFGCG
                     RGEFSDKLSKIITFDEYLKNDILDYPDNLNVEIFDMNTLATQILSKQKFDLITSNASL
                     QWLDLKQVLPTLANMLNEKGILLLSTFGKMNLKEIKQSTGLGLKYFSTKELEQIFKPY
                     FSDIKITEEIVNLEFQNALEVFKHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHP
                     IFILCKKDTK"
     gene            complement(11696..12307)
                     /locus_tag="SFZ78_000223"
     CDS             complement(11696..12307)
                     /locus_tag="SFZ78_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG8211135.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLKSFSKITLIAFSMGVCVASRVLKDIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERKNEAKNFIFKDEKDLKTELEKLFEFASKECNENFIW
                     DKIYSSNNDEIFPQNALKNTFSKLIFLNEPHFAFFHFKTWDEI"
     gene            complement(12304..13446)
                     /locus_tag="SFZ78_000224"
     CDS             complement(12304..13446)
                     /locus_tag="SFZ78_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG8211136.1"
                     /translation="MSLENILEALEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSSCKSLKDEFLDNVKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALVSIPNTLFLADKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACIICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGKNQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVIELL"
     gene            13513..14796
                     /locus_tag="SFZ78_000225"
     CDS             13513..14796
                     /locus_tag="SFZ78_000225"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG8211137.1"
                     /translation="MQNQILKNLDLEHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKPLLLECLSTPVPQSKDYTQELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHQFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYILESLEQIFKEF"
     gene            complement(14783..15388)
                     /locus_tag="SFZ78_000226"
     CDS             complement(14783..15388)
                     /locus_tag="SFZ78_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG8211138.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(15398..15712)
                     /locus_tag="SFZ78_000227"
     CDS             complement(15398..15712)
                     /locus_tag="SFZ78_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8211139.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(15715..16053)
                     /locus_tag="SFZ78_000228"
     CDS             complement(15715..16053)
                     /locus_tag="SFZ78_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8211140.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            16187..16723
                     /locus_tag="SFZ78_000229"
     CDS             16187..16723
                     /locus_tag="SFZ78_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG8211141.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            16720..17265
                     /locus_tag="SFZ78_000230"
     CDS             16720..17265
                     /locus_tag="SFZ78_000230"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG8211142.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSIYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            17267..18325
                     /locus_tag="SFZ78_000231"
     CDS             17267..18325
                     /locus_tag="SFZ78_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8211143.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAIVAFVAFVATLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            18369..19577
                     /gene="lysA"
                     /locus_tag="SFZ78_000232"
     CDS             18369..19577
                     /gene="lysA"
                     /locus_tag="SFZ78_000232"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG8211144.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYKKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPGTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            19579..20346
                     /locus_tag="SFZ78_000233"
     CDS             19579..20346
                     /locus_tag="SFZ78_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG8211145.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFIKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            20334..21407
                     /gene="pheA"
                     /locus_tag="SFZ78_000234"
     CDS             20334..21407
                     /gene="pheA"
                     /locus_tag="SFZ78_000234"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG8211146.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            21397..22491
                     /locus_tag="SFZ78_000235"
     CDS             21397..22491
                     /locus_tag="SFZ78_000235"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG8211147.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGAP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKLCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            22543..24225
                     /gene="fliF"
                     /locus_tag="SFZ78_000236"
     CDS             22543..24225
                     /gene="fliF"
                     /locus_tag="SFZ78_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG8211148.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            24225..25253
                     /gene="fliG"
                     /locus_tag="SFZ78_000237"
     CDS             24225..25253
                     /gene="fliG"
                     /locus_tag="SFZ78_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG8211149.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            25261..26091
                     /gene="fliH"
                     /locus_tag="SFZ78_000238"
     CDS             25261..26091
                     /gene="fliH"
                     /locus_tag="SFZ78_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG8211150.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            26084..27931
                     /locus_tag="SFZ78_000239"
     CDS             26084..27931
                     /locus_tag="SFZ78_000239"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG8211151.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHTQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKFYH"
     gene            28017..28427
                     /gene="perR"
                     /locus_tag="SFZ78_000240"
     CDS             28017..28427
                     /gene="perR"
                     /locus_tag="SFZ78_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG8211152.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT         9950 a         4188 c         4772 g         9696 t
ORIGIN      
        1 aggtggtaaa aaaatatctc cgtgagctaa ttttataaaa gcattattta aaacaagatt
       61 attaccttta cttgtatgca aattaagttt tatgggctgc tcttgtaagt taaaaatttt
      121 taccctttta aaaaaacaag aaagattaaa atcatgattg ccttctaagt agataatttc
      181 aatttttaag gccaattctt ctaaaagttc tatgtaaggt ttagcaaatt catgtgtagc
      241 agagatttcg cctataagca aatcgaaaat atcacccata agtatgagtt gaggggtgga
      301 aattttacct ttttttaagg cttgtaaaaa ttcccaaaat ccctttcttt gttcattttc
      361 atgagcatct gcgattaaaa tcgctccatt ttgtagtaaa attttttatc cttaaaattt
      421 caaaggctca taatttatag aaaggatttc aaattcactt tcaccttttg gcaaacgcac
      481 tttaaaatca tctccttctt tttttccaag catagctttt gctattggag atgcgatgga
      541 aatataaccc ttatctaaat ttccttcgca aattcctact agagtatatt tgctttcttt
      601 ttctgtatcc aaatccatga tcacaacact tgaaccaaat ttcacactat cgtgctcata
      661 acttgaagga tcgatcactt gagctcttgc tagcaagtca ctaagctctg caatacgact
      721 ttctatcaaa gcttgctttt ctcttgcagc atggtattca gcattttctt tcaaatcccc
      781 atgacttctt gctgtatcga tttctattac aacggcaggg cgttgattgt cttttaaatc
      841 ttttaattct gcggctaact tatcatagcc aaattgactc attggttctt tttgcatgat
      901 ttatcctttt atatttcgtt taggattttt gctaaatttt tagcacttcc aaattgtaaa
      961 tattctttta aaaaatcaac tttagcaaaa aatgccttat aatcatattt attgtaagct
     1021 tcatataaat ttaaaacatt gactttatct tgtaaaaatt caggatttaa agcttctttt
     1081 ccagcgaaat cacaaaaaat atttgcaagt cctatatgtt ttaattttac aaaaagtttt
     1141 gcgataaaaa tatcgatagc ctttgcctta taagcaagaa caaaaggagt tcccactaaa
     1201 gctgcttcta aagtagctgt tccactacaa ataaaggcaa aatcagcttt tttaagcact
     1261 tttggagtgt tactttctat cttaaattcg ctaatatcac cataaacttc taatttttca
     1321 agattaaatg agggaacgca aagaattttt tcacccttaa atttttgaga aagttcttta
     1381 aaaataggca ttaaacgcct aatttcacta cgccttgaac ctggtaaaaa ggctatagtt
     1441 ttttcatcat ctttttttga aaatgtatga ttaatatctt cttgattttt aaattctttt
     1501 atctcatcta aaagcggatg gcctatatag gtgcttttgt taaaaaattg attatcaaag
     1561 ggcaaaatag aagctaaaat atcaaaatga ctttctatga taggtatgcg accttttttc
     1621 cacgcccaaa cttgaggcaa gatataataa atgcgtggaa ttttactgcc tgcttttttt
     1681 aaagccttgg caaaagggat attaaaagcg ggagaatcga tacataaaac tgtgtccatt
     1741 gtttggctta aagttagatt cactaattct ttgatcgctt tttttgcttt gaaaatcaaa
     1801 ggtaaaactt ctataaaacc catagcacta aattcatgtg agctataaag tggtttagaa
     1861 tttaaatcaa attctttgca taaactctca tcataaatcc catgaagttc aaattcacca
     1921 aaatcttttt tataagcttt taaaacttct tttaaatgca aatttgctga aggctctaaa
     1981 gcacaaacta aaaaggtttt caaaaaattt ccttatcaat attttaaaca ttttatctta
     2041 ttttgactta attaaaagaa gttatgcaag aatacacgct aaaaagcgtg tatgaaggtt
     2101 tattctctcc agccgtattt tttaaaaatt tctttagctt ccttagaact taaataagca
     2161 ataaaatctt gtgtttcttt gctcgcacct tctttagcta ccacattaaa agttctataa
     2221 acaaccaaat ctttttctat agctacggca gttcctatat caggattgct ttttgaccag
     2281 tcaatccaag tgatccaagc atcggcttga tcttgtgcga aaagctttct tgcacttcca
     2341 ctatttggaa caaaggtcac gatattgttt ctaaaatttt gtatggtttt tatatcttga
     2401 gttctaccta tcatgtcttc ccaaactcca gttccagaag tattgctctt tccagcacct
     2461 tcaggcacaa cgattcttac ttttttatta gccaaatctt ttaaaccttt gatttttaaa
     2521 ggattgcctt tttgagtaag tatgatggct tctctaaaat ataaaggctt gattttactc
     2581 acattaaaat cttttccaaa atcactcgct atagctaaag ccgattgatc tgaagcgcca
     2641 aataaaatat ctgcatcttt tttagccttt tcaaaccaag tcgcttgagg gccaaaattt
     2701 acatttactt taacgcctgt tttttcgcta tatttgtttg ctatatcttt taaggccgtg
     2761 tgtgggccac ctggtccgta aaggtttaca tctgcatttg ccatactaaa agctaaggca
     2821 catgcaccaa ataaagtaat aatttttttc atagtatttc cttttatgat aaatttttat
     2881 tgattgaagg taagatttta gaaattatat gttaataaat agttataatg taacaaaaat
     2941 attattaaaa tctaactttt gcttggtatt tttgcaagca aaagttaaaa ttgttattga
     3001 tgcttctttt tagcgctaaa atgacataaa gtagaacaaa gtatacaaag aatacaagca
     3061 ctaaggagca tgataagacc agcattccaa ctaccatagt aatccacagc ccaacctatg
     3121 cttttgttcc aagtgaagcg ccgactacat aactcataaa gccatgaagt cctacacaag
     3181 atcctactgc aaaagcagga acgacttcca tagtttgcat acttgctaaa aattgtggta
     3241 tatagactaa acaccccgcc atagctgcaa agaaaataac catataaaga ttatttgaag
     3301 taaaatatcc aataatcata aagaaaataa tcaccatggc gcctatagca ggaggcattc
     3361 tatagccttt aaaaatttta tctgaaatat atcctgcaag taaagtagaa ggtatagcag
     3421 cccattcaaa aagccaaaag gcaataccta tttgttcttt attaaagcct tttgtttcta
     3481 gcaagtaaat aggaagccaa gaaataagcc caaaacgcac catataaaca aaagtatcca
     3541 ttcaagccac atgccaagca tttttgtttt taagtacata atgataaaaa atttcaaaac
     3601 tgcttaaatt tggagtttct atagctttga tttcttctgt tttaatccct cgcatttcat
     3661 tgatttcagt aatatcaacc aaaccttcat ttttaggatt tcctttaact gcataaagcg
     3721 cataaagact aatgataact gcacaagcag caggagtata aaaatgattc atgtgccaat
     3781 atgtttcgtt aaaatttgcc atactcacac ccaataatgc tgctaaagca aaacctgaaa
     3841 gcgaaactat aggagcaact atcccgcctc ctatattatg tgagatattc caaacggccg
     3901 tgtaaattcc ccgctctttt ttaggatacc agtttgcaag agtgataaaa gaaggaccta
     3961 cccccatacc ttgaaaaacc ccaagcgcga taacaaaacc tacataagcg taaaaagaat
     4021 ttgaaaaacc aagtaaaaca tttacaagag cacataaaat aagacctaaa gccatgtatt
     4081 ttttaggacc agctttgtcg cttataacgc tcattgcacc cttgctaatc ccgtaagcta
     4141 taagcattga gcctgtgatt gttccgatgt ctgatttact gagattaagt tgattttgta
     4201 taaatggagt tgaaagagtg atattatttc gcacaagata atatcccata tatcctataa
     4261 aaaccccact taaactccaa gttctcattt tgtaatatct aggtaaaatt tcctaaagag
     4321 gaaatttaat agcttttgcc ttaggtttga aaaaatcaaa catatttaaa ccatccttac
     4381 taactttata tttttatagt ttaaataatg ttaatcgata taaaataaaa aaataattaa
     4441 aaataatacg aaatttatat aatttaaaaa ttaaaatttt atactatgaa gctttaaaaa
     4501 aatatgttaa aatccagatt tttatctttt gcaaggaaga caatgaaaga aattcttatc
     4561 actaatgacg atggttatga aagcgaagga cttaaaaaac tcattaagat gttaacaaaa
     4621 gaatttaaag ccaagatcac catagtagct cctgctagtg aaaaatcagc ttgttcgcac
     4681 tctataaccc taaccaaacc tttgcgtttt gttaaagtgg gaaaaagatt ttacaaactt
     4741 gatgatggca ctccagcaga ttgtgtttat cttgctttgc atgctttata caaaaagcgt
     4801 ttgcctgatc ttgtaataag tgggattaat aaaggtgcta atgtaggcga ggatattacc
     4861 tactcaggaa cttgcgcagg agctatggag gcggttttac aaggaattcc tgctatcgct
     4921 ctttctcaat tttataaaaa aagcgaaaaa gaactagact ataaaaatgc tttacaaatt
     4981 accaaaaaaa tcattcaaaa tatttttgat aaaggttttc ctttggaaaa aaaagaattt
     5041 ttaaatatca attttcctgc aaaatcaaaa atcaaaggca ttaaaatttg taaagcaggc
     5101 aaaagggttt ataattttga agcccattca aatgtcaatc cgagaggagt agagtactat
     5161 tggcttgcag cggcgaattt agactttgaa gatgagaaaa atagcgatat tgccttactt
     5221 aaaaaaggtt acgctacaat aacacctata atgctggatc ttacagctta tgaaagaatg
     5281 aaaaaagtta aaaaatggtt aaaggcaaat gatgaatgat agatttacac gtataaaatg
     5341 gctagttgga gaagaaaaat ttcaaaaaat ttcacaaaca aaagttttgg tttgcggact
     5401 tggtggagtg ggtggaattt gcgttgatgc gctttatcgt agcggttttc aaaatcttac
     5461 tttaatcgat gcggataaat ttgaaatcac caatcaaaac cgccaaattc atagtgaaaa
     5521 tttaggcgaa gaaaaagcta aggtttttgc tagaatttac aatgctaagg gtatagtaag
     5581 taaaatagac aatgaatttt tagcaaattt tgatttaagt gaatttgatt taatcatcga
     5641 tgcaattgat gatatccctg caaaagtagc acttgccaat ttgatcgatt ttaagcgtca
     5701 aatttttatc tcttctacag gtggggctag aaagcttgat cctacgcgta taaaaactac
     5761 aagtatattt aaaacccacg gagatgcttt agcaaaaaaa tttcgttacg agcttagaaa
     5821 atcaggtttt aaaggaaatt ttgatgtggt tttttcagat gaggaagcgc attgtaaaga
     5881 tcttggatct ttcatgggtg tgactgcatc ttttggttta gctttagcaa gtttagcatt
     5941 aagaaaagtt cttgctagat aagattgaaa tttaaatatt tatcttagat aaattcattt
     6001 atctaagata gaaaaaatta caaaaatagt tagatattag aaaatagctc cgtgtttttc
     6061 ataatttgtt atttttgtag cagtgttatt ttcatctaca aagacaactt ttggtttaaa
     6121 tgtttttgct tcttcttcgt taaaatcagc ataagacata atgatcactt tatctcctac
     6181 ttcagcaaga cgagccgcag cgccatttaa gcatacaacc ccttcttctt gtgtagcgat
     6241 ggtgtaggtt tcaaatctag cgccattatt gacattgact acttgaactt tttcgtattc
     6301 taaaattcca ctcgcttgca ataatttttc atctatgctt atgcttccta cataatcaag
     6361 cctagcttct gttatgtttg cacggtgtat ttttgatttg agtaaagtaa tgttcatttt
     6421 aatccttgta ctaaaaaatt atcaatgagt cttgtttttc caacaaaagc agccactgct
     6481 cctaaaacat tatcggcgat atttttaata ttttccatag tgttaaaatc aactaattct
     6541 atataatcga ttttgattaa tttttctttt tctaaaatat ctttcatagc ttggataatt
     6601 ttggaagtat ctttttctcc ttcttggact aatttttcag ctaaaaaaat gctttgagat
     6661 atagctagtg acgcttttct ttcttcttcg ctaagatata catttctaga gcttttagct
     6721 aagccatctt cttctctaat gataggacaa atttgaattt ttaaatcaaa atttaaatca
     6781 tcaaccatat gtctaacgac tacgcattgc tgcgcgtctt tttgccccat atagactata
     6841 tcagggttta ggatattaaa aaatttagcc aaaactgtgc aaacgcctct aaaatgcccc
     6901 agtcttttag ctccacaaag cttatccgtg atcgtgttca tatccacata ggtgctaaaa
     6961 ttcttaagat acatttgagc tgcatcgggg ataaaaacca tatcaacgcc attatcttga
     7021 cacattttaa tgtcgcgttc taaatctctt ggataactag aaaaatcttc attagggcca
     7081 aattgcatag gatttacaaa gatacttact atgactttat cttgtgtttt ggcatttttg
     7141 actaaactta aatgcccatc gtgtaaaaag cccatggttg gaacatagcc tatgctaagg
     7201 ttatgtgatt tccaattttt tacaatttgt tttgcttctt tgatagaagt aatgacttcc
     7261 atatttgtat ccttagtata atttatctaa taattcatca tctaaataat caaagctgtg
     7321 ctcttcggaa ggaaaaatac cgcttttaac ttcatctcta tatttttcaa ctcctacttg
     7381 agggtcaatt ttatcaaaat gctttacaaa ttttgcttta aaatctttat ttaaacctaa
     7441 aagatcatga taaactaaaa cttgtccatc gcagtattta cctgaaccta tgccgattgt
     7501 tggaatttct aaaatagagc ttattttttg tgctaatttt acaggtacgc attctaaaac
     7561 caacatacaa gcacccgcat cttgcacagc ttttgcatca tctatgattt tttgagccga
     7621 ttgtaaatct ttaccttgaa ctctatatcc acctagcata tttacagctt gtggggttag
     7681 tcctaggtga gcaacgacgg gtattcctga ttgggaaatt aatttaatct tgcttgcgat
     7741 ttctataccc ccttccactt ttaccccatt tgcatggctt tctttgataa atcttgaggc
     7801 atttaagata gcgtcacgat ccgagctttg ataagacatg aaaggcatat ccgcaagtac
     7861 gaaagacttt ttagctccgc gagaaacagc tttggtaaag atcaacattt catccatggt
     7921 cacacttaaa gtatcttgca tgccaagcac tgtcatagct aatgaatctc caaccaatat
     7981 gatatctata tcgcaattat ctagaatttt tgcactatgg tagtcatagg cacttaccat
     8041 ggttattttt tcatttttac cttttttttc caaaaaacta agaatacttt ttctcattta
     8101 aaatacctcg tttagctata aaatagtaag caaaaaacta gcatataaat tttcataaat
     8161 agtaaataaa cgataaaaca aaatatattt aattaatgga ttgttttaat ggttacaatt
     8221 ttggaaaatt tctgtagaaa aattaaattt ttacttttgt ttatcaagtt ttcctacgat
     8281 gatagggtta aaggctttta tggatagtaa aagcgtatcg ccgattttta catttttata
     8341 agttcttaaa aattcttctt cgctaagtgt gattttaacg atatcttgat ttaaaagtag
     8401 ggtaaaaatc atcaaaatat cacttttttt aatctcaagc aaagttgcac ttaaacgcag
     8461 tttcgcactt aaatttgatg aggtaaaaaa ttcatttgtt cttgcatctt tgatgatttt
     8521 tccatcacta agctctaaaa ttctatgact taatttgtaa atttcagcca aatcgtgact
     8581 taccaataaa gtagtgattt taaaatgttg taaaattttc acaagctcat cttgcaaaaa
     8641 agatcgcatt ttaaagtcta atgcactcaa aggctcatct aaaagtaaaa tttgcggttc
     8701 tctcgctaaa gcccttgcta aagccactct ttgtgcttgt ccaccgctta aatttttggg
     8761 ataaattttg gctaaatttt ctaaattcat taagcttaaa agctcttcta ctttttgttt
     8821 tgaagtcgca gcgtaagaaa tgttttcttt tacgctcata tttggaaaaa gagcataatc
     8881 ttgaaaaaca aagccgattt ttcttttttg tatggctaaa ttgatatttt tttgggtatc
     8941 aagccaaagc tcatctccta cttctatgcg cccaaattca ggttttataa gtcctgcaat
     9001 gattttaagt aaagtcgttt ttcccgcacc gctttctcca aaaatagcag tgatttcatt
     9061 tgcttttagg caagtgttta attctagttg cttcttgcct tttgctgtgt taatgggaag
     9121 ttttatatcg atttttatca taaaattggc ctatagagcg atttttttgt tcacaaaata
     9181 aagacttaag agtatagcaa aagaaatcgc aaataaagta aaagcgtatt gatgtgctaa
     9241 ggtatagttt aaaacttcaa gctcatcata aatagcaata cttgcgacca aagtttcacc
     9301 ttttttgtgt ccacctatca tcatcaccac tccaaattca ccaatggtgt gtgcaaaact
     9361 catcgcgcaa gcactaaaaa tccctacttt agaattgggt aaaatcactc taaaaagtgt
     9421 ataaatttta ccctttccta gagcataaga agcatcaagt aggttttgat tgattgatga
     9481 aaaagcactt tgtaaaggat ttaccataaa gggcagagaa aaaatcaaag aagcaaatac
     9541 taaaccttca aagctaaaaa ccaaagaaag gttaaaatat tcttttaaaa attgtcctaa
     9601 aaagctgttt tgtgaaaagc ttatgagtaa ataaaatccc aaaacacttg gaggcaaaac
     9661 caagggcaaa gctacaaagg tttgcaccaa gcttttaaaa ggaaatttca caaagcttaa
     9721 aagataggct aaaaatactc cgatgaaaaa gagtataaag gtagtgataa atgcaagttt
     9781 aaaggtaaga taaagggttt gtaaaaaatc attatccata aatagccttt aaaatgatat
     9841 cgttttcctt gacaaagcaa agccattctt gtccttcttc gagcttaagc tctaaggctt
     9901 tttctttagc gataatgcta gaaatttcat caccctcaaa atcaaaaaag atatgatata
     9961 gaattttgcc ctttttaata cttttaatcc ttgctagaaa tgaattttcc acacttaaaa
    10021 tagaatgagg caaggcaaag ccaagttcgt gttctttaaa aagcacttga atttttgtac
    10081 ctattttaag atcttgcaaa gaatgaagat caagcattaa aactttaaaa atatgctctt
    10141 taatactgat cttaacgatg acaatctcac cctcatttaa aagctctata atcttgccat
    10201 ttaagatatt caaggtgtgt caaatccgta ttttttaaag atttcttttg ctttttgtga
    10261 gctgataaaa tcgctaaatt caaaggctaa ttttttatct ttagcgtatc ttgtgatgac
    10321 atagctttgt tttaaagggg tgaagtattt ttgatcgatt aaaatagctt tgcccttagg
    10381 atgattgata gaagatacta aagaataagc cacaataccc aaatccgcat tattgctatc
    10441 gacatgtaaa acgggcacgg agatattttc acctaaaaca attttatctt caaagagttt
    10501 gtctaatttt aaattttcaa gtacttcttt agcagctact ccataaggag caacttttgg
    10561 atttgcaagg cttaggtgat gaattttatt tgctttatct tttagctttt ctatcccacc
    10621 ttcaagtaag ctttcatcta agctatataa ggctaagata cctaaaacat aaacttttgg
    10681 tttatctaaa gcgttttgat cctcataaat tgcttgcgcg tattttgtat cggctgaaaa
    10741 aaatagatca aattctctcc cttgtttcaa aagttgataa tactttcccg aagcaccaaa
    10801 aacaagatct atattgtcat tagggtgtga ttttaaaaat tcatttttga cttcttccat
    10861 agcttttgaa gctgaagaag ctacgaaaac acttaaattt tgtgcattta aatttaaaga
    10921 taaaaacaac actataaaaa ttaacacaag ctttttcact gcactttcct ttgtagataa
    10981 tcttgatttt ttgtattata acataagaaa ttttattttg tatctttttt gcataaaata
    11041 aaaataggat gataagtgag tttattttgg aatttttctt caaattcttt taagaattgc
    11101 ttgtttaagc gataaaatcc caaagaattt accccgctta atttcaaatg cttaaaaacc
    11161 tctaaagcgt tttgaaattc caaatttaca atttcttcag tgattttaat atcagaaaaa
    11221 tagggtttaa aaatttgttc aagttctttt gtgctaaaat attttaaacc caagcctgtg
    11281 ctttgtttga tctcttttaa attcattttt ccaaaagtag aaagaagtaa aattcctttt
    11341 tcatttaaca tatttgctag tgtgggcaaa acctgcttta aatcaagcca ttgcaaactc
    11401 gcattagaag tgataagatc aaatttttgc ttgcttaaaa tctgtgtagc tagggtattc
    11461 atatcaaaaa tttctacatt aagattgtca ggataatcca aaatatcatt ttttagatat
    11521 tcatcaaaag tgataatttt tgaaagtttg tcgctaaatt cgcccctacc acaaccaaat
    11581 tcaaacactt ttttaaaatg cgaaatttct aaatttttta aaatttcaca aagttttaaa
    11641 cccattaaat cttgcacttt tgcgtgtttt tgataatctt ttgcttttaa aaaattcaaa
    11701 tttcatccca agttttaaaa tgaaaaaaag caaaatgtgg ctcatttagg aaaataagct
    11761 ttgaaaaagt gttttttaaa gcattttgag gaaaaatttc atcattattg cttgagtaaa
    11821 ttttgtccca aataaagttt tcattacact cttttgaggc aaattcgaaa agtttttcaa
    11881 gctcggtttt taaatctttt tcatctttaa aaataaagtt ttttgcttca tttttgcgct
    11941 ctttaaataa agatttttta aaagccgtga gatcaaattt tttaatttgc ttagcaaaaa
    12001 ttgcaggatg aattcctttt aatttatcta tgccaaaagg agtgccattg atagctattt
    12061 tttgcgaaaa ctctatatct tttaaaactc tacttgctac gcaaactccc atagaaaaag
    12121 ctatgagagt gattttagaa aaagacttta aatcaaattt aaagtctaaa ttttcataat
    12181 cataaaccaa aactacattt ttatcgcttt ttaaatgtgc aaaatggcta ggatgtgaag
    12241 caaaaccgcc aaatactaag ataagttctt gtgagttttc attttgaatt aaattgctta
    12301 ttttcataaa agttctatca ctttctttaa atcttcttta ctaagtcctg catgcaaaga
    12361 aaaacgaatt ctagctgtat ttttaggcac cgtaggttct tttatagcgg gtgcaaaaat
    12421 gccatttgtt tcaagttttt ttgctaattc tatagtcttt tgattttttc ccaaaaccaa
    12481 ggagatgatg taagcatcgc ctaaaatttg atgatttttt tctatgagtt gatttttaaa
    12541 aaagttgcct atgatttgta atttttctct tttttctttt agctcgctca ttttttcaaa
    12601 aataaatttt gtccaagcta tattgatagg aggcagcgct gtagaataaa taaaagctct
    12661 agctttgttg ataaaaaagc ttttataaag attattacaa attatgcaag cacccataga
    12721 agcaagagcc ttgccaaagg taaaaactat aaaatcaacc ttttcttcca aatttaaagc
    12781 tttaacaagt cccaagccct cctcatcaaa gcaacccacg ctgtgcgctt catcgatata
    12841 aagtttgatt ttagggtatt tttctttaaa ggcgatgagt gtattaaaat cagaaaaatc
    12901 accatccatg ctaaataatg cttcgcttaa aatgatgata ttttcataat gatcataatg
    12961 tttttgaatt aaattttcta aatgattcat atcgttatga tgaaagcgaa aaaattttgc
    13021 tccgccaagt tttagtccat caatcatact tgcatggatg aatttatctg ctaaaaaaag
    13081 tgtatttgga atgctcacaa gtgcagctat acaagagata ttaagatgat aaccgctgtt
    13141 aaaatgtaag atttcttttt ctttaaattt ggattttaaa aagctttcta attcctcata
    13201 aattgtaaaa tttccactca agctccttga acttgagctt gaaaaaaata agtcttgttc
    13261 tttgacatta tctaaaaatt catcttttaa agatttgcaa gagcttaaat ttaaataatc
    13321 attccccgct aaatttaaaa gctttttacc ctctttaaaa acaaaatttc cttcatgttt
    13381 gaggcttgta agttttctaa gattgtgatt tttttcaagg gcttctaaga tattttcaag
    13441 gctcattttt ttcctaaaat tcagaaattt aaagtattat tttgccaaaa tatatttaaa
    13501 aaagaagtta taatgcaaaa tcaaatctta aaaaatctcg atttagagca tatttggcac
    13561 ccttgtacgc aaatgaaaga tcatgaaaat ttgccactca ttcctataaa aagagctaaa
    13621 ggagtgtggc tttatgattt tgatgataag gcttatatgg actgtgtgag ctcgtggtgg
    13681 gtaaatcttt ttgggcattg taatgaaaaa atcgcaaatg ccattaaaaa acaagttgat
    13741 gagctagagc atgtgatttt agcaggtttt acacatgagc ccatcatcaa gctttctgca
    13801 agactttgcg aaaaagtagg caggaatttt aacaaatgtt tttacgcaga taatggttca
    13861 agcgctattg aagtcgcact taagatgagc tttcattatc atttaaataa gggagtgaaa
    13921 aaaagtaaat ttttatcttt aagtaattct tatcatggtg aaaccttagg agccttaagt
    13981 gtaggagatg tagcacttta taaagatact tataagcctt tacttttaga gtgtttaagc
    14041 acgcctgtgc cacaaagtaa agattacact caagagcttg aaattttaaa agatatttta
    14101 gaaaaaaatg caagtgaaat ttgcgctttt atacttgaac ctttggtgca atgtgcggga
    14161 aatatgcata tgtatgaagc agggttcatt gatgaggcca taaagctttg ccatcaattt
    14221 ggagtgcaag tgatttttga tgaaattgca gtgggctttg gacgcacagg aactttgttt
    14281 gccttacatc aatgcaaaca aagccccgat tttatctgtc tttcaaaagg gataacgggt
    14341 ggatttatgc cactttctgt agtgcttaca agagatgaaa tttataatgc tttttatgat
    14401 acttatgaaa gccaaaaggc ttttttacat tctcatagct atacgggaaa taccttagct
    14461 tgcgcggcag caaatgcggt tttagatatc tttgaggatg aaaatatttt agtaaaaaat
    14521 caaattttaa gcgagtttat caaaaaagaa ttttcaagac ttgaaaaatt tgactttttg
    14581 ggtaatttta gaacttgcgg gatgatcagt gcttttgata ttttaagcac caagtataaa
    14641 cgcgtaggac tttttgtatt tcaaaaagcc ttagaaaaag gtttgctttt aagaccttta
    14701 gcaaatacga tttattttat gcctccttac atcatcacaa aagaacaaat cgtttatata
    14761 ctagagagtt tagagcagat ttttaaggaa ttttaagttg taaaatttct tgcatttgct
    14821 ctttaaaatc tttatttaaa atgctatttt catcaaaaaa atcaagattg attataggaa
    14881 tttttgcata attttttata aaatcatctt gtaagatatc ttttttaccc atcattacaa
    14941 gggctaaaag attgatattt ctttgcttta aagcttcaat gctaagcaag atatgattaa
    15001 tgcttccaag atagtatttt gctaccaaaa tcgtagggtg tttgaaaata ttcacaaaat
    15061 caatcatagt gtaattttca tccataggag aaaaaagccc acccgcaagc tcaataagta
    15121 ggtttttgct ttttggtaaa atgatatcta aggctttata atcaagcttt tctttgattt
    15181 ttccaagatg aggagaagct ggagtttgca aaaaaatacc ttctttaaaa atctttgttt
    15241 ttgggctaaa ttttgcaata aactcgctat ctgttggagt tcctgcttga atgagtttaa
    15301 aataatcata gttaaaattc gcacaaaaag ctgcactaaa atgtgttttt cctacatcag
    15361 tatgtattcc actcacataa atttgcacaa aaaatcctta agaaagaaat tttaaaccta
    15421 ctgtacaagc aataatcaca gtgattaaaa aaagttttaa aaaactttta ctttctttat
    15481 aaaaaagcac tcctatcatt accccaccag cggttccagc tcctgtccat atagcataag
    15541 caacgctcat agcgatattt tgcatactta agcttaaaaa agtaaaagaa aatccaaaac
    15601 acactatcaa agctaaaagg taaagcttgt ttttagtgct tacaagttct ttcatgatca
    15661 ccacgccaaa aatttcacag gcagtagcta aaaacaaata aaaccattcc ataactaagc
    15721 ttccttgctt acccatttaa gggctataat acttaaaagt aaaattgcta taagcacaag
    15781 tttaattata gaaacagctt cgttaaaaat aaacatttcg tttaaaacca ccccaatagt
    15841 gccaatgcct acaaaaacac tataagtaat acttacttca agtctttcac aagcttttaa
    15901 aaagcaagta aaagaaatac aaaccccaat ggctgttaaa atatactgcc aaatttctgt
    15961 agaatattta agtccactta cccaaaagca ttctataatt ccacctaaga ttattaaaaa
    16021 ccaagctata ttaatattga atttttcatt cacatgaagc cttaaattaa cataatattt
    16081 gtaaaacaaa ttatatctta aagaaattaa aagaagctat aaatttactt ttccataagc
    16141 caaaattaga tataatcaaa gctcattttt taagaaagga caaaagatgt tagaaggcat
    16201 cgttagagag agtatcggta gaaaagctgc taaagcttta aaaagagatg gttatctaat
    16261 cgcaaacatc tatggaaaag gattagaaaa catcaatgcc gcttttaaag taaatgagtt
    16321 tattaaggaa gttcgtaaaa aaactacttt aatttttgat gtaaaagtag gttctcaaac
    16381 tttaagcgtt gtagttgtag attatcaaaa agatcctgta actgcagaac ttaaacatgt
    16441 ggatttaaaa gttgcacaaa aaggtgtgat ttctaaatac atggtcccag ttaaaatcac
    16501 aggaacagct ataggtctta aaaataaagg tgttttaatc caatcaaaaa gaagattaaa
    16561 agtaaaatgt gcagctgaaa atttaccaaa tttcttcgaa cttgatgtaa gtaaacttga
    16621 tgtgggtgat gctttacttg ttcgtgatat tgtagttcct gcgggagtaa ctatgattga
    16681 tgctgataga gtagcggttg taggtgtaga aaaagctaga tgattttagt cgtagggctt
    16741 ggcaatatag gcgtagagta tgaaaatacc cgtcataatg tcggttttat gctaattgac
    16801 ttacttttaa aagaaagcaa ttttacaaat cttacaaact ctaaatttaa aggagagctt
    16861 tttaaaatag gttcttcttt acttcttctt aaacctagta tttatatgaa taattcagga
    16921 cttagcgtaa aagcagtgaa tgatttttat aaatgcgaaa gaatgatagt tatccatgat
    16981 gatatagata taaatttagg agccttgcgc tttaaaaaag gcggttcaag tggtggacat
    17041 aatgggctta aaagcataga tactttatgt ggaaatgact atgaaagagt gcgtatagga
    17101 gtgggaaagg gtgaaaatgt gatttcccat gttttaggta aatttaaatc cgaagaagaa
    17161 ataactttaa gcaaagtttt agagcataca aaaaaagctt tgcttgagct tattgaaaat
    17221 gatgatttgt ctgctatatc atccaaatac agcctaaagg cttaagatgt ggatattttt
    17281 tcgttttatt tcagggattt atttaaaaaa tttttttatt atattttttt ctttacttgg
    17341 tttttattgc ggtattgatt tactcttaaa ttttaaagat ctaccaaaag ccgcaaatct
    17401 tgatttgctt tatgttatgt ttttatcttt ttcggcagtg ccttatgtat tacccatttc
    17461 tttgattttt gctttggtag tttctttgat ttctatgatc agagcaaatg aatttgtaag
    17521 tctttatgcg ttaggactga gtagaaatta tgttatttta tttccttttt tatgggcttt
    17581 atttttttgt tgtatttata taggattgaa ttttacttct tttgcttatg caaatgatta
    17641 taagagaaat attttgaaaa atggcactat tatgaatcaa agtggagaag tgtttttgaa
    17701 atttaacaat aattttgttt atatttcaaa gataaacaat ggacaaaata gtgctcaaaa
    17761 tataaaaatt tttaatatta atgatttaaa tttaagctct tttgtaagtg ctaaaaatgc
    17821 ccattttgaa ggtgaaagct ggattttgcg agatggtaat attacattat tacctaaaaa
    17881 ttatgaactt gctaatgatg gtttaaagat acaagatttc tccgagctta aatcacttga
    17941 aggttttaaa ccaaagatta tagaaggggt tgctagtaat agtgattatt caatatctga
    18001 tgcacttgaa agttttgagc tttttaaggc gcaaaatgtc aatacagata ctcttaaaat
    18061 caatctttat aaatttgttt ttactccttt ttttgcacca tttttaatgc ttattatgta
    18121 ttattttttt cctgtaatag caagattttt taatcttgct attgtagctt ttgtagcttt
    18181 tgtagcgact ttgatgattt ggggagtctt gtttttgctt actagattaa gcgaaaatag
    18241 tgtgattgca agtgaaattg gcattgtagt gcctattata attttgggtt gtttaagtgc
    18301 ttatatgtat tataagcatc gataaattaa gctttgtgta gtaaaattat aaaaattaaa
    18361 ggttaaatat ggattataaa caattaaaac aagaatttaa tacccctttt tatatttaca
    18421 attttgattt cataaaagag cgttttttaa atctcaaaga ggcttttaag gctagaaaat
    18481 ctcaaatttt ttacgctgta aaagccaatt caaatttaag tttgttgcaa atgcttgcaa
    18541 atttagatag tggatttgat tgtgtgagta taggcgaggt aaagcgtgcc ttaaaagcag
    18601 gagcaaaagc ttataagatt atttttagtg gagtaggaaa aaccaaagaa gagttaagac
    18661 aagctttaga atatgatatt ttatatatta accttgaaag cgaagctgaa atgatgcttt
    18721 tagaaagtgt ggctaaagaa cttaatctaa aggcaagaat cagtattcgt gttaatccaa
    18781 atgttgatgc aaaaactcat ccttatattt ctacaggatt aaatgaaaat aaatttggtg
    18841 tcgaaattga tatagcaaga aaaatgtatc tttatgcaaa aaattcatct tttttagagc
    18901 ccgttggagt gcattttcat ataggttcgc aacttttaga tatttctccc attcatgaag
    18961 cagcaggcat cgttgcaaaa cttgtaagag agttaaaagc cttgcaaatc gatcttaaat
    19021 tttttgatat aggcggtggt ttgggtgtgg cttataaaaa agatgagtgt gaatctgatc
    19081 tttatgatta tgcacaaggt atattagcac aacttcatgg gcttgattta actataggaa
    19141 tggagcccgg aaggtatcta gttgctaaaa gtggagaatt tgtttgttca gtgctttatg
    19201 aaaaacaaaa taaaaccaag cgttttgttg tagtagatgg agcgatgaat gatcttatac
    19261 gcccaagttt atacgaggct tatcatgaaa taatcttacc ttataatcaa ggcgaagaga
    19321 gtttatgtga tgttgtaggt ggaatttgtg agagtgggga cttttttgct aaagcaaggt
    19381 ctttgcctgg cactcaaagt ggtgatataa tggttattaa aaatactgga gcttatggtt
    19441 ttagcatgag tagtaattac aatactcgta ataaagtttg cgaattagcc cttgaagaag
    19501 gacaggtaag attgatccgt caaagagaaa attttgaaga tcaaatcgct ttagaagaga
    19561 aatttttaaa ggcttaaaat gtttttttta gatgttcaag ggactttaat ttctgatcat
    19621 gataaatctt taatccatgg tgctaaagaa ctgatcgatt ttttaaatgc aaaaaatctt
    19681 ccttatctta tcatcactaa caatacaaaa aaacttgatt ttttagaaaa attacagcaa
    19741 aaaggattgg ctataaaaga aaatgcttat attgatcctt tcagcgtttt aaaacacctt
    19801 ttaagacctt gtaaagttgc ggcttttggt gcagatgagt ttataaaaag tcttgaaaat
    19861 cttggttttg agctcgattt tgtaaatcct agtgctgtgc ttgtggctag ttatgatgat
    19921 tttaaattta aagattttgc cactatgata gaattggcta gaagagaagt tagatttata
    19981 gctatgcacg aaactagtat ttataaaaaa gatggtaggc cttatcctgg tgtaggtagc
    20041 attatggcta tgcttaaaaa tgctattgat tttgaatacg aggttgtggg taagcctagc
    20101 attgcttttt ataaagaagc tttaaattta ataagaagac aaaattcaaa aatcgatttt
    20161 gaagatatta aaatcattag tgatgatttt aggggtgact tgcttaaggc aaaagaactt
    20221 ggcatgaaaa ccttgctagt tttaagcggc aagataagcg acacaaaagg gcttgatacg
    20281 gatttgcttg atggagttta tcctagtgtt tttgagtttt taaaggatct aaaatgccaa
    20341 atttagaaga atttagaaat aaaatcgatg cggttgatga taaaatttta gatcttttaa
    20401 atgaaagaat gacttatgtt aaaagtatag gtgagcttaa gcaaagtagt gggggaagta
    20461 tttatcgtcc tgagcgtgaa agagccatta tcaatcgttt aaaaaatgca aatttaggac
    20521 ttttagatca aaatgccata gaggcaattt atcaagaaat ttttgcagtt tcaagaaatt
    20581 tagaaatgcc tcaaactata gcttatttag ggcctgaagg aacttataca catcaagcag
    20641 caagaagtcg ttttggtgcg atgagtcgtt atatagcctt ggctaatatc gaagatgttt
    20701 ttaaagagtt aagcaacaaa gaagcaaaat acggtgttgt acctatagaa aataataccg
    20761 aaggtgcagt gggcattact ttagattgtc taggtaagta taatgagctt aaaatttttg
    20821 gcgaaattta tatggatatt catcattctt ttgtaggaat taatgaaaat ttaaaagaaa
    20881 tcaaacgcat ttattcgcat ccgcaaggtt ataatcaatg tcgtaaattt ttagaaagtc
    20941 atgaacttag tgctatagaa tttgttcctt caaaatctac agctaatgca gcttacctag
    21001 cttcgcaaga taaatatgcg gcagcaattt gttctagaat agcggctaag ctttataatg
    21061 tgcctgtact ttttgataaa atagaagata atgcagccaa taaaacaaga tttttaattt
    21121 taagcgatat taaaaatcct aaaatgccaa attgtaaaac ttctatttta gcacacacag
    21181 cacataaacc tgggggactt agctttttat tagagcagtt taaaaaagaa aatatcaatc
    21241 ttactaagct tgaatctcgc cctgtaaaat caaaagaatt tttacacagt ttttatatag
    21301 attttgaagg gcatattgat gatgaaaatg taaaaaaagc cttaaaagat atacaagaga
    21361 ttgtttggct tggatcttat ttatcaggag aaaaagatga aatttaatga atttttaaat
    21421 aatttaagca attatgaacc cggcaaagat atagaagtta ttgctaaaga atatggcgtt
    21481 aaagaagtga taaaattagc aagcaatgaa aatccttttg gcgcgccacc aaaagctata
    21541 gaatgtttaa gacaaaatgc aaacaaagcc catctttacc ctgatgatag tatgatagaa
    21601 cttaaaagca cattggctca aaaatacaaa gttcaaaatg aaaatattat catcggtgca
    21661 ggcagtgatc aagtgattga atttgctata catgctaagt taaattctaa aaatgctttt
    21721 ttgcaagctg gagttacctt tgctatgtat gaaatttatg ccaaacaatg tggtgcaaag
    21781 tgttataaaa ctcaaagtat tactcataat ttagatgagt ttaaaaaact ttatgaaacg
    21841 cacaaagatg aaattaaact tattttttta tgcttaccaa acaatccttt aggcgagtgt
    21901 ttggatgcaa gtgaggcgac cgagtttatt aaaggtgtaa atgaggattg tttagttgtg
    21961 attgatgcag cttataatga atttgcaagt tttaaagata gcaaaaaaca tttaaaactt
    22021 tgcgaattga ttaaagaatt tgacaatgta ctttatttag gaactttttc taagctttat
    22081 ggattaggag gtttacgcat cggttatggt atagctaatg ctaatattat tagtgcattt
    22141 tacaagcttc gtgcgccttt taatgtgagt aatcttgctt taaaagcagc agttgcagca
    22201 ataaatgatg atgaatttgc taaaaaaact ttagagaata atttttctca aatggagctt
    22261 tataaagaat ttgctaaaaa acataatatc aaaattatcg atagttatac aaatttcatc
    22321 acttattttt ttgatgaaaa aaatagtaca gatttgtctg aaaaattgct taaaaagggt
    22381 ataataataa gaaatttaaa aagctatggt ttaaatgcta tacgcattac tataggaaca
    22441 tcttatgaaa atgaaaaatt ttttacagaa tttgataaga ttttaagata gataaatcaa
    22501 ataaaaatat gtaaaattcg ctaaactaag ggatgagaat taatggattt taaaaatatg
    22561 cttcatcaaa ttgggcaact ttatcaaaat ttaactcgca agcagcgtat agtgattgct
    22621 gcatctatta tagttgtggt tgggtttttg gtttttttag ctttatttcg tggaagtggt
    22681 agtaatgcaa ataatggata tgcagtttta gttgaaaatg taagcccaag ttcttctgct
    22741 gcaattgtag ctaaacttga acaaaataat attccctata aattagaaag tgaaaataaa
    22801 attttagttc cacaagatca ggtttatcgt caaagaatgt ttattgcaag cgaaggtctt
    22861 ataaaagata gtcgcgtggg ttttgaagct tttgatactc aagcttttgg agctacaaat
    22921 gaagagcaaa aggtaaaata ccaaagagcc atagaaggcg aacttgcaag aactattgag
    22981 actttagaac ctattcgtag cgctgttgta cacatagcat ttcctaaaga tagtgttttt
    23041 accgaaaggc aaattccgcc tacagcttca gttgttgtta atgttcgcga aggtttaaag
    23101 cttactagaa aacaaattga tggtataaaa aatattgttt cagcggcagt tccaaaactt
    23161 actaaagaaa atgttaagat tagtgatcaa agtggtgtgc ctttagatga gcaagaagca
    23221 tatgaagatg acttggttcg tgcgcaaatt aaatttaaaa gtgatcaaga aaaagcttta
    23281 gaagataaga ttatagaaaa tttagctcct tttgcaggtg gtatggataa agtaaaagtg
    23341 agtgtaaata tagattttga tttttccaag caagaatctc aaagtgaaat ttatgatcca
    23401 aatcctatag tgcgtagtga gcaaacttta aacgaggaaa gaacaggtag aaaagatcca
    23461 gaaattcagg gtgttccagg tgctgtttct aatataggtc ctgttgaagg acttgacaat
    23521 aaaggtcaaa ttgacactta taaaaaaaat caagttacta caaacaatga actttctaaa
    23581 actatcacaa atacaaaaaa acaatttgca acagttttac gcacttcggc agctgtcact
    23641 atagatggaa aatatcaaga tgtggttgat gaaaatgggg atgtgaaaag cgaatatgtt
    23701 ccattgacta aagaagagct tgcaagtgtt gagagtatag ttaaaaatac tattaatttt
    23761 agcgctacta gaggtgatag cgttgtggtg caaaatttac catttcatcg tgagtcgatt
    23821 agagttgaga gtaaagttaa aactttttac aatcgttttg ttgagccatt tattccgccg
    23881 gttaaatact ttattgcagc gattttactt tttatttttt acaaaaaagt tattgctcca
    23941 tttactcaaa aaatgcttga agatgtcgca gcacaagagg agatgcagca aggtccaaat
    24001 gctgttttag atgatgctga agatgcttta gagaaattta atgcagcaag gaaaaaagtt
    24061 gaagaacaac ttggttttgg ggataatttt aatgaagatt ctatccagta tgaggttttg
    24121 cttgaaaaat tgcgtggttt ggtaagtgat aaaggtgagg aaattgcagc acttttgcaa
    24181 aacttaattc aaaatgatag cgaatttggc gaaaaggata tgtgatgata aagctaagtg
    24241 aagaacaaaa aatggtctat gatgatttat cgatgcctga gaaggtagcg atatttctta
    24301 tacaacttgg cgaagatgca acaacttctg tgttttcaca tatggaaatt gatgtaatta
    24361 cagaaatttc acgttatatt gctatggcta aaaatgttga tagatctgta gctactgcgg
    24421 ttttagaaga attttacact ctgcttcaat caaatcaata tattaaaagt ggtggtttgg
    24481 aatatgctaa agaaatactt tttcgtactt ttgggccaga gattgcaaat aaaattcttg
    24541 aaaaactcac taaaagtatg gagaataatc aaaattttgc ttatttggcg caaattaaac
    24601 cacagcaact tgcagacttt attaccaaag agcacccaca aaccatcgct cttattttgg
    24661 cacacatgga ttctattcat gcggcagaaa ctttagagta ttttagtgat gaattaaggg
    24721 ctgaggtggt tataagaatg gcaaatcttg gcgatatttc tccaagtatt attaaaagag
    24781 tttctgcagt gttagaaagc aagcttgaaa gtcttacctc ttataaggtt gaagtgggcg
    24841 gcccaagagc ggtagcagaa gtgcttaatc gcttgggtca aaaagcaagc aaatcaacca
    24901 ttacttatat tgaacaaagt gatgaacgct tagcagagac tattaaagag cttatgttta
    24961 ctttcgatga tatacaaaaa cttagcactc aggctataag agaaatttta aaagtagccg
    25021 ataagcgtga tttaatgata ggtttaaaag gtgcaagtga agagttaaag caaaaattct
    25081 tagccaatat gtctacgcgt gcaagcgaag cttttcttga agaaatgggt tttttgggtg
    25141 ctgtgcgtgt taaagatgtt gaagatgcac aaagaaaggt tgttgaagtg gtgcaaaaac
    25201 ttgcagaaca aggtcttgtt caaacaggcg atgcggatga aatgatagag taggtgagag
    25261 atggttaatc gtagcaatgt aatttctggt ggggcttctg atcagcatgt tgttgaagga
    25321 tatcgtttta aagttatttc agaatttgat aatcatacag gtgaaaaaaa acatactcaa
    25381 actccagatg aagaaaatac taatatatct ttaaatgacg aaaaaccagt cgaagaaaat
    25441 caagtcattg cctctacaca agctgttatg gaaactcaaa ttccaacatt tcaaccaagc
    25501 tttgttgaag atttacttaa aaaaacagat gaaatgtcaa gcaatattat taaacttcaa
    25561 atgcaaatag aaagccaaga gaatgaattt aataaccgct taaattcaga acttgaaaat
    25621 gctaaagaaa aatttaccaa agagggttat gagaaagcaa aagaagaatt tcaaaaggaa
    25681 ttgagtgatt ttaaagataa gtatttaaaa agtatagcca aacttgataa tgcttgcgaa
    25741 aatcttgaaa atttcataga aaaaaatgag aaagaattag cagatactgc tatagatatc
    25801 gctaaagaag taatcttaaa agaacttgaa ctaaattcaa gtaagatagc ttatgctttg
    25861 gctaaagatt taatcggcga gcttaagggt gctagtgcaa ttgagcttaa ggttaatgca
    25921 gaggattatg agtatttaaa agagcaattt gatcagaatg ctcatattaa aataagtctt
    25981 gatgatgcaa ttagcaaagg aagtgttgtt attataagtg acgcaggcaa tatagaatcc
    26041 aatcttaact ctcgtctaac taaaattaaa aaaatggtga ataatgagta aaaaatttgc
    26101 ccatactcaa gaagagttag aaaagctaag tttaaaagaa ttagaaaatt tagcagcatc
    26161 tatgcgtgaa aaaatcatac aagttgtgag taaaaatggt gggcatttaa gttcaaattt
    26221 gggtgctgta gaacttagta tagcaatgca tttggttttt gatgcaaaaa aagatccttt
    26281 tatttttgat gtgtcgcatc agtcttatac acacaagctt ttaagcggaa aagaagaaat
    26341 atttgatact ttaagacaaa tcaatggttt aagtggttat acaaaaccta gcgagggaga
    26401 ttattttgta gcagggcatt ctagcacctc tatttctttg gcagtaggtg cttgtaaggc
    26461 cattgcttta aaaggtgaaa agcgtattcc tgttgctttg attggagatg gtgctttaag
    26521 tgcgggtatg gcctatgagg ctttaaatga attgggtgat tctaaatttc cttgcgtaat
    26581 acttttaaat gataatgaaa tgagtatttc aaaaccaatt ggagcaattt caaagtatct
    26641 ttctcaagct atggcaacgc agttttatca aagttttaaa aagcgtattg ctaaaatgtt
    26701 ggatatattg cctgatagtg ctacttatat ggccaagcgt tttgaagaga gttttaaact
    26761 tattactcct gggcttttgt ttgaagaatt agggcttgaa tatatagggc ctattgatgg
    26821 acataattta ggtgaaatta tttctgcatt aaaacaagca aaagctatgc aaaagccttg
    26881 tgtgatacat actcaaacca taaagggtaa aggctatgct ttagccgaag gaaaacatgc
    26941 taaatggcac ggggtgggag cttttgatat agatagtgga gagagtgtta aaaaaagtga
    27001 tactaaaaaa tctgctactg aaattttttc taagaatttg cttgatttag cctcaaaata
    27061 tgaaaatatt gttggggtta cggcggctat gccaagtgga acaggtcttg ataagcttat
    27121 agaaaaatat ccaaaccgtt tttgggatgt ggctattgca gaacagcatg cagtaacttc
    27181 tatggccgct atggcaaaag aaggatttaa accttttatt gcaatatata gcactttttt
    27241 gcagcgtgct tatgatcaag tgatccatga ttgtgcgatt atgaatttaa atgtggtttt
    27301 tgctatggat agggcaggga tagtaggcga agatggggag acgcatcaag gtgtttttga
    27361 tcttagtttt ttagctcctt tgccaaattt cactctttta gctccaagag atgaacaaat
    27421 gatgcaaaat ataatggagt atgcttattt acatcaagga cctattgctt ttcgttatcc
    27481 tagagggagt tttattttgg ataaagaatt taatccttgt gagataaaac ttggtaaggc
    27541 gcaatggctt gtaaaaaata gtagtgaaat tgctttttta ggttatggac aaggtgtggc
    27601 aaaagcgtgg caagtcttaa gagccttgca agaaatgaat aataatgcta atttgattga
    27661 tttaattttt gctaaacctt tagatgaaga gcttttgtgt gagcttgcta aaaaaagtaa
    27721 aatttggttt atttttagtg aaaatgttaa aattggcggt atagaaagtt taattaataa
    27781 ttttttacaa aaatatgatt tgcatgtaaa agttgttagc tttgaatatg aagacaaatt
    27841 tattgaacat ggaaaaacaa gtgaggtgga aaaaaatcta gaaaaagatg tcaatagttt
    27901 gttgacgaaa gttttaaaat tttatcatta aataataaaa aatattattt aatataaact
    27961 tcttttaata aaaattttat tattattttt acttaaaaaa gtaaggaata aataaaatgg
    28021 aattactaca aatgcttaaa aaacatgagt taaaagctac tccgcaaaga ctatgtgttt
    28081 taaaaatttt aaaaagacat gagcatccta atattgatga attatataca gaaattaaaa
    28141 aagaataccc ttcaatctct ttagcgacgg tttataaaaa tcttaatact ttacaagaac
    28201 aaggtttagt tgttgaaatc aatgttttaa atcaaaaaac ttgttacgat atctatgaag
    28261 aagaacatat tcatgttgtt tgcgccaaat gtggtggtat agaggattta agttttaaag
    28321 atgctaagct ttatgaatat caagagcatt tagaaaaaaa gataggcaat ctcgtcaatc
    28381 atctgtctgt ttgtgcttat gttgatagtt gcaaaaagtg tcattaagca aaataaggtt
    28441 aaaataaccc atatatttta agggttattt taatggttta tgaaattcaa aaaaactttt
    28501 tactatctga ttgcactctt ttagagaatt taaaaaaaga taatatacct tttcgaaatt
    28561 ctaaatttga aactttttat actcaaataa cttcaaatca tagtgt
//
LOCUS       DARGEM010000007        28393 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.007, whole genome shotgun sequence.
ACCESSION   DARGEM010000007 DARGEM010000000
VERSION     DARGEM010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28393
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.007"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..722)
                     /locus_tag="SFZ78_000241"
     CDS             complement(<1..722)
                     /locus_tag="SFZ78_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HEG8211153.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEKLSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFIKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNA"
     gene            complement(719..1492)
                     /locus_tag="SFZ78_000242"
     CDS             complement(719..1492)
                     /locus_tag="SFZ78_000242"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG8211154.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLHNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1548..2522
                     /locus_tag="SFZ78_000243"
     CDS             1548..2522
                     /locus_tag="SFZ78_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8211155.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPHLKHLAFRAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSVLKQNISYEKYEASRVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            complement(2519..3469)
                     /locus_tag="SFZ78_000244"
     CDS             complement(2519..3469)
                     /locus_tag="SFZ78_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG8211156.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(3466..4287)
                     /locus_tag="SFZ78_000245"
     CDS             complement(3466..4287)
                     /locus_tag="SFZ78_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8211157.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAAIGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            complement(4284..6278)
                     /locus_tag="SFZ78_000246"
     CDS             complement(4284..6278)
                     /locus_tag="SFZ78_000246"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG8211158.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKKFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            complement(6334..6954)
                     /locus_tag="SFZ78_000247"
     CDS             complement(6334..6954)
                     /locus_tag="SFZ78_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8211159.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            complement(6951..7283)
                     /locus_tag="SFZ78_000248"
     CDS             complement(6951..7283)
                     /locus_tag="SFZ78_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211160.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            complement(7293..8918)
                     /locus_tag="SFZ78_000249"
     CDS             complement(7293..8918)
                     /locus_tag="SFZ78_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8211161.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            complement(8925..9299)
                     /gene="hspR"
                     /locus_tag="SFZ78_000250"
     CDS             complement(8925..9299)
                     /gene="hspR"
                     /locus_tag="SFZ78_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG8211162.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQNK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            complement(9315..10208)
                     /locus_tag="SFZ78_000251"
     CDS             complement(9315..10208)
                     /locus_tag="SFZ78_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG8211163.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            10409..11827
                     /gene="htrA"
                     /locus_tag="SFZ78_000252"
     CDS             10409..11827
                     /gene="htrA"
                     /locus_tag="SFZ78_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG8211164.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKNGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            11903..12577
                     /locus_tag="SFZ78_000253"
     CDS             11903..12577
                     /locus_tag="SFZ78_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8211165.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            12574..13821
                     /locus_tag="SFZ78_000254"
     CDS             12574..13821
                     /locus_tag="SFZ78_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8211166.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            13914..13988
                     /locus_tag="SFZ78_000255"
     tRNA            13914..13988
                     /locus_tag="SFZ78_000255"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13946..13948,aa:Asn,seq:gtt)
     gene            complement(14080..14328)
                     /locus_tag="SFZ78_000256"
     CDS             complement(14080..14328)
                     /locus_tag="SFZ78_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG8211167.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(14339..14938)
                     /locus_tag="SFZ78_000257"
     CDS             complement(14339..14938)
                     /locus_tag="SFZ78_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8211168.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            15086..15751
                     /gene="dccR"
                     /locus_tag="SFZ78_000258"
     CDS             15086..15751
                     /gene="dccR"
                     /locus_tag="SFZ78_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG8211169.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            15744..16934
                     /gene="dccS"
                     /locus_tag="SFZ78_000259"
     CDS             15744..16934
                     /gene="dccS"
                     /locus_tag="SFZ78_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8211170.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGTTL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISILNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(16977..18614)
                     /gene="groL"
                     /locus_tag="SFZ78_000260"
     CDS             complement(16977..18614)
                     /gene="groL"
                     /locus_tag="SFZ78_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG8211171.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(18636..18896)
                     /gene="groES"
                     /locus_tag="SFZ78_000261"
     CDS             complement(18636..18896)
                     /gene="groES"
                     /locus_tag="SFZ78_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG8211172.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            19058..21598
                     /locus_tag="SFZ78_000262"
     CDS             19058..21598
                     /locus_tag="SFZ78_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211173.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNVRMYNYSPIALNLDAKNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKHNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITDDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKNTGNKVDKAVNKLLNKIF"
     gene            21607..22218
                     /locus_tag="SFZ78_000263"
     CDS             21607..22218
                     /locus_tag="SFZ78_000263"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG8211174.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLTAKHRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGILEKI
                     QKDENGVDFHITLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            22182..22862
                     /locus_tag="SFZ78_000264"
     CDS             22182..22862
                     /locus_tag="SFZ78_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG8211175.1"
                     /translation="MGRSGKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNTALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            22864..23067
                     /locus_tag="SFZ78_000265"
     CDS             22864..23067
                     /locus_tag="SFZ78_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211176.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEISEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(23064..24224)
                     /locus_tag="SFZ78_000266"
     CDS             complement(23064..24224)
                     /locus_tag="SFZ78_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8211177.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            24346..25071
                     /locus_tag="SFZ78_000267"
     CDS             24346..25071
                     /locus_tag="SFZ78_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG8211178.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            25074..26456
                     /locus_tag="SFZ78_000268"
     CDS             25074..26456
                     /locus_tag="SFZ78_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8211179.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            26460..27266
                     /locus_tag="SFZ78_000269"
     CDS             26460..27266
                     /locus_tag="SFZ78_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG8211180.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(27210..>28393)
                     /locus_tag="SFZ78_000270"
     CDS             complement(27210..>28393)
                     /locus_tag="SFZ78_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8211181.1"
                     /translation="FNILLEYNNFLNFKNQKHYLIDNALLTHQYIKYNKKNKKYWVLK
                     LQTENFTFYTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKEY
                     NPIISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFS
                     LIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFWI
                     FYLLCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKFN
                     NLINIILLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYGD
                     LLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMIV
                     I"
BASE COUNT         9703 a         3940 c         4480 g        10270 t
ORIGIN      
        1 aaggcattaa caaaggctat agctttttcc atgatctttt cttcttctcc gcctataact
       61 ccataatctc cagcgtgagg attaaaacct aaaagcccca tttttttaaa atgcgtttct
      121 ttgtaaaaat cttttaaaaa gatacttaaa tttttaaaag tgattttttt actcacctta
      181 gctaaaggta tatgttcgct aaaaagccct acaaaaagtt ctttgcaacc taacatcata
      241 atggcatttt ttttaaaaaa atcccttaaa gcatcggtgt gtcctttgta tttaagtcct
      301 gcatcttccc aagctttttt gtgtataggt agagtaagca aggcatgggc gtgtttttca
      361 tagacaaaat aacttgccgc cttaaaactt aaaaaaccat aaagtccact ttttgtatct
      421 atttctccgg ctttgatttc aaaattttca tccactttaa agcctaaagg aaggtagaaa
      481 gagtaaattt caagagaatt ttcttttttt ataaaattaa actcatagtc ttttccatct
      541 ttaaaagcta cgatttttgc attaaaaagt tttaaattta aaagttttga agctttatca
      601 agcaagcttt cgtggataaa ataaaaaggt gtgcagattt tgcttagttt ttcatgagaa
      661 cgcactaaaa tttcaagtcc tatgccgttt atatcgccta tactaatggc tagttttttc
      721 atcttttaat aagttctttc atttccaaaa tagcgttttg aagtcctgta aatacagatc
      781 ttgctacaat gctttgtcct atatttagct cgcaaatttc tttaattttt actacgggtt
      841 ttacattttt gtaatttaaa ccatgtcccg cggctacttt taagccaagt tctaggcctt
      901 ttttggcaca gagctctaaa ttttgtaatt ctttttcaaa ttgagcttgc aaggtttttt
      961 tatcttgatc aagttctttt aaggcaaaag cagtatgaga gatattacta aaaagtgcgt
     1021 tgtgcaaatt cgcataatgt cctgtatgaa gctctatgaa ttgggctttt aaaatttttg
     1081 atttttctat atcttctaaa ctaggattaa taaaaagtga aacttcaatg tttgcattgt
     1141 gaagtttttc tatgctttgt tttaatttag catgatttaa acaaagcccc ccttctgtag
     1201 taagctcttc tcttttttca ggcactaaag taacgcggtg gggtttgagt ttaagagcta
     1261 aatttaaaat ttcatcattt aaagcacatt ctaaattgac agggcttttg caaaatttta
     1321 taatattttc caagtcaaaa tcctgagcat gacggcgatc ttctcttaca tgcaaagtga
     1381 tttgatctcc gtgtctagct actataaaag cagcttctaa aagatcagga tcatttacca
     1441 ttctagcttg tcttaacact gcaatatgat cgatatttac acctaaaagc atatttttcc
     1501 tttagaactt ttttgctatt atactataaa atcaaataag gaaagtcatg ttaggtatag
     1561 atcttggttc aaatacttta agagcagtac aaatggacga aaaattaaat aaattaaaag
     1621 aatatgaatt tgttattggg gcagcgaaaa atctaaatca aagtggagaa atttctaaag
     1681 aagccataca aagattaaaa aatactttga gtattttagc taaagagcaa gatttaagca
     1741 aagcgagagc tgtagcgact gcagctttta gaaaggcaag caatacaaat gaaatttttg
     1801 cccatttaaa aaaagaattt gggattgatt ttaagcttat agatgccaaa agtgaagcta
     1861 agatcagtgt tttaggtatg caatcaggtt taagaaggct taaaatttgg ggagagtttg
     1921 catattgtga tttaggaggg gcttcttgtg agctttcttt tggaaaaagt tttaaaagtt
     1981 ttgattttgg tattattagt ttttatgaaa aaaattacca ttcttattat aaatcttgta
     2041 tttcttataa aaaattaata aaaaaatatc ctaaatttat cataaatatt aaagataaaa
     2101 aacttaaaat tcatttttta attgcaaatc cccatttaaa gcatttagct tttagggctt
     2161 ttgatgaggt ggctatgatt aaaaaggagc ttcgttcttt aggagttaaa acggtggttt
     2221 taaattccgg agttcctact acacttagcg tattaaaaca aaatataagc tatgaaaagt
     2281 atgaagcaag tagagtaaat ggcaaaaaac tttaccataa ggatttttta aattatgcta
     2341 ttaaactttt tcatatggaa gaaaaaaagg ctataaaaga agtaggtgcg atgagaaaaa
     2401 attatttgag tgcaggttgt ttgctgtttt atgctttgtt tgataaacat aaacttctag
     2461 tcattgatga gggtttaagg gagggggttt gtttagcgag tatgaaaaat ataaaatttt
     2521 agtttttttg aaattcgaaa aaatgaaatt tttcatcaaa attaaaaaat aaaattttag
     2581 cttgagataa aaaactttcg taagttttaa tgtttttatt ttttgtgtat tctaataaat
     2641 cttcaaaacc aaaatccatg aaagcaagac tttgtttttt aaaagctaaa ggtttaaaat
     2701 catattcttt gatgagtttt tgaagatgag taaaattgac attataagtt agatcgcttt
     2761 tgccgaaaaa atcttttaaa gatacttcaa aagggctaaa aacttcgtgc ttttgataga
     2821 ttcttaagct aaaactttgt ggatttaaag ttccatagtc aaatcccgca aatataaatc
     2881 tctcacaagt ttggtttaaa tctttaaaaa aattttcaag ctctaaactg agttcacctt
     2941 ttttaagatt taaagctttg cattttgtga ttaaattttc atccatattt ttaaaaataa
     3001 gtttaaaatt ttctacaaat gccattttat catgatctat aagttcgcaa gcaaaactat
     3061 caaaaagttc attgcaaaag aaaaaagcgt tcttaaaatg gcattcttta agactatttt
     3121 tgtgagtaaa ttccactcct tctaaagtct ttttttgtaa agttcttaat ttttcatgcg
     3181 gttctatgac gaaaaaagaa atttgagaaa aaatttcagg tcttaattca agcaaagcgg
     3241 ctaaaaaatc acgacttaaa tatccttcat tagcgcctat ttctacaagt tctaaaggga
     3301 gttgtaaaat ttttttatct attaaattta aaaaatgctt ggctaaaagt gtgccaaaaa
     3361 gatttcctac gcttacagca gtaaaaaaat ctccgttttt tcctatactt acagcatttt
     3421 tataatagct ttcatggagc caagcatgga aaaagtcact aaatttcatt gaaaaatagc
     3481 attaaatttg gatacaaaat ccaaaggatc aacttgtttg cctccagcta aaattccaaa
     3541 atgcaaatgc ggcccactta ccctacctgt agccccacta agtcctataa gttcaccttt
     3601 ttttatcttt tgtcctattt taacatcgat tttagaaaga tgataatatt gtgaataaat
     3661 tccaaaacca tgatcaatga ctactgaatt tcctgcgaaa taacgatctt ttgcaatttt
     3721 tactacacct gaattggctg cataaatagg tgttcctatg gcagctctaa agtccgttcc
     3781 gctatgataa cttgctactt tttcattaaa agttcttgct ttgccaaaat cacttgtgat
     3841 aaaagaattt aaaggtatat taaaagcacc gttaaataaa gcttttggag tataagaact
     3901 ataaatcgca ttggcttctt ttaattcttt agtgatgcgt tcttgtatgg tttttggtgg
     3961 aaaaatcttt ttgttttcaa cttgcaattt ttcactttta taattacctt ctaaagtttt
     4021 tatgaaaatt tcttcttttt tatctttata aaatgcgata agttttgtat tttgcggggg
     4081 atttttgtaa ggtaaggaaa aaatagctag aactttttct tgatttttag gatgtgtaaa
     4141 agtgggaata tttttaccat tattttttaa agataaaaaa tctttcttat ctagctccaa
     4201 aaataaagct tgacctttga tgagttctaa attttgagct ccaaaaagcc aaagagtaag
     4261 gcttaaaaaa agccataagg ctttcataag cttaactctt taagatcggc gatttttaaa
     4321 aactccgcat aaatttcata aaccaaagct tggcgattat ttttaagttt ttcatcttca
     4381 gcattaatca tcacttgatt aaaaaactca tcaataaaag gcttaagtgc aaaaagattt
     4441 tcaagttttt cttgtaaaga gttggcttta gttttttctt gaaaagcttt gtaaagttta
     4501 ctttctgctt cttgaacaaa aagactttca tcaactttat gaggattttt agtggcgata
     4561 ttggctagtc ttttaaaggt tgcaaaattt tcattaaaat tatctttttt gctaagtttt
     4621 ataagagcat ttacgctttg attgatatgg ataagatctg tattttgtga gcttaaaacc
     4681 gcttttacaa aagaagcatt gactgtataa aaagtataaa gtctttcaaa aataaaatct
     4741 tttaaaattt gcatatcaaa gcttttataa tgatttgaaa gtttttctaa taaaatttgg
     4801 atatcaaatt ttttatttaa atttaaagca attttaatga tcccattggc agctcttctt
     4861 aaggcataag gatcctttgt tccgcttgga atttttccta tgctaaaaag tcctataagg
     4921 gtatcaagct tgtttgcaag ggctactatg cttgaaaatt ctgtacttgg aagtggagct
     4981 tgttcggaat taggaagata ttgttctttg atggctaagc aaatttgata atctaagccc
     5041 attttttgcg cataataact tcccataatg ccttgcaaat cagtaaattc ataaaccatt
     5101 tgtgtggcta agtctgcttt ggcgtatttt agtgctgtgc tgatattttc gattttatca
     5161 ttatggagca tttgacataa aatttcagca attttaatct ctcttaaact tttatcttgc
     5221 attgtgccta aaccttcaag ataggtcatt ttggcaagtt tttcgggttt taagccattt
     5281 tgtaaatcat tttgataaaa aaacattgca tcgctaagtc ttgcacgcaa aactctttca
     5341 tttccatgta tgatttttga ataatcctta catactgcat tacttactac tataaaatga
     5401 ttacttaagc ctttgtcgtt aaaaactgca aaataacgtt gattttctct cattgaagtg
     5461 atgattactt cgctaggaat ttctaaaaat tcttcttcaa aacttcctaa aagtgcatta
     5521 ggatattctg tgatagcaac tacttcagct aaaagctctt catcttctcc aatttgtata
     5581 tttttttgac tttctatgag tttaaattgc tcaagtattt tttcctttct tttgattgga
     5641 tcaaggatga tatagttttt ttctagtagt tcaaaatatt cttttgcatt gttaaaatct
     5701 tgcaaatcat aacttacgct tctgtgaatg aaagtttttt tagtactttt tactccatag
     5761 ctttgaaaat taacaagttc atcatttaaa atgcaagcta tagaacggat cgcacggatg
     5821 aattcaaaag aatttgcacc ccagcgcata cttttgccaa aactaagact ttttagaaat
     5881 ttttctacca tttctcctaa aatttcttga ctttgcaaac ctttaatagc tttttgatgg
     5941 tacaaaactt ccttgccttt gatttcttta aaagagagtt cattttcact gatccttgct
     6001 ttttgcagga agctttgtcc cgcaggagtt aaaactccat ctttataagc aacattttta
     6061 ggtgctccta taaattcagc aaagctatct tcttgtttgt ctgcaaaatt ttcatgaaaa
     6121 aaaactaaac gacgcggagt ataataaaat ttaaaatcac ttaccaagcg gtattcttct
     6181 aaaacattgt tccatttttt ttctatatta gctaattctt ttagcaaagg aatagcaggt
     6241 aattcttctg taccaatttc tattaataat tcactcataa tttactcttt ttaaaattta
     6301 tttctaattt taactaaaat ttcattaaaa aacttataaa tacttttgca aaaagccttt
     6361 aagttcacta gcgttgctaa attcattttc ttttaaattt ttttgatacc atttggcatg
     6421 aaaataaggc aaattagcat ttttagcaca ttctttatct ttttgactat ctcctataaa
     6481 aacgcttgtt ttatatggag cctcgctttt taaaagctct agcatcatag gatgaggttt
     6541 gggttctatg cccaagttta cgcctaaaat tttatcaaaa taaggaatga tatcgtgttt
     6601 tttaagtatg tttgaaagtg agctttgtgg ggcgttagta gcaatagcta aaaaacaatt
     6661 tttgcttttt aaaaattcta aaagttcttt tactccttca aaaagcacca cgctttgttc
     6721 atagtgcttg acaaaatatt tttcatagcc ttctttaaaa ttagaatgat ggaaattttc
     6781 tatattataa agttcttttg cccagtcaat attgggagta ttgatggttt gcataatgat
     6841 ttctcttgaa agtggggcta gatttaaatc ctgtcttatt tcattgactg cacaagaaat
     6901 ggcatttgca ctatcgatta aagttccatc catatcaaaa aatacattaa tcattcataa
     6961 tcctttaaat aatttttatg tttttctttt ttcccacctt gttttttttg cttatctaaa
     7021 gcattggcaa gatttaaaag ctcgtttttt tctttggaaa aatctaaaca agcattgaca
     7081 aaaaattcaa gattttttgc ataggttgag ttaagattta ccgcgggatt tttttcaaaa
     7141 aatttagcat tttttaacat tctttcttca aatttagttt tatcaaaatc ttctttttta
     7201 agtgcagata tagcgccatt gaaaaatttt tcaagatttc ttaggtattt tacgcgtaag
     7261 gctttttctt cattttttgt caaaattctt ccttaggtat ttttgtgaat gcggcattct
     7321 agcgcttctt gaactaaatt tctagcgatt actttttcag agcgaatgat gcgtatattt
     7381 tcatctatgc tagaaaaaag catctttttt aaagttccat ttacatgaat gatggtgtct
     7441 ataggttttg gataattagc tagcacttga cataaaattt caagtttggc ttcatttgta
     7501 actgtgataa tagctacggc acattcttct atattggcaa tttttaaggt ttcttcttga
     7561 gcagcattgg caaaaacgac attttcacct cgactaactc caagttctac taaatttaaa
     7621 tcactttcta aaacaagata aggtacgcct gtgtttttga ttttttgtac gacttcttgt
     7681 cctaagcgtc cgtagccaaa aacaacaaga tgatttttaa gcttgatatt gctgtcaata
     7741 ttttgcacag cgttggtatt aagtgctata tcttctacaa cattggtaat ttttcttata
     7801 ttgtttaaaa taaaaggcgt gataatcatg gttaaaatag aaacaacaat taaaatttgt
     7861 gaagttttga tatcaagcat attttttgct tgtaaaagag aaaaaattgc tagggcgaat
     7921 tcgccaattt gagctatggc aaaagctgtt ttaagcgcta ctcttttttt ggtgtaaaga
     7981 aataaaaagc caaaaactat gccaaatttt aaagccatta caagaagggt taaaactatg
     8041 attaaaaacc aattttgtgc cactacatca agttgaattt gcatgcctac agttatgaaa
     8101 aaaagcccta aaagcaaatc tctaaatggg atcaagtccg cttctatttt gtgtttatat
     8161 tttgtttctg ctatcaaagc acctgctata aaagcaccca aagaataaga aaatccaaaa
     8221 taatttgcta aaaaacttgc tccaataacc ataaataaaa cagtactaat aaaaatttcc
     8281 tgagaagaag tgtggataat gagtctaaaa attctatcca ctagatattt acctatgaaa
     8341 aataataaag tgattaaaat aagtgctgaa attaaagtgg taaaaaggag tttttctatg
     8401 ttttgattgt tggatgaaaa aatatctaca agcaaaagca aaggaataac ggctatatct
     8461 tgaaaaagca aaattcccaa tgcttttcta ccatattgct cattgatatc gccattatca
     8521 tttaaaattt taagcaccac tgcggttgaa gaaagcgcta gtgcaaagcc tactatagta
     8581 gcgcttttat ctccaagtcc taaaattcct atagcaagta acataaaaac aaagccacaa
     8641 gtaagcatct gcaaagagcc gtttaaaaaa acttcttgtt tcattgccat taaatgctta
     8701 aaagaaaatt caagccctat ggtaaacatt aaaaacacta taccaaattc ggctatatga
     8761 gtgatttcgc ctttgccact taaatgataa atttcagaaa tgatttctcc agcagctata
     8821 tatccaatga tagttggaat ttcaaatttt ttaaatatga catttaaaac tatagctata
     8881 gcaacggtga ttaaaaaaat ttctaaaaaa ttatccatta ttttttattt tttctcataa
     8941 aaaatcaaat caaagctatt tttatgctta acaacggctt tactagccgc ttctttattt
     9001 tgttgtttgc ttaattctaa gcgtagttca tcaattaaat tttcaaattc gtgaagttgg
     9061 tttttcaatt ttaagataac atctactcca gcaagattga ttcccatgtc tcttgttaaa
     9121 cgcaatataa gtttaatacg gtcaatatct ctttgagaat aaagtcttat tttgccatcg
     9181 gttctacttg gctctatcaa tccttctctt tcgtattgcc ttaaggtttg tggatgtatg
     9241 cttaaaactt tagccacaac actgattaaa tatacaggtt catcataatg ctgttccata
     9301 ttttattcct ttctttaagg taatttttct tttaagagtt ctataaattt ttcatcaagg
     9361 gtatctaaat ttggcaaaac aacatttaaa atcaaataca tatccccata aatatcactt
     9421 tttctatttt gcacaccata accttttaaa cgaatttttt ggttattttt tgaattaggc
     9481 gttatgttaa ttgtcgcttc ttccttgcct tctttgagtg tttttatatt tatttttcca
     9541 ccaaaaagtg cagtttttaa agaaatatca actttttgat ataaatcatc atcttctctt
     9601 gtgtaaatag gactttcttc tatttttaca ataatgatta aatcacctct agctccattt
     9661 ctgctttgtt ttcctttaga gcgaattctt agtttctcac cttcttttat accgtgtgga
     9721 attttaaatt taatggtttc gccttgaaaa ttaaaactat gttccccgcc tttaacagct
     9781 ttttcgaaag gaatgtgaag ctctagattg ctgtctaaaa tttcttcttc aaaacctcca
     9841 aatcctccaa aaccactgct aaagcctttt gaagaaaagc cgttaaaacc ccctcttgag
     9901 cgtccaccaa agcctcctcc aaagagatct tttaaaatat cgtccaaatt taccccacca
     9961 gtatttcttg aaaaatcatg aaaactttgt ccaccaaaca tagaatcgcc gtattggtca
    10021 tactgagctc gttttttttc gtcacttaaa atttcataag cagcattaat ttctttaaat
    10081 ttttcttcag cacctttttc tttgttgata tcaggatgat attttctagc taggcgacgg
    10141 taagcttttt ttatttcatc tgcactagcg tttttgctaa ctccaagagt ttcgtataaa
    10201 ctattcatgt tatatttcct taaaaatttt tacttgatta ttatagagga ttaaattata
    10261 acataaactt tagcctaagt caatcaagtt ttataaattt ttatcactca aggttttatt
    10321 tacaattttg taaattttcg gttttatact atgaagacag taaaatattt tacgagataa
    10381 tttatcttta agaacaaaag gaaataaaat gaaaaagatt tttttatcat taagtttagc
    10441 aagtgcttta tttgctgcaa gtattaattt taacgaatcg actgcaacgg ctaatcgtgt
    10501 gaatcctgct gctggaaatg cagtgctttc ttatcatgat tctattaaag atgcaaaaaa
    10561 atcagtggtt aatatttcca cctcaaaaac tattacaaga gcaaatcgtc caagcccttt
    10621 ggatgatttt tttaatgatc cttattttaa acaatttttt gattttgatt ttcctcaaag
    10681 aaaaggaaaa aatgataaag aagtggtgag ttctttggga tcaggggtga ttatttcaaa
    10741 aaatggttat atagtaacaa ataatcacgt tgtagatgat gctgatacga ttacagtgaa
    10801 tttaccagga agcgacatag aatataaagc aaaacttata ggtaaagatc caaaaacaga
    10861 tttggctgtt ataaaaatag aggctaataa tctttcagct attactttta caaattctga
    10921 tgatttaatg gaaggagatg ttgtttttgc acttggaaat ccttttggag ttggttttag
    10981 tgttacaagt gggataatat ctgctttaaa taaagacaat ataggtttaa atcaatatga
    11041 aaattttata caaacagatg cttctatcaa tccaggaaat tcaggtggag ctttggtgga
    11101 tagtcgcgga tatttagtag gtattaattc agctattctt tctcgtggtg gtggaaataa
    11161 cggcataggt tttgccatac cttcaaatat ggttaaagat atagctaaaa aacttattga
    11221 aaaaggcaag attgatagag gatttttagg tgtgactatt ttagctttgc aaggtgatac
    11281 taaaaaagct tacaaaaatc aagaaggagc tttaatcact gatgttcaaa aaggttcaag
    11341 tgctgatgaa gcagggctta agcgtggaga tttagttact aaagttaatg ataaggttat
    11401 aaaaagtcct attgatctta aaaattatat aggaacttta gagattggtc aaaaaatttc
    11461 attaagttac gaaagagatg gagaaaataa gcaagcaagt tttattctta aaggtgaaaa
    11521 agaaaatcct aaaggcgtac aaagcgattt gattgatggt ttgagtttga gaaatttaga
    11581 tccaagactt aaggatcgtt tgcaaattcc aaaagatgtt aatggtgttt tggttgatag
    11641 tgttaaagaa aagagcaaag gaaaaaattc tggtttccaa gagggtgata ttatcatagg
    11701 tgttggacaa agtgaaatta aaaatttaaa agatttagaa caagctttaa aacaagttaa
    11761 taaaaaagaa tttaccaaag tttgggtata tcgcaatggt tttgcgactt tgcttgtgct
    11821 taaataaaaa taacggaagg attttccttt cgttataaat tttagtttaa aattaaaatt
    11881 aagtttaaaa taaaggaaaa ctatgacaaa tattcttatg atagaagatg atttagaatt
    11941 agcagaaatt acagctgaat atttggaaaa atttgatatg aaagttgata tagctcatga
    12001 accttatata ggtctttcta agcttgcatt aaaagaatat cagcttatca ttttagacct
    12061 ttctttgcca gggcttgatg ggcttgaagt gtgtgaagag attcgtaaaa agtatgatac
    12121 gcctattatt gtttcaagcg caagacatga tattacagat aaggttaatg ctttagagct
    12181 tggagcagat gattacctac caaaacctta taatccaaaa gaattacaag cacgtattaa
    12241 aagtcattta agacgtattt caaatacaaa aagcgccata gcaaaaagcg taaaagatct
    12301 tgtttatgat caatataagc atattattac catgaaagga caagagctta ctttaactaa
    12361 tgctgaattt gatattttaa gctatttgat taaaaaagag ggtggagtgg taagtcgtga
    12421 agagcttgtt tataattgtt cttctattag tgaggattct agtaataaaa gtatagatgt
    12481 tattatcagt agaattcgtc aaaagatggg agatgatcca aaaactccaa aatatattca
    12541 ctctatacgt ggaataggtt ataagcttac tcaatgaata aatcttcgat tttttatact
    12601 ataactttta tttttatttt tgctggggtt agtgttatac ttggcttttt gtggcttata
    12661 gaatacgatc agcaaaatta tactagagaa ttaaacacaa aatattcttt gatagctaat
    12721 gcaaggctct taaattttgc aggagttatc agtgaaaaag aatttgaaga gcagacaaaa
    12781 aattataata aaatggatga gataacagaa gcaaagcaga tccgtaaaat tctttttaga
    12841 ggtgatgttt tagctagggt tgaggttaac aatggcttaa tcgagattat ttcttataat
    12901 agacaggtgt atttaaatat tatttatgat ggaaaggttt atctttataa ggatcaagat
    12961 tatcaaacct ataggtattt tattatcaaa gctatagctg tagctgtgat ttgtattctt
    13021 gtattgcttt atatttatat atttaaaaaa ttaaaaccac ttaaaagact taaaaaacaa
    13081 attgataaat ttgcccaagg aaagcttggt gatatagaag atgtaagcac tggggtggat
    13141 gaaatttcac aagtaagtga agctttttat caagctattg ttcaaattcg aaagttaaac
    13201 caatctcgtc agtttttttt aagaaatatt atgcatgaac tcaaaactcc tattactaaa
    13261 gggctcttaa ctttagaaat gatagaagat aataaatata aagagcgctt aaatggggtt
    13321 tttactagac ttgaaatttt aattaatgaa tttgctgcta ttgagcaaat tacttcaggg
    13381 gctgctttta taaatagaaa aaaatacaat attttagatg ttttagatga agccaaagaa
    13441 attgcaatgc gagatgatag caatatacgt atttttatgg aagaaagttt ttttgtaaat
    13501 gtggatttta aactttttac tacggcgatt aaaaatatga tagataatgg tattaaacat
    13561 tctgaagatg ggtttgtgca aattgatatt atagatgatt atatttgttt taaaaatcgt
    13621 ggtcctgagc ttaacaatac tttagaatac tatactcaag cttttactca aggatcaaaa
    13681 caaaaatcaa gttttggatt agggctttat attgtaaata ctattttaga aacacatgga
    13741 atgaagcttg attatttata tgaagatggg gtaaatttgt tttattttag aaatttaaaa
    13801 agtgttattg ttaaggagta aattaatttt tttacataaa aaatgcattt ttgtgaaaaa
    13861 acccttgaca aagtttttta atttcactat aatcacattt tacttttaaa tattccggat
    13921 tagctcagcg gtagagtagt cggctgttaa ccgattggtc gtaggttcga atcctacatc
    13981 cggagccact tttttaactc catttttaat attcataaat gtattttaat ataaaaaatt
    14041 aataagtctt tatcacaaaa aaaattgtga taaagttttt tattttgttt gtttaagatt
    14101 tttgacaatt ttatctattt ttttacttgc cttttgataa tccccatctt taagttcttc
    14161 tagggcatta acagcaaaag aaaaatcttc aacttcatta agataagcct ctatggcttc
    14221 ttttactatg gttgattttg gtttagaaag atttttactt aaattatcca aacgctcctt
    14281 aagctctaaa ggcattctaa aagaataagt ttttacattg cgtttcattt tatcctcctt
    14341 aagaatattt tttgtaaaat tttatagctt gtttacaagt tttacaagta aatttatgac
    14401 cttgtaattc tattttttga tgaatgctat aaggaacatc gtgaatttta ccaggacaat
    14461 tacaggtata aagataaaat tgtggatgct cattatcttc atcttctgct gcttcaaagc
    14521 taacatcgcc accatcatct gtagacaaag aagaacttct ccatttttca actttcatgt
    14581 cttcatatag tatgtgttct aaaagccact ttttagccac tatataaagt ttttctttaa
    14641 gatcattggt tgatttgata tctttgatta aattaatcat ggtttggatg atttctttat
    14701 gtatttttcg atgttcttct aaatttggat agcctattag ctgcatgtat ttttcttcat
    14761 cattaaagtg atctttcata taattaaaaa attcagccaa aagttctttg acttcatttt
    14821 tacttacaga tctatctgat acaacttcaa cttttgcagc aagtttaaaa agctttttat
    14881 gctgctcatc aattttagca ttgtgcacac tatagctgtt atcccatttt ggaagcattt
    14941 taactcctta aggaaaaatt tatttgtatg aaaggattat agataaaaat aaattaaata
    15001 aaaatgaaat tttattaaat aattgataag aattttgata caatgatata tatttaagag
    15061 atttgaagtt agaaagattt aaattatggc tgctaaaatt ttacttttag aagatgattt
    15121 gagcttgagt gagatcattg aagagttttt aaacgatgag ggatatgaag tatttttatg
    15181 cgataatgcg caagaagctt tagatatggc ttatgaaaga tattttgatc tttggatttt
    15241 agatgtaaaa gttcctttag gagatggatt ttcattactt aaagaattaa gaaaaagcgg
    15301 aaagcaaact ccagcaattt tcatgacttc tttaaacaca acaaacgatt taaaacaagg
    15361 ctttgacgca ggttgtgatg attatataaa aaaacctttt gaacttgccg agttatctat
    15421 cagggttaaa gctttgctta aaagagcttt ttcacataaa aatgaagatt ttgaagattt
    15481 aggagatgga tttagatttg aatttactac acaaattctt taccataata ataaagcctt
    15541 gactttaccg agtaaagaaa ttaagctttt gtctttatta cttaaaaata aaaacaactt
    15601 tttaagtaca gagagaattt ttgaagaact ctgggattat gatgaggagc ctagtgagct
    15661 aagtttaagg gcttatgtga aaaatttacg taaaatttta ggaaaagaaa aaattataaa
    15721 tcaaagaggc aggggatatt gctatggcta aaaaagtcat taggcaaatt ttattaatct
    15781 acctaacaac tacaggtatt tttttaacga ttttttttgc attatggtat caaaaattat
    15841 atgaagaatt agttgtttta aagggtacca ctttgagaga aaatcataga aacattgtta
    15901 taagcatctt aaattctcgt tttaccccta tagatataag tgcaaaaaat attgctcaaa
    15961 gcacagcact aaaatttgct atatttgatg ctaaaaagat tgtttttagt aatatagatt
    16021 ttgatttaag aaaggcaaag atagagctta aaggtagagg tatttgtgat aataaggttt
    16081 ttttccttgc tcctatgagt gcagatcatt attttttaag acatgctagc aatgaagaag
    16141 taaatactaa cgatggtttg caaattttaa tacagggtga agatgttggc aaagatcttt
    16201 tttggattag aacgaaagtt tttagttttg ctattatggc tttttgcata ttgggtttaa
    16261 tatcttatat tttagtaaaa attgctctaa agcctttgga ggataaaatc agcatactaa
    16321 atcgttttat taaagattca actcatgaac tcaatacccc attaagtgtt attttgatga
    16381 gtatagaaca acttgagcat caaaatttag gagataatac taaatttaca aggattaagc
    16441 ttgctgcaaa aagtttgtct caagtgtact ctgatcttgt tttttataat ttccctaata
    16501 ccttagaaac agaaaaacaa aaatttgatt taagaatact acttgaagaa agattggaat
    16561 attttaaagt attttttgag caaaaaaaaa ttacactaaa gcttgattta aatcaagcaa
    16621 atatttttgc tcctaaaagt caaatttcta aattgattga taatcttata agcaatgcta
    16681 ttaaatacaa taaaaaaggt ggagtaattt ctataatttt aaaagccaat tttttaagta
    16741 ttgcggatac aggttgtgga atttcaaagt caaatttaaa tcatattttt gatagatata
    16801 caagatttaa taccgatcaa ggaggatttg gtatagggct ttctttggta aaaaaagttt
    16861 gtgatgataa tgatattaag attatttgcg aatctgtaga aaatcaaggg agtgttttta
    16921 aattaaattg gtaatcagca aggaaaatcc ttgctgataa gaggttagag tagatattac
    16981 atcattccgc ccatgccacc cattcctccc ataccgctca tatctggcat agtaggttta
    17041 tcttctttaa tttcactaat tgttgcttct gtggttaaaa gcatactagc tacagaaact
    17101 gcattgagta aagctactct ttctacttta acaggatcga taattccact ttcaagcata
    17161 ttaacatatt caccttttgc agcatcaaat cctgtgtttt catctttagc attttctacg
    17221 ctatttacaa ccacacctgc atcaaatcct gcattttcag caatttgtct taaaggtgct
    17281 cttaaagctc tttcaacgat agctgcgcca attgcttcat caccctgtaa atcaagtttg
    17341 attttagctt ttgctttgat aagcgctgca ccaccaccga ttactatacc ttcttcaact
    17401 gctgctttag tagcgcttaa agcatcgtca acgcgatctt ttttctcttt catttcagtt
    17461 tcagttgctg cacctacttt aataactgca acaccaccac ttaattttgc aagtctttct
    17521 tgtaattttt ctctgtcata atctgaagtt gtttcagcaa tttgtgcttt gatttgattg
    17581 actctcgcat caatatttgc tttttcgcct gcaccattta ctatggttgt attgtcttta
    17641 tcgatgatta cactagaagc ttgtccaaga tcttgtatag tcgcactttc aagagttctt
    17701 ccaagttctt cagaaatcac ttctccacct gttaaaatcg ctatatcttc aagcatagct
    17761 tttcttctat cgccaaaacc tggagctttc actgctgaaa tattaagaac accgcgaagt
    17821 ttatttacaa ccaaagttgc aagcgcttca ccttcaatat cttcagcgat aattaaaagt
    17881 ggtttgcctg ttttttgaat ttgttctaaa accggtaata aatcttttaa atttgtaatt
    17941 tttttatcaa aaagcaggat ataagggctt gaaagctcta ctgtcatttt ttctgcatta
    18001 gtgataaaat aagggcttaa ataacctctg tcaaattgca taccttcaac tacatttaat
    18061 tcatcattga ttgattttgc ctcttcaaca gtgataacac catctttgcc cactttttcc
    18121 atagcatcag cgattaaatt tccgattttt tcatcagagt tggctgaaat tgtagcaact
    18181 tgtgcaattt cttttttatc ttttacttcg cgagaaagtt ttttaagttc tgctactata
    18241 gcttcgcaag ctttatccat accgcgtttt acttcgatag gatttgcacc tgctgtgata
    18301 tttcttaaac cttctttgaa aattgcatga gctaaaaccg ttgcagtagt tgttccatcg
    18361 cctgcttgat cagctgtttt actcgctact tctcttacga gtgaagcacc catattttca
    18421 agactatctt taagctctac ttctttagca acacttacgc catctttagt aatgcttgga
    18481 gcaccaaagc ttttttggat taaaacattg cgtcctcttg gccccatagt tacttttacc
    18541 gcgtcattaa gttttttaac gccctcataa agtttatttc ttgcttcatc tgaaaaaata
    18601 atttcttttg ccatttttta tccttatttt ataaattatt ttaaaattcc taagatatca
    18661 tctaaattta aaactaaata ttcattatta tcaagtttaa tttctgttcc accgtattta
    18721 gcaaacacga ttttatcacc atttgcaata tcagtgattt ctttacttac tgctactact
    18781 tcacccatta aaggcttttc tttagcatta tctggtataa ttatgcctga ggctgttgtt
    18841 ttagtttctt ctacgcgttt gactagaaca cgctttccta aaggttgaaa attcattttt
    18901 gtccatcctt aaaaatattg attttagcac tcttttattt agagtgataa tatcatacta
    18961 taaaaaatga attttgtcaa tactttaaat taaaatattt ataaaagttt agttttatag
    19021 actaaagtta ttttataaaa taaactaaag gataaaaatg aaaaagattt tttatggagt
    19081 tatagctttt gttgttgtgc ttttgattgc tatttatacc atacttttca caagttttgg
    19141 taataatata gtggcaaata tagcgcaaaa aaagatcaaa gaaagtgcgg gattagatgt
    19201 aaatatcacg cattttaatt tacgtttttc aagccttgaa ttgcaagcaa atatcgcaaa
    19261 tatggcagat tttaatcttc agggagcttt gagtcctttt aagcttggat ttgatcttga
    19321 ctatcttatt tctttaaagc aaaattatgc taaaaattta ggtttaaatt taaatcaaaa
    19381 cctttctttt ggcggtaaaa ttcaaggcaa ggcaagtgat tttactttag atggaagggg
    19441 ttacttacta ggttcaaatg tacttttaaa tgtgagaatg tataattaca gccctatcgc
    19501 tttaaattta gatgcaaaaa atcttaagat agaagaaata cttcatcttt tatcttatcc
    19561 tagttatgct aaaggttttt taaatgctca ggcaaaaatt tcagcacaga atttaaaacc
    19621 tgatggaaat attatcataa aacttgatac aagctatata aactacgagg cgataaaaaa
    19681 agatttttct ttagacttgc ctttaaattc taatcctaaa gcagaaattt tagccaatgt
    19741 taaagaagat aagatttatg ctgtaagtaa aatttacaat gattatctta acttacaaac
    19801 ccaaaaaact ctttatgata tgagtaagaa tattttaagt actgatttta atttaaatat
    19861 tccttctctt gcaaagcttg aaaaacttac aaaaactaga ttaaatggta gtttgggcgt
    19921 gataggcgaa acaagtgttg taaataatgc cttatcaagt ttaaatgctc aagttatcgg
    19981 acttggtgga gaggtaaagg caagtttgaa acataataaa atttttgcag atattaatga
    20041 agcaagtttg gaaaaattat tagctcttgc aggatatgga gctttagttt ctggaaattt
    20101 aaatgctaaa cttttaaatg cggatttgga tttttctaat ttcgatcttg aggcaaaaat
    20161 aaacaatgca aagattaaca ccaatgagct taaaaaaatt gctaaaatag aacttccaaa
    20221 tacaattttt agtcttgatg ctaaagcaaa tgcaaaaaat agtaatattt cttacaatgc
    20281 tttacttgct tcaaatttac ttaatatcaa aaaacttcaa ggaacttata atttaaaaaa
    20341 tagtgagtta aatacagatt taaatgcttt tattgatgat ttgtctcagt ttagtgctat
    20401 agcgggacaa aaattacaag gtaaggcaga tcttaatgca aaagctcata ttataggtac
    20461 tcaaatacaa aatttaaatg caaatgcaaa tttggcagat ggcgtaatca aagctgattc
    20521 aaatggtaaa aaacttgatt tgaacattga taaacttgat ttatctaaac tttttgttat
    20581 agcaggtatg ccaaattatg ccagtggggt tgttaatgca aaagttaatt tagataatat
    20641 cgattttaac aaccttaatg gtaaagcaaa tttagaggct aaaggcattt taaatgctgc
    20701 aactttaagt aaaattttaa ataaaaattt tccaaacaat acaagttatg atttaaatac
    20761 caaaattaat tttaaaaaca atatcgctca atttgattct gttttaaatt catctttagc
    20821 tgatcttaca aaactacaag gaagttttga tataagtaag atgcttttaa attcggattt
    20881 taatttaaag ataaatgatt tttcaaaact aggctttttg ttagatagaa aacttaaagg
    20941 taaggcagaa tttaatggaa aggtaggttt tgataagagt ttaaattttg ttgtaaatag
    21001 tccaaattta tttgaaggaa aacttcaaag cacatttaaa gataaccttt tacttgctga
    21061 tttaaacgga gtggatttaa gtagtctagc tcagggtttg gattttatgg atatttatca
    21121 aggtaaggcg gacatgaagg caaattacaa tcttttaagc gaagaaggcg aggttaattt
    21181 ggatatgaaa gagggtaaat taaaaccaaa tcttattacc aatgctttaa aaattttaac
    21241 attaaaagat attacagatg atgtttatcg tactgctaat gctaaagctt tgattaaaaa
    21301 agaaaatatc aagcttgatc ttaatatgca agcagatcgt tcttatattt tagtacaatc
    21361 aggagcttta aattctaaaa gtggagcttt aaatttgcct tttgatatta aactcgatag
    21421 agctaatttt aaaggaagta ttacaggaac tacagaaaat cctaaagtaa atttaaatgc
    21481 aggaagtgtt ttaaattcta ttaaaaatgt agtaggtggc ggcgtgagtg atggtgctaa
    21541 aaatacaggc aataaagtgg ataaagcggt aaataaatta ttaaataaga ttttctaagg
    21601 taaaaaatgt ttaatggact cataagagaa attgccaaag ttcaatctta tcaaaacaat
    21661 actttaagtt taacagctaa gcatcgtcca aatcttggcg atagtatagc tgtaaatgga
    21721 gcttgtttga gtgtgacaaa actttatgag ggaggttttg aagtggaact ttctcgcgaa
    21781 agtcgcactc atatagctat agagaattta aaagataaag ttcatataga acctgcttta
    21841 agatatggcg atagaatcga tggacatctt atgcaagggc atattgattt tattggtata
    21901 cttgaaaaga ttcaaaagga tgaaaatgga gtggattttc atataacttt acctaaagaa
    21961 gctatgaaat ttatggcaga aaaaggaagt atagctgttg atggggtaag ccttactatc
    22021 aatgaaattt taaaaaatgg tattaggctt actattattc ctattacttt taaagaaacg
    22081 ctttttaagg actatcaagt aggtagaaaa ataaatatag aaagcgattt gcttgctcgt
    22141 tatatttatg cacaattaca aggtaaaaac aaaggattat catgggaaga agtggaaaga
    22201 atttcttatc tttattagaa aatgataaag tcggtatttt ttgtgctttt gataaggatt
    22261 ataatgtttt tagggctaaa attcataatg agaatttatt ttctcattta ggttttaaag
    22321 atattgaaaa atgtgttttt atggatcaaa ttcactctca taaagttatc atttatgatg
    22381 aaaatttaaa aaatctcagt tgtgatggac ttataagtaa agaaaaaaat actgctcttt
    22441 gtgtcttaag tgcggattgt ctgcctttga tcttatatca tgaaagtggc attatagcag
    22501 ctttgcattc aggtagaaaa ggaagctttg aaaatatcct aaaagaatgc gttgatcaaa
    22561 ttactatgca aaattcacat ttagataaga ataaatttca tctttttatt ttacctggaa
    22621 tttgtgctaa aaattatgaa atagatggag aaattttaga atttgctaaa aaagaattta
    22681 aagaatttgt tcaagataat aaacttgatt taaaagcctt ggtaaaattt caagctcaaa
    22741 atttaggcat tgaaaatatt aaagattgtg gaatttgtag ttttgatgat gagagttttt
    22801 tttcttatcg tcgcgataaa acgcctaagc gttttgtgag cgtggtttat ttaaaggatt
    22861 aaaatgtatg aaagaaaaga tttaagagtg ttaaaaatca ttcaaaaagc tagagaattt
    22921 ggcgatgggg atttgttaaa tgaagctttg gtgaaacaat taattgatgc agatttttgt
    22981 gaaattagtg aaaaagaaaa agaagagctt gcaactcttc taaattcttt aatcaatgca
    23041 aaagataaag cgttgttgag taattaaaat tctatatagt tttcaaaatc ttcttctttt
    23101 gggggattag gttgattcga ggctagggct tctttaacaa cctgctcgta tccagctatg
    23161 atatgtttaa aattctcttt tgcttttcca ctaagttctg atttggcgat ttttacaaca
    23221 gatgcaggat ttatagcttt attatttaaa tatactccaa aatgcaaatg aggccctgtg
    23281 ctcatacctg ttgaaccaac atatgcaatt acttgtcctt gatttacctt ttgtccgttt
    23341 ttaatttttg caaaacgact aagatgagca tataaagtca tataacctga gtcatgcttg
    23401 atttgaatta catttccata accacctttt gtgcctataa aggttactac tcctttgcca
    23461 gcacttttca caggagttcc agtaggtgca gcatagtcta taccaagatg ggcacgatag
    23521 cgttttaata taggatgata tcttgctgtt gtaaaaggag aagaaattct agtgtaattc
    23581 acaggttttg taagtaaaaa agattctaat tctttgccat cacgatcata gaatatatca
    23641 ttataagaaa agacttctct agcgctttta ttgatttcta ccattgccat ttttatattt
    23701 atatcacccc aaagtttacc catgcgtctt ttttgttcat aatatagggt tacttcatca
    23761 cctttttgga tattgcgaaa atttatactt cctcgaaaag cacgaaccat agcacgagct
    23821 aaagtactgc taccactttc ttcatagaca tcttgataag cagagctttt aatggttaaa
    23881 tgtaaaattc tatcttcttt ttgataagat acaggagtaa aagcaagagt gtattgtcca
    23941 tctttatctt tatagatatg aatttgtaaa tcatcgctaa ttggaattaa aacttgttct
    24001 atgttgttgt tttcatcttt taaaacttga tattttattt tataggctat atcagaagca
    24061 agttcttgat cttctctatc aagtccataa taaagcgaca taggtatgga atttctttgt
    24121 aagaatttaa gcaaggtatc tccattatcc caagttagct cttcaacact taaagctgca
    24181 aaactttgaa caacaaaaat aaataaaagc aataattttt tcatgagata accttaattt
    24241 ttaaaagaat tttgaaattt gaaagctata ttttacttta tttttcttac aattgcttaa
    24301 caaaaaagga ttataattct ataaattttt atttaaggag caaatttgtt taaaactata
    24361 gtgtgttttt tagctttaaa ccttagcctc tttgcggttg gatttgattt aaaacctata
    24421 aaaagtgaac ttgtaaaagt tgatgatatt tatggttata ttaaagatag tgatgatata
    24481 aaactttatt caagtggcgt agtagtgcaa cattttagca attcgcaaag tatcatcgct
    24541 agagcaagtg ttatagataa aaaaaatggt ttggcaaaat tagaatttag tgttttttca
    24601 gctcttaagc aagatgcttt gcctttacca aatgttttac ctaaagtagg tgatgaggtt
    24661 gttttaaatt ttctttatga tagaggattg gtaattgctc ctgatgaaca aacttataat
    24721 gaacttgtta gagaatttcc gcagatatat tttacccata ttgatatttt tggagcacaa
    24781 ttaattagaa cggctactct ttctcctaag cgttcagatc ttaggcaatt ttgtgatgat
    24841 aatgcggttg gtattttggt tgtagctttg gaaaatcaag cagaagttgt ggattgtcaa
    24901 gattttaata agctttatga agtgcctata agcaaaccaa ttagcgttca ggttcctttt
    24961 tattctcgta taggtggata taaaagtaat ttttttgatt ttaactctca agaaatagga
    25021 aattattata gatattatga tgctttgatt aatcttccta aggtgcaata aacatgaaaa
    25081 aagaatttga acaatatttt aaacgatttt taggagaaga aaacgcttat tttgatgaaa
    25141 ttcacaaaag agcttatagc tatgatgcga caaaaaaaca ttatttaccc gatggggttc
    25201 tttttccaag aaatgaagaa gatattgctc aaattttaaa attttgcaat gaaaataata
    25261 tcatagtcat acctcgaggc tcaggatctg gttttacagg aggagcttta gctgttaatg
    25321 gcggggtggt gcttgctttt gaaaagcata tgaataaaat tttagaaatt gatcttgaaa
    25381 atttagtggc tgttgtgcaa cctggggtta ttaatataca tttacaaaaa gaagtggcta
    25441 aatatggact tttttaccca cctgaccctg ctagcatgga gtattcaagc ttagggggta
    25501 atgtaagcga aaatgctggg ggaatgagag ctgcaaaata tggcattaca aaagattatg
    25561 tgatggcttt aagggctgtt ttgcctagcg gagaaatcat tcgtgcaggg aaacgcacta
    25621 ttaaagatgt agcaggttat aatttggcag gaattttaat cgctagtgaa ggttctttgg
    25681 cagttttaag tgagcttact ttaaaattaa tacctttgcc taaatttaaa aaaactgctt
    25741 ttgctatttt tccaagtgta aaaagtgcta tgaatgcggt ttacaaaagt cttgctagcg
    25801 gtgtaagtcc tgtatctatg gaatttttag acaatcttag cattagagcg gttgagagca
    25861 aatttaataa aggtttgcct atagaagctg gagctatttt gattgctgat gtggatggta
    25921 atgttaaaga ggctattgat gaggatttaa gaaatttaga atattatttt ttagaagctg
    25981 gcgctagcga atttaaaata gcaaaagatg aacaagaaac cgcagatatt tggtttgcta
    26041 gaagaaattg ttctcaaagc attgccatgt atggaacttt aaaacttaat gaagatatta
    26101 cagttccgcg ttctaaacta cctactttgc ttgaaggtat agatgagatt tctaaaaaat
    26161 atggttttaa aattccttgt tttggacata caggggatgg aaatgtgcat actaatgtta
    26221 tggttcctga taaaaatgat aaagagcagg tgaaaaaagg ctatgaagct gtggaagaga
    26281 tttttaaatt aacagtgaaa cttggaggaa ctttaagcgg agagcatggt atcggactct
    26341 ctaaggcacc ttttatgaat ttagcttttt ctgaagccga aatgaattta atgagaaata
    26401 ttaaaaaagc ttttgatcca aataatatac taaatccttt taaaatggga ctttagaagg
    26461 tgaaaaattt ttttactatt ttactaaatt tgcgtgataa ggaaatttta aattatgcag
    26521 cagcgcttag tttttatact gtattatctt taatacctat tttatttgta tgtttttctg
    26581 tttttacgca aatttccagt tttaaagctt attatgaaaa agcaaagcaa gtaatttttg
    26641 cttttttaat accaacgcaa caagatgttg ttgctaccta catcgatact tttttaaaaa
    26701 atagtgtaaa tttgggtatt gtaggtctta ttgctatggc atttacttct ttagcttttt
    26761 tttcaggcta tgattttgta atcaatcgca ttactaaaaa tgaacctaaa ggactttggc
    26821 aaagtattag ttcttattgg actcttttaa ctcttgttcc tttggggctt gggcttagtt
    26881 tttatatttc aggttttatc caacaaactt tagatgatta taaaataggg tttaattttt
    26941 ttgaaatttt accctttgta attatttggg gtttattttt tatatcttat tcaagttctg
    27001 ttcataaggg aactcttaaa agtttagctt tagtatcttt tggagcgggt actatttggt
    27061 atataggaaa aaatttattt gtatattacg tggtatataa taaaacatac gctagcgttt
    27121 atggatcttt ttctactatt ttattctttt ttatttggat ttatatttct tggattattt
    27181 atctttttgg gcttaaactc tattattttc taaatcacaa tcataatgaa gggaataaaa
    27241 ttcgcaaaaa tacaaagaaa agctagatat ttaaatcgca cagagattaa agaagcaata
    27301 agataactta taaaaatcca aaatgggata tggatattag ttccataaat tttaaattta
    27361 aaaaattcat ctaagataaa attgagcaaa tctccatagt ttataagatg caaaaataat
    27421 actaaaggat aaaatattac aaaaattcca ctcaaaataa tacctaaaat ttgttggtag
    27481 cttataagtg gaaaaaaata aagcacaggt aaaaccatag caaaaaaagt ccaaatatta
    27541 agcaaaataa tatttataag attattaaat ttatttgcaa aatgatgcat atataaaaaa
    27601 atataaaaaa cacctaaaat agaaaataaa aatccaatac taaataaaag tctagggtaa
    27661 agagaaatgc acaataaaat actacaaaaa agcgtaacga aattaatgat ttttatattt
    27721 ttacacaata gataaaaaat ccaaaaagcc ataatcaagg agcgcacaaa agaagggaca
    27781 aatcctatta aacaagcata agctaaaagt agtgcaaaaa ttaaaatact taaatctaaa
    27841 cgtaaatttc tataaggaaa atatcttttt tggaaaaaac tataaattgg agctaaaata
    27901 aagaaaatta aactaaaaag taagcctatg tgataaccgc taattgctat aaggtgtgct
    27961 ataccgtagt aatttacatc gtttctaagc tctaaagata tgggcagtgc aaaaaataaa
    28021 gcaccataaa attctttaat cttttcattt gtatgttgat ttaagaagta agatataatg
    28081 ggattgtatt ctttttcttt taatttttca aaatcataag aaggtgcgta aaaactttta
    28141 ctcagatagt ctttaaagtt aatattatgg gtgataattc taaggcttaa aaattgattc
    28201 ttgcttaaat ttaaatcctt aaaacttgta gtataaaaag tgaagttttc agtttgtaac
    28261 tttaaaaccc agtatttttt atttttttta ttatatttta tatattggtg cgttaataga
    28321 gcgttgtcta taaggtaatg tttttggttt ttaaagttta aaaaattatt atattctaaa
    28381 aggatattaa aaa
//
LOCUS       DARGEM010000008        24696 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.008, whole genome shotgun sequence.
ACCESSION   DARGEM010000008 DARGEM010000000
VERSION     DARGEM010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24696
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.008"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..122)
                     /locus_tag="SFZ78_000271"
     CDS             complement(<1..122)
                     /locus_tag="SFZ78_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8211182.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSIS"
     gene            complement(131..532)
                     /locus_tag="SFZ78_000272"
     CDS             complement(131..532)
                     /locus_tag="SFZ78_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG8211183.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDVI"
     gene            complement(571..1455)
                     /locus_tag="SFZ78_000273"
     CDS             complement(571..1455)
                     /locus_tag="SFZ78_000273"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG8211184.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNIRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            complement(1455..2828)
                     /locus_tag="SFZ78_000274"
     CDS             complement(1455..2828)
                     /locus_tag="SFZ78_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8211185.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            complement(2908..3735)
                     /locus_tag="SFZ78_000275"
     CDS             complement(2908..3735)
                     /locus_tag="SFZ78_000275"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG8211186.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIAILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            3812..6031
                     /gene="bamA"
                     /locus_tag="SFZ78_000276"
     CDS             3812..6031
                     /gene="bamA"
                     /locus_tag="SFZ78_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG8211187.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVSITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDNTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            6031..6753
                     /locus_tag="SFZ78_000277"
     CDS             6031..6753
                     /locus_tag="SFZ78_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG8211188.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            6762..7604
                     /locus_tag="SFZ78_000278"
     CDS             6762..7604
                     /locus_tag="SFZ78_000278"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG8211189.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            7606..8055
                     /locus_tag="SFZ78_000279"
     CDS             7606..8055
                     /locus_tag="SFZ78_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG8211190.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            8067..8429
                     /gene="dksA"
                     /locus_tag="SFZ78_000280"
     CDS             8067..8429
                     /gene="dksA"
                     /locus_tag="SFZ78_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG8211191.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            8419..9405
                     /locus_tag="SFZ78_000281"
     CDS             8419..9405
                     /locus_tag="SFZ78_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211192.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            9402..10328
                     /locus_tag="SFZ78_000282"
     CDS             9402..10328
                     /locus_tag="SFZ78_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG8211193.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(10353..11042)
                     /locus_tag="SFZ78_000283"
     CDS             complement(10353..11042)
                     /locus_tag="SFZ78_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211194.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELLESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(11166..11573)
                     /gene="ybeY"
                     /locus_tag="SFZ78_000284"
     CDS             complement(11166..11573)
                     /gene="ybeY"
                     /locus_tag="SFZ78_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG8211195.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            complement(11570..12184)
                     /gene="recO"
                     /locus_tag="SFZ78_000285"
     CDS             complement(11570..12184)
                     /gene="recO"
                     /locus_tag="SFZ78_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG8211196.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(12184..12705)
                     /locus_tag="SFZ78_000286"
     CDS             complement(12184..12705)
                     /locus_tag="SFZ78_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG8211197.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(12710..13465)
                     /locus_tag="SFZ78_000287"
     CDS             complement(12710..13465)
                     /locus_tag="SFZ78_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEG8211198.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            complement(13462..14151)
                     /gene="pfs"
                     /locus_tag="SFZ78_000288"
     CDS             complement(13462..14151)
                     /gene="pfs"
                     /locus_tag="SFZ78_000288"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG8211199.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(14148..15068)
                     /gene="fabD"
                     /locus_tag="SFZ78_000289"
     CDS             complement(14148..15068)
                     /gene="fabD"
                     /locus_tag="SFZ78_000289"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG8211200.1"
                     /translation="MKTAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNS
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            complement(15068..15637)
                     /locus_tag="SFZ78_000290"
     CDS             complement(15068..15637)
                     /locus_tag="SFZ78_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8211201.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(15652..16599)
                     /locus_tag="SFZ78_000291"
     CDS             complement(15652..16599)
                     /locus_tag="SFZ78_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8211202.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSFLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(16603..17100)
                     /gene="pal"
                     /locus_tag="SFZ78_000292"
     CDS             complement(16603..17100)
                     /gene="pal"
                     /locus_tag="SFZ78_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG8211203.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(17177..18385)
                     /gene="tolB"
                     /locus_tag="SFZ78_000293"
     CDS             complement(17177..18385)
                     /gene="tolB"
                     /locus_tag="SFZ78_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG8211204.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(18395..19174)
                     /locus_tag="SFZ78_000294"
     CDS             complement(18395..19174)
                     /locus_tag="SFZ78_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG8211205.1"
                     /translation="MKNYSLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAAKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            complement(19177..19566)
                     /locus_tag="SFZ78_000295"
     CDS             complement(19177..19566)
                     /locus_tag="SFZ78_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG8211206.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(19575..20129)
                     /locus_tag="SFZ78_000296"
     CDS             complement(19575..20129)
                     /locus_tag="SFZ78_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8211207.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(20129..20518)
                     /locus_tag="SFZ78_000297"
     CDS             complement(20129..20518)
                     /locus_tag="SFZ78_000297"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG8211208.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(20522..21919)
                     /gene="atpD"
                     /locus_tag="SFZ78_000298"
     CDS             complement(20522..21919)
                     /gene="atpD"
                     /locus_tag="SFZ78_000298"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG8211209.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(21945..22829)
                     /locus_tag="SFZ78_000299"
     CDS             complement(21945..22829)
                     /locus_tag="SFZ78_000299"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG8211210.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEYSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(22838..24343)
                     /gene="atpA"
                     /locus_tag="SFZ78_000300"
     CDS             complement(22838..24343)
                     /gene="atpA"
                     /locus_tag="SFZ78_000300"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG8211211.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(24357..>24696)
                     /locus_tag="SFZ78_000301"
     CDS             complement(24357..>24696)
                     /locus_tag="SFZ78_000301"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG8211212.1"
                     /translation="IKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFVGIV
                     YSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKALQN
                     KLNEYILKII"
BASE COUNT         8428 a         4318 c         3296 g         8654 t
ORIGIN      
        1 atactaatgc taaaaacacc tgatttttgg atttgagttt cattaaaaag ctttaaacta
       61 agtcctaaac aatcaaaacc tggccctaaa ttcgcactcg tagctggaac taaaattttc
      121 aaatttcatc ctaaattaca tctaaaaaat aaaagggaag attatcatta tttagtttaa
      181 gctcttgtaa attttttggt aaaaaaaact ctgctgggat attttgctct aaacaaattt
      241 caccttcctt atatacaaaa caaaaatttt tatttgcact tatgggttta tagccattta
      301 attcaaaagc actcaccgca aataaaggaa tattttttac tatacttaaa gtactcaaac
      361 ttacataaga aattttaatc cccatataag aacctggacc attagcatag attaaacttg
      421 taaaatcata ttctttaagc aattcatcta aaatttttgg taaaaattcg cttgcttttt
      481 cttcactttt ataagttttt ataagtttat catcttgata aattccgatc attaaaggct
      541 tagataaagt attaagtaaa agagaagttt ttatgcaaat accttttcat aagctttttg
      601 ggttgttttt tcaaggctta caatttcata agcatcttta tcttttaaaa cttctttagt
      661 aagtaaatga tttaaatgat gactcccagc atatgaagta taatctccaa aaacacgata
      721 tccaagtaag gttaaatctc caattgcatc taaaatttta tgtcttacaa actcatcttt
      781 gaaacgcaaa ccctcaggat ttaaaatacg attttcatct actactatag tattttctaa
      841 acttccacct agtgctaaat tcatactcct aagagcttga acatctttta aaaaaccaaa
      901 agttctagcc cttgctatgt tttctatata attttttttg ctgaattcaa aattgtaact
      961 ttgttcacct ataacagcat tgtcaaattt aattgtgtaa ttaatacggg gttctttagt
     1021 aggagttaaa cgcacaaatt tattaccatc tctcacttct ataggctttt taattaccat
     1081 aattttttta ggcgcatcaa gttcttttac ccctgcttca tcaagcatca tacaaaaact
     1141 aatacttgat ccatccataa caggagcttc atttgcattt aaaactatgc gtatattatc
     1201 gattccataa gcattaatcg cactcattaa atgctctatt gtagaaataa accctctttc
     1261 atctcctaaa acagttgcca tttgagtatt gatcacattt tcaggacttg ccttatagct
     1321 tgcattaaga tcacttctaa aaaatactat accactattt gcttctaaag gctctaaagt
     1381 aatttctatg ggttcaccct tatgaagtcc tatacctacg cctttgacag tttttgctaa
     1441 agttaattgt ttcattaatt ttttcctaaa attatctttt taccatcatt taaaacattg
     1501 taaatattat tttctatcca ttttttatct tgccattgtt caggacgcgt ttcaacccct
     1561 tgaaccaaaa ctccaaaatg caaatgatcg cctaaggcta aaccacttgt tcctgttttg
     1621 cctataatgc tttgtttatt aatcatttca tctaaatcaa catttttaga agaacagtgc
     1681 ccataaagac tatatactcc aaaaccatga taaacaatta aatttaaacc ataaattcca
     1741 ttttcagcag caaaaacaac cttgcctgcg ttattactta tgataggagc ttgtgctacg
     1801 cttgctagat caagccccat atgataagaa tcactcacaa attgcccatt ataagaataa
     1861 tacctatgat cagcaaaatc cgctactttc ataccatttt taagaggtaa aaataaattc
     1921 aaatcaaaat tatcaatttt ttcctcaggt acttttgaag tgatttcatg gataagtttt
     1981 tcattgctat ttcttaaagt ttcattgaca aacttaaatt tttcataacg attgagatta
     2041 ttatcttttg gagcgtactg atttgctaaa ttctcaatct ttccatctaa aaatttatcc
     2101 gttagattga tatttgaaac acgatattta cgattaacaa aataatacct tatacgttct
     2161 tttgaaatat tgcccgcttt atccgtagcg ataacaaatg cacgaaattc ctcatctctt
     2221 gcatcccaag caatcaaagc cgcataatat ccttctttta cataaggtgt ggctttaaag
     2281 attttacctt tatttgtttc tatatacacc ttatctaaat tagcatcatc agccttaaaa
     2341 acaactgccc cagcaccacc ttgctcgatt tggtaagaat tgcttatgat attgattttt
     2401 ggagccgtat tatctactaa taccgcaatt tgttttcttg cttcattgcc actaaaaaaa
     2461 ttccaaaaac tagaatcttt agctatcacc tccaaaacaa aagattttac attttctttg
     2521 taaccaaatt ttggcaaagc aacttgtaag gtaatatctt ttaaattaga aatcttttca
     2581 tctgctataa ccattgcact agtattgtcg tctttatgca atataatttg tacgtttttg
     2641 atagaacttt catcatcttt aatatgcact aaaataggtt ttttaagatc agtatataca
     2701 acatctggca ttaaaatttg aggaggattt ttttcaaaaa tacttaatct tgaaataaaa
     2761 aaaatcaaaa ttgctattaa aactaaaatt aaaacagata aataagtttt gccttttctt
     2821 tttgccataa ccttccttaa aaattttcaa tgtttttgtt gcttttaata taaattctat
     2881 tatattttca gtaaatatct agcaaattta taaaatttct cttagggtat tagcctgttt
     2941 catccattct cttaattcat cgtttttgtc taattgtatc atttgtttac atctctctaa
     3001 ttcttgttga aaaaaatcaa tagaacttaa taagttatct ttattttgta aaaaaatact
     3061 ttcccacatt tgtggcgatg atttggcaat tctgctcata cctttaaaag atcctccggc
     3121 taaatgaact atatttcttt tatcttcttc cttcattaca aaatttgcca aagaaaaact
     3181 tataacatga ggcaaatgag aaataatagc agcatgatga tcatgggctt tactatccat
     3241 aaaaacaatt ttcatcccta aatgagaaaa aatttctacc gctctttttt gatgtaaatc
     3301 atcagctatt tcactatcac aaagaacaca aactgcatct ttataaagct ctttaaaagc
     3361 tgcttttgga cctgaatttt cagttcctgt cataggatga gcaaaaagag tttgtttgat
     3421 taaattctta ggcaaacttt ctataatttt tctttttgta cttccaagct ctataattgt
     3481 tacattagaa ggcaaatcaa ctaacttttg caaaattgct ataatagcat caacaggagt
     3541 tgcgacaaaa atcatatcac ataaagctaa atctttaaat tctataagct catgaataag
     3601 acctaattgc agggcatctt tttcattttc tttgcttaaa tccataccat aaacacaaga
     3661 aataagctta ttttctttca aacaaagccc taaagatcca cccataagcc caagccctat
     3721 aattgctatt ttcatacttt ctaccttagt ttttttgtta aatttttttt gctattatac
     3781 agcttttaat aaagctttag gtaaaaaatc aatgaaaaaa catcttatta gtatttgtgc
     3841 tttagttgct atggccaatg cagcaaccat taaagatatt aaatttatcg gattaaatca
     3901 tttatcgaac acaagcgcta taaatatcgc ggggcttaaa ataggcgagg aaataaatcc
     3961 tgcaaaaatc aacactgcta ttcttaatct ttataaacaa aattatttcg aaaatattgc
     4021 agtagaaaac aacaatggaa ttttggaaat tatagttact gaaaaaccaa ctatagcaaa
     4081 ggttagtata acaggtatag cttccaatga tagaaaacaa gttgaaagta ttttagggat
     4141 taaaagaggt acactacttg atgaaggaag tataaaagaa gctattgaac gcattaaagc
     4201 ttattatgaa gcaaaaagtt attttgatac tattgtagaa tacaaaaaaa agactttaga
     4261 aaatactgat ggactagagc ttgaatttat agtaaatcgt ggtgaaaata tcattattga
     4321 taatgttcat ttaagtggag caaagaaatt ttcatattct gatatagaac ctgctgttgt
     4381 taacaaagaa aaagaattta tgggatggat gtggggacgc aatgatggaa aattaaaagt
     4441 ttttgaactt agtaacgata gttcaagaat tgctgatgaa tatatgaaaa aaggatattt
     4501 agatgttcaa gtatcctccc cttatcttaa aacctacaca gatacttatc aagcaaattt
     4561 gacttatttt atcaaagaag gaaagcctta taaaattaaa agtataagca tagaaaatcc
     4621 tttatttgat gataagcaaa atgcacaaac cgtaaaagat ttaagatcaa gcgctggcaa
     4681 aactatcaat atcgaagaca ttagaaaaga tgttaaaacc atagaaacac aaagtgctga
     4741 tttgggttat gcgtttgtag aagtctatcc tgatattcaa aaaaatgatc aaactcaaga
     4801 agccaccgtt gtatttaaag taatccctca cgataaagtt tatataagaa atgttattat
     4861 ttcaggaaat tcacgcaccg tagatcgcgt catacgccga gaattatata taacagaagg
     4921 taatttatac aatagaacag acttaagcga gtcaaaaaat gctttaaaaa gaacttctta
     4981 ttttgacgat gtaaatatca aagaagaaaa agttgataat acacatattg atttgattgt
     5041 tgatgttaaa gaagcttcta caggagctat ttctggaggc attggctatg gatcaagcga
     5101 tggtattttg cttaacgctt ctttatcgga tacaaatatc tttggttcag gaataaaaag
     5161 ctctgtaagc gtagataaaa gcgatgatac tttatcggga aggattagtc tcgtaaatcc
     5221 acgcgttctt gatagtcaat atagtctggg tggaacactt tattcaaatg actatgaatg
     5281 ggataattat tcagaaaaaa attacggctt tgatataaca gttggacgcc aatttgcaag
     5341 atactataat gtaagcttaa cttataatct tgaacaaagc gatatatatc acttaagtcc
     5401 aactctttta agaacaggat atgaacttgg caaaagtatt aaaagctcta taactccagc
     5461 aatcaccttt aacaatacag atgattatta tctgccacga tcaggtatta ttgcttcaac
     5521 tagtttagaa tacgctggac ttggcggaga tcaagaattt atttcatcaa gctctaaatt
     5581 taacttttat caaggtttgc aagactatat aggatatgat cttatttatc gctataaagc
     5641 gagtttttat aaagtatggg atgaaggtta tttaccaatt aaccaaagaa tttatttagg
     5701 tggtattaga tcgatacgcg gttttgaaag cagaacagta agtcctaaaa atcaatgggg
     5761 agatgaagta ggtggaacta tagcttttgc caattccgta gaacttagtt ttcctttgat
     5821 tgatagaatc aaacttcgtg gtagcgtgtt ttttgattat ggtatgatag ggcgtaaaaa
     5881 tttagatgaa ataaaaagaa tgagtacagg tataggcatt gaatggatta cacctattgg
     5941 acctttacaa cttgtatttg ccaaacctct taatgataaa aaaggtgatg atactaatag
     6001 ttttgaattt aatcttggaa cacgctttta atgaaagaat ttttagatgc ttgcttgaat
     6061 gcaaatttgc aaatacgcaa gtatctaaac aatatcccac aaaatgatct taaactttgc
     6121 tctaaattag gctatgataa aaatcaaggc tatgagcttg acttaaaatg tgaacaaatt
     6181 ttcataaaat atcttagttg ttttggacaa attttttctg aagaaagcgg attgatcgga
     6241 aaagctagcc caaaacaaat gattcttgat cctttggatg gaagttcaaa ttttgtttct
     6301 aaaataccat tttatggaac ttctatagct cttatggaaa aagatcaggc aaaaagcgct
     6361 tttgtttgca atcttgtcag tcaagaaatt tttgctttta ataacaaaca agcttttaaa
     6421 tccaatcttt ccgatccaaa atactcaccc ttaacaccta atctattttc taaaataggt
     6481 atagttgaaa aaatttcact ttatccagaa cttctcgatt ttttaacaaa aaatcaatta
     6541 aaatttcgct ctttgggtgc aacagcctta agtcttgctt atgcttcgta ttttagtttt
     6601 gtattaattc ttggaaaaac acgaattttt gatacagcag ctgctttagc aattcatcaa
     6661 aatttatata tagaaaaaaa tgaaaatttc cttctcctaa gccaagacaa aaaaattttt
     6721 gatataatct tagaattttt aaaaaataat taggtgaata tatgaatttt gcagatattt
     6781 tttcaaaaat aagaagacaa caacctagcg ttaaagaagc gccaaatcac tgggtaaagt
     6841 gccaaagttg tcatgctttg atgtattata aagaaataga atcttgtttt aatgtttgtc
     6901 ctaaatgcaa ttatcacatg agaatttcag ctgatgaacg tattaaactt ttaagcgatg
     6961 aaggcagttt tattgagtat gatgcaaatt tagaagctat agatccttta aaatttgttg
     7021 atagcaaatc ctataaaaaa cgccttagcg aaggtgaaag taaaacaggt agaaaaagtt
     7081 ctgtcatcag tggagaatgt gaaatcaatg gtttaaaaac ccaacttgtt gtatttgatt
     7141 tttcttttat gggcggatct ttaggttctg ttgaaggaga aaaaattgtt agagctatac
     7201 aaagagctat cacaagcaaa acttctcttg tcatcgtaag tgcaagcggt ggagctagaa
     7261 tgcaagaaag tacttattct ttgatgcaaa tgagcaaaac tagtgctgca cttaaacttc
     7321 ttagcaaaga aaaacttcct tatattagca ttttaaccga tcctactatg ggtggagtaa
     7381 gtgcttcttt tgcttggctt ggagatttaa tcatcgctga acctgaagct ttagtaggtt
     7441 ttgctggtgc aagagttatt aaacaaacta taggagcaga tttacctgaa ggttttcaaa
     7501 aagcagagtt cttgttagaa catggactta tagatgccat agttgaaaga ggagaacaaa
     7561 aacaatatct tagcgatgta ctaaaatttt ttagtggaaa ataatttgca agttaatatc
     7621 ttttgtattc aaaaaagtga tgaatttaaa acttgtagtg agaaatactc taaactcatc
     7681 tccaaatacg ccactttaaa agaaataaat gtttttaata aaaaaatagc cttagctcaa
     7741 aatttaaatg ccatagaagc aaaaaaaagc tatgaagaag cttttatgcc ttataaaaaa
     7801 ggctattgta tcgctcttga tgaaaaaggg aaagatctta caagtataga atttgcaaaa
     7861 ctcatccaag ataaaaatga attaagtttt tttataggag gtgcttatgg tttaagagaa
     7921 gaatttaatc aaagtttgga ttttagacta tcattaagca aacttacttt agcacatcaa
     7981 tttgttaaaa ccttactttt agaacaaatt tatcgtgcat tttgcatcaa caacaatcac
     8041 ccttatcaca aatagaaagt tttaaaatga aaaaaaatga aatacaaaat ttcaaaaata
     8101 ttttagaaga aagaaaaaaa gccatcttag aaaatttgca aagcaattca aatgaaatcg
     8161 aagctcttca caatagcgtc ccaagcgata gtgtggattt ttctgtcata gaaacaggat
     8221 ctcaaattga ctttgctatc agcaccaatc tcaaagaaga acttatagaa atcgaagatt
     8281 ctttagataa aatcaaaaac ggcacttatg gaatttgcga atcttgcgat gatgaaatcg
     8341 actctcaaag actaaaagtc aaacctcacg caagatattg tatcacttgc cgtcaaattg
     8401 cagaacaagg aaaaaaacat gaaaattaaa ctcttcttac ttgcaagttt tatttatata
     8461 gcacttattt ttgcctttgc ttggcatcta gaactaggaa gctatactct aaatatcagc
     8521 acttatacct ttgaactacc tattatgata tggcttgtta ttcctttatt tatttatatg
     8581 attttagccg ttttacacat agcattttat ggatttttgc gttatttaaa atttaagcat
     8641 ttttttaaag atgcagctaa atttgaagct tatactcaag atttactcct tgaaaaagat
     8701 cttaaaacca cttttcaaac aaaagaattt agatctgtag cacaactttt taaaaccata
     8761 aaaacacatg aaaaaattcc acactcaaat aaaatcaatg aaattttaga tcttattgat
     8821 ggtttaaata aaaacgaatt ttttaacctt agcaaattta aactcgaaaa taacaatgtt
     8881 ttatatttgc aaaatgaaaa aaatcatctc aaaaatgatg caaattatgc ctataacaaa
     8941 cttaaaaacc ttaatgaaat caaagatgaa tttgaagaaa ttgcttttaa cactcttata
     9001 gaaaaagcta gttatgagca aattaaaaat gtaaaaatcc ctaaaaagcc ttctgaagtt
     9061 ctcacactta tcaagcgttt taaagaagga aatttagaac ttagtgtagc agaatatgaa
     9121 gttttacttt cacacaacat attaagcgaa aaagactatc ttaatgcagc aaaactaagt
     9181 actaaacttt taaatcctga tgctatttta ggaattttta acaaaattaa aaatgaaaaa
     9241 agcgaagctt taagagcata tttatatctt ttggctgaat ttggactttt agatgagtta
     9301 agagaacaaa ttcacaatga tgataaaaaa tttaatgatt ttaaagcctt tttagccttg
     9361 cgtgaaaaaa atatcaaaat cgatctaaat caactcatac aatgatagat tttagcaaaa
     9421 aacccctgtt tttagcccct atggcaggtt tttcagatct gccttttcgt aatgtagtaa
     9481 aaaaatttgg tgctgatatt accataagtg aaatgataag ttctaatgcc ttagtttatg
     9541 aaagttctaa aactttacat atgctagaaa gagctgaatt agaaaatccc tatatagtcc
     9601 aaattgcagg tggagataaa gaagtgctaa aaaaagcagt gcaaatgcta aatgaaatgg
     9661 attttgtaga tgggatcgat tttaattgcg gttgccctgt aaataaagtt gttaaacaat
     9721 gtgctggcag tgctttgcta gaaaatttag agctttttaa aaatcttgta ggagtgatta
     9781 aagaaaacaa taaaaaaagc cttacaagtg tgaaatttcg actaggattt aatgaaaaat
     9841 atcctgaaaa aatggctaaa atttgcgaaa gcttgggggt ggattttata agtatccacg
     9901 gacgcacaag aaaacagctt tatagcggaa aagccgatta tggatccatt gctagtgcta
     9961 aagcgagtgt gaaaattcct gtgattgcaa atggcgatat taacgcacaa aacgctaaag
    10021 aagtttataa aatcacaaaa tgtgatggac tcatgatagg gcgtgcaagc gtaggaaatc
    10081 cttggatatt ttatgaaatc aaaagcggta aaagtgtaga tgaaaaactc aaaaaagaaa
    10141 tcatactcac tcattttgat gaaatgataa aacactacaa agatcaaggc gtaagtatat
    10201 ttcgcaagca tttacacgag tattctaaag ggcataaaga cgcttcagcc tttagagata
    10261 ccgttaatcg tatcgacaat gtcgaagaaa tgcgaaaaaa aatagaagaa ttttttagtt
    10321 taacttgatt gatttttata atttaaaaaa tcttaagcct taatatctat aatttttgct
    10381 gaagtgtttt gagaaagaat tttattaaat tcccctgcat tatcattgct aaaattcata
    10441 ccaaaaagaa tttctagctc atcgcttgtg ccaaatttag tttctagtag ttttcttaaa
    10501 agctcattca ttttattatc atctttgtag gtttcgcttt tactttctac ttgtataggt
    10561 ttgaaagctt ttttgtcttc ttctgaagtt tcttgcagtt ttttctgcga tgaatcaata
    10621 ttgttaaaat caacaaaata ttttttttga agctcaagat atttttcttt aaattcatct
    10681 atacttttgc ttgtgtgaaa aattttaaca taagcttcat cataactcac gccatcaata
    10741 tgcatccaac gagggtgttt agcattttca tccatccatt gaaataaatt tttaacttct
    10801 gattctagta attcattgtt tctaagctta tcttctattg aaccctcgac taattctatt
    10861 ttatcgctga attttttaga aatcttatac aaatctatca aatcattacc taattcttct
    10921 ctttgttttt ttgtaagctc gggatttcca ttttcaatac tttcatctct tattttggta
    10981 agtgtttgca aaggattgtt tccaaaatat ctattaaaag agcttagagg aaatactatc
    11041 atctttatca ccttggaata aattttattc taaagtaaat cggcaaaaat gatttttttt
    11101 aatattttta ctcatatatt taaaatataa agcgcaagtc ttctagccct tgaaaaaaat
    11161 cttacttaat cttccaaagt ccttacaatc aaacttttag gtaaattaaa atgctctata
    11221 agttctttct ctttttctct catttctcca ttatcatttt catgatcaaa acctaacaaa
    11281 tgaagcatag cgtggataaa aagcaagctt atttcttctt catagctatg ccctaactct
    11341 ttagcctttt cttttgccaa atccacattg atcacaacag aacccaaagg caaactctca
    11401 tcgatatttt caagtggaaa agaaagtaca tcagtggttt tatcttgttt tctttgctct
    11461 aagttaattt cttgcatttc tttactatcc acaaagacaa gctccacatc tttaggactt
    11521 aaaaaacttg ctatagattc taaaaaatca catttttcat cacttaatat cataaacctt
    11581 ccttaatcaa atgatataaa ttttctattt cttcatcatc aaaaatcgca caatttttac
    11641 tactataaaa ttgttttagt tttttctctt caaactcaaa tcctaaagca cattgagaat
    11701 gcgaaggtaa aaaagccctt agcaatgtaa tggaattttg aattttctca tcacaggcaa
    11761 aacaaaaaaa atctttatgc aatcttcctt caaattccaa aatttttaaa taagcatcaa
    11821 caataacacg ctttggattt tgtttttcaa accttttcac acactcatca agtaaatcaa
    11881 aataaaaact atcaagctct tctacatctt ttaagtgcct atataaaaga cggataaatt
    11941 cttgccaaat aagcatttta tccctttgca taatccataa aaatcccaaa tgcaatacat
    12001 ctttaagtct tggtaaaaaa ctaggatttt cttctaaagc aaagtcgatt ttatagccgc
    12061 ttaaaatact agaatgtcta agtccataaa aacgataagc cttaataagc attttaggac
    12121 ttaaaatata aacaatcaaa tcctcatctt taactttttg agtatgaagt ataaagcctt
    12181 gcattaaaca atttcaatac cataagccct aagtatatca aaagcggatt tttctaaatt
    12241 ttcatcaaaa cttgcactta aattttggtg taaaattatc cttgcattag gcttagcacc
    12301 aaaagctaaa ataatattac aaaacacaca aatatgagaa acaagccctg caaaatgaag
    12361 ttcttcataa tcactttttt gtatgaaatt agctaattct aagctaccaa aagtattttt
    12421 ataaaaaatt ttatgagctt tttgtaaaaa aggttcaaat tcctttggca tttgccaacc
    12481 caaactctct ttaatgcaat gttttacagg caaatttaaa ccttctttac tttgtagata
    12541 atgctcatca tgcgtatcat aggttaaaag caaatgcgtg ttattaaaat cgatttgatt
    12601 taaggcttta agaatatttt ctttgatttt taaagcctta tcaaaaccta aacttccatc
    12661 aataaaatca ttttgataat ccactaaaac aaaagctttt ttcatgcttt tatgcctttt
    12721 gaagccaaaa actctccgtg tgtaaattgg caaaagcggt ttttaaactt gtaaaaagct
    12781 taggatgatc tttttctaaa tttgctaaaa gctgtttagc ttcttctcta gcgtgtggaa
    12841 attttacatt tttttcactg agtttcatac caggacaaaa ttcatttcct atcacgctaa
    12901 gttcattttg cgtagcatta tccctaagct gtctttctcg cacaaaaatc aaagggcgta
    12961 tcacagttat accgcgtttg ctttgataaa taggcgctaa ggttcttaaa gctccattat
    13021 gaataaaatt cataaaaaag ctttctgctg catcatctaa atgatgggct atagcaagct
    13081 tgttaaaacc tttttcaaga gcgtaagtat ataaagctcc acgacgcatt ctcgaaaaat
    13141 aactacaaaa acttgaattt tctcttatgg tatcgcctga aacttcataa atatttgaat
    13201 caagcacgct atgtttaatg ccgtgttctt cacaatgtgc atgaagatga gaataatcct
    13261 cgcccatgcc ataactcaaa gttaccgctt caagttcaaa tttaaaagga gcatgagctt
    13321 gcatacgatt taaaagatgg gctaaagcca aagaatcttt cccgccacta agccctaaaa
    13381 gaaccctatc tccatcttta ataagtccaa atttagcatt agcttgtgca acttggcgta
    13441 taagtttttt gctaagattt atcataattt ctcgcacatt ttaagcacaa aattggctga
    13501 aattttagct gaattgatca caaattcatc aaaatcaaat tcagcctttt cccctgcttt
    13561 atcactcata gctcttaaga taaaacaagg cacctttaag gcatcacaaa ccaaagccac
    13621 acttgcgcct tccatttcac aagcatcagc attgaaaatt tctctgattt ttgctttttt
    13681 tgcttcatcg caaataaact catcacccgt tgcaataatg cctgcacgca gtttgatatt
    13741 taattcctta gcaacttcta aagcaagatt gtttaatttc tcatcggttt tgataaaaat
    13801 ttcattacct ggaacaaaac ccaaaggatg cccaaaagcg gtaatatcaa gatcgtattg
    13861 agctaatttt gttgcataaa gcaaatcacc aatttcaagt tcaggattaa aagcacctgc
    13921 aactcctgta aaaagcaaag cttgtgcgcc aaatttttct atcatcacac tagcactaag
    13981 agtagaattt accttgccaa ttttagaata cgctaaaaca agttcatggt ttttatactt
    14041 tgcaaaataa taagtattgt tagcgtgttc tattttcgta taatctttaa gtgtttcaag
    14101 taaaggagtg atttcttcac tcatggctcc taaaattgct attttcatca tacaaccttt
    14161 aaaaattcat caatatcatt catatttgtt aaagcataag tttcttttga agtgattttt
    14221 ttattcaaac ccttaagcac acttgcgcca aattctatga aataatctac ttcattttca
    14281 catgccttaa tgctttgttt ataaagcaca ggagagataa gttgtgcttt taaaagctca
    14341 agggcttctt ctttgcttgt ataaattttg gcatttgcat tagaaattac ggctttaaaa
    14401 tttggtttta ataccttttc aagctccaca caaagcttag ctgaagcatt ttccaaaaga
    14461 ggacaatgac ttgccacgct catatttaaa agcatagctc ttttagctcc tgcttcttta
    14521 aatacacttt cataacttgc taaatcaggt tttaaacctg ctacaacgat ttgtccatcg
    14581 cagttataat ttgcagcgaa aatttgcttg ttttcttttt gtgctttttg acaaagctct
    14641 tcaacctttt catcatcaag ccccaaaacc accatcatac ctgcttcaac ttttgcacaa
    14701 tcttcttgca taaaaagtcc tcttttattg accaaagaaa gagcctctaa aaaatcaaaa
    14761 gcactattaa cagctaaggc tgaaaattct cccaaagaat gccctaaagc aaatttcgaa
    14821 cttaaatcag gttttttttc aagtaaaaca ctataagcca ttaaggaatt taaaacgatg
    14881 gcgggttgag taaattcact ttgattgagt ttttcgtttt cttcaaaaag caaatgttta
    14941 aaatcaatct tacaaaaatc acttgcgttt tgaaggagtt ctttggcttt tatagagttt
    15001 tcataaaaat cttttcccat gccaagactt tgtgagcctt gacctggaaa tataaacgca
    15061 gtcttcatta atgacaaccg caaccaccgc caccacagca accgccgcca ccatgtccgt
    15121 gtccgtgatg atgatcgtgc ccatgtccgc ttccacaacc acaactatga cttcctgcga
    15181 taatacctgt aagaatttca tcttcacttg cagctctagc atctacgata tttaaagaaa
    15241 aaagcaaatc acgacctgca taagggtgat tataatcaat tgtcacatca ttttcaccaa
    15301 tttcttttac agttacacga acggtttcgc cattttcacc ttcgccaaaa agttccatac
    15361 ctacttttaa atcaatacct gcaaattgct cttttggtaa agtttgaacc gcattttcat
    15421 cgtattcgcc taaacctttt tcttttttaa ttaccacatc agcattgcta gggcaatcaa
    15481 gcttcatcac ttcttcttct aagctttcta aaatctgacc tttgcctaaa ataaaagaaa
    15541 taggttgaga atataaattt gattctaaaa cttcatttgt atttgcatct tttaactcat
    15601 aaaacattga aactacacta tttttttcta tagccatttt atctccttaa tttattttct
    15661 attaggtgaa gcttttgctt cgggtgaatt tggataatta gtttttaaag ctttataaaa
    15721 accatttgct gtttttgtat cacctgtttt atccaatgaa atggcagtat gatataaaag
    15781 ttttgggaaa taatctcctt ttgtactcaa agaagaactt tttttataat aaacaatagc
    15841 attgttataa tttttttgtt tatactcgat ctcccctaac caaaaatttg ctcttgcagg
    15901 tttatactgc tttgttatga gaaaatttaa ttttgctttg gaatcttcaa aagcattttt
    15961 atcaacatct tttatcgcta attctaaaat ttcattattt tttttctttt tccaagattc
    16021 atcaatttgt tttgctttat catcttgggt attttgagta ttattgtttt caatggtact
    16081 atttgaatct gtagttgaaa caacaacact aggtgtaata gttttaacgc ttaaatttgc
    16141 atcatttaat tcgtttttag aaacataatt tgcattaata gcatctacta aaaaactaag
    16201 ttcggctaaa acttttttta cttgcttatt attagcttct tgaatttttc tactttcttc
    16261 aacataagcc tttaattttt gaatttcact agtaaaatta ttttcaatat tttgattatt
    16321 ctcttcaact tgacttaatc tagaatttga tttggcatat tgagaattta taccttctaa
    16381 agtgctttgt aaaccctcga ttctttcgtt aatttcatta attctagcat ttgtttgtat
    16441 attttcatta tttaaattat ctaacttttc tttaaataat ttttcatttg aagttaaacc
    16501 ataagaagaa ttgcttgtta tatctcctgc accaaaagct gagctttctg cataaagtaa
    16561 agtagctcca agaagagcta ctgtgaatat ttttttcatt aattatcttg ataatttaaa
    16621 ttcagcacgt ctgttttgcg catcgcaagc tttagttttt tcagtacaca caggatttgt
    16681 ttctccatag cttttaacag caattctatc agcatttaca cctttagcga ttaaagcttc
    16741 ttttacagct tttgctcttt ttaaacctag agcttggtta tattcatcgg ttccccactc
    16801 atcgcagttt ccttcaacag taatacttac accgcttact tcagtgttaa aaatattagc
    16861 atttgtgctt acaacatttt gcatatcagg acgaatgttg aatttatcaa aatcaaaata
    16921 tactttattt aaagtatcat taagttgaga aatttttgaa tcaatatccc aaccatcact
    16981 tccacctgaa ccacgatttg aatcaacact actatcaccg cttacgctag tgctttttgt
    17041 gctacaacca ctaataacaa ctgcaagagc tgcgattgaa gtaaaaagaa tttttttcat
    17101 ttatgacctt tcaaagttaa taaattctta ttattatatc taatttttaa ttaattttaa
    17161 cctaaaattg aaatttttac caatcaattg attgaatttt tccaacccta agaggaaaat
    17221 aaaaagtctt atttgcattt acacgaataa cacccaaagc actttgcgca cctaaatatt
    17281 tgataaatac tatacttcca ccatcactag aaaatcttgg aaataaattt tttccatttg
    17341 ctgtaagttg acgaatataa tcactattaa ttgacatcaa ataaatatta aaaacacctg
    17401 cttgatttgg ttcacgactt gaataaacca aaaaatcttt ataagtcgaa acagccgaat
    17461 tgtttctacc atgaaaaaca acttgttcag cactattgct atttaaatct tgcataaaaa
    17521 tattaggata tcctaaacga tcgcttacaa ataccacttt actatcatct gagccaataa
    17581 aatttccatt aacatcaata ccagaataat tagttaattg tgttagattt ttggtattta
    17641 agtcatataa ataaacatca ggctgatctt ttggagccat ggtaacaagt agtttacttc
    17701 catctacact cacatcactt gctacaacca taccgccact tgataaaatt ttactagctt
    17761 tattggtatt taaatcataa cggtataaag ttggcttatc atgatcataa gctgtataat
    17821 aaaatagagt ttgttcttta tttccccatt ttggaaataa attaagccca ccatcaacaa
    17881 taactttttg ataagttaaa gtataatcag ccataataat ttgacttttt ttagagctag
    17941 aatttctcgc gatcaaaatt ttatgatcca tccaatcaac aggtgcaagt cctaacgcat
    18001 ttacagaagc tttgacgctt ttatgtgcca aaaatggata ttgctctaaa ccatttaaag
    18061 tataagtttg ctctgactta tcagaaccgc cagcttttat ttttacattt aaactcaaag
    18121 tgttaccatt tttatttaaa gtgtattcaa aagtataatt acttgtctca gttgcattag
    18181 caacaacttc aaagtttgaa cttactttca aatcgttcac aatgatatta taaaagcttt
    18241 tctttaaatt ctcatcactt aaatttgaat tgtctttaac aataatcttt ggtaaaacta
    18301 caccagaatt aacaacatca atcactggat cttctgccca aagacttcct aaaaagacta
    18361 aaaaaattgc tacaattttt ttcatttttt tctcctaatc atttttaact tttacttcat
    18421 ctcttaaatt catggtaatg cttatatttt tattttgcgg aggataagta ataaatttac
    18481 ctttttgact ttctaaaaat tcagccactt tagcatcata taaaggattc ccactttttt
    18541 caactgaagt atagccaaat tttccatttt catcaataaa aatttttacc ttaacagaaa
    18601 ttttttcact atttggataa tactgagtcc atctttgagt gataatacgc acaactttcc
    18661 ctaaaaattc atcataaatt ccaatctttt gcgcctttgt gctttcgcct tgcgttgaac
    18721 tttcttcttg aagtaaacta tcattaagtt gttttacaag ttcagaagct tgaggttttg
    18781 cggcactaga agctcctgat ttagcacttg attgaatttt tgtagtcttt tcttcttgta
    18841 tttctttaat atttccaaaa agctcattaa aattacttgc cttttggtca atatcttcag
    18901 ttttaactgt tttatttgta gtctgagcaa aaagcttttc tatatcaatt tgctctgttg
    18961 gtttttgtat ttctttagga gtgttgcttt gagtaataac ttgttttgat ggttcagcaa
    19021 gttcaatatc tacaaaacta tcttttatat cagtatattg tatagcaggt tcaacctcgc
    19081 ttacaagtct aaaaaaaaca agaattacta tactaatata tattgctaaa gcaagtaaaa
    19141 acgaatttaa attactcaaa ctataatttt tcatgattat tcagtctgta aagcaacttt
    19201 attaaatcct aaatttttta cacttcttaa gactgaaata acatcgtcat attttaagct
    19261 tttatcagcg cgtataaaaa ccggatcttc ggtattaaat tgtgcttttc tttgagcaag
    19321 attgtcagca aaacttataa aatcgtattt ttcttgattt aaaaaaattt ctttttttgc
    19381 attaatacta ataattaaac tcttaacagt tggagtgctg gtattttttt gactaccttg
    19441 tggaagatta attttttctt cataagtaat gcttggagct gttaccatta aaatcgcaag
    19501 caatacaagc ataatatcta ctaaaggtgt gatattaagt tcaggttttt catcatcaaa
    19561 tggcattttt aaccttattt actcgaactt ataactttaa tctcgctatc aataatgctt
    19621 aaaagttcaa aagcttttct tttaatgatg agatgaaatg tataagcagg aattgctact
    19681 aaaataccac aacctgtagc aactaaagcc tcgctgattt taggagctat gatacttaaa
    19741 gaattttgag ttccaagccc accaaaagtt tcaagtatag aaataactgt cccaaaaaga
    19801 cctataaaag gtgaagttga agcaataata ctaagccaag taagtccagc agaagcgcgg
    19861 cgacttgcta aatttttata gatttctaaa tgatttgaag ttgtatcatt gcactttctt
    19921 aaaatcgaat cagtacgact taaatccttc tcacccaaga gcaaagtttc taaactttct
    19981 ttttccttat ttctccatgt agccaaataa gtcaatctag caaacaaaat actaaatgct
    20041 aaaataaaat ataaagaaag ccataataaa actatataag taataatact tgaactattg
    20101 aaaaaatgaa atatagcttc aaaattcatt aatgcatcct tgcattatca agttttgaaa
    20161 aagttgctgc taaagctgca ttatcagaac tcatagattt aatcaaatct tttgcttgag
    20221 caagattttt ttcaatctca ctttcatcac ttccacaaac ccaaaccgca ccctttgcta
    20281 acacgcaaat cttatcttca tctacctttg catgtccagc atcaatagca attaattcat
    20341 ggtttaaatc agctttttca atatcaatta ctccagattt taaagaagaa accaaagcag
    20401 catgtccttt aagcacgcca aattctcctt cactacccgg taaagtaaca gattttactt
    20461 ctccttgata gattacaccc aaaggcgtaa ctatctcgaa attaatcaaa tcgttcataa
    20521 attaaccttt taatttatcc gcttttgcaa tagcttcatc tatatttcca accatataga
    20581 aagcattttc tggtaaatga tcatatttac cttctaaaat tcccttaaat cctgctattg
    20641 tatcttcaag gcttatatat tttcctgggc tacctgtgaa aacttctgca acgaaaaatg
    20701 gttgtgataa gaatttttca atctttcttg ctctttcaac tacaagttta tcctcttcgc
    20761 taagctcatc catacctaaa atggcgatga tatcttgtaa atctttgtat ttttgaagca
    20821 ctgattgaac accacgagca actttataat gttcttctcc aatgatattt gggtcaagca
    20881 ttcttgaagt tgagtcaagt gggtcaactg caggataaat acccttttca gcaatagctc
    20941 tatttaaaac cgttgtagca tctaagtgag caaaaacagt tgctggagct gggtctgtta
    21001 agtcatcagc tggaacgtaa acagcttgaa ctgaagtgat tgagcctttt ttagttgaag
    21061 taattctttc ttggaattta cccatttcac ttgctaaggt tggttgataa cccacagctg
    21121 atggaattct tcctaaaagt gctgacattt cagaacctga ttgtgaaaat ctaaagatat
    21181 tatcaataaa cataagcaca tcaagaccca tttcatctct aaaatactca gccattgtta
    21241 aacctgttaa agcaatacga tttcttgccc ctggtggttc attcatttgt ccataacata
    21301 gagcaacttt gtctaaaaca ttactttctt tcatttcatt ataaaggtca tttccttcac
    21361 gagttctctc acccacacct gcaaatacag aatagccgct atgcttaaat gcaacattgt
    21421 gaataagctc cataataata acagttttac caacacctgc accaccaaaa agacctactt
    21481 taccaccttt tgcataagga gcaagtaaat ctacaacttt aatccctgtt tcaaaaatct
    21541 cactttttgt gctttgatct tcaaaagctg gtggatctct atgaattgcc cattttttat
    21601 caaaagaaat ttcttcacct tcatcgatca aatctccagt aacattgaaa attcttccta
    21661 aaactttctc accaacagga acactaatag gagcacctaa agcctcagct tttaagcccc
    21721 ttaccaaacc atctgtcata tccatagcaa tagttctaac tctattatct cctaaatgag
    21781 ctgctacttc taaaacaagt ttatgttttt ttccttcgct ttcaaaattt acaacaattg
    21841 cttcattaat ttgaggtaaa tagtcgttaa aatctacatc aacaaccgga cctaatacct
    21901 gtgaaataaa tccttgcatt atttatcttc tccttaaaat tttactattt cattgattca
    21961 acaccactga taatctctat aagctcagta gtaatggatt cttgtcttgc tttgttataa
    22021 gctaaattta gttgtttcac tcttgccttt gcgttattag ttgcattatc catagcttgc
    22081 attcttgcgc tatactctgc cgccaaagaa tcgattaacg cataatacat attatactca
    22141 aaatacgttt tcattaaatc ttctaaaagc tcagttcctt ccggttcaag ctctaaaaga
    22201 gaattatgag tctgttcaat actctttggc tcaactggaa taagatgatt aattttaagt
    22261 tcttgggtaa tcatattttt ataaccatta tgaactaaaa tcacttcatc tgtatttcca
    22321 tttaaaaaat catctacagc agcatgaatt acttcacatg ctttctcata atcaggacta
    22381 gaactaagat ggaaatattt ctctaacaat tctatttttt gaaaattaaa atattcaatc
    22441 ccagttttac ctatagctct aagacgaata ttaatatttt ttgcttcata ttcttttagc
    22501 atttcactta ctgtttttaa agtcttaata ttaaaaccac cgcataagcc tttatctgca
    22561 gtgataaata ttaaatctac ggttttaatt tgttcttttt tatgaaacaa agataaacgc
    22621 acatcatctt cattgtgaac aattttattg atctgaaatg aaatttcact caaaatttca
    22681 tcgatttttt gtgcataaat ttttgatctt ttagctgctt cttctgcttt ttttaactta
    22741 gcagtagaaa ctagcttcat agcatttgta gtcttttgag tgttatgaac acttttaatt
    22801 tttcttttaa tttcttttaa attagacata aaagacctta taaatgattt gctttaaact
    22861 cattaatggc tttagctagt ttttcttcca aatcagaatc taaagctttt ttagagcgaa
    22921 tttgctcaaa aatatctgga tgttttgcct caataaaagg ataaattcca tcttcaaatt
    22981 ccttaattct agaaacagca atatcatcta agaaaccttt ggttcctgca aaaattaaaa
    23041 ctacttgttt ttcaacgcta agcggagaat aaggtggttg ttttaagagt tcaaccattc
    23101 tttgtccacg ttcaagttgt tttctacttg cctcatctaa atcactagca aattgtgcaa
    23161 aagcttgaag ctctctatat tgagcaaggt caagtcttaa tgtgcctgaa acttgttttg
    23221 tagctttaat ttgagcagcc ccacctacac gagatactga taaaccaaca ttaattgcag
    23281 gacgaattcc tgagttaaat aaatcagttt ctaagaaaat ttgtccatct gtaattgaaa
    23341 taacattagt tggaatataa gcagaaacat ctcctgcttg tgtttcaatt atcggcaatg
    23401 ccgtcaaaga accagcacct aattcatcat ttagcttgct tgctctttca agcaatcttg
    23461 aatgaaggta aaaaacatcg cctggataag cttcacgacc tggaggacga cgtaaaatca
    23521 aagacatttc gcgataagct acagcatgct tgctcaaatc atcataaaca attaaagcat
    23581 gttttgcgtt gtctctaaaa aattcaccca tggttacacc agtatatgga gctaagtact
    23641 gtaaagccgc aggatctgaa gcaccggcat ttacaacaat agtatattcc atagcaccat
    23701 gttcttctag tcttttaacc acttgtgcca ctgtactttg cttttgacca attgcaacat
    23761 atatacagat aactccttga cctctttgag atataatggt atcaacagca acagtagttt
    23821 tacctgtttg tctatcacct atgataagct ctctttgacc acgaccaatt ggcacaagcg
    23881 catcaatagc tttaattcct gtatgtaaag gctcatgaac actttttctc gccataatac
    23941 cttttgcttt ttcttcaaca aaacgatatt cattagcatt gatcacacct ttagcatcaa
    24001 ttggctcacc taaagcattt acaacacggc caatcaaagc ctcacctact ggaactttaa
    24061 gtaatttctt aagtcttttt acagaagcac cttcttttaa accttctcct tttccaagta
    24121 taacaatacc tacactcgac tcttcaaggt ttaaggccat tcctttatca ccattttcaa
    24181 attctaccat ttctccagcc ataatattct taagtccata taccttagca acaccatcag
    24241 ctacagaaat aatctttcct gtttcttcaa tttcaagatt taaatcaaaa ttttcaattc
    24301 tttctttgat tattgaactg atctcatcag ctttaaattt catttacttt ttctccttag
    24361 ataattttca atatatattc gtttagctta ttttgaagag ctttcataga aaaagaaagt
    24421 tcataaccta attcttctaa ttctatttta acactatcat cttgactgat tttattattt
    24481 agtttaatat ttgcatcaaa ttttttgtta agtttgactt caagatcttt aagattttct
    24541 tgacttaatt tttctttaga atatacaata ccaacaaaaa tattttcttt aaaagctttt
    24601 tgtctttcaa gttctttaac tatttgagga atgcattcta atcttgaatt ttcaatcaaa
    24661 agtcttaaaa aattttgaaa actagaattt ttaata
//
LOCUS       DARGEM010000009        23844 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.009, whole genome shotgun sequence.
ACCESSION   DARGEM010000009 DARGEM010000000
VERSION     DARGEM010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.009"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(36..1034)
                     /gene="mnmH"
                     /locus_tag="SFZ78_000302"
     CDS             complement(36..1034)
                     /gene="mnmH"
                     /locus_tag="SFZ78_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG8211213.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGKQPTQKAFEANLFYTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNFRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
     gene            complement(1024..1509)
                     /locus_tag="SFZ78_000303"
     CDS             complement(1024..1509)
                     /locus_tag="SFZ78_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG8211214.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEHIENLSDEAWQEISQFVRLGVRILKSELHAGGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWVGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNV
                     K"
     gene            complement(1520..2296)
                     /gene="trpC"
                     /locus_tag="SFZ78_000304"
     CDS             complement(1520..2296)
                     /gene="trpC"
                     /locus_tag="SFZ78_000304"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG8211215.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHTPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            complement(2293..3570)
                     /locus_tag="SFZ78_000305"
     CDS             complement(2293..3570)
                     /locus_tag="SFZ78_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8211216.1"
                     /translation="MYRYLLFVLVAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALKKEPQNLYYLDSLAWGYYKQGDCKK
                     AWEILKQTLEDKEFANSDESKAHAKAIKACIKP"
     gene            complement(3543..3917)
                     /locus_tag="SFZ78_000306"
     CDS             complement(3543..3917)
                     /locus_tag="SFZ78_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG8211217.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(3907..4608)
                     /locus_tag="SFZ78_000307"
     CDS             complement(3907..4608)
                     /locus_tag="SFZ78_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG8211218.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGALYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(4614..4763)
                     /locus_tag="SFZ78_000308"
     CDS             complement(4614..4763)
                     /locus_tag="SFZ78_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211219.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            complement(4781..4857)
                     /locus_tag="SFZ78_000309"
     tRNA            complement(4781..4857)
                     /locus_tag="SFZ78_000309"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4821..4823),aa:Arg,seq:cct)
     gene            complement(4886..6961)
                     /gene="fusA"
                     /locus_tag="SFZ78_000310"
     CDS             complement(4886..6961)
                     /gene="fusA"
                     /locus_tag="SFZ78_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG8211220.1"
                     /translation="MSRNTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(6975..7445)
                     /gene="rpsG"
                     /locus_tag="SFZ78_000311"
     CDS             complement(6975..7445)
                     /gene="rpsG"
                     /locus_tag="SFZ78_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG8211221.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(7514..7900)
                     /locus_tag="SFZ78_000312"
     CDS             complement(7514..7900)
                     /locus_tag="SFZ78_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG8211222.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(8020..12573)
                     /gene="rpoC"
                     /locus_tag="SFZ78_000313"
     CDS             complement(8020..12573)
                     /gene="rpoC"
                     /locus_tag="SFZ78_000313"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG8211223.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKQGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPIVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(12566..16702)
                     /gene="rpoB"
                     /locus_tag="SFZ78_000314"
     CDS             complement(12566..16702)
                     /gene="rpoB"
                     /locus_tag="SFZ78_000314"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG8211224.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFILTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(16811..17188)
                     /gene="rplL"
                     /locus_tag="SFZ78_000315"
     CDS             complement(16811..17188)
                     /gene="rplL"
                     /locus_tag="SFZ78_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG8211225.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(17209..17688)
                     /locus_tag="SFZ78_000316"
     CDS             complement(17209..17688)
                     /locus_tag="SFZ78_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG8211226.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(17840..18541)
                     /locus_tag="SFZ78_000317"
     CDS             complement(17840..18541)
                     /locus_tag="SFZ78_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG8211227.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(18596..19021)
                     /gene="rplK"
                     /locus_tag="SFZ78_000318"
     CDS             complement(18596..19021)
                     /gene="rplK"
                     /locus_tag="SFZ78_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG8211228.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(19047..19580)
                     /gene="nusG"
                     /locus_tag="SFZ78_000319"
     CDS             complement(19047..19580)
                     /gene="nusG"
                     /locus_tag="SFZ78_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG8211229.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(19590..19769)
                     /gene="secE"
                     /locus_tag="SFZ78_000320"
     CDS             complement(19590..19769)
                     /gene="secE"
                     /locus_tag="SFZ78_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG8211230.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(19788..19863)
                     /locus_tag="SFZ78_000321"
     tRNA            complement(19788..19863)
                     /locus_tag="SFZ78_000321"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19828..19830),aa:Trp,seq:cca)
     gene            complement(19876..20034)
                     /gene="rpmG"
                     /locus_tag="SFZ78_000322"
     CDS             complement(19876..20034)
                     /gene="rpmG"
                     /locus_tag="SFZ78_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG8211231.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(20087..21286)
                     /gene="tuf"
                     /locus_tag="SFZ78_000323"
     CDS             complement(20087..21286)
                     /gene="tuf"
                     /locus_tag="SFZ78_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG8211232.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(21355..21429)
                     /locus_tag="SFZ78_000324"
     tRNA            complement(21355..21429)
                     /locus_tag="SFZ78_000324"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21395..21397),aa:Thr,seq:ggt)
     gene            complement(21534..21610)
                     /locus_tag="SFZ78_000325"
     tRNA            complement(21534..21610)
                     /locus_tag="SFZ78_000325"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21574..21576),aa:Gly,seq:tcc)
     gene            complement(21617..21702)
                     /locus_tag="SFZ78_000326"
     tRNA            complement(21617..21702)
                     /locus_tag="SFZ78_000326"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21666..21668),aa:Tyr,seq:gta)
     gene            complement(21752..21827)
                     /locus_tag="SFZ78_000327"
     tRNA            complement(21752..21827)
                     /locus_tag="SFZ78_000327"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21792..21794),aa:Thr,seq:tgt)
     gene            complement(21942..22679)
                     /locus_tag="SFZ78_000328"
     CDS             complement(21942..22679)
                     /locus_tag="SFZ78_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8211233.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDKGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(22681..23337)
                     /locus_tag="SFZ78_000329"
     CDS             complement(22681..23337)
                     /locus_tag="SFZ78_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8211234.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(23330..>23844)
                     /locus_tag="SFZ78_000330"
     CDS             complement(23330..>23844)
                     /locus_tag="SFZ78_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEG8211235.1"
                     /translation="PLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRPSFACV
                     IVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAISMPSI
                     SANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFIL
                     LKFEKRLLHA"
BASE COUNT         7462 a         4836 c         3175 g         8371 t
ORIGIN      
        1 gtttttttta aattaaaagt agaaattatc tagtattaaa aaagcaattg cgttttaaaa
       61 tagcctaaaa gctcttcttt ggctttgaag atatcatcag tgtttagctc aaaatctatt
      121 ttttgtggct ttttataact cttatcataa taagccaaaa gcaaagcaat aagcctttgc
      181 cattctcttt gctcataact ttttagcaaa tcctgacgaa aatttacact gatataagga
      241 ctgatcttag caagacattc tttaaatttt aaaggagtca ttttttcttg atagatcttt
      301 tgtatcctgt ctatgcgctt ttctaaagaa caaaaacaat gaattttaaa tgctttttgc
      361 attttttcat aaagctttaa aggtaaaact atttcaccta ttttacgact ttcgctctct
      421 ataaagataa aatcttttaa agagtttaaa gtataaaaaa ggtttgcttc aaaagctttt
      481 tgcgtaggtt gttttcctaa aatatcacca aaagatgatc ctagatgatt tgccattttt
      541 tctaaattta aatgatgggg caaaagctcc aaaagttctg tttttccaca gcctgtatta
      601 ccacaaagag caaaaaaatc taaatttatt tcattatcaa aataatgcgc caaaaaactt
      661 ctataagctt taaagccacc ctttaaacgc accactctat agcccaattc gctcaaaatc
      721 actgcaatag attttgaacg caaaccccca cgagagcagt aaattccgat cttatctcct
      781 atacggaatt tgtgggcaag ctctaagata tgctttgaca tattttgaca aatataactc
      841 gcacccctag ccttagccaa agcttgattt tttttataaa ttgttcctat ttcttgatat
      901 tcttcatcat ttaaagcata aaaatttaaa gctcctatca aatgagaatg caaaaattct
      961 ctagggcttc ttgcatcgat taaaagagag aaattttctt tttgaaattc tgcaaaatct
     1021 acttcattta acatttttaa acgccaaaac aagtttttga taaacttgtt ctatattggt
     1081 accacaaacc ctagtctctc ctatagtggt gataaaatta gtatccccta cccaacgcgg
     1141 cactaggtga taatgacaat gaggagctat cccagcaccc gcatctttac ttaaattcat
     1201 accgatattt accccacctg catggagttc actttttaaa attcttactc ctagacgcac
     1261 aaattgactt atctcttgcc aagcttcatc acttaaattt tctatatgct cttcatgcaa
     1321 ataaggtatt atcataaaat gccctgcaga ataaggatag cggttcatca cgccaaaaca
     1381 atacttagct ctaaaaatca ctcctaattc ttcgtcgctt ttgattttat tagcacaatc
     1441 acaaaaaggg cactcgctct tttctttttc aaaatactca cttcgccatg gtgcatacaa
     1501 atactgcatt tttatccttt taaagcaagg ctttcaaagc ctctccttca tcgttttgac
     1561 gcataaaata ttctccgatt aaaaaagcat caacgcctaa attttgcaaa tgccttaaaa
     1621 aatctttatc ctctaaaccg ctttctgcga taataatttt tgaatttgga atttgtggga
     1681 tgagtttttc gcataaattc atatccatag aaaaatcatc caaattgcga tgatttatgc
     1741 ctataatatc agctcctgaa aaaatcgctt tgctcaaatc ttctttatcg tgaatttcaa
     1801 ccaaagcctc aagacctaaa tgtcttgcaa actcaagcag ttttttaagc tctttcatgc
     1861 ttagcatttt agcgattaat aatacaaaat ccgccccata aaccaaagct tctaaaattt
     1921 gatactcatc aaaaataaaa tcctttcgca acaaaggagt gtgcgtataa cggcgtatca
     1981 tgctaaggta ttctaaactc ccttgaaaaa aatgcggttc tgttaaaact gaaatagcag
     2041 cagctccatt tttttcgtat tttaaagcta tatctaaagg atcaaaattt tcccttataa
     2101 cccctttact tggactagct tttttaacct ctgcgataat tcttacttca ttttctattc
     2161 tttttaaagc agctttaaca tctttaggaa aaaaaggatt cgacgctaaa gatcgtccca
     2221 acatatcata aggcagttgc gccttacgct cttttaaatc ttctttagtt ttttcaaaaa
     2281 ttttatctaa aatcatggtt taatacacgc ctttattgct tttgcatgag ccttgctctc
     2341 atcagaattt gcaaattctt tatcctctaa agtttgcttc aaaatttccc aagccttttt
     2401 acaatcacct tgtttataat acccccacgc taaagaatcc aaatagtata aattttgagg
     2461 ctcttttttt aaggcaagtt tcacaagctc tatacctttt ttaacatcta aatcataatc
     2521 tataagcaaa tatccatagt agtttaaata caaagcattg ctatctttat cgatagcctg
     2581 ttcgaatttt tcttttacag aatcaattac ttttggagtg atttttttag cttcatttgc
     2641 agcttcaaat tcaaaaactg ccgctcgtag aagatattct ttattttttg ttttatgata
     2701 aagagctaaa ctcatttttt tagcatcatc aaagcgtttt aaattctgat acaaagcgag
     2761 tttaatgtca tcatctaaat catactgcaa agaaattttt aaagcttctt ctgttttgcc
     2821 ttgagaattt aaaagctcaa ctaaagccaa tacaaaactt ttatttttgg taagttgata
     2881 aagctcttta tatatacttt ttaaagcttc gatatttttt tcatcaaaat aaattttagc
     2941 aagcaagacg caagttttga gagtgcaacc attggttttt cttgaaaatt ctaaaacatt
     3001 tttaatattt aaagtatcat tcaaaatcgc ataaattcct atgagtttaa ataaaatttc
     3061 ttcattttgc acttgattat aagcagatct atagtatttt gtagcatttt ttaaatcatt
     3121 ttttttaacc aaaatatcac cataaagctc taaatttcta ggatcactat ccttttttgt
     3181 taaaagctct ttcataagtt tttgagcatt gttgatatca tttgaattta aagcataaag
     3241 agcactaagt cgcttaagat tgtcattttg atttaaataa ggctttgcta gattatctaa
     3301 ctctgcttgc ttgtcaagat tgtttgctaa agtaagtaaa aatgcatttt ctaaaaaatt
     3361 agtattatta taatcttgat aaagacttaa aaattcatct ctggcttctt tgtattgttt
     3421 ataatactca taattataag ccttcataac ccttaaatca aaatcattgc ttttatattt
     3481 tgtataatca ggataaacaa cattgatttt tgaacttcca caagctgcca aaaaaaaggc
     3541 tactaagaca aataacaaat acctatacat tctttttcta attccttttg atgtgtttta
     3601 aaatattccc aaaatggaaa agttctgcat tgttttggac gaaaatcgta gatactacaa
     3661 tttctttttt gagtatcaaa aaaaatgcaa gcaaaaccat cttcacattc gacttcctta
     3721 aaactcattt taaagcccac ttttctcaag tatttttcag caaattcttt gctttctaaa
     3781 tttaaatgct ttcttaatgc ttctaattct tccttgctcg caaaaatatt gccactttct
     3841 ccagtgcaac actttccacc gcatttctca caagcatttt catcaaaagc ataagaaaaa
     3901 tttttatcaa atatcataac tttttaacct aaatcttaag tgaatttctt gcatttgttt
     3961 gcttaaaatt tcattttcat atacaaaaaa aggaggtaaa atctcacaag gcgattttga
     4021 accttttttt acctgtatca aaacaagtct tgcttttttg ttttgatgtg tatgtacaaa
     4081 gcaaagcttt gttattttca ttttcatatc ttttaaaata aaacaaattt catctaaagc
     4141 taaagcttca tagcaaaaat acaaagcacc atttggctta agcatagaat ttgttttagc
     4201 taaaaagcta tgcaagggta aaaattcctg aaatttactt atagctttat gctgatcttc
     4261 actcttgtaa gctccttgtc tataaaatgg aggattgcag actatgaagt caaatttttt
     4321 tatgatttga aattgattaa aatcatcatg aaaaatatcg ccttgtattt tgttggattt
     4381 taaatttttt tcaatcaatt ttatattttc tttttgaata tcaatcaaag ataaacttaa
     4441 atttgcaata ttttttttaa gtaaaatacc tatgatacca cagcccgcac ctacatcaaa
     4501 aacagcgcct ttaattcctt gttttaaaat aaaatcagct aaaattaaag aatcactatt
     4561 gtaacgatac ccttgtgata attgtgctag cgtaatcaga tctgacatat attttaatgc
     4621 gttggaattt taatgcgttt tggagattgt tctttaaata tatttcgttc ttttgttata
     4681 ttattatctt ctttaaaatt tactgggctt tgtgctgcca aaaaagaaat tacaaaagtt
     4741 ataaaaaaag caatttttat cataataaca ccccataaaa tggtgtccac ggcgagattc
     4801 gaactcacgg cctcaaaatt aggaattttg cgctctatcc tgctgagcta cgaggacaga
     4861 aagcgggaaa aatcccgcta aaaatttaac cgtttctttt tttgatgatt tcatccgcaa
     4921 catttttagg aacttcatca tagtgatcaa attccataga ataagtcgca cgaccttgag
     4981 tttgacttct aagatcagta gaataaccaa acatttcagc caaaggacaa aatgctgtga
     5041 tgattttatt tccaccacgc tcatccatgc tatttacttg accacggcgt ttgttaagat
     5101 ctccaataac atcacccatg taatcttcag gagtttctac ttcaactttc atcataggct
     5161 ctaagatcac agcacctgct tttctagcac cttctttaaa gcccatagaa gcagcaagtt
     5221 taaacgccat ctcagatgaa tccacctcgt gataacttcc atcataaaca gttactttaa
     5281 catcttccac aggataacct gctaaaacac cattttgtaa tgcttcttga acacctttat
     5341 caactgcagg aatgtattct tttggaatta ctccaccttt gatatcatta acaaattcat
     5401 atccactacc tggctcaagt ggttcaaggc gtaagaatac atgtccatac tgaccacgac
     5461 cacctgattg tttagcatat ttgtattctt gttcaacagt ttttctaata gtttcgcgat
     5521 aagcaacttg tggttgacct acttcagctt caactttaaa ttcacgaagc attctatcaa
     5581 cgataatttc aaggtgtaac tcacccatac ctgaaatgat agtttggcca ctttcttcat
     5641 cagttgaaac tctaaaactt ggatcttctt gtgctaattt atttaaagca atagacattt
     5701 tttcttgatc agctttagtt tttggctcaa ctgcaacaga aataacggga tctggaaaat
     5761 ccattctttc aaggattacc ttatcttttt cacttgcaag agtatcccct gttaaagtat
     5821 ctttaagtcc tacaacagca ccaatttcgc ctgcgtaaag cactttaatc tcttctcttt
     5881 tattagagtg catttttaac aaacgaccaa ttctttcttt tttatcttta gttgagttat
     5941 aagcataaga gccactttcc aaacaaccac gataaacacg cacgaaagta agttgtccta
     6001 caaatggatc tgtcatgatt ttaaatgcaa gccctgcaaa ctcgccatca tcagttgatt
     6061 ttacagaaac ttctgtacca tcttcatatt cacccttgat atttgccact tcatcaggag
     6121 ctggcaaata agccacaaca gcatcaagta aaggttgaac ccctttattt ttaaacgctg
     6181 taccgcaaag cataggaacg atagaaagac ttaaacatcc tgctttaatc cctgttttaa
     6241 tctcttcaag acttaattct tctccgccta aatatttttc catcaactca tctgaagttt
     6301 cagaaactgc ttctatcatt tttgtgcgat attcttctgc cttttcttta agttcagctg
     6361 gaatttcttt ttctacataa tccgttggct tagtatcatc ttcccaaact aaagctttca
     6421 tagttacaag atcgattacg cctttaaaat tatcctcagc accgattgga atttgaagtg
     6481 gaactggatt agcttttaaa cggttgcgaa tttgatcttc tacattataa aaatttgcac
     6541 cgattctatc cattttgttt acaaatacta ttcttggaac accatattta tttgcttgtc
     6601 tccaaactgt ttcactttga ggctgcaccc cacccactga acaaaatacc gcaacagcac
     6661 catcaagaac acgcatagat ctttcaactt cgattgtaaa atccacgtgg cctggagtgt
     6721 caataagatt gatttgatga tctttccaaa aacaagttgt agccgcagaa gtgatagtaa
     6781 tcccacgctc tttctcttgc tccatccagt ccatagttgc agcaccatca tgaacttcac
     6841 cgattttatg actcatacca gtaaagaaaa gaattctttc agatgtagtc gttttacccg
     6901 catcaatgtg agcagcaata ccgatatttc taactttttt taaaggagta tttcttgaca
     6961 tacacactcc ttccttacca acgatagtga gcaaatgctt tatttgcttc agccatttta
     7021 taagtatctt ctttcttctt aaatgaagca cctttgctat tagcagcatc caaaagctca
     7081 gctgcaagtt tatcaatcat agttctttcg cttctttttc ttgcaaaaga aataatccaa
     7141 cgaatcgcca aagcttgttg tctagcaggg cgtacttcaa ctggaacttg ataggtcgca
     7201 ccacctacac gacgagattt tacctctaat aaaggcttaa tattttcaat cgcatcatta
     7261 aaaatatcaa tacctttttt ctcgccacct tttttatcga tagcttctaa agcaccatac
     7321 ataattgttg tagctgtgct ttttttgcca tcatacatta aagaattaat aaattttgtg
     7381 attactttat taccataaat cggatcaggt aaaacttctc ttaccggagc ttttcttctt
     7441 ctcattattt ttccttcaaa ttttaaattt tactcaaaca aaatcaaatc taacggattt
     7501 gtctgtatga agattatttt gcagcgcctg ctttagggcg tttagcacca tatttagaac
     7561 gagaaactgt tctttttgca acacctgctg tatcaagagc accacgaacg atgtgatatt
     7621 taacccctgg taagtctttt accctaccac cacgcactaa aacaatgctg tgttcttgta
     7681 agttatgacc ttcaccgcca atatagctga tcacttcaaa gccactagta agtcttactt
     7741 tggcaacttt tcttaacgct gagtttggtt ttttaggtgt tgtagtataa accctagtgc
     7801 aaactcccct tctttgtgga caatttttaa gcgctggaga tttagatttt tctaaaactt
     7861 ttttgcgctc ttttctaacc aattgattta tggtaggcac aataattcct ttctttaaaa
     7921 atgtaataaa ctttggatga tatctaattt ttgcttatat tttagttaaa aagattgaaa
     7981 atgaggaaat atagccccga agggctataa aatagagttt tattcttgtt ctttaagttt
     8041 taaattttgt tcgccataaa gccctgttcc aacaggaatc attctaccta gaataacatt
     8101 ttcttttaaa tcttctaagt agtcaaattt acctgctata cttgcttcag ttaaaacttt
     8161 ggtagtttct tggaatgaag ccgcagaaat cacactatca cttccaatcg ctgctcttgt
     8221 tacacctaaa agcacaggct cggcaatagc tggttctcca cccattctaa tgattctttc
     8281 attttcttca cggaatttac gtcttgaaac caaatcacct tcaataaatt tcgtatgtcc
     8341 actatctaca acttttactt gtcttagcat ttgagaaacg ataacttcta tatgtttatc
     8401 agaaatcaca acaccttgtc cgcgataaac ttgctgaatt tcagaaatca aataataatg
     8461 caaggctttt tcacctaaaa ttttaagcac atcatgactc gaaacaactc catctgtaag
     8521 tttttcacct gcatgaataa actctccatc tcttacttga atatgttttg atttgtcgat
     8581 taaatactca gcacttgttc catcttctgc ttggataata attctttctt tagaacgcaa
     8641 aggcttatca aaacgaacaa caccatcaat ttctgcaatc acagccgcat tttttggttt
     8701 tcttgcttca aaaagttcag aaactcttgg aagacctcct gtaatatcct ttgatttagc
     8761 tgctgctttt ggagtttttg ctaaaatatc tgcttgagca attttatcgc catcatgaac
     8821 aaaaataacg gtttttggtt caaggtgata acgcacagct ttatcacctt ttcctgcaat
     8881 taccaaagtt ggtctaactc cgctaggtaa atactcatta attactaaag aacgcttacc
     8941 tgtagcttca tcaatttgct catcagcact ataacctgct tcaatatcct caaagcttac
     9001 aacaccatca atttctgcaa tgatagtatt attataagca tcccattctg caatcacttt
     9061 tctttctttt ttaggagcac ttgcaatgat agtatttgcg tcatcgattt tttcactatc
     9121 gttaaattct atcttagatt ctcttgggat atagtgtctt tttgcttctc tatcattttc
     9181 atcagcaatc actacaaaga atcctttttc tttaacaata tcaccttttt taacattttt
     9241 tactctatct aaaccatcgc ctttaaggat gtaaaatttg agcgttcctt tttcgcctgc
     9301 tttgatattt tgaactatag gctcgccatc ttctactaaa atttcactcg caaaaggaat
     9361 acgatttggt acattccaac cctctttaat cacttctacg atactttcat tttcttctac
     9421 ttgcatgccg ctttgatatg gcaaataaag ttttccatct atactgccac ttacacctgc
     9481 taattcattt ggtttagcaa gatcgtattt tcttagtatg tattttactt cttgtttttt
     9541 atctttaata gaaacaatca catcttcatg aatattttct atattaatca cacctttaaa
     9601 tggagttttg atttttggct ccacaagtaa aaccgccgca tttctacgat ttgctacgat
     9661 atttttacct tgtttgtttt tataagtttt aagattataa aatcttataa aaccttcttt
     9721 ttgtgcgctt acttgtctat cttgtaaatc cgtacttgca gttcccccgc tatggaaagt
     9781 tcttagagtt agctgcgttc ctggttcacc gatagattga gcggaaataa ttcccactgc
     9841 ttcgcctggt tttactaatt taccttcacc aagattgata ccataacatt ttgcacaaat
     9901 tcctttttta gctttgcagg tgataggagt gcggatattg acacttttta taccgctttc
     9961 gccaagaatt tttgcttttt cctcatccat taaagtacct tctgcaaaaa gcacagaatt
    10021 tgtaatagga tcaatcacat cctcagctaa aaccctgcct aaaattcttt cttctaaagt
    10081 ttctataata gaactatctg cggtaatttc attgatttca acaccctcat gtgttccaca
    10141 atcttcaatg gtaattttta cattttgtgc aacatcgatg agttttcttg tcaaataacc
    10201 cgcatttgct gttttaagag cggtatctgc aagacctttt ctagcaccgt gagttgaaat
    10261 aaagtattca agaacattta gcccttcacg gaaatttgaa ataataggcg tttcgataat
    10321 agaaccatca ggtttggtca taagtcctct catcgcagca agctgagaaa tttgagctgc
    10381 actaccccta gcaccagaat ctgccatcat ataaatagag ttaaaacctt ctttatcttt
    10441 ttctacaagc ttcatcattt cttttgaaag aacattgttt gtacttttcc aaatatcaat
    10501 gattttattg tatctttccc ctgaagtaat caaaccgaga ttataagaat tttgaatttc
    10561 tcttacttgt ttttttgctt catcgatagc tttttgttta tcattaggaa caataatatc
    10621 tgcaatcgaa attgaaatac ctgctttagt tgcatattca aaacctaaat ttttaagtct
    10681 atccaagaaa cttgctgtaa tctctaaacc accttgttta taaacataat ccacaagcgc
    10741 agcaatgtct tttttcttta agactttatt ccagctattt tcaggcacaa aatcaggtaa
    10801 aatggattta ataatcaatc ttcctgctgt agtggtaatc tttctaccat ctaccatagt
    10861 ttgtatgctc gcatgaatat ccaaacactt gctttcaagt gccatcatca cttcatcaat
    10921 gcctgtacaa attttatgcg aacctttagc acctgctttt tccaacgaaa gataataaat
    10981 tcctaaaacc atatcttgcg atggaacggt tacagactta ccgcttgctg gtaaaagaat
    11041 attcattgat gaaagcataa gcactttaca ttctgcaata gcctcttgag aaagcggtac
    11101 atgcactgcc atttgatccc catcaaagtc tgcgttaaat gctgcacaaa ccaaaggatg
    11161 aagttgtata gccttacctt ccactaaaac aggatgaaaa gcttggatag aaagcttatg
    11221 caaagtaggt gcacggttta gcataacagg atgtcccttt actacctctt ctaaacattc
    11281 ccaaacttca ttggttttgt tttctatcat ttttttagct tgttttactg tggttgcata
    11341 acctttttct tcaagcttag ctaaaagatg tggcttaaag agctctaaag ccattttttt
    11401 aggtaaacca cattgatcca ttctaagttt tggacctaca acaataacac tacgacctga
    11461 gaaatccacc cttttaccta gtagattttg tctaaaacgt ccttgtttcc ctttgatgat
    11521 ttcacttaaa gattttaatg ggcgtttatt tgctcctttt acagcattag cacgacgacc
    11581 gttgtcaaaa agtgcatcaa cagcctcttg aagcattctt ttttcatttc tgataatgat
    11641 ttcaggtgca tcaagttcca taagtttttt aagacgtgta tttctattga taacacgacg
    11701 atataagtca ttcacatcag aaactgcaaa ttttccacca tctaaagcca ctaaaggacg
    11761 caaatctggc ggtaaaactg gaagatttgt aatcatcatc cattcaggac gatttggtac
    11821 ggcttcatca ctatcggtat tggcgtttaa atttgaattt aagaaatttt ctactacttt
    11881 taagcgttta atgatggttt ttttcttagc ctctgaattt gtagccgcca tttcttcttt
    11941 aagctgattt aaaagtgcca caagatctaa atttgcaagt aaatcacgaa caacttctcc
    12001 acccattctt gctttaaagc cactattttc atagcgttgc attaaatttt gatattgctc
    12061 ttcgtttaaa acatcacaat attctacttt tttggtgctt tcattatcat agaaagcatc
    12121 gcctggattt tcaacgatat aagcttcata ataaagcaca cgctcaagat ctttcatctt
    12181 aacacccaaa agcgttccta tacggcttgg aagagaatta acataccaaa tatgagccac
    12241 aggagttaca agctcgatat gccccattct agaacgacgc acttttgaat ttgctacttc
    12301 aacaccacat ttttcacact taacgccttt aaaacgcatt tttttgtatt taccacaaag
    12361 acactcataa tctcttatag gtccaaaaat ctttgcacaa aaaagcccat ctctttcagg
    12421 ctttaaggtt ctataattaa tagtttctgg tttttttact tctccataag accatgattt
    12481 gattttttca ggacttgcaa gtctcagttg aaatgcttca aaatctctag gtcttgcatc
    12541 ttctttaatt tctattactt taaatttact cattatcttc atccttatca aaaatctcaa
    12601 catctaaagc aagagattta agctcattgg ttaatataaa aaatgtttca ggaattcctg
    12661 ttgctggaac attttcacct tttgtcaatg ctttataagc actaaatcta ccttctacat
    12721 catctgattt tatggttaac atttctctta aagtgtgagc cgctccataa gcttcaagtg
    12781 cccaaacttc catttctcca aatctttgtc ccccaaagag tgctttacca cccacaggtt
    12841 gttgggtaac caagctataa ggtcctgtac ttcttgcatg aactttttca tcaaccaagt
    12901 gatggagttt tagcatatac atacatccta catgaacacg ctctgcaatt ttttcccccg
    12961 tgcgtccatc ataaagttct gttttgccat ccatatctat cttagccatt ttaaaaagct
    13021 tgctaaattc ttctatattt acaccttcaa aaacaggagt agaaaattta actcctttac
    13081 tccagtctct agcatagttt aaaagctctt catcgcttaa gcttttaata aattcttttt
    13141 cgtttgcaag tcttggaata gaacaaattt caagcatttt cgctcttaat tctttaagaa
    13201 aatctttttg ctttctatca aaaatttctt gaatttgatc cccaagtcta agtccaacta
    13261 aacctaaatg actttctaaa atttgaccta tattcatacg acttggaacg ccaagtggat
    13321 taagcgcaat atccacactc ttaccatttg gcaaataagg catatctact tcaggaacta
    13381 tagttgaaac tataccttta tttccatgac gtcctgccat tttatcaccg actttaagct
    13441 ttctttttgt agcaatataa actttaacaa gcttaattac cccacttggt aaaatatcat
    13501 ctttttctaa aatttcaagc ttttcatcgt gttctgcttt taattttttc ttctcatttt
    13561 ggaaatgatt ttttaaatca tcgtattctt tttgaatctc tttagaataa gctttaatca
    13621 aagttgttaa agtaaaacga ttgatttttt caagttcgct aatatctgca gtttgtcctt
    13681 ttttataatt tttatctcca attttttgat cgctatttaa agaagctttg gaaagaagag
    13741 cacaaacacg aagcatttct tctctatcca tcatcaaaag tctatcatga tgctcttttt
    13801 ctaaagccat tttttcttta tcataagatt ttattgcgcg atcatctttt tcatagcctt
    13861 ttttagtgaa aattttaaca tccacaacaa caccctctaa agaagcggtt gcataaaggg
    13921 atttattcac aacatgtcct gctttttctc caaaaatcgc tcttaaaagt ctttcttcag
    13981 gagttggttt aacctcacct tttggagaaa ccttacccac caaaatcata cctggtttga
    14041 tatgggtacc aatttttgca ataccgctct catcaagatg cgcaacatct tcttctttta
    14101 catttggaat atctttggta atttcttcta taccgtcttt tagttctctt gcttcaattt
    14161 ctttttcata aatgtgcacg cttgtaaaag tatcttcacg aataattctc tcacttacaa
    14221 ctatagcatc ctcatagtta taaccattcc aaggcataaa agcgattaaa gcatttttac
    14281 ctatagcaag ttcgccttga tccatagaag gaccatctgc gataatttgt cctgctttta
    14341 ctatatcacc ttttttaaca atagggtgtt gaatataatt tgtattttga ttggttctta
    14401 aatttttctc catagtgtaa tggtcaataa atggaccttt atcatcttca cctaaaatga
    14461 aaatgctttt attatccact ttctcaacca caccgccacg ctttgcttta acagcttccc
    14521 aagcatcacg cgcaataatt tgttccatac ctgttcctac tatcggagct gaagcagtaa
    14581 gaagtggcac agcttgacgt tgcatgtttg aacccattag cgctctgttt gcatcatcgt
    14641 gctctaaaaa cggaatcaaa gaagctgcaa ctccaacaac catacctgag caaagatcga
    14701 ttaattgcac ttcttcgcgt cttgcaagta tagtttcacc atcttgccta gcctcaacaa
    14761 attcttctac tatattgcct ttagcatcaa ccttagttga agctggtgcg ataaacaagc
    14821 cttcttcttg tgtcgctgta agataaacaa cttcattagt cactttacca tttacaactt
    14881 ttctatatgg cgcttcaaca aagccaagtt catttacttt tgcataagta gaaagagtgt
    14941 taatcaaacc aatattttga ccttcaggtg tttcaactgg acaaattcta ccataatgtg
    15001 tcgcgtgaac atcacgcact tcaaaacctg ctctttcttt tacaagtcca ccttcaccaa
    15061 gcgctgacaa acgacgctta tgagtaacct cgcttaaagg gttggtttga tccataaatt
    15121 gcgaaagttg acctcctgta aaaaattcaa tgatagttgt agtaatcatt ttaggattga
    15181 ttaaatcata aggcattact ttatcaagat ccgcatttaa agaagtaaat ttatctctga
    15241 tcgccttttg catttttgca agacctaaat gaagttcatt ggctaaaagt tcacctatag
    15301 aacggatacg acgatttcct aaatgatctc tatcatcaat atgtccttta ccatttttta
    15361 ctttaattaa atattttgca gttttaataa tatcttcatt agtcaaaaca gtaacatact
    15421 caggtacttc aagacctaat ttatggttca ttttcatacg acccaccttg gtaagatcgt
    15481 atctttcagg attgaagaat aaatcattta caaaagcctt cgctgcatct tttaccacag
    15541 gttcacctgg gcgcataact ttgtaaattc taatcgcagc taaatcattt tcatcatcga
    15601 tattttcact ttgtttaaga agttttagag tttctccatc ttgagcaaag gagttaataa
    15661 tcgctgcatc aacgccatta gccaagtcat ttgctatatc aaaacttttt tgctctttaa
    15721 tcttagcaag cttactctca tctaacaaag ttaaagaatc aaataaaacc tctccacttt
    15781 ctttatcaat aataggattt gctaaataac gattaagtaa aatttctaca ggatattcta
    15841 tccattttaa accgtcttta ataagctgtt ctgctttttt ctttgtaagt ctttttccag
    15901 cttgatgaac gatttttcct ttttcatctt taatatcata ttctattcta tccataaaat
    15961 catttggatt aaattctgtt aaaaatttat cttttttcac atgtatagtc tgaataggat
    16021 aaaacaactt aataatatct tgttttttat accctaaagc tctaaaaagc atagttacag
    16081 gaacttttct acgcttattg attcttacat acaaaacatc tttggcatcg tattcaaaat
    16141 aaagccacga accacgatca ggaataattt gtgctgtata aacaagctta tttgcaaccg
    16201 ttgaactttc ttcttcttta aaaataacac cagggcttct atgtaattga tttacaacca
    16261 ccctctcaac cccattaatg ataaaagata cacgatctgt cattaaagga atttcgcgga
    16321 tataaatttc ttgttcttta atatctttta cgccaacttt ttcccctgtt ttttcatctt
    16381 tttcatgcag agtaagacgg attttcattt ttaaatttac agaataagtc aaacctcttt
    16441 ccatgcattc gcgaatggta tattttggct tgcctatttc actactaaca tattcaagac
    16501 tcaatctatt ttgcggatca tgaataggaa aaattgattt aaaaactttt tctataccac
    16561 tttcaccatt atcaagattt aaaaaataat caaaactctt tttttgtaat tgtagaagat
    16621 ttgggatttc tatttgtttt gaaatgtttg agaagtctac tcttaaacga tttcctaatt
    16681 tattatctaa catatcgcac atacctcatg gtaaattttg taaatttaaa aaagaagacc
    16741 taaaaattag gtaaaaataa aaaaagaaga cttgccttgg caaatcttct tctaacttta
    16801 aagcttaaaa ttacttaagt tctactttag caccagcttc ttcaagttgt tttttagctt
    16861 cctcagcttc agctttagcc acaccctctt ttagagttga aggagtttgc tcaactgcat
    16921 cttttgcttc tttaagacca aggcctgtaa gagcacgaac gattttaata acttcaatct
    16981 ttttagcacc gccatcagtt aaaacgatat caaattcagt tttttcttca gcagcagctg
    17041 cagcaccacc agctgcagca ccaccagcta tcattacagg agcagcagac acaccaaatt
    17101 tttcttcaaa ctcttttaca agttctgata actcaagaac acttaaattt gaaatatatt
    17161 ctaatacatc ttctttagag attgccattt tttatccttt tatttaattt attcagattc
    17221 ttttttattt ttaagcgcat ttaaacctat tgtgaaattg gtaattggcg cattccaaac
    17281 ttgcaaaagc atagcaagca actcattgcg tgaaggcatt ttagcaagag ctttaacctt
    17341 agcaacatct gcaacttcgc cttcaatatg agctgttttg atttcaaatt tatcgttatt
    17401 ttcttcaaat ttagcagcta cttttgaaac acctagctga tcttcgcccc aaagataaat
    17461 atttgtatct ttaagaacta gacctgtttt accggaattg ttaagagcaa tgttagccaa
    17521 agtattttta acaatttgaa cttttacatt gttttctctt gcattatttc taagctcttc
    17581 tagttttttt gtgctaagac ctctgtaatt acaaactaca atagcttcac tagctttaaa
    17641 accttcttca agtttagcaa taatctcaac tttttcgctt ctagtcacat tttctccttt
    17701 ccgattgaga tttcaagtag agtggaaatc caattaagct tacgcctcga ctatcttcaa
    17761 tctaaaataa acatctcaaa aaatcaaaaa ttttttcaaa tgtttatttt aaaacaaaag
    17821 agttgcaaaa aagcaactct tatttcatat caagcaattc ttgtgtttca agctttacag
    17881 aagggctcat tgtcaaagat aaagccgcat ttttaatata tctaccttta gctgcagcag
    17941 gtttatgttt gttaattgcc tttacaaaag tgctaacatt gtcccataat tgttctttgg
    18001 aaaaacttac tttaccaaga cctgcatgga tatttccttg cttatcaaca cggaaattta
    18061 cctgaccact ttttgcatta ttaactgctt gagcaacatc catagtcact gttccagttt
    18121 taggatttgg cattaaacct tttggcccta aaattctacc aactttacca acaagtccca
    18181 ttaaatttgg agtagcaatc aaaacatcaa aattcatatt acctttttga atttcttcta
    18241 ctaaatcatc gctacccaca atatctgcac cagcattttt cgcttcatca gcttttgcgt
    18301 cttttgcaat tacagcaaca cgaacttttt tacccgttcc agcaggtaaa acaacagatc
    18361 ctcttaccat ttgatctgca tgtcttggat caacattgag ttttaaagca atttctacag
    18421 tctcatcaaa tttagcagac tttaaagtct ttattgtatc aattgcatcg cttaaagcat
    18481 actctttatt tgaatcaatt ttttgtgata attcttttaa tctttttgct atcttagcca
    18541 tttattttct ccgcatttta aagtgctacc gccttttacc ttggcggtga aaggattaat
    18601 ctacgatttc aacacccata gaacgagctg aacctgcaat aattttagca gcttgatctc
    18661 tatctttagt atttaaatct gcaattttct tatctactat ttctaaaact tgagcacgag
    18721 ttaacttacc caccttattt ttaagtggat tatccgtacc tttagaaatt ccagctgctt
    18781 ttttgatcaa atccgtagct ggcggttgtt ttgtaataaa agtaaaactt ttatctgcat
    18841 aaacagtgat aacaacaggg atattaaaac ctgccatatc ttttgttctt tcattaaaag
    18901 ccttacaaaa ctccataata ttaacacctt gctgacccaa agcaggacca acaggtggtg
    18961 atgggtttgc ttttgtggca gcaatttgca atttaatttc gcctacgact tttttagcca
    19021 taacaaatct ccttacttga tataaattaa attattttct caacttgaga atataagatc
    19081 tccactggag ttgaacgtcc aaaaatagaa acatttaatt ttaataaacc acgaaccata
    19141 tcatactctt ctacaattgc agtaaagttt gcaaatggcc cttctgtgat tctcacattt
    19201 tccccttctt caaaagaaat ctttggttta ggcgctgcac gattgtgaac tttttccaaa
    19261 atcaaattaa tatctttttc tgttaaaggg gttggctttt tggattctcc aataaaacga
    19321 ccaacctttg gaagagattg aatgcgatgc caaagctctg tatttaaatc aagaagtgca
    19381 aaaacgtatc ctgaatacaa acttctttcg ctaatcttct cctttccatt cttaaattca
    19441 ataacatctt cagttggaac aacaatttct ttaagttgtt cttcaattcc gttatctttt
    19501 actaaatttt caatggctct tttaactgcc atttcactgc cagcataagt ttgaattgca
    19561 taccatttat gagtactcat ttactctcct tatacgatcg cagaaacaat agaggacata
    19621 agccaatcca ctaacgccaa aaacaaagaa atcaccacaa caaccacaaa aactgtaata
    19681 taggcatttc ttacctgttc ttttaaagga aaaattactt tccttaattc ggcttttgat
    19741 aatttaaaat aagttattaa tttttccatt tatttaaacc ttaattatgg cagggcaaga
    19801 gggattcgaa cccccaacca tcggatttgg aatccggcgc tctaccgttg gagctattgc
    19861 cctaagggcg caagcttaac tttttaactt aacttctttg tgaagtgtat gtttttttaa
    19921 tcttgggcaa tattttttta attctaattt ttcagtagta tttttactat ttttataggt
    19981 gctataatta atatcaccac attcttcaca ctttaaacca actttaattc tcatttcaat
    20041 tttccttaaa aaattaaagc caagctttta acttggcttt attaaattat ttaataattt
    20101 tagaaacaac acctgaacca acagttttac caccttcacg aatagcaaaa cgagttcctt
    20161 cttcaagtgc tactggagcg atcaagctta cagtaattct cacattttca cctggcataa
    20221 ccatttcaac accatcagct aatttaatcg aacctgtaac atcagttgtt cttacataaa
    20281 actgtggtct atagttgtta aagaatggag tatgtctacc accttcatct ttatttaaga
    20341 tataaacttc agcttcgaag tcagtgtgtg gagtaattga ttttggttta gcaagaacca
    20401 taccacggat aacttcttct tttttagtac cacgaagaag aacacctaca ttatctcctg
    20461 cttcgccttg atccatttct tttctgaaca tttcaacacc tgttacagtt gttgtttgag
    20521 tatctttaat accaacgatt tcgatagtat cacctacttt tacaacacct ttttcaattc
    20581 tacctgtaac aacagtacca cgacctgaaa ttgagaaaac gtcttcaatt ggcatcaaga
    20641 agtctttttc agtatcacga gttggagttg gaatatagct atcaactgca gccataagat
    20701 ccataatttt tgctgaccat tcaccatctt gtccagcttt agcttcttca agagctttta
    20761 aagcagaacc agaaataata ggtgtatcat cgcctgggaa atcataagag cttaataatt
    20821 ctctaatttc catttcaact aactctaaaa gttcagcatc atcaaccata tctgctttat
    20881 tcataaaaac aacaatatat ggaacgccta cttgacgaga aagaagaatg tgctctctag
    20941 tttgtggcat agggccatct gcagcagaaa caaccaagat cgctccatcc atttgtgcag
    21001 cacctgtaat catgttttta acataatctg cgtgacctgg gcagtcaacg tgtgcatagt
    21061 gacgattgtc tgtttcatat tcaatatgag aagtagcaat agtaatacca cgctcttttt
    21121 cttctggagc attatcgata ttatcataat ctttaagctc tgctaaacct cttctagaaa
    21181 gaacagcaga aatagcagct gttaaagtag ttttaccatg gtcaacgtga ccaatagtac
    21241 caatatttac gtgtggctta ttacgtgaaa atttttcttt agccattttt ttcctccgta
    21301 taaaaaataa attgagcaaa gcaagtctta tatctatata attttttcaa ttcatggagc
    21361 tcatagcggg aattgaaccc gcgacctctc ccttaccaag ggagtgctct acctctgagc
    21421 catacgagcg ctcagaaaaa ttatacacaa taacagacaa caaaaactct taaatgggat
    21481 atatactgta agttaaaggt tttaaaatac agctcccagt tcttttaaat tattggagcg
    21541 ggaaacggga ctcgaacccg cgaccctcag cttggaaggc tgatgctcta gccaactgag
    21601 ctactcccgc aaagcatggt ggtgagtcgt ggattcgaac cacggaaggc gaaagccagc
    21661 agatttacag tctgccctcg ttggccactt gagtaactca ccataaaaat attgcttttt
    21721 caatattctg gtcaaacact gctaaaataa atggagctgg ttaagggact tgaacccccg
    21781 acctgctgct tacaaggcag ctgctctacc aactgagcta aaccagcaaa aataaaagta
    21841 agattataac tcaaaaaaaa aattttgtca agactttttt agtttttcta taaaatttta
    21901 gtcttgtaaa ttttattatc ataaaccaat attattttta tctatttatg ataatcaaat
    21961 aaatttaaaa atttctttgc tctttcgctt tttggatttt taaaaaaact tttaggatca
    22021 ttttcttcga tgatttttcc tttatccata aaaataattt tatctgctac agctttagca
    22081 aaacccattt catgagtaac aataagcata gtcataccct cttttgcaag atttaacatc
    22141 acttctaaaa cttctctgac aatctcagga tccagcgctg ctgtaacctc atcaaaaagc
    22201 attaactcag gattcatgca taaacttctt actatggcaa ttctttgctt ttgtcctccg
    22261 ctaagttctc ttggataagc atgaatttta tgcaaaagcc ccaccttttc aagccaaatt
    22321 ttagcctctt ttaaaacctc atctttcttt cttttttgca ctttcatagg ccctagaagt
    22381 atattttctt caacacttaa atgctcaaaa agctcataag attgaaaaac cataccaact
    22441 ttttgacgca ttcttggcca ttctttaaaa tctttatcta ttttctcatt atcaatataa
    22501 atattaccac ttgcaatctc ttcaagccca ttaatacaac gcaaaagcgt agattttcca
    22561 catccgctag gacctaaaat caccacaact tctttagcct taacttctaa attaatatct
    22621 tttaaggcgt gatgcgaacc ataatacttt tgtaaatttt ctatttttag tatactcatt
    22681 ttagctccat tttttctcta attttcttga atataaagtg ataggataac aaagtataaa
    22741 aaagataaaa aaaatcaaac cataaataat aaaaggtgca aaatcatttc tattatgaaa
    22801 ttctataatt tgttgcccta cttttacaag ctctaccgcg ccgattaaat aagcaaaggt
    22861 tgtactttta atcatacgag taagtaaatt catgctcata ggagttaaac gacgcatagc
    22921 ttgtggaata ataacataag caaaactttg caccgtattt aaacctaaag atgatgcact
    22981 ttcatactga tgttttggaa tactctgcaa ggaaacacgc accaaatcca tcatctcaaa
    23041 acaaccccaa atgctaaaaa caataatagc tgcacttaca gaactcaaat cccacccaaa
    23101 ccatctagga aaaccaaaat acaccacaaa aagccatact aaaagtggca taacacgcac
    23161 aaattctaaa cccaaacgac aaaaagcata gatataggta tttttaaaac tcattaaaat
    23221 tcctaaaaat aacccaccta tcgaagtaat aataatgctg ataaatgaaa tttcaagagt
    23281 gacaaaaagc ccttgccaga gtcttaaaag cgtatcggta tttaaaagtt caagcatgaa
    23341 gcaacctttt ttcaaacttt agcaaaataa aagacaaagg taaaataatg cataaatatc
    23401 ccataaacaa caaaaacaat agctcatctg tcttataggt taaggaattt aaactcttca
    23461 ttaaattcac caaatctggc aaggcaataa tactaacgac tgaagtttct ttgattaaaa
    23521 atataatatt agcactaata cttggcatag aaatagccaa agcttgcggc aaaatcacat
    23581 aacgcaaatt tccaaatttt gaaaaaccca aagaaagtcc cgcttcaaac tgctgttttc
    23641 ttatggcttc aaatcccgct cttaaacttt cagccatata agaacctcct aaaaaactaa
    23701 gtcctactat aacacaagca aaagaaggcc ttaaagtttc ttctacgctt aagcaaatca
    23761 aatcaagcgg tggaatttgc tctaaatgta tattaaattt aggtaaagca taatataaga
    23821 aaaaaagttg aattaataaa ggcg
//
LOCUS       DARGEM010000010        22774 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.010, whole genome shotgun sequence.
ACCESSION   DARGEM010000010 DARGEM010000000
VERSION     DARGEM010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22774
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.010"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ78_000331"
     CDS             <1..171
                     /locus_tag="SFZ78_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211236.1"
                     /translation="IEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMK
                     NLDLEMGMDKKV"
     gene            168..449
                     /locus_tag="SFZ78_000332"
     CDS             168..449
                     /locus_tag="SFZ78_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG8211237.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(446..1246)
                     /locus_tag="SFZ78_000333"
     CDS             complement(446..1246)
                     /locus_tag="SFZ78_000333"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8211238.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTKK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(1243..2367)
                     /locus_tag="SFZ78_000334"
     CDS             complement(1243..2367)
                     /locus_tag="SFZ78_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8211239.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            2453..3748
                     /locus_tag="SFZ78_000335"
     CDS             2453..3748
                     /locus_tag="SFZ78_000335"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8211240.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFTCFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            3751..4032
                     /locus_tag="SFZ78_000336"
     CDS             3751..4032
                     /locus_tag="SFZ78_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG8211241.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            4029..5654
                     /locus_tag="SFZ78_000337"
     CDS             4029..5654
                     /locus_tag="SFZ78_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8211242.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(5551..6036)
                     /locus_tag="SFZ78_000338"
     CDS             complement(5551..6036)
                     /locus_tag="SFZ78_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211243.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            6132..6623
                     /gene="mobB"
                     /locus_tag="SFZ78_000339"
     CDS             6132..6623
                     /gene="mobB"
                     /locus_tag="SFZ78_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG8211244.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            6625..7467
                     /locus_tag="SFZ78_000340"
     CDS             6625..7467
                     /locus_tag="SFZ78_000340"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG8211245.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            7460..7657
                     /locus_tag="SFZ78_000341"
     CDS             7460..7657
                     /locus_tag="SFZ78_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211246.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            7667..9553
                     /gene="metG"
                     /locus_tag="SFZ78_000342"
     CDS             7667..9553
                     /gene="metG"
                     /locus_tag="SFZ78_000342"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG8211247.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            9557..10498
                     /locus_tag="SFZ78_000343"
     CDS             9557..10498
                     /locus_tag="SFZ78_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211248.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQTLVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKNQKIIFDFNKIDDFK
                     IYFIDDKFEITPFGSSSQAFIVSNNQNTFEFWKEKFKNIKDFKIASKNSLFCDFSYNQ
                     LSDLRKLKNFKYCLILENYDIFEQEFENKENQTPSLF"
     gene            complement(10490..10942)
                     /locus_tag="SFZ78_000344"
     CDS             complement(10490..10942)
                     /locus_tag="SFZ78_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG8211249.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            10997..13543
                     /locus_tag="SFZ78_000345"
     CDS             10997..13543
                     /locus_tag="SFZ78_000345"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG8211250.1"
                     /translation="MSFIQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYEDK
                     ATLARRADKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTK
                     EGYYSIFGSAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            13593..14831
                     /locus_tag="SFZ78_000346"
     CDS             13593..14831
                     /locus_tag="SFZ78_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8211251.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            14828..15577
                     /locus_tag="SFZ78_000347"
     CDS             14828..15577
                     /locus_tag="SFZ78_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG8211252.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFIGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            15574..17307
                     /locus_tag="SFZ78_000348"
     CDS             15574..17307
                     /locus_tag="SFZ78_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG8211253.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSANIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASVNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            17304..18377
                     /gene="trmA"
                     /locus_tag="SFZ78_000349"
     CDS             17304..18377
                     /gene="trmA"
                     /locus_tag="SFZ78_000349"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8211254.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQGRKIFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRAE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(18364..18780)
                     /locus_tag="SFZ78_000350"
     CDS             complement(18364..18780)
                     /locus_tag="SFZ78_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG8211255.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            18899..19312
                     /locus_tag="SFZ78_000351"
     CDS             18899..19312
                     /locus_tag="SFZ78_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8211256.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKEECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            19312..20523
                     /locus_tag="SFZ78_000352"
     CDS             19312..20523
                     /locus_tag="SFZ78_000352"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG8211257.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(20520..21245)
                     /gene="truA"
                     /locus_tag="SFZ78_000353"
     CDS             complement(20520..21245)
                     /gene="truA"
                     /locus_tag="SFZ78_000353"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG8211258.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(21242..22267)
                     /locus_tag="SFZ78_000354"
     CDS             complement(21242..22267)
                     /locus_tag="SFZ78_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8211259.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(22267..>22774)
                     /locus_tag="SFZ78_000355"
     CDS             complement(22267..>22774)
                     /locus_tag="SFZ78_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG8211260.1"
                     /translation="QNFYDFLFLSLFLFNLFLLSLIDIKLKAVPQILLWSAFLFAFFY
                     AFRESEILHFLIFKEFSGGFLLNAFSFGGFVFLLKSLVFFLMNFQKKDEILENLGDAD
                     IIIMSCIGGILGFEYGFLVLFIASILTLPFFIFFRIKAIKEQELAMIPFLNIAFVAVL
                     FYKNLGLF"
BASE COUNT         8518 a         3455 c         3436 g         7365 t
ORIGIN      
        1 attgaattta gaaaaaccat ctatgaaaat gcccatgagc ttaaaagaaa tatcaataaa
       61 gcaggacttt taagtgcaaa tttctttgta ggtgatatca taagaagtaa atttgatact
      121 agaaatatga aaaatttaga tcttgaaatg ggtatggata aaaaagtatg agcaaaatca
      181 aaagatcgat taaaaaagct gtagctctag gctatcaaaa agaaaaaaac tctgcaccaa
      241 aagtgcttgc aagtggcaaa ggcgaaagtg ctgctaaaat tatttcttta gccaaggaac
      301 acggagttcc tattaaagaa gatgaagatt taatagaaat tttaagcaag cttgacttag
      361 gtgatgaaat tccacctaat atgtataaag ctgtagctga agtttttgcc tttatctatc
      421 aaatggcaaa taaaactcct aaaaactaat ccgctatttt ttctccaaat ttaataccct
      481 gccctacttt taaattaaaa gttaaaagtc ctttttgaga gattaaaact atagtagaac
      541 ctagctcaaa atttcctagt tcttcgcctt ttttgaaatt taaattttca tattttttag
      601 taaaattatg agaaatttta gcattggttt gtatgcttgc atcaaaatta aaacgcattt
      661 ttcctacatt ttgcgctcct acaaaaacaa gccaaaaaat acctttttca ttttgacatt
      721 tcaagctcac tctttcattt tttacatata aattactaat gcgttctaaa tgtttttcat
      781 ttacgctata aagcactcca cttgtgtaag ttgcacttaa aatttgcata tcacaagggc
      841 tgtgataacg atgataatct tttggagaaa gataaatatt gacataatca agcccatttt
      901 taagctcatc tttttcaaag ctatctttta aaagctcctc aatgctataa gtatgtcctt
      961 ttatagaaaa agcaaaatgt tcttcatttg ccaaaaaagt acttccacac tctaaaattt
     1021 taccatcact tggactgata aaaccttctt caagctttct tggaatttgc aaagttcttg
     1081 taaaaagagc atttaaactc tcgtattcac aagggctttt aaattcactc atatcgatat
     1141 taaaatactt aacataattt tcattaataa ctttttgtat cattttagga aatttaatcc
     1201 ccgctacaaa accaaaaagt ctcgaacttt cttttgaaaa actcattttt ttccttttaa
     1261 atttaaaatc actatttcac tcggagcaaa aactctaaga cttggccccc aaaatcctgc
     1321 tccactactc acataaagct tagttttttc tcctaaatca taaagcccat gaacaaaacc
     1381 ttgctgaagt ttaactaaaa acataaaagg gaaaatttgc cctccatgtg tatgcccact
     1441 taaaacaaga tcaaaatcac ttaaatcata aagcaaagct gttttaggtt gatgtgtgag
     1501 taaaatacta gctttacttg tatttaaatc cacttttatt cttgctaaat caggagcata
     1561 taaaccccta tcaagtccgg ctaaatctcc aagtccagca atatttataa aacccaaatc
     1621 taaattttga ttgactaaaa ttttcatatt agtatgtttt ctaagcaaat ccaaaacttc
     1681 attgatacca tgataatact catgatttcc caaagcataa aaagttccgt aagtggagtt
     1741 aaaatcatta agttttgaga tgtaattttt taaatcttta ggattggtat caatcagatc
     1801 ccctactatt acaaccatat caggactttg caaattcact ttagtgatga gcttgtctaa
     1861 aaaattttca tgcaaatttt tacccaaatg tatatcagta agcatgacaa tttttaaatc
     1921 ttttttaaga tttggtattt caacatcaac actctttact tcaggtgttt ttagagcatt
     1981 atttatactt acataaatta aaaacacact taaaactata agagaaagtt caaaaatcaa
     2041 acgcaaaata agattatatg ttttatctct tttacccata agagctaaaa tcaatttaac
     2101 aaaatcccat gctaaagtca taaaaaacaa acaataagtc ggcgcataaa acatggctaa
     2161 aatttcatac caagtatcac ttaaatattc atctctacga aatattaaaa acacagcttg
     2221 agctaaaaaa agcacaataa aaataaagga aaaaatttta taaaaatact taaaaagagt
     2281 aattttcttg attaatcttt tataaatata aacatttgct aagccaaaaa ttaataacac
     2341 aatgaaagaa aaaattaaaa atatcataaa agtattataa ccaagtaaaa ttaaatatcc
     2401 gtataaattt ttctgttata ataagctttt aaataatttt aaaggctata agatgtaccg
     2461 ttttgcacct tctcccacag gtgatatgca cataggaaat ttacgcgcag caatttttaa
     2521 ttatatctgt gcaagacaaa aaaatatgga ttttatctta cgtattgaag atactgataa
     2581 ggctagaaat atagcaggaa aagaagaaga aatcaaagaa attttaaatc tttttagtat
     2641 ttcatggcag cattactata tacaaagtga aaatttaaaa ttccatcgcc aaatggcttt
     2701 aaaacttgta agcgaaaaaa aagcttttac ttgtttttgc agcgaagaag aacttgaagc
     2761 aaaaaaagag ctggctaaaa aacaaggtaa agcttatcgc tacgatggca cttgtgaaaa
     2821 actagccgat attgatgttt tagaatgtga aaaacccttt gttatccgtc ttaaaaaacc
     2881 tactcatact atgaaattta ctgattttat caaaggcgag cttagttttg agcctgaaaa
     2941 catagactct tttgtgatta tgagaacgga taaaactcca acttataatt ttgcttgtgc
     3001 ggttgatgat atgcttgaaa atgtcacttg tattatacgc ggagaagatc atgtttcaaa
     3061 cactccaaaa caagaacata tccgcgcaag cttaggttat aataaagcca tgacttatgc
     3121 acacttgcct atcattttaa acgaagaagg tgttaaaatg agtaaaagag aagcacattc
     3181 ttctgtaaaa tggctacttg aaagtggaat tttacctagc gcaattgcaa attatcttgt
     3241 catactaggc aataaaactc cttgtgaaat ttttacctta gaagaggcta taaaatggtt
     3301 tgatatttct aaagtttcaa aagctcccgc aagatttgat cttaaaaaac ttttgcaaat
     3361 taatcgcgaa catatcaaaa tgataaaaga tgatgagctt aataaaattt tagatttaaa
     3421 caaagatctt gcaccacttg ctaaatttta cactcaagaa gcaagtacta taaaagaact
     3481 taaagaaaaa atgcaagcta tttttaacgc aaaaaatttt ggcgagtttg aaacagaatg
     3541 taaaatttta aaagaactct taaaagatat tgaacttttt gaaaattatg aagattttaa
     3601 aaatgaactt ttaaacaaaa gcaacttaaa aggtaaaaaa tttttcatgc ctttaaggat
     3661 aattttaaca ggaaatatcc acggacctga gcttagcgat ctttatcctt atattaaaaa
     3721 ttttattcac gaattagcaa ggatttaact atggttatag actcttttat tatttctatt
     3781 tttcaagtac tacaaattgt cattaacatt tatacttgga ttattatcat cacagcactt
     3841 ctaagctggg taaaccctga tccttataat cctatagtgc aaattttata taaactaagc
     3901 taccctgctt acgccttagt tagaaaaatt ccaacacgca ttggtaatat tgatcttgcg
     3961 cctttgatta tagtcttagc attgcagttt cttggcattt ttcttgggaa tatcttaagg
     4021 agtatattgt gataaaaaaa atactcgttt ttttatttat tttttcaagt ttaaatgcta
     4081 cacaatatag tatagaaaaa ctcaaaaagg aagaaaattc acttgctaag gattattata
     4141 tttataggct tttagaaaaa aataaaatca gtaaaaaaga tgcacaggat ttaaattctc
     4201 atatttttcg ctatatagga aaaattaaat ctgaacttga aaaaatcatc cctttaaagc
     4261 cttatatcaa cccaaaatat gctaaatgct atacctatac agcaaatact atcttagatg
     4321 caaatttaac ttgtcaaagt gtgcgcttaa attcattagt ttttatagcg agtctaaatt
     4381 ccaaagaccg aactacttta gttcaaacct ttaaaaatca aagacctgat ttgacaaatt
     4441 tattgctagc ttttaatact tctgatccta tgagctatat agtacaaaaa gaagatatta
     4501 atggtttttt taaactttat aattattcta aaaaatacga cttagattta aatacaagtt
     4561 tagtcaataa actaccaaac cacattggtt ttaaagattt tgcacaaaat attattatta
     4621 aaaaagaaaa tccaaaattt agatattcta tgctagaaat aaatcctgaa aatgtaagtg
     4681 aagattctgc tttctattta ggagtcaatg ccttaactta tgataaaaca gagcttgctt
     4741 atgacttttt taaaaaggcg gcacaaagtt ttaaatcgca aagtaataaa gacaatgcta
     4801 tattttggat gtggttgatt aaaaacaatg aagaagattt aaaaacttta tcgcaaagtt
     4861 cttctttaaa tatttatagt ctttacgcaa aagaacttac caacacacct tttccaaaga
     4921 tagaaagcct taatccaagc aagaaaaaaa ataattttaa tatgcaagat ccttttgctt
     4981 ggcaaaaaat aaacaaacaa attcgcgatg ctaacgcaag tcaactagat gtcttggcaa
     5041 aagaatttga cacacaagaa accttgccta tttatgctta catattagaa cgcaaaaata
     5101 attttaaaaa acattatttt ataatgcctt attatgacaa tataaaagac tataacaaaa
     5161 caagacaagc tttaattttg gctattgcca gacaagaaag tcgttttatt ccaactgcta
     5221 tttcagtttc ttatgcttta ggcatgatgc aatttatgcc atttttggcc aatcacatag
     5281 gggaaaaaga attaaaaatt ccaaatttcg atcaagattt tatgtttaaa cctgaaatag
     5341 catattactt tggaaactat catctaaatt accttgaatc acgtttaaaa tctccacttt
     5401 ttgtcgctta tgcttataat ggcggtatag gatttactaa ccgtatgctt gcaagaaatg
     5461 atatgtttaa gacaggcaaa tttgaacctt tcttgtctat ggaactagtt ccttatcaag
     5521 aaagccgaat ttacggaaaa aaagttctag ctaattatat tgtgtatcga catcttctga
     5581 acgatagtat aaagatttcg gatatttttg aaaatttaat tcaaaacaag gcaaatgatc
     5641 taagcaaatc ttagctacaa gcctaatctc ttccttgaca ctaggaagag atgctttaaa
     5701 ataatcagta tagttgtttt gtattatata ttttaaatac tcatcatcca atttttcaat
     5761 attggctttt ttattattga taaaaacttc taaattttga atttttaatg tatttggagt
     5821 aaaagataaa gctaatacat catctttact tgtcttgtct agaattgggt ttaaataaga
     5881 catagttata atggcattaa tcttatcttg tgtgattttg tatttttgag taaacattaa
     5941 agtttgagat tttaaatttg tatccacaat cgcctgatct tttaaagaac aagctccaag
     6001 caaaaaagca cctaaaatta cactataaat tttcattctt tttccatatt ttttagtatt
     6061 attgtagcct tttaacccta ttttttggtt taaaaagata taattttgca aaaaaattaa
     6121 gagtatattt tatgaaacaa cttattatag cttttagcgg gccttcaaat tcaggaaaaa
     6181 ctacactcat aaccaaaata gctgataatt ttttgcaaca aaatttaaaa gttttaatca
     6241 ttaaacatga tcctgccgat aaagctcaat ttgattttaa cggtaaagat agttttaaat
     6301 tttttcaaag tggagctgaa gtcatggttt taagccctac aagaacaact tttttttctc
     6361 atgaaaatag agatatttta aaagctttaa aattaagccc tgattttgac atttgtttgg
     6421 ttgaaggatt aaaaactctt gatttaccac gcattagcgt attttgcaaa gaaattgatg
     6481 aaagttattt tattttttca aacgccattg caagctatga aaaaatttct cacccttatc
     6541 ttacttggct tgatttaaac gatatacaag ctatttgcca atacatactt aaaaatgcta
     6601 aaaatttaca aggagaatta taaaatgcaa gaagtgattt cttatataca aaaagcggtt
     6661 ttagaaattt ctaacgcttt aaaatttccc gatacaagct acagtcaaaa tcaaaatttt
     6721 acaggcgata cccaactcaa atttgatgtt ttaagcgatg aaatcatcac aaaaactcta
     6781 agtcaatgtt caagtattaa agccatcata agtgaagaaa aagacgaaat tttaacgctt
     6841 aacgagaggg caaattttat cgtagcttat gatcctttag atggttctag cttaatggat
     6901 gttaattttg ccataggttc tatttttgct atctatgaag aaaaagcaag tgctaaaaat
     6961 ttaagagctg cgctttatag tatgtatgga gcgcgattag aacttgtgat ttgcaaagat
     7021 cagccaaaac tttatcgctt aaatgcaaat aatgaattta tttttataaa agatcttaaa
     7081 atgaatgaaa aaggcaagat taatgctaca ggcggaacgc aaaaattttg ggaagaaaaa
     7141 cacgctaaat ttatcaaaag tctttttgat gaaggctatc gcttaagata ttctggagcc
     7201 atggtaagcg atatcaatca aattttatta aaagggggtg gcatttttag ctatcctgca
     7261 acacaagatg cgcctaatgg caaacttcgt gccttttttg aagtctttcc tctagccttt
     7321 atcatagaaa aagcaggcgg aaaaactaca aatggaaaaa accgctcttt acttgaactt
     7381 gaatttgata aaatccatgc gacaactcct tgtttttttg gctcagaata tgaaatttca
     7441 aaacttttaa aggcttacaa tgaatgaagt tagagatgaa tttgagcaag atatggataa
     7501 aaaaaaagaa attttacttt catgtcaaaa ctcaaaaaac ctaaactctt gttataattg
     7561 cgatgaaatt tttaactgcc aaactagaaa aaattatgtt gatgcagtct ataacagtat
     7621 gtctaagggt aaaaccgaag gcggatttga cttttaaagg aaaaaaatgc gttatattac
     7681 aacaccaatt tattatgtaa atgatgtacc tcatttaggt catgcttata ctaccatcat
     7741 agccgatact ttagcaagat tttatcgttt gcaaggacat gaaacaagat ttctaacagg
     7801 aacagatgag catggacaaa aaatcgaaga agctgccaaa ctaagaaatt ccactcctca
     7861 agaatacgct gataaaatca gttttgaatt taaaaaatta tgggatgaat ttgaaatcac
     7921 ctatgatatt tacgcaagaa caactgatac aaggcatatt gaatttgtta aagctatgtt
     7981 tttaaaaatg tggcaaaaag gtgatattta taaagatgaa tacgaaggac actattgtat
     8041 ttcttgtgaa agctttttta ctcaaagtca gcttattaac gattgttctt gcccagattg
     8101 tggcaaacaa actagaattt taaaagaaga aagctatttt ttcaaacttt caaaatatca
     8161 agataaaatt ttacaatggt atgaagaaaa agatcccatc ttgccaaaaa acaaaaaaaa
     8221 cgaacttata aattttgtcc aaaacggcct taaagatctt tccattacaa gaacaagttt
     8281 tgattggggg attaaactgc ctcaagaaat taatgatgat aaacatatta tttatgtatg
     8341 gcttgatgca ctttttatct atgtaagctc acttgacttt caaaacaagg gagaaaatgc
     8401 taaattttgg cctgcgcatg tgcatttagt aggaaaagat atcttgcgtt ttcatgccat
     8461 ttattggcca gcttttttaa tgagcgtgga tttgcctttg ccaaaattta taggtgcaca
     8521 tggctggtgg actaaagaag gtgaaaaaat gagcaaatct aaaggcaatg ttgtaaaacc
     8581 taaagaagtg gttgatatct atggaagcga agcttttaga tattttttac ttagagaagt
     8641 gccttttggt aacgatgggg attttagcga aaatatgctg ataaatcgta tcaatgcaga
     8701 gcttagcaat gaatttggaa atttacttaa tcgcattata ggtatgagta caaaatattc
     8761 tcaaggaaat atttcaaaag aaggtgtttt aaaatttcac aatgttgaat taaatcaagc
     8821 aaaagaacac ttaaatttag cggtagaatt tttagaaaac ttacagtgta atcgttattt
     8881 agaagaactt tttaaagcct taagtgtagc aaatttagct attagtaaat acgaaccttg
     8941 gaatttaatc aaagaaaaca aacacgaaca agctaacgct ttagttgcac tttgtgcaaa
     9001 tattttagcc aaaacaagcc ttttattaag ccctactcta ccaaagtctt gtcaaaaggt
     9061 ggccttagct ttaaattttg aaatttcatc tacaaattat gcaaaaatga tacttgataa
     9121 taaactttta gattttaaag caaatccttg cgaagcttta tttccaaaag tagaaaaagc
     9181 tcttttaaaa caagaaatta aagaagaacc taaaaaagaa gaaagtccta aaataaaaat
     9241 cgatgatttt gcaaaaattg aaatcaaagt cgctaaagtg cttgattgtc aaaatataga
     9301 agggagtgaa aaacttttga aatttcaact cgaacttgac gataaagaaa tccgtcaagt
     9361 actctcaggc atagcaaaat actataaagc cagtgattta atcggtaaac aagtttgcat
     9421 tataagcaat cttaaaaaag ctaaaatttt tggacatgaa agcgatggta tgatactttc
     9481 tgcaaaaagc ggagataaac ttgttttaat cacccctgaa caacttgtac aaaacggttc
     9541 tttagtgggt taaaatatgc aaattagcaa tttaggcgaa cttttaaacg cgacactcat
     9601 tcatgaaggt agcgttttaa gcgtggaagg ttttgccata aatttaaatg aacttaaagc
     9661 aggctttgcc ttctttaata acgataaaaa agaaattacc caagctgtaa aaaaaggcgc
     9721 ttatgctata attacagaaa atgacattac tattgaagat aaagacattt tttactttag
     9781 agtagaaaat ctagaacaaa ctcttgtaag atttttacgc tttttttgcg aagataaaga
     9841 atgtgaattt ttgcttttta aatcttacga actaagtctt tgtaaggctt tttattttaa
     9901 cattttaaaa ggaaatattt ttgctgattt tgaaaaacta atcaaagcaa aaaagggtga
     9961 aattttttgc tactgtgaag aaaattactt aaataaactt tgtgcctatt ctcatagtct
    10021 aaaagatgct aattttacct tattatcgcg atctagcttc ttttttacaa ctttgatttg
    10081 tgaaaattta tattttaaaa atcttaattt gccttttttt tacgcaaata gttttgcaaa
    10141 aattatttct tttttaaaag aaaaaaatca aaaaataata tttgacttta ataagattga
    10201 tgattttaaa atttatttta ttgatgataa atttgaaatc actccttttg gttcaagctc
    10261 tcaagcgttt attgtaagca acaaccaaaa tacctttgaa ttctggaaag aaaaatttaa
    10321 aaacataaaa gactttaaaa ttgcttctaa aaattcttta ttttgcgatt tttcctataa
    10381 tcagctttca gatttaagaa aattaaaaaa ttttaaatat tgtttaattc ttgaaaatta
    10441 tgatattttt gaacaagaat ttgaaaacaa agaaaatcaa accccaagct tattttaaat
    10501 tcactccttc attttcaagc aaaaatcttt ttatttcaag ccctccatta tatcctccta
    10561 tgccattgtt tgcaataact ctatgacaag gtataaaaat aggaatttga tttttagaat
    10621 ttgcatttcc aacagctcta aaagcttttg gatgattaat tttttctgct atatctttat
    10681 aagtagctat tttgccataa ggaatttcca ttaaagcctt ataaaccttt gattcaaaat
    10741 ccgtaccttg tatcaaaaca ggaatgctaa attttctaag cttatgagta aaatataaat
    10801 caagttcata ttttgctaag tcaagtaaac tacaattttt ttctgatctt ttattatcac
    10861 aaaaatcgac tctagttaaa aattttccat cactatgtaa agataggtaa cataaaggca
    10921 ttttataata aactttaaac attttttatc cttcaaagag ctacaattat aataaaaaat
    10981 atttaaggag tagaaaatgt cttttataca agaatacaat aaacttgttg aagaaagagc
    11041 cgctttgggt ataccacccc ttcctttaaa tgcaaatcaa actagagaac tttgtaaatt
    11101 acttgaaaat gaaaataatg aagagcttgc aaatctttta gaaaatagag taaatcctgg
    11161 tgttgatgat gcagctttag taaaatgtga atttttagat tccatactta aaggcaaaat
    11221 cagtgctcca aatatagaca aaaaaagagc cttaagaatg cttggaacta tgctaggcgg
    11281 atataatgtt aaagttttaa tcgatgcctt aaaagatgaa aacatagcca aagatgctgc
    11341 agaagtgttg aaaaatatta tttttgtaca tgataatttc cataccatag ctgaacttag
    11401 caaaaacaat ccacacgcta aggaagtttt acaaagctgg gcaaatgcgg actggtttaa
    11461 taaaaaagaa aaactaccac aagtgattaa atgtatagtt tttaaagtag caggggaaac
    11521 aaataccgat gatctaagcc ctgcaggaga tgcttttaca agaagcgata ttcctttaca
    11581 tgcaaatgcc atgctaaagg taagacaaac aggatcctta gaaaaaatca aagagcttaa
    11641 aaaaagcggt cgcgaagtgg tttatgtagg tgatgttgta ggaacaggtt caagtagaaa
    11701 atcggcaata aattccatac aatggcactt aggaaaagaa atagaaggtg tgccaaacaa
    11761 gcacagcggt ggtatagtaa tgggttcaac catagcaccg attttcttta acactgctca
    11821 agatagcggg gctttaccta tcatctgtga tgtaacaaac ttagaaatgg gcgatgagtt
    11881 tgaaattcat ccttatgatg gaaaaatcat aaaaaatggc tctgcaatcg cagaatttac
    11941 actcagtcca aacactctct tagatgaagt tagagcagga ggaagaatcc cacttatcat
    12001 aggtcgtggg ctttgtacta aggctagaga atttttagga atggaaagcg aaaatatctt
    12061 taccaaacct gaacaaccta aatcttcaag cggtggttat accttggctc aaaaaatgct
    12121 aggtcgtgcc tgtggagttg aaggtgtgcg tccaggtatg tatatagaac ctataacttt
    12181 aaccgtaggc tctcaagata ccacaggtcc tatgactaga gatgaaatta aagaacttgc
    12241 aagcctaggt tttaatgcag actttgttat gcaaagcttt tgccatacag ctgcgtatcc
    12301 aaaagtaagc gattcaaatt tacataaaac cttgcccaat ttcatgacaa gtcgtggtgg
    12361 ggtaagttta aaaccaggtg atggagttat ccactcttgg cttaatcgtt ttgtattgcc
    12421 agataccgta ggaacgggtg gggattctca cacacgcttt cctataggaa tttctttccc
    12481 tgcaggaagc ggacttgtag cttttgctgc agttactggt tctatgcctt taaatgtccc
    12541 tgaaagtgtt ttagtacgtt ttagtggaga attgcaagcc ggagttacct taagagattt
    12601 ggttaatgct ataccttatt atgcaatcaa acaaggacaa cttaccgttg aaaagaaaaa
    12661 taaaaagaac atttttgcag gaaaaatttt agaaatagaa ggcttgccaa acttaaaagt
    12721 agaacaagct tttgaactca gtgatgcaag tgctgaaaga tctgcagctg cttgtagtgt
    12781 agatttaagc atagaaagtg taagcgaata tatcaaatca aatatttcac ttatagaagc
    12841 aatgatagaa gcaggatatg aagataaagc cactcttgct agaagagcgg ataaaatgag
    12901 agaatggctt aaaaacccta ctcttttaag agcagacaaa gatgcaaaat atgcgtacat
    12961 tatcgatatt aatcttaaca atatcaagga gccaattcta gcttgtccaa atgaccctga
    13021 tgatgtggca accttaagcg aaattttagc cgatgacaag cgtccaaaaa atatagatga
    13081 agtttttgta ggttcttgta tgacaaacat aggacattat agagctttgg gagaaatttt
    13141 aaaagataaa ggcatactta aaaccagact ttgggtagtg cctccaacaa aaatggataa
    13201 agcacaactc accaaagaag ggtattatag tatctttggc tctgctggcg caaggataga
    13261 agttccaggt tgttcgctat gtatgggaaa tcaagcaaga gtaaatgatg gagctgtagt
    13321 tttctcaact tctacaagaa attttgacaa ccgtatggga atgggtgcta aagtatatct
    13381 aggaagtgct gaacttgcag cagtttgtgc gattttgggt aaaattccaa gcaaggaaga
    13441 atacttacaa attgtcagcg aaaaactaag taatgagcat aaggcaaata tctatagata
    13501 tttaaatttt aatgagattg aaaatttcaa acttgaaaat taattcaaat ttaatactaa
    13561 ataacaaaat taaaattttc aaaggaaaaa tattgaagtt attattcact tccttttgtt
    13621 gttttgcaag tttaatggct agcgatgcca ttaactgcga caacattaaa aataataaaa
    13681 cattgctaaa tgaaagttca aatttagatt atttaaatat agcttcaagc tgtaaagaat
    13741 ctttaaaaaa tcaagatttt acaaaaaaac tctatgcaat ttccaatgaa attcgcggaa
    13801 gcaatagctc ttgtaatggt gtggcttatt tgccaaaatt acaacaattt gattttttat
    13861 tattaaaaat agctatcgat cccatcgctt atcaaaaaac tttagataca cccgaaaatt
    13921 tagaaaaaaa atatgatatt ttaaaatctt attttagata ttgggcatat caaagtatag
    13981 gaaattttag actttacaaa gctttttgga aagaatacaa taacgctata gaacctttag
    14041 aaaagtattt tgaaagtaat tttaattttg ataaaggtag taatatttac tatactagca
    14101 atgccttaaa cgaattttta aattgggctg ttggtgaaac aaaaatttac aaagacatta
    14161 gtcctttagc aaaaatcatg tcaaataaaa attattcagt atcttatata caagatttta
    14221 ttttttcaaa taatccaagc caagatgacc ttactatagc cttgcaagca gcgcttctaa
    14281 atcaaagaga aaaagaaatt ttagaacttt tgattcgttt tggcgctagg attgacgaag
    14341 gttatgaaag tgctattttt tatgcattgg aaagttatga aaatacaaac tttttaatcc
    14401 aaaatggagc aaatgttaat caagccaatg cctttggtaa aaccccactt ttttatgcca
    14461 tagagtttaa tcgtcttgat atcataaaac tacttcttga taatggagca aatgttaatc
    14521 aaaaatatat taataacaat gaaaaattag cattaagtgc gaacataggt tcaaatacgc
    14581 cttattttat tacattttgt gctctagagc acacttcaaa aaatgtttta atgcatgctg
    14641 cagcctatgg aaatgttgaa attttaaaac ttcttatttc aaaaggagca aattttaatg
    14701 ctgttgatga tcttggtttt aatgcactcg actttgcgct atcagcaggt aaaaaagaaa
    14761 atgctgatta tctaaaaagc ttgggtttaa aagcaaacga aaatctattt tacggaggta
    14821 gtttagaatg aaaaccgcat ttattacagg agctagttca ggttttggta gagcttgcgt
    14881 tgaagctttt atacaagaag gctacaaagt aatcgccctt gctagacgca aagagcgtct
    14941 agaagagcta aaaaatgctt acaaagataa gatttacacc ctttgcatag atgtaagaaa
    15001 tcaaaaagaa atctttgaag ctattgaaaa tttacctaaa gaatttcaag aaattgatgt
    15061 gctttttaat aatgcaggtt tagctttagg ggtagatgaa tttgataaat taaaccttga
    15121 agatattaac actatggtag atacaaacat caaaggattt ttatatgttg caaaagctgt
    15181 tattcctata cttcgcaaac aaaaaaatgc ttatattttt aacttaggtt cggttgcggg
    15241 acgcaatcct tattttggag gcaatgtgta ttgtggaacc aaagccttta taggacaatt
    15301 ttcattggcc ttaagaaatg atcttagagg aagcaatatc aaagtaacaa acattgctcc
    15361 aggactttgc aaaactgaat ttagtgaagt gcgttttaaa ggagatatcc aaaaagctga
    15421 tgcagtatat gaaaatacgc aatttatcag tgctaatgat attgccaaag tggtaatgtc
    15481 tatcattaac ctaccaagcc atattaatgt taatgaaatc gagcttatgc cggtaacaca
    15541 aacttggaat ggattttata tagaaagaga tgaatgaata aatttttagt ttcattgttt
    15601 ttacctttag ttgcatttgc aaactcctca gaagcagctg caaatgctaa tttatttgga
    15661 gcttttacgc ttataccacc tttagttgct attgctttag cctttatcac aaaagatgtt
    15721 attttatcgc tctttactgg agttttaagt ggaacttttc tacttagcct ttctgcaaat
    15781 atttttaaag cacaacattt aacttttgta aattattaca atactacagt agaatctttt
    15841 tcaaaaatta tttcctatat cttaggttca acttcagatc cagtaaatgc aggaatcatt
    15901 ttacaaattc tttgtatagg tggtcttgtg gcacttatca caaaaatggg aggtgcaaaa
    15961 gctgtagcat taaaatttgc caaaagagcc aaatcagctg tatcagctca agttaacact
    16021 tggtttttag ggcttttaat attttttgat gactatgcta atttactaat cgtaggtcca
    16081 attatgcgtc ctttggcaga taaatttaaa atttctcgtg aaaaatttgc ctttattatc
    16141 gactctaccg cagctcctgt ggcaggaata gctgtaattt ctacttggat aggcttagaa
    16201 gtttctttaa ttaaaaccgc ttatgaacac ataggcatta gcaatattag tgcttttgga
    16261 atttttgttg aaaccatacc ttatcgtttt tataatatct tcatgctttt ttttgtagtc
    16321 atgactgcaa tcatggggcg tgagtttggt tctatgtaca aggctgaagt gcgtgcaaga
    16381 accacaggac aaattgctcc tctacctaaa tcaggcacac tagatactac tgaattagaa
    16441 gatcagtttt tagcaccaaa agaaggtatt aaaattcgtg cttttgatgc tattgttcct
    16501 atttttactt taatcatttt agctatatta ggattttatt ttaatggact tagcacttta
    16561 gaaggcgaag aacttgcaaa agcaagtgtc aatcctttgt cttttgaaac ttttagggct
    16621 gcttttggaa atgctgattc ttctgtggtg ttattccaag ctgctttgtt tgctgctatt
    16681 gtagcgattt ttatcggggt gcgtcgtaaa attttcaatc ttaaagaagc ggtagaaact
    16741 tggatatatg gctggaaaac catgattttt accatagtat tgcttttatt tgcttggtcg
    16801 ctttcaagta tagtaaaaga tctaggaact tctttattta tcactagttt gcttgcagat
    16861 aaattgcctg agtttatttt gcctgctact atttttgctt ttgcttcagc catttctttt
    16921 gccataggaa caagctatgg aactatgggg attttaatgc ctttggctgt gcctttagct
    16981 catgaaatcg ccaaaatcaa tggcatggat gcaaacgcta tgcatcatta tatggttatt
    17041 aatataagct gcgttttaac aggtgcgatt tttggaaacc attgttcacc aatttcagac
    17101 aatgtaatcc tttcatctat gagtgcaaaa tgcgatcata tggagcatgt aagaacacag
    17161 attccttatg ctttatttat ctgtggcatt tctttaatcg ctggatatat tcctgtatct
    17221 ttaggactta gcgtttggtt tgtcttgcct ttaaatttca tacttattgc acttttacta
    17281 agacttatcg gaaagaaagt tccatgagtc ttgaaaattt tggaaatttt ctcactttag
    17341 atgaaaaaca ttctttcata aaaaaatatt ttaaagaatt ttatacaaag gattttaaac
    17401 tttttgcttc aaaagataag cattatcgta caagagctga actttcattt tatcatgaaa
    17461 acgatacgct tttttatgcg atgtttgatc caaaaaacaa aaaaaagtac attatagaat
    17521 atttagattt tgccgatgaa aaaatttgtg cttttatgcc aaaacttcta gaatacttgc
    17581 gtcaagataa taaattaaaa gaaaaacttt ttggtgtaga atttttaacc acaaagcaag
    17641 aacttagcgt aactttactc tatcataaaa atatagaaga tataaagtca aatttagaaa
    17701 atttaagcaa taatcttcat atcaacctca tagcaagaag taaaggcaaa aagcttattt
    17761 ttaaaacaga aaatctaaga caaactttaa atattcaagg tagaaaaata ttttatgaat
    17821 ttaacaacga ttgttttatt caacctaaca ctactataaa tgaaaaaatg attacttggg
    17881 tgtgtgaaat tttaaacact caaaaaagaa tggatttgct tgagctttac tgtggatatg
    17941 gaaattttac tttagcttta gcgccattct tttttaaaat tttagccact gaaatttcaa
    18001 aaagcaatat taattttgct ttaaaaaatt gcgagcttaa caatacaaca aatatccact
    18061 ttgcaagact ttcaagcgaa gaattaagtc ttgctatcaa aaaagaaaga gaattttttc
    18121 gtttaaaaga tattcgatta gatgatttta atttctctca tgttttagtt gatccacccc
    18181 gtgcaggact tgataaaagc gtaattgact taataaaaaa atatgaaaat attatttata
    18241 tttcttgcaa tcctatcact ttaaaagaaa atttaaaaga attaagccta acacatagag
    18301 cggaagagtt tgctctgttt gatcaatttg tcaatactcc acatcttgaa tgtggagtat
    18361 ttcttagcaa ggtataaaaa aataattcat taatttagcc agtattacta tcgcgataca
    18421 aagcacaaat acaaaagggt ggataaaaac accgagtgga tttttcttct ttaatataaa
    18481 atgacaaaat aaagaaaaaa caactaaaga taaaattcca aaagccaaaa taatttttac
    18541 agcaaaaagt aaatttaaag gtttaaaatg aaaacccgcc aaagcacctc cgcttaaaaa
    18601 aagcaaaaga accacaaaag gcattatttt aaccccagta gcactaaaaa gacttttgtc
    18661 aaaattagga tttttctttt taactacacc caaaacaaat acatcaacaa acaaataacc
    18721 tataaacaaa atagcacaaa gaagatggat tgttaaagta tatggataaa attcttccat
    18781 ttttccctcc ttattaaact tcggaatttg ctatattata acactttttt cattttttaa
    18841 attcacttta gttaattttt taatcattta agataaaata ccaaaacaaa ggttaacaat
    18901 gaatgaaaaa gaaactatct cttatattat aaatacaagt aaaaatattg ccatatttgc
    18961 tttaagtcca gataagacaa aagcttctta tagggtagca gaatttttac aaagaaaaaa
    19021 ttataaaatt tttcctattt atcctaaaga agagtttatt ttaaatgaaa aagtttatag
    19081 aaatttagat caaatagaag aaaaaatcga tacacttata ctttttagaa aaggcgaagt
    19141 ggcactagaa attcttccta agcttgttga aaaaaatatt aaaaacctat ggcttcaact
    19201 tggtattagt aatgaaacag ccaaagaaga atgtaaaaaa ttagatataa attttataca
    19261 aaatcgttgc attatgctag aatatccgta ttttaaaaca aaggaaaaat agtgttagag
    19321 cttaataaaa tttacaaagc aaaacaacaa atttcagggt ttgtaaacaa aactcctttc
    19381 atatactctt cttttttaag tgatatttgt caaagtgaga tttatcttaa aaatgaaaat
    19441 ttacaaatta caggtgctta taaaattcgt ggagcttata ataaaatagc caatcttagc
    19501 gctgaacaaa aacaacacgg agtcattgcg gcaagtgcag gaaaccatgc tcaaggcgtg
    19561 gccattagtg caaaaaaatt tggcattaaa gcagttattg taatgccaga atccactccg
    19621 ctcttaaaag tttctgctac aaaagcctta ggagcagagg tgatactcaa aggggacaat
    19681 tttgatgaag cttatgtctt tgcaacctct tatgctaaag aaaataatct tagttttatc
    19741 catccttttg aagatgaatt tgtaatggca ggacaaggaa ctttgatgct tgaaatgctt
    19801 gatgaaataa gcgatcttga tatgattatc gcacctgttg gaggtggagg acttataagt
    19861 ggtatcgcaa gtgcagctaa acaaatcaat ccaaacatta aaatcatcgg agttggagcc
    19921 aaaggagctc ctgcaatgta tgaaagtttt catgccaaaa aaatcaaaaa tgcaaaaagc
    19981 gtacgcacta tagccgatgg tattgctgtg cgtgatgcaa atcctataaa ttttaacatt
    20041 attttagaat gcgtagatga ttttatccaa gttgatgatg aagaaatcgc taatgcggta
    20101 ttgtttttac ttgaaaaaca taaaatcata gttgaaggcg caggagctgc gagtgtagcc
    20161 gccctgcttc atcaaaaaat aaatacacaa aatcataaaa aaattggcgt agttttaagc
    20221 ggaggcaata tcgatgcaca aatgctaaat atcatcatag aaaaaggttt atttaaatct
    20281 tacagaaaaa tgcaaattca tgttacttta gtagataaac ctggggcatt attacacctt
    20341 acagacagct taaaaatagc caatgcaaat atagtaaaaa tcgactatga tagattttct
    20401 accaagcttg attatggcga tgcgatgatt tcaattaccc tagaaaccaa aggtaaagaa
    20461 caccaagaag aaataagaaa aattttaacc caaaaggctt ttaatttcta tgaaagtttt
    20521 taataacata tacggcttaa ataaagccca tttggcggtg ctaaaaagtg attgtattgc
    20581 tttttagcct caatctgttc tttgagttct ttttcactca tttttccttc taaaactttt
    20641 aaaacgcttg ctacgcttaa tctaatttgc cctcttaaaa aaccattagc tttaaaatga
    20701 aaaatgctaa aatctttata agcataagct ctagcaataa aaatttctct taaagtcgtt
    20761 ttattatccc ctccactttt gcaaaaaaac tttaaatcct tttttcctac aaaaaaaccc
    20821 aaaagctcat tagctttacc taggtcaaat ttaggataaa aatgtacata agaagccata
    20881 aaaggactat aagaagcgtg agaaaatata tagcggtatt ctctactttt tacatcaaat
    20941 cttacttcaa aatcatcttt tactttttca atttttttga tatggataaa aggatgggaa
    21001 aatttattaa gttgtttttg aagatattct aaatttgtaa aataatctcc acactccaca
    21061 ctagctacag catagcttgc atgtactcct ttatctgtac gagaagccat taaaagaggt
    21121 gaaaaaatac ccaaatgcga taaggcccca cttaaagcat cttgaacacc ttttttatga
    21181 ggctgagtag cagaacctaa aaaagcagag ccatcataag aaaatataat ttttattttc
    21241 atcaatatcg actcaaaatc attttcttaa aacaataagc cgaaacaaat aaacttaaag
    21301 aaaaaattcc aagacaagcc aaaattggag gttgagaaaa agaacttaaa agtccaaaat
    21361 atatagcaat cactccaaac atacctaaat acacatagcc tttttcataa cgataagtaa
    21421 ccaaaccaaa acaaagcgca aaaagcgtac tagcaagtgg aaacaaggct atagttgtat
    21481 aaatcacaaa ttctcttgct ctttgtggat tttcgtttaa atcattccag tattcataaa
    21541 atttctttgt ttgaagattg tctgtattaa actgagtatt tactactaaa gtgtcaaatt
    21601 ctccactaaa aatactttga ccttgctcaa aattatacat tttgccttga tttaagctaa
    21661 aagcaaagct atcatctttt ctttgcacat gcgcttcttt ggctatgata agttgttctt
    21721 tatcatctgc tttatgttta gggcgataca taattatgtt ttcatactta tcactatctt
    21781 gtttttctat aaaaatcatc cagtctaaaa atttttgtcc aaattctcct gttttgtagt
    21841 taaatttcac ttgagtgctt ttatagttta caaagttatc ctgaagttca aatactatag
    21901 gtatcattac caaagccaca acaagcataa aagcactaat caagcttgca attttaagga
    21961 aaaattttgc caaaatcatt ggtgaaaatc ccaaagtaaa aagcactatg ctttcatttt
    22021 ccttagaaag cctaaacaaa gccaaagtta aagaaataaa aaaagatata ggcaaggtaa
    22081 aaattaaaat tctaggcaac ataaacccat aaagctttaa aagatccaaa aaactaatct
    22141 ctatacttga agtaagtttt gcaagttgaa taaaaaacac catagataca atagcaaaaa
    22201 gtacgaaaaa tatagacaaa ttcgtactta aaaattgatt taaaacatat cttaaactaa
    22261 gcttcattag aataatccta agtttttata aaataaaact gccacaaaag cgatatttaa
    22321 aaagggtatc atagcaagtt cttgctcttt tattgcttta attctaaaaa aaataaaaaa
    22381 aggcaaagtc aaaatagaag ctataaataa tactaaaaat ccatactcaa aacctaaaat
    22441 tccacctata caagacataa taataatatc agcatcaccc aaattttcta aaatttcatc
    22501 ttttttttgg aaattcatta gaaaaaaaac caaacttttt aataaaaaaa caaatcctcc
    22561 aaaactaaaa gcatttagta aaaaacctcc actaaactct ttaaaaatca aaaaatgtaa
    22621 aatttcactc tccctaaagg cgtaaaaaaa agcaaataaa aaagcactcc aaagtaaaat
    22681 ttgtggtacg gctttgagtt taatatcaat taaagaaagt aagaaaagat taaataaaaa
    22741 tagagataaa aataaaaaat cataaaaatt ttga
//
LOCUS       DARGEM010000011        22416 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.011, whole genome shotgun sequence.
ACCESSION   DARGEM010000011 DARGEM010000000
VERSION     DARGEM010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.011"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..207)
                     /locus_tag="SFZ78_000356"
     CDS             complement(<1..207)
                     /locus_tag="SFZ78_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211261.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTI"
     gene            complement(191..703)
                     /locus_tag="SFZ78_000357"
     CDS             complement(191..703)
                     /locus_tag="SFZ78_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211262.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            complement(700..3129)
                     /locus_tag="SFZ78_000358"
     CDS             complement(700..3129)
                     /locus_tag="SFZ78_000358"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG8211263.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKVLRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            complement(3139..4110)
                     /gene="secF"
                     /locus_tag="SFZ78_000359"
     CDS             complement(3139..4110)
                     /gene="secF"
                     /locus_tag="SFZ78_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG8211264.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            complement(4110..5690)
                     /gene="secD"
                     /locus_tag="SFZ78_000360"
     CDS             complement(4110..5690)
                     /gene="secD"
                     /locus_tag="SFZ78_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG8211265.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            complement(5683..5955)
                     /gene="yajC"
                     /locus_tag="SFZ78_000361"
     CDS             complement(5683..5955)
                     /gene="yajC"
                     /locus_tag="SFZ78_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG8211266.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            5928..7253
                     /locus_tag="SFZ78_000362"
     CDS             5928..7253
                     /locus_tag="SFZ78_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG8211267.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQNQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            complement(7490..8686)
                     /locus_tag="SFZ78_000363"
     CDS             complement(7490..8686)
                     /locus_tag="SFZ78_000363"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG8211268.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            8826..10049
                     /gene="sstT"
                     /locus_tag="SFZ78_000364"
     CDS             8826..10049
                     /gene="sstT"
                     /locus_tag="SFZ78_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG8211269.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            10059..10946
                     /locus_tag="SFZ78_000365"
     CDS             10059..10946
                     /locus_tag="SFZ78_000365"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG8211270.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGSVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            10950..12671
                     /locus_tag="SFZ78_000366"
     CDS             10950..12671
                     /locus_tag="SFZ78_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG8211271.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNTN
                     EFLQALKDYENLNQALGKIMTYVYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELTPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEVLSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            12665..13102
                     /locus_tag="SFZ78_000367"
     CDS             12665..13102
                     /locus_tag="SFZ78_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211272.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            13099..15174
                     /locus_tag="SFZ78_000368"
     CDS             13099..15174
                     /locus_tag="SFZ78_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8211273.1"
                     /translation="MNLFEELNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            15171..15989
                     /gene="truB"
                     /locus_tag="SFZ78_000369"
     CDS             15171..15989
                     /gene="truB"
                     /locus_tag="SFZ78_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG8211274.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            15983..16210
                     /gene="csrA"
                     /locus_tag="SFZ78_000370"
     CDS             15983..16210
                     /gene="csrA"
                     /locus_tag="SFZ78_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG8211275.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            16207..16974
                     /locus_tag="SFZ78_000371"
     CDS             16207..16974
                     /locus_tag="SFZ78_000371"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG8211276.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            16971..17423
                     /gene="smpB"
                     /locus_tag="SFZ78_000372"
     CDS             16971..17423
                     /gene="smpB"
                     /locus_tag="SFZ78_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG8211277.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            17434..18036
                     /locus_tag="SFZ78_000373"
     CDS             17434..18036
                     /locus_tag="SFZ78_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8211278.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            18036..18326
                     /locus_tag="SFZ78_000374"
     CDS             18036..18326
                     /locus_tag="SFZ78_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG8211279.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            18323..20452
                     /locus_tag="SFZ78_000375"
     CDS             18323..20452
                     /locus_tag="SFZ78_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8211280.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTNDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            20427..21074
                     /locus_tag="SFZ78_000376"
     CDS             20427..21074
                     /locus_tag="SFZ78_000376"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG8211281.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(21096..22385)
                     /gene="cetZ"
                     /locus_tag="SFZ78_000377"
     CDS             complement(21096..22385)
                     /gene="cetZ"
                     /locus_tag="SFZ78_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG8211282.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
BASE COUNT         8125 a         3602 c         3114 g         7575 t
ORIGIN      
        1 tatagtttta gaatttaatt cttgttgata aatcggtaaa agcaaggttt tgtatttatc
       61 aagtttagcc ttatttgaac ttgtaatacc atattttaaa gataattctt caaaaatttc
      121 cgtataattt tcaggagttg gttttagttt tctttctttt aatgcaatta aagtttgctt
      181 tgctatttca ttagtatttg gaatcacgtt tttgcccttt aatagcaatt acggaaataa
      241 actcatcaaa tgcctcgctt gaagctgctc gaatagcctc ataccttgca gaatcactaa
      301 taatactatt tggagaaatt tcaaaattat aacttccact tgtactaaaa gcctgacttg
      361 aaccatcttt aaagacaaca ttaaaatcta aatttaattt agctttataa ctaataacat
      421 agccattttt atcataagct aaaggaataa attctaaatt attcatttta acattgatta
      481 catcatcagc ttcatgtttt aaagcaagtt tacgccctaa ttttgaaatt accatttctt
      541 ttaaagtatc ggcaacatag atactatttt ttggatcttg ttgacttaat tcaacattaa
      601 cataaacctt ctcatcgaaa atattattag cgatttttga tgtaggaaca tatccacaag
      661 cacctaaaaa taaacctata caaaaaatta aaatcttttt catttaatca ctagattaac
      721 tagctttcct tccacataaa tttctttaac tatactctta ccttcaagcc atttagcagt
      781 attttctttt gcaaaagcta aaatttcttc tttactcgca ctacttgaaa tttcaaattc
      841 agcccttttt ttaccattaa tacttacagc taaatttaaa gtatctttta caaaaacctc
      901 ttccttaagt tctaattttt tgaaattttt acatttaaaa agctcctcgc taagctcaaa
      961 acaaacatga ggaataatag gctctaaaat atttaaaata atataaaaag cctcttgctc
     1021 caaagcttca tttttacaaa gcgctaaagc atttaaagct tccatgcaag ctgcaattaa
     1081 agtattaaaa gcaaaacttt gatgataaac ttcaaaagat tttttcaaag cttcatatac
     1141 ctttaatctt gcatattttt cttctttatt taaattttct tgttttaatt ctacaagctc
     1201 acctttttta acattttgcg ccctatcata gagtttacaa ataaatctat aagccccttc
     1261 aaccgcatca tcattccatt caagctcttt agccggaggc gcagcaaaaa gtataaaaag
     1321 tcttgcggta tcagcaccgt atttttctat aatctcatca ggatctacaa cattgccttt
     1381 tgattttgac attttagctc catcttttaa caccataccc tgagttaaaa gtctatcaaa
     1441 aggttcattt tgtgttaaat aacccaagtc tcttaaaact ttttggaaaa atctcgcata
     1501 aagcaaatgc aagattgcat gttcaatacc acctatatat tgatccacac tcatccaata
     1561 ctttacactt ttttcatcta aagctttttc ctgccaagtt ttctcatcac ttgcaaaacg
     1621 tgcaaaatac caagaacttt caaaaaaagt atctaaagta tcactttctt tttgagcctc
     1681 tttgccacat ttgggacaaa tacaattttt ccaagttgga tgtttatcaa gtggattacc
     1741 ctcacctgta atttgcacat cttcaggtag ggtaataggt aaattttcta gtttttgagg
     1801 cactatacca caaatttgac atttaatcat aggaataggc gcaccccaat atctttggcg
     1861 tgaaacaccc caatcacgaa ttttaaaatt tacaaccctt tttcctatat ttttagcttc
     1921 aaactgagaa ataattttta atcttgcctc attacaatca agattatcaa attcttgact
     1981 atggattaac tttcctgatt tttgcgtata aggtaaattt tcttgagttt gaataacttg
     2041 tttgatagca agattatatt ttgttgcaaa ttcaaaatct ctttcatcat gagctggaac
     2101 agccataacc gctccgctac cataatcagc caagacaaaa ttagccaccc ataaaggaat
     2161 tttttctccg cttaaaggat gaatggcata aattcctaaa aaataacctt ctttttcaga
     2221 actttgtctt tctcttgggc tttgattttg aataactttg attttattta atacatcttg
     2281 atttaataaa ttttgtgaaa gcaaattttg aacaatctta tgttctggag ctaaagcgat
     2341 atacgaaact ccataaattg tatctgctct tgtagtaaaa acttctaaag aactttcttt
     2401 ggttttttgc ttgctttctt cgtctaaatt taaagaaaat tccaaacctt cgcttttacc
     2461 aatccaattt tcttgcatag ttaaaacttg attaggccat ttatctttta attcttctaa
     2521 atcttttaaa agttcctcag cataagcagt gatttttaca taataacctg gcattttttt
     2581 ctgcactact tcatgaccac aacgccaaca ttttccgtct tcaacttgct cattagccaa
     2641 aaccgtttga tcttgttcac accaatttac atttgcttct ttagtgtaaa tcaaaccttt
     2701 ttcaaacatc ttaataaaaa attcttgctc aaattttgta taaagtggat ctgaagtagc
     2761 aagcattctt tttttagaaa aagaaaaacc taaagaaaaa agttcttttt tcatataagc
     2821 tatattttca taagtccatg acttaggatg aattttatgt ttaatagctg cattttcagc
     2881 aggcatacca aaactatcaa aacctatagg atgtaaaaca ttaaaaccta tcttgcgata
     2941 atatcttgcc aaagcatcac ctatagtata atttcttaca tgccccatgt gaattcgtcc
     3001 gctaggataa gggaacatcg ataaaatata ttttttaggc aaatttaaat catcttttgg
     3061 ctcaaaatat tcattttcat cccaaatttt ttgccatttt ttttctatta aacttgcttc
     3121 ataagccata aattctcctt acactgttcc tttttcatac attgcacgat tgcgttcttt
     3181 atcttgtttt ctttttgctt tttcaatttc tttattccta aactcaagca cactaaattt
     3241 aaaccataat aatgtcggac ttgcaacaaa gatagagctt aaagttcccg ctataatacc
     3301 tacaattaaa gccaaagaaa atccttgtat catttcccca ccaaagaaat aaagtatcac
     3361 aacggttgct aaagtcaacc ctgaagttaa aaccgttctt gataaagttg ctgaaacact
     3421 ttcattaata ataggtgcaa gttcggtttt tttacttgtt ttaatacctt ctctgattct
     3481 atcaaaaata ataattgtat cattcaaaga gtatccaagc acagttaaaa cagcagccaa
     3541 agtatctaaa ttgacatcaa ttttaaataa agaaattgcc cctaaagtaa tcacaacatc
     3601 atgaatttca ctgattatag ccgcaagagc aaaacgccac tcaaaacgca acgctatata
     3661 aattaaaatt gctatcaaag atacagctat agccataagt cctttatttc taagttcatc
     3721 acctactttt ggacctacca catcagcacg acgcacttca aattttcccg tatcctttaa
     3781 aagagtgctt atatgctcgc ctatatcatt gcttacatta tcattacttc ctaaaaagcg
     3841 tatggttact tcttcattac ttccaaattc agttacagat aaattttgaa aagttccttg
     3901 tttttctaaa atttctcgaa tttgtgttat aggagctgca ttttcatatt taagctgaac
     3961 taaagttcct ccgctaaaat caatgccata ttgcaaaccc ctatcccaaa gtaaataaat
     4021 agaaccaaaa aacaaaataa aagaaagaga aatagcagca aaacgcattc tcataaaatc
     4081 ataaattttc ttttcgctaa aaaactgcat tatcttctcc tatagccaaa ccaaaatctt
     4141 gtattattat ttttttctat gcgttgcata aaataatcaa acattccgtg agttcctaaa
     4201 atagctgtaa tcatagaaac aacgatacca attcccaaag tcacagcaaa acctttaact
     4261 gctcctgttc cataggcata aagtgctacc gaagtaacta aagaagtgat atttgaatct
     4321 ataatcgcac tcatagcatt tttataacct tgttctatac taactcttat atttactcca
     4381 tctcgcaaga gttctcgtat acgctcattg ataatcacat ttgcatctac tgccataccc
     4441 acagttaaaa caagtcctgc catccctggt aaagttaaag ttgctccaaa catagccata
     4501 acggcaacta ctaccaaaac attaactagc attgcaatat ttgcaaaaat tcctgccaca
     4561 ccgtaataca tcatcataaa tactacaata aaaaccgatg caccgattaa ggctatcata
     4621 ctcattttaa tactatcagc acctaaagat ggtcctatgc ttctttgttc aagtaatttt
     4681 acaggcgcaa gcaaagctcc acttcttaaa gctaccgcca catcgcgtgc ttcttcttga
     4741 gtaaaagctc cactgatttg cccactacct ccgcctatgc gttcattgat agatggagca
     4801 gaatatactt tattatcaag tacaatagca agacgctttc caacatttgc tcctgtataa
     4861 tcagcaaatt ttttagaacc ctcggcattt aaagtaaaat taatcacagg ataattactc
     4921 ttatcactaa tccctactct agcatcagta agcatagatc catctaaaat aggtatactt
     4981 tttaaggtat attttaaatt tggatttcta gaatcaggca ctaaaatcag tccataactc
     5041 gcagcctcag catcgctcat tgtagaagct tgacccattt tagaatcatc aacttccata
     5101 agttgcaaat gtgctgcttt tgtgatgcgt tcttttgctc ttagttcatc ttctttggtt
     5161 ttaatccctg caagttcaac caaaatctta tcatcacctt gtttagcaac tgttggctct
     5221 gctaaaccaa attgatcaag cctatttctt atggtttcaa ctgcttgcaa aagtgcaaaa
     5281 ttttctatat tttttacttc ttctgaggta aaagaaattt tatagtgcat attttcactt
     5341 tgtatattaa ttccttttat ttctttaagc aaattttcaa cttttgcaat atctgcatta
     5401 tcaagcaaag taaattctaa aatatcatca tgggtattta agccatcatt taaaatattt
     5461 tctttattaa aagaataact caatgaagat gcaattgatt ttattttaga ttttacagct
     5521 tcttcattat ctacacctaa gagcatataa agcccacctt gcaaatcaag ccctaaatta
     5581 atcttcgcac cacgttctga ctgtaaaaaa gaagggagtg aaaaagccac tccaaaaata
     5641 aataccgcta taaaaataat caagcgataa ttgattttag aattacgcat caattttctt
     5701 tgctataaat tctcttgaaa tttttgcagt aacattgtct tcattaagct taactttgat
     5761 aaaatcctcc tctggtttta cgacttcaca aataagtccg ccattagtga tgattttatc
     5821 tcctttttgc aaagactcaa gcatttgttt atgtgctttt gcttgttttt gttgcggtct
     5881 gatcaccaag aaataaaaaa ttgcaaataa cactacaaga ggtaacaatg aagttaaaat
     5941 tgaattttct gccatatttt tcctttattc caaaaaaatt aaacactaat tctatcattt
     6001 ttaaaataat aaaagtcttt tttattgcaa ttttactttc aaattctatt tatctatcat
     6061 tttttgaaaa tatttttaca caaactatta gcccattttt agctatttgg gggttagttt
     6121 tacttctaaa aagtaaaaat tctaaacaat atttttggat aggttttttt gtagggattc
     6181 tttggttttg gtggattggt ttatcttcaa tttattttaa tctaaactat ttagtaccaa
     6241 ttataccaat tatcattggt tttatttatg gactactttt tagattatgt tatttattaa
     6301 aatttgattt tttaaggctt tgtggaattt tttgcataag ttttatccat cctttaggat
     6361 ttgattggct taattgggga atttttacag tttatggttt ttttgaccca agttatcgtg
     6421 gtattatttg catattttta atagcatatt tcatctatga gggttatata tcaagatatt
     6481 ataaaatagc gattgttctt attttattct ttagtggatt tcaatataat gaaaaacaag
     6541 ctcaaactct taatttaaac tacaaactca tcaatactaa tatctctcaa aatcaaaaat
     6601 ttttacaaga aaatttaaaa tcaaattctg atatcttaat tcaagatata cttcaagcta
     6661 taaatgaaaa aaaagaactt gtaatcttgc ctgaaaccgc ttttgctttt gatttaaaaa
     6721 ataccaaata tgagctcatg cttaaagaat tatcttataa aatcaccatt attacaggag
     6781 catttcatgt tgaaaaagag catacttaca atagcactta tatctttaaa aaaggcaatg
     6841 tctatatttt aaataagcat tttttagttc cctttggtga agaaattcca ttttttaaag
     6901 acttaacaaa aaaatatttt ctcaaaaata ttgaagaatt ttccaaaggt cctatacaaa
     6961 gcaaatataa attagataat caaattatca caaatgcaat ttgttatgaa gctaccaaag
     7021 aacaaaacta tcaaaattca caaattatta tagccctaag caacaatgct tggtttaata
     7081 atagtagcga atacaaactc cagcaactct taatgaaatt ttatgcaagt aaatatgggg
     7141 ttagtgttta tcatgctaca aatggcaaag agaatatagt tatactccct aaaaagcttt
     7201 taagcaaaga ttggaaaaat ttatccaaag aaatatttaa tgataaaaaa taatattaaa
     7261 attttaattt taaagtaatt taagttattt tatattataa ttctgtcaaa caatattttg
     7321 acttagaggg gtttttaccc caaagctaaa ttaatttagc ttccttccta acttttatat
     7381 ttatgaggga tattgaaaaa tatccctcta agtcaaaaat taatataact ttattaattc
     7441 tttataatta tacaagcctt gtttaagctt gtataatatt gttaattttt taaagtagct
     7501 ttttaaactg ttctagagca tcaagttttt cccaaggata gtccttttgt cctacttgcc
     7561 cacgagctgc tacatccgca taaagaaaag tttctttact tggtttatcc agatgaaatt
     7621 tatcacggat ccaatttggc gttaaagaga aattttgcat tacaaaatca cttaaaacat
     7681 cgtcatttac actggtattt gtgcccatac aatccacgct taccgaagta ggttttgcaa
     7741 cacctatagc ataactaagt tgaactatac attttttagc aagccctgct gcaactatgt
     7801 ttttagctaa ccatctacct gcataaagtc cacttctatc aactttagta taatctttgc
     7861 tcgattgcgc accaccacct attggagaat aacctccaaa actatctact ataagttttc
     7921 ttcctgttaa accactatca tgtaaagaag aatgattaac atatttacca gttggattga
     7981 ttaaaattct agtcttatta ggatcaaaaa gttcttttgg taaattacta tctaagataa
     8041 gtttcatcac taaagatctt aaatcttcta ttttcatact ttcaacacaa ggtgcagaaa
     8101 ctactatagt atgaatactt tgcggtttgc aattttcaaa attcgcctta gtgccataat
     8161 ctatagtcac ttgagtttta atatccactc caagttcatg tggatttgct tttgcataag
     8221 cataaactct atcacatagc attcttgcat aactaatagc tgctggcata tattcctcag
     8281 cttcacaact tgcaaaacca aacataatgc cttgatcacc tgctcctgtt tcgccatctt
     8341 cttgatcgac accttggttg atatcagggc tttgttcatt taaaaacacc ataacatcaa
     8401 cctcatcagg atgtaaacac tgctctttgc taaaatggcc tgctccgtca taaccaatgt
     8461 tttttaaaac atctttaact aaattatcgt aatcagcttt actaagtttg tgatttgact
     8521 taacttcgcc tcctatcaca accttatttc ctgcgacaaa aacctcactc gccacccttg
     8581 aatttttgtc atttttcaag agtatatcca ctatcgtatc agcgattata tcagcgcact
     8641 tgtctggatg acctgcactt acgacttctg aagtgaatag atacataaaa agtcctttca
     8701 tttaaaataa accacaattg tatccaaata aacttatcaa agcttgataa attaaaaatt
     8761 ctctaaaatt aagcaaaagt tagttaaaat caacttttga tataaaaaat atttaaaagg
     8821 tttttatgtt ttctaaaatc attcaaagct acgctaaagg caacctcata gttcaaattt
     8881 gcataggtat agcactagga atacttatag gcattagctc taaagaaata tctgaaattg
     8941 caaatttact tggaatactt tttacaagtg ccttaaaagc tatcgctcct atgcttgttt
     9001 ttattttaat tttaacctca atttgcacta aagatttttc tcaaagtggt gctaagatca
     9061 aaaatattat cattttatat atagtaggca ccttttttgc ttcagcttgt gcagttcttg
     9121 ctaatttttt cttccctgta aagcttgttt tagatggagt tcaaactgct acaaactcat
     9181 ctccaaccca catgagtgat attttcaaag atcttttatt taaaattgtc gataatccca
     9241 taaatgctct ttcaagcgga aattatttag gaattttaac ttgggcaata gctggaggta
     9301 tagcattaaa acactgttct aacgaagcaa aacaagtttt tatagatatc aatgaagggg
     9361 ttttaaaaat cgttaaattt gtagtaaaac ttgccccttt tggaattttt ggacttgtgg
     9421 ctaattctgt agcacaaaca ggagcacaag gtttgctaag ttatgtaaaa cttttaattt
     9481 tacttgtagc tactatgctt tttgttactt ttgttatcaa tgccttaata gtcttttttt
     9541 atacaagaaa aaatcctttt cctttaattt ttatctgctt aaggcacagt gcattttttg
     9601 ccttttttac aagaagttca gcggcaaata ttcctgtaaa tatggcactt tgcgctaaac
     9661 ttggcataga taaagaattt tatggcattt ctataccttt aggagctact atcaacatgg
     9721 caggagcagc agttactata gctattttaa gtcttactgc agccaatacc gttggtatag
     9781 aaatcagtct tttacaagcc tttttattaa gcattattgc cacctttgca gcttgtgggg
     9841 ctagcggagt tgcgggcgga tctttactgc ttataccttt ggcttgttct ttatttaata
     9901 tagactatga tattgctatg aaggtagttg ccataggttt tattataggg gttattcaag
     9961 atagtgttga aactgcttta aatagttcta cagatgttct ttttacagca atttgttcta
    10021 aaaatgaatt aaattacaat atcaaataag gtaaaaatat gcgtcatctc atcactacaa
    10081 aggattttaa taaagtcgaa attatggagc tttttaaaga agcaagtgat ttcttagatg
    10141 aaaaacctag gacttttctt gaaggaaaaa gcatcacgac aatttttttt gaaaactcta
    10201 cacgcaccct ttcatctttt gaaagcgctg caagaagatt aggtgctagg gttttacgcc
    10261 ttgatgtttc aagatcaagc tctagcaaag gagaaactct ttatgatact gctgctaatt
    10321 tagatgccat gagtcctaat gctattgttg taagacacgc aaactcagga gttcctttga
    10381 tattagcaaa gcatatgcat tgtcctgttg ttaatggagg agatggaaaa cacgcccatc
    10441 ctacccaagc tttactcgat ttgtttacga tttataatca ttttcaaggt agtgttgaag
    10501 gtaaaaaaat ttgcatcgta ggtgatatta aaaattcccg cgttgcagcg tccaatatag
    10561 aacttttaag tagatttaat cttgatatta ccctagtagc tccaccgcat tttatgccta
    10621 atacccatct taaaaaacat tataaacttg atgaaaatat tatagcaaat tcagatatca
    10681 tcatgagtct tagaacacaa acagaaagac ataataaaac cgtttatgct tcacttaaag
    10741 actatgcaaa tgatttttgc attcaaaaaa gcttagtaaa ggataaaaag cttattttac
    10801 tacatccagg ccctgttaat cgcaatattg acataagcga tgaaatgatg agcgatgaaa
    10861 ggactttagt tttaaaacaa gttaaaaatg gagtggctat tagaatggct gttcttaaaa
    10921 aactcatact agaaaatgaa ggataaaaaa tgttagaatg ggatttaagt gctttatttc
    10981 acgataaaga agcattgcaa aattttacac aagatcaaat ccaacaaagt ttaaatttca
    11041 aaaaaaacta tgaaaataaa ctttatacat taaatactaa tgagtttttg caagctttaa
    11101 aagattatga aaatttaaat caagctcttg gtaaaatcat gacttatgtt tatttgcttt
    11161 ttgctaaaaa cactcaaaat ggttcttttt acgcacaata cgaagaagag tgcaaaaaaa
    11221 tagaagaaaa tttactcttt ttcgagcttg aattttgtga gttaactcct gaaaaaagtc
    11281 aagaatttac aactttttgc aaagattatg atttttatct ttctaattta ttgcaaaaca
    11341 aacgctataa tcttagcaaa aacgaagaac gcattatgct ttatctttcc aatacaggtg
    11401 caaatgcttt tagtagactt tttgatgaaa gtatgagcgc tttaaaaatc ccttttgaag
    11461 gtaaaaaact tagcgaagaa gaagttctaa gcaaaatgta tgatgaagat agaaaaatac
    11521 gcaaaaaagc tgctaaaaaa ttcagtaaag ttttgcaaaa aaatagcaga cttttaagtt
    11581 ttattattaa tatgataaaa acagaaagaa aaaacataag cttattaaga ggttatgaaa
    11641 atgctgaaat ttcaagacat atcagcaatc aaatttcaca aaaaagcgtt gattctttga
    11701 tagcaagtgc gcaaaaacat tttaacttag tatcgcaatt ttacaaaaga aaaaaacaaa
    11761 ttttaggcta tgatgagctt aaagactatg acagatatgc acccatagga aaagaagcaa
    11821 gttttgattt taaaacaagt aaaaatattg ttttagaggc atttcaagct ttttctcctc
    11881 aattttatga tatagcaaaa aatgcttttg atcaaggttg gattgatgtt tatccgcaag
    11941 aaaataaaca agggggtgct ttttcgcatt ctgcaacttc tgatgcacat ccttttgttt
    12001 tattaaacta caccaataaa agacgcgatc tttttacact tgcacatgaa ttaggacaca
    12061 ctatccatca aaaactttct tataatgtaa gctatttaaa tcaaaataca cctttaacca
    12121 ccgcagaaac agcttcagtt tttgctgaaa tgctcgtatt tgattttatt aaagataagt
    12181 taaaaaaaga agaactctta tctttatatg caaataaaat cgaagatatt tttgcaactt
    12241 tttatagaca aattaatttt acttgttttg aaagacgctt acatgctcaa gaaaatgaac
    12301 ttagtactga agaaatcaat aaaatttgga tggaagaatc tcaaaagatg tttcaagaca
    12361 gcgtaaaact tacaaaaaat tatgcttctt ggtggagtta tattcctcat tttatccatt
    12421 ctccttttta ctgctatgct tatgcttatg cacaactttt agttttagct ctttatggac
    12481 tttacaaaag taaaaaatgt gaaaatttta aagaacttta tatcaaaatg ctttctttag
    12541 gtggaagcgt gagtccaaaa gaactagtag gaatgtttgg atttgatata gaagatgaaa
    12601 atttttggga aataggcata aaagaaattc aaaaactcat caatgaattc atggagttac
    12661 aatcatgcta gaaacaatct taaaaaatga aaattttatc cataccatgc aaaagcattg
    12721 ttatgaagtt atttcacacc ttatagaaga aaatatagaa ttttccatag ttgcaaatac
    12781 aaatttcata gattttaacc ctgaacttcc caaagagctt gatattaaac aaaatcctta
    12841 tgctcttttt gctcttggag gatacacctt tgaatccata caactaaata aagatttcat
    12901 tcaatttcac gcaggttttg gaaatgatga ttttgatagt tttgtaaagg ttgatttagg
    12961 agctatcacg caaattcaag tagaaaatag cattttattc gttaatttta gtctttataa
    13021 acgtgaagat agcaaaaatt tacaaaaatc taaaaatata tttttaaata atccaaaaaa
    13081 taaagatatt ttcaaaaaat gaatctattt gaagagttaa atgatagtca aaaacaagcg
    13141 gtaagccaca ttgatggagc catgcttatc ctagcaggcg caggtagtgg aaaaaccaaa
    13201 actatcacca ctcgtcttgc ttatcttatc ggtgaagtag gcatcccctc acataacact
    13261 cttactctta cttttacaaa taaagcagct agtgttatgc gtcatagagc attaaatttt
    13321 ctacaaggca atcacaatcc tttgctttgc acctttcata aatttggact tttattttta
    13381 aaactccatt ttgaaagatt ggagcgtaaa aatagtttta ttgttatcga tacagatgat
    13441 acaaaaaaaa taattaaaga cttaatccat gataaaaaca aagataatgt ctatgatatt
    13501 atccaataca tatcttattg caaaaatgaa ggcaaaagag taagcaatgt ctttgaagat
    13561 ttaaatttac taaaagaaca taattttgaa aaatatcaaa atgaatacaa atttgccaac
    13621 tattaccgtg cttatgaaga atacttatta aaacaaaatt ttgtagattt tgatgatctt
    13681 ttattgctaa gcaatctcat tttagaaaat gatataaatt ttgccaaaga acaaagctta
    13741 ctttataatt acattacagt tgatgagtat caagatacta ataccttgca atataaaatt
    13801 ctaaaaaatc tatgttgtat gcatgaaaat atcacagttg ttggtgatga tgatcaaagt
    13861 atttatagtt ggcgtggagc aaaaattgaa aatattttaa attttcaaaa tgattttaaa
    13921 aatgttaaac ttgtaaaact tgaacaaaac tatcgttcag tagggactat tttacaagca
    13981 gcaaataatc tcatatctca caatgagcaa cgacttggaa aaactttaat ctgcactaaa
    14041 gatacagggg aaaatattaa aatattaaaa aacgaaaacg aaaaagatga aggtttatat
    14101 atcgctcaag aagtgaaaaa attgctaaat tctggagtag aagctaaaga gatcgccatt
    14161 ttatttcgag ttaatgcact atcaagagca atagaagaag catttatgaa gaaacaaatt
    14221 tcttataaac tacttagtgg tatgcgtttt tatgagagat tagaaataaa agatttaatc
    14281 tcgtatctta gacttatctt aaatccaagc gatgatttgt cgtttaaacg tattattaat
    14341 cgccccaaaa gatccatagg agaaaaagcc ctaaaaaatt tagaagaata tgcaaaaaaa
    14401 cgtcaaattt cactttttga tgccctatgc gaaagcgatg gtggtgtagg aattttaaca
    14461 acaaaaaaag cacaaaatga agcaaatatt tttatacaaa atattcacac tctaaaaagc
    14521 tacgataatg caaaaaaggt ttttgacaat atagaagaat tatttaaaat taaagattat
    14581 ttttcagagc aagatgatgg agatgaaaga atcagaaatc ttgatgagtt ttatgctaat
    14641 ctaagagaaa aactcaaaga agatcccaaa gcttctttag aagatctact tagtgaaatt
    14701 tctttattaa gcgatcaaga taatttagat gaagaatgtg tttgcttgat gagcattcat
    14761 gctagcaaag gtttggaatt tgattatgtt tttataatag gctttgacga aggatttttt
    14821 cctttaaata gcgaagaaaa tctcgaagaa gaacgccgtc ttgcttatgt tggcatcact
    14881 cgcgccaaga aatttctcac aataagtgtt gcaaattctc gtttttatca tggttcaaga
    14941 gcaaatatca atcctagtcg cttcttagaa gaaagtaaat taatcaatga aaaatcaaaa
    15001 aatcaaaata tacaaaaaac tagtttttgc aaaggagatc tagttaaaca taaaattttt
    15061 ggcattggca gggttgttga agttaataaa agcggaaaag aggaaaagct taatattaat
    15121 tttggtggca taatgcgtgt aatcatggca agctttgtgg aaaaagcagt atgaacaaga
    15181 tctttgcagc ctttaaacca aggggtttga gctctaacgc ctttttaagc actttaaaga
    15241 aaaaatataa aaataaaaaa gcaggatatt ctggcactct tgatcctttc gccaaagggg
    15301 ttttaatcgt tgcatttgga caatacacaa aacttttccg ttttttaaaa aaaaccccaa
    15361 aaacctataa agctacttta tggcttggag tttactcctt aagtcttgat gatcaaaata
    15421 taaaagaaat tcaaaatata aaagaatttg atcttgcaaa tttaaaacaa atcattgatc
    15481 aaatgcaagg aattatctcc tatacaccac ctcaatttag cgccaaaaga atcaatggaa
    15541 ctcgcgccta tgaacttgca aaaaaaggta tagaagcaaa tttaaaacct tgtcaaatgg
    15601 aagtatttga ttgtaagatc ttaagctata atcatccttt tttaaatatt gaaatcacag
    15661 tcagtgaagg tgcttacata agatcttatt gtgaactttt tgctagaaaa ctaggtatta
    15721 atgcgacttt aagctcttta gagcgcatta aagaaggcaa atttgtttat aataatgaga
    15781 aaagcttaaa tgtgttaaaa tacattaacc taaagccaaa ttttatcaag gatttaaata
    15841 aactcgaaaa tggtgctaaa atttttgtcg aagaattaga atttcatgat gaaggagatt
    15901 attatattga aacagaaaaa tattttagca taattaatat taaagaaaat acagtaaaat
    15961 atcttctaaa taaggttgaa aaatgttaat attatcaaga aaagaaaatg aaagtataat
    16021 tatcggagaa ggtatagaaa tcaaagtcgt tcaaacaggg aaaggatatg ccaaaatagg
    16081 tatagaagct ccaaaatccc ttatgatact tagaaaagaa cttgttcaac aagtaaagga
    16141 tgaaaatttg cattctgttg ttcagaatga tattaaactt gatgacttaa gcaaaaaact
    16201 aatcaaatga aagcttacgc taaagcaaat atttttttaa aacttaccgg ttttgactca
    16261 agaaaatatc atcttttaga atcacgattt atacttttaa aagatgtttt tgatgagctt
    16321 gagcttgttg acaaagaatc agattctaaa aaagaatttg aaatcattag taattttaaa
    16381 tgcgaaaata atattattca aaaggcttat ttgctacttt ctagaagata taataacgaa
    16441 ttaaaagaat tatttagcaa aaaaagtcta aaactcacaa aaaatatccc agtatgtgct
    16501 gggcttggtg gtggaagtag cgattgtgcg agttttttac tactaataaa tgaaacccta
    16561 aatttaaaat taaacctaca agaacttata aatttaagca tacaactagg aagtgatatt
    16621 gccttttttt taagtggctt tcactctgct aatgtaagta gctgtggcga aattatagaa
    16681 gaatttgaag atgacatacc taatttaaaa tggacttttc cacaaatatc ttgccaaact
    16741 aaagctgttt atgatgaatt tgatagagga atatttgact ttcaaaaaaa caataatcaa
    16801 gcgcaaatat acaaaaaact cagcacaaaa gagttgttac aaaattttaa aaacaaagaa
    16861 ttaaatgatt tatttactcc ttgtgcaact ttatatccta aaatgaagtc ttacttacaa
    16921 gaagattttt ttctaagcgg tagcggtagt agtgttttta aggttgatcg atgaaaatta
    16981 ttgcgagaaa taaaaaagct ttatttgatt atagcatcat agaacgcttt gaagccggaa
    17041 ttgtccttaa aggaagtgaa gttgtagcct taagggcagg aagagcaaat cttaaagact
    17101 cttttgttcg cattataaaa aatgagattt ttttacttaa ttctcatatt tcattacttc
    17161 atactacaca ctctttctat aaacacgaag aaagaggcgc tagaaagctt ttaatgcata
    17221 gaaagcaaat tgataaatta ttaggtaaag taagtataga aggatatact atcgttgcat
    17281 tagatcttta ttttaacaca aaaaataaag taaaagctac ccttgcttta gctaaaggga
    17341 aaaatttgca cgacaagcgt gaaactttaa agaaaaagca agccgattta gaagctaaag
    17401 ctgctatgaa aaattacaaa taaaggaaaa taaatgaaaa aaatttcagc cctattttta
    17461 ataagtttag cattttttct taatgcttgc tccaaggaag aagaaattca aaatgatttt
    17521 atgtttgaag agtatcacaa aggagataaa atagtcttaa atagtgtaaa tggtggaagc
    17581 aaaactttaa taagaacaga taaaggtttt gtggtggaag gagaggaagg aaaagttcta
    17641 atgtttgatt tttttggcac tttttgcacc ccatgtaaag aagaagcttt agatcttagc
    17701 aaactttgga aaaataattc tagcaaattt atcattatag gacttacaca ttttgaagat
    17761 gttagcgatg aaacagttaa aaaattcgcg gatgattatg gtgcttacta ttttctaagc
    17821 aatgacagct ctaatgatcg tattattgct caaattttaa aagatataga ctatcaaaat
    17881 atggagcaac ttccttttaa agttgtttta aaaaatggaa tttatcaaaa aataagcgat
    17941 tactggaata ataatactcc aacaaatttt tatcttggta aaattccaac agaactcatg
    18001 caagaagatt taaataaaat ctacaaagga aaataatgcc aaaaacccaa actctagagc
    18061 aaacaaaact tagtgaacca aaaatgtata aagttatact cttaaatgat gatgtaacaa
    18121 ccatggattt tgttatagaa attttgatga atatttttca tcaaaacctt gagaaagcaa
    18181 gtcaaacaat gttagaaatt catcacaatg gttctggaat ttgtggcatt tacacccagg
    18241 aaatagctct ttcaaaacaa aaaaaagtta tggatgcggc taaacttgct aattttccac
    18301 tacaagcaaa ggtggaagaa gaatgaaata ccaagaaaat ttacaaaaat atcttgataa
    18361 tgccaaaaat ctaagcttaa taaatcacca tgaatttgtt acctgtgagc atgtactgtt
    18421 tgcattacta aaactaagca ctgattttaa ggatatattt gaagaatttt cagatggaga
    18481 tcttgaactt ctagaaactg aattaaaaaa ttacatttct caaaacaatc aagttattaa
    18541 acaagaaata gaacctacaa tatctgttgt tttagatgaa atcttacttt catctaaaaa
    18601 taaaaataat gaaattaaaa ttatagattt tttagaaaag ctcatacagg attcaagaag
    18661 ttattctagc tatctcttaa aaaaacacaa cataaatctt aacaaaattc aagaacttca
    18721 aaatcatgaa aatatacaaa atttaaacaa ccacacaaat gatttaacac ttttggctca
    18781 aaatggcaag attgatcctt taataggaag aaaatttgaa cttgaaagaa tgatgcaaat
    18841 tctttcacgt cgcaagaaaa ataatcctat tttagtagga gaagcaggag ttggcaaaac
    18901 ggccattgta gaaggattag cattagctat tgcggaaaaa aaggtgccta aaaacttaca
    18961 aaatgcaaaa atttttagtc ttgatatggc tagtatactt gcgggaacaa aataccgtgg
    19021 agattttgag aaaagaatta aagaaatttt aaatgaactt gagaaaatac ccaatgctat
    19081 tttatttatt gatgaaattc acactatagt aggagctgga agcacaggag aatctcatac
    19141 tgatttttcc aatcttttaa aaccagctct aagtaatgga actttaaaat gcataggtgc
    19201 aacaactttt atggaatata aaaatacttt tgataaaaat aaacccctaa gtcgccgttt
    19261 tgctaaaata aatgtagatg aaccaagcca agaagaaagc ttgcaaattc ttaaaggatt
    19321 aaaaaacaaa tatgaagaat ttcatcatat aaaattaaac gatgaaattc ttcaatatgc
    19381 tgtaatttgg ggtaaaaaat tttttaatga taaattttta cctgattgtg ctatagatct
    19441 gatcgatgaa cttggcgctt cttttgcttt aaatccaaaa gctaaaaaaa atgccaattt
    19501 aaaagattta gaaaatgttt tagcaaaaat gacccaccat cacaaaatat ttgaattcga
    19561 tcaaaataaa gctttaatga atttaaaaac aaatttaaaa gcaaaaattt ttggccaaga
    19621 tgaagttata gatagccttg tttcatcact taagcaaagt tttgcgggat ttaaaaattc
    19681 caatacacca cgcggagtgt ttttgtttac tggatcaagt ggagttggaa aaacagaact
    19741 ttgcaaagct ttagctgaat ttttaggttt aaatttagaa cgctttgata tgagtgaata
    19801 tgcagaaaaa catgctataa gtaaactaat aggatctccg gctggatata taggttttga
    19861 agagggtgga cttttaagca atgctattcg caaaaatcct ttcagtcttg ttctttttga
    19921 cgaaatagaa aaggctcatc ctgatttaag caataccttt ttacagattt ttgacaatgc
    19981 tgaactcacc gacaatagcg gtcttaaagt agattttaaa aatacaatca ttattatgac
    20041 atctaatcta ggacttaaag aaagcaatga gcttggtttt ttaagtaaaa atgaagaaaa
    20101 aagtaatcgt gctatcaaag atttttttgc tccagaattt attaatcgca ttgataaaat
    20161 tttacatttt aatgatttaa acgatgctat acttgttaaa attatcgaaa aagaacttga
    20221 tgaaatttct aaaaatttaa ataatataaa attatcaatg gatgataaag ccaaaattta
    20281 tttagctaaa aaagcctata ataaagaatt tggagtaagg cttttaaaac gcataatttc
    20341 tgaggaaata ggagaaaaaa tcagcgatga aattttattc ggaaagctta aaaaaggcgg
    20401 tatagctaaa atcaaacttg gtaaaaatgg aaagctcgaa tttatattct aaattactca
    20461 atgcacctaa aaatgctcct gtatttttaa gtcaaaattt agaagctgat tttattgtaa
    20521 aagcttatac ttttggtcta ttcccatgga caagtaaacc tgtaacttgg tggtgtccag
    20581 atcctagatg cattttaatt ccaaatcaaa ttcacatcca aaaaaatatg aaaaaattta
    20641 ttaatctcta tcaaattaaa cttgattatg attttttaaa attaattaca ttatgtcgcg
    20701 atacacgctc tcaaagctgg atagatgatg aatttattac cacttattat aagttattta
    20761 cccaaggcta tgcgcatagc cttgaacttt atgaaaataa tgaacttata ggtggaattt
    20821 atggtttaat tttaggcaag gttttctttg gtgaaagcat ggtaagcatt aaaaaaaatg
    20881 catctaaagt tgccatgatt aaactttgtg atttattaaa accttatgat tttatcatag
    20941 attgtcaagt ttataaccaa catttagaat ttatgggtgc tcataatatt tctaggaaag
    21001 aatttttaaa tattttaaaa gaaaaatgca atcaagaaag tggttttaaa aattttaaag
    21061 atttaattac ttaaaaataa gcgtgaaaat cacgcttatg acatcgcttt agcaacttca
    21121 gcagagcttt cacgaatttt ctccatacac tctcttgctt cttttgcaag ttcaacactc
    21181 tgattaacat cctctaaacc gcttttaata ctctcaacca cttgtgatgt aacattgcga
    21241 atagaattaa tcgtagtggt aatttcatta accgaatgcc ctgttctttc agctaaattt
    21301 cttacttcat cagcaacaac agcaaaacct ctaccatgtt caccagcacg tgctgcctca
    21361 atagcagcat ttaaagcaag cagattagtc tgatcagcaa tatcactaat agtttgaata
    21421 atagatttaa tttcatctga ttgttgattt aaagaagaaa caagatttga actttgagac
    21481 atcatatcag caatattctg aacatttgaa acagtgtttt caattacacg atctccatct
    21541 tgagtaagat tatcattttt ttctgcaagt tcacttatga gacgaagttt ttcttgatct
    21601 tttttaactt gttcgcttat atctgtagca aatttaataa ccttgtaaat ttttccatca
    21661 tcatttttaa ccggattata acttgcttca aggtatactt ttttattatt tcttccgtat
    21721 cttatatatt tacctgattg aaatttaccc tctcttaaat cttcccaaaa ttgaacatag
    21781 tccttagagt gtctataatt agaatcacag aacatactat gatgctttcc tttaatctca
    21841 tcaatattaa aatccatagt tcttaaaaaa ttttcattag ccgtaataat agtcccatca
    21901 ggtttaaatt caataatagc catagaacga ttagcagcag caatagtatt tctaagatca
    21961 agcatttcat aatgtctttg agttatatca ttggcaaatt taataatttt ataaacataa
    22021 ccattattat cactaattgg aagataattt gcttctaaat aaacatctat ccctccctta
    22081 gctatacgtc taaaaagacc acttctagct tttccatctc ttaaatcttt ccaaaaatca
    22141 ctatatgctg aagaattaac aacttcaggc aaacaaaaca tactatgatg cttacccttg
    22201 atctctgaaa gggagtattt catagttgtt aaaaaatttt gatttgcctc taaaataacg
    22261 ccatcggtag taaattcaat taccgccatg gtattcccaa tagatcttaa aatatctcct
    22321 aaaccattac attttttttc aagttgttca attattttag tattattttt cttagcacca
    22381 aacataaaac tcaccttttt aataataaat tatttt
//
LOCUS       DARGEM010000012        22154 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.012, whole genome shotgun sequence.
ACCESSION   DARGEM010000012 DARGEM010000000
VERSION     DARGEM010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.012"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..554)
                     /gene="cdtC"
                     /locus_tag="SFZ78_000378"
     CDS             complement(<1..554)
                     /gene="cdtC"
                     /locus_tag="SFZ78_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG8211283.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAA"
     gene            complement(565..1362)
                     /gene="cdtB"
                     /locus_tag="SFZ78_000379"
     CDS             complement(565..1362)
                     /gene="cdtB"
                     /locus_tag="SFZ78_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG8211284.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(1359..2165)
                     /gene="cdtA"
                     /locus_tag="SFZ78_000380"
     CDS             complement(1359..2165)
                     /gene="cdtA"
                     /locus_tag="SFZ78_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG8211285.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            2278..2511
                     /locus_tag="SFZ78_000381"
     CDS             2278..2511
                     /locus_tag="SFZ78_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG8211286.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            2512..4074
                     /locus_tag="SFZ78_000382"
     CDS             2512..4074
                     /locus_tag="SFZ78_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG8211287.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            4074..5198
                     /gene="cydB"
                     /locus_tag="SFZ78_000383"
     CDS             4074..5198
                     /gene="cydB"
                     /locus_tag="SFZ78_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG8211288.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(5392..6087)
                     /locus_tag="SFZ78_000384"
     CDS             complement(5392..6087)
                     /locus_tag="SFZ78_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG8211289.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(6203..6898)
                     /gene="ung"
                     /locus_tag="SFZ78_000385"
     CDS             complement(6203..6898)
                     /gene="ung"
                     /locus_tag="SFZ78_000385"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG8211290.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDWKIV"
     gene            7169..8575
                     /gene="aspA"
                     /locus_tag="SFZ78_000386"
     CDS             7169..8575
                     /gene="aspA"
                     /locus_tag="SFZ78_000386"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG8211291.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            8592..9929
                     /locus_tag="SFZ78_000387"
     CDS             8592..9929
                     /locus_tag="SFZ78_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8211292.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVVLGFVLAPMLI"
     gene            10035..11396
                     /locus_tag="SFZ78_000388"
     CDS             10035..11396
                     /locus_tag="SFZ78_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEG8211293.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAT
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEEQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            11406..11801
                     /locus_tag="SFZ78_000389"
     CDS             11406..11801
                     /locus_tag="SFZ78_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG8211294.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKINLICRKDKS"
     gene            11798..12421
                     /gene="lpoB"
                     /locus_tag="SFZ78_000390"
     CDS             11798..12421
                     /gene="lpoB"
                     /locus_tag="SFZ78_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG8211295.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTITKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            12504..13841
                     /locus_tag="SFZ78_000391"
     CDS             12504..13841
                     /locus_tag="SFZ78_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211296.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINIQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAIISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            13851..15053
                     /locus_tag="SFZ78_000392"
     CDS             13851..15053
                     /locus_tag="SFZ78_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211297.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEATLK
                     QIANRISGDILNAIYPLKVAAVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            15212..15520
                     /gene="rplU"
                     /locus_tag="SFZ78_000393"
     CDS             15212..15520
                     /gene="rplU"
                     /locus_tag="SFZ78_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG8211298.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            15531..15785
                     /gene="rpmA"
                     /locus_tag="SFZ78_000394"
     CDS             15531..15785
                     /gene="rpmA"
                     /locus_tag="SFZ78_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG8211299.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            15892..16929
                     /gene="obgE"
                     /locus_tag="SFZ78_000395"
     CDS             15892..16929
                     /gene="obgE"
                     /locus_tag="SFZ78_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG8211300.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASVGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            17052..17807
                     /gene="proB"
                     /locus_tag="SFZ78_000396"
     CDS             17052..17807
                     /gene="proB"
                     /locus_tag="SFZ78_000396"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG8211301.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            17881..18798
                     /locus_tag="SFZ78_000397"
     CDS             17881..18798
                     /locus_tag="SFZ78_000397"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8211302.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            18761..19414
                     /locus_tag="SFZ78_000398"
     CDS             18761..19414
                     /locus_tag="SFZ78_000398"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG8211303.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            19411..20196
                     /locus_tag="SFZ78_000399"
     CDS             19411..20196
                     /locus_tag="SFZ78_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG8211304.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            20202..21038
                     /locus_tag="SFZ78_000400"
     CDS             20202..21038
                     /locus_tag="SFZ78_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG8211305.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            21099..21524
                     /locus_tag="SFZ78_000401"
     CDS             21099..21524
                     /locus_tag="SFZ78_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG8211306.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            21535..22047
                     /locus_tag="SFZ78_000402"
     CDS             21535..22047
                     /locus_tag="SFZ78_000402"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG8211307.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            22050..>22154
                     /locus_tag="SFZ78_000403"
     CDS             22050..>22154
                     /locus_tag="SFZ78_000403"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEG8211308.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVL"
BASE COUNT         7836 a         3005 c         3885 g         7428 t
ORIGIN      
        1 gcagctgtta aaggtggggt tataatcatt agttcattta cttcagcaaa aaaaatagga
       61 tctagggtgc aaggggctat tccaaagcgt ttttgtatag gaatatttgg attaaaaaaa
      121 gttactatac attcatcaga ttccaaaact aaagaacgaa tttgcacagc tgaagttgtt
      181 gttggcatta tagaaaatac agtttctaat ttaccatctt ttagatcatc ttgacaagat
      241 tttgctccaa aggttccatc ttctaagatg gctaaacaaa gatcgctttc ttttggattt
      301 gtaaattgca cataaccaaa aggaagttca tcagctaatt tatctttttg ttttaactca
      361 tcgcttaaaa caatttcttt aatattccaa ttttgatcaa taggatcttt tgaggtatcc
      421 ctaaaggcgc ttaaaaaaat tcccgtttct aagcttctta tagaaaccat ttcggtaaaa
      481 tctttcaaat ctccagtagg agttgcaaag gctaaagtta taaacataaa aaacaaagta
      541 ataatttttt tcatattaaa tgtcctaaaa ttttctaaaa tttactggaa aatgatctga
      601 aactatatga gatcttaaac ttgcaagcat taaaattgca gctaaaagcg gtggagtata
      661 ggtttgttgt ctatttgaat ttcctgtaat tgcataatca agagtccctc cgcttgcttg
      721 agttgcgcta gttggaaaaa ccactctaat tctatttgct aattctctat ccactgtact
      781 tgttatagta gaaggatcac ggttaaaatc ccctgctatc atccagttaa cttgaggcat
      841 atttgcaaaa tgtgcatcta cagctgtgat aattgctcct acatctgttc ctccattagc
      901 taaagcatgg atattgaaaa aagcatcatt tccattgcga attcctataa tgggtcttga
      961 aactgtagta ggtggaggta aaacaatcac ttcttcagct tgcattcttg aaactatagc
     1021 taaatttaca cgattagctc ctacatcaac gcgagaataa taaataaaaa ccctatcagg
     1081 ccttgaaaga gttcctaaat tccactcata ttcatcaata ggtgttccac cttgttgcac
     1141 atggcgtcct gttggagtgg ctgttcttgg taaagttcct gcttcttgta tcattaagat
     1201 atctaagggg tttgctccac ttacaagttg tcttacgcta acactccatt tgctttctgt
     1261 ggctgcggat gagccttgca aattccaagt gccaacatta aaattttcta aatttgcaaa
     1321 agcaaggtta aaagataaaa ataaacatat aatttttttc atcgtacctc tccttggcga
     1381 tataaaggtt ttgcagtaaa aggcggagta gttaaaaacc attgttgatc aaaattatct
     1441 ttttttgcac actctacggt aaaaatttta aaaaccttgt gaaaatcacc ataaagattt
     1501 gtaataggtg cttgtatgca ttttccattt cctaaatttt taatttgaac cgctgtattg
     1561 ctcataggga taagtttcca catttgtgcg tgattgcttg catcgcaagg ataatggaca
     1621 attccattac cataagcatt aagacaagta ttggttttgg catttttaat cattgcaaaa
     1681 tcattaggat aaagcaaaag ttgccaaact ctagcatcgc caaatccttt actatcgatt
     1741 aaagtatagc cccaaatcca atttccttgt gctaaagccc aaaccgttaa agctgctccg
     1801 ctagggccta aaatggttaa aaaatcagaa accgcagggc gattttcaaa aattaaaaca
     1861 tcattaaaag cttcgtcttt aaagcgagga ttgatcccat ttactgcatt attgttggca
     1921 ctattgcttg ttctagttaa aggtggggta ataggagtaa taggtactaa atcagcaccg
     1981 ctaattaaac ttggaatttc ttgattggta ggaaaagtag gttcaagtcc tagttttaaa
     2041 ggatcagtat cttcaaattc gccaaatgaa cgccccaaag gatttacatt ttcaaattta
     2101 gaagaacatg cataaagaaa aaaagtcata aaacaacata aaataaaaac tataattttt
     2161 tgcattaaaa accttgatat gtatttaaat ttttaagaaa ataataacat aaatttcatt
     2221 ataattttcc gctttttaaa aatgttttat tttgttgttt ttaaaggtag aatttacatg
     2281 tatcttaaac acttatattt tagcatctct caaattttta atttttacaa agaaggtttt
     2341 aaaaatttaa ctcttggaaa gaccctttgg aaaattattt ttatcaaact ttttgttatg
     2401 tttgtgattt taaaactttt tgtttttgat gtaaatttta attctatttt taaaagcgac
     2461 aaagaaaaaa gcacttttgt actcaaaaat cttacactcg aaggaaaata aatgaacgaa
     2521 cttagtagcg ttgattggtc aagagcgcag tttgctttaa ctgcacttta tcattttttg
     2581 tttgtgcctt taaccttagg cttgtctttt atgatcgcta tcatggaaac catctatgta
     2641 aaaactaaaa atgaaagatg gaaaaaaatc accaaatttt ggctttcatt atttgctata
     2701 aattttgcta tcggtgtagc tacaggcatt ataatggaat ttgaatttgg aacaaactgg
     2761 gcaaattata gctggtttgt gggtgatatt tttggtgcac ctttggcggt tgaaggtatt
     2821 atggcatttt ttttagaggc tacttttttt gcagttatgt tttttggctg ggataaagta
     2881 agcaagggtt ttcacttact ttcaacttgg tgtgtggcta taggaagtaa tctttctgct
     2941 ttttggattt tagtggcaaa tggttggatg caatatcctg taggaatgag ctttaaccct
     3001 gacacagcaa gaaatgaaat gcaaagcttt tttgaagtag cactttctcc tgtagctatt
     3061 tcaaaatttt tacataccat aggcagtggt tatgtgattt cagctttatt tgtaatggga
     3121 atttcagctt ggtttatgtt aaaaggacgc catattatcg aggctaaaaa aagcttagtt
     3181 gtaggagcta gttttggttt ggtttgttca atctttttgt ttttcagcgg agatgaaagc
     3241 gcttaccgtg taactcaaac tcaacctatg aaacttgcag ctatggaagg ggtttatcaa
     3301 ggtgaacatc gtgcaggact tgtacctttt ggaattttaa atcctaaaaa aaccatagat
     3361 aataacgaaa gtgtgttttt atttgacatt actatacctt acgctctttc tatattagga
     3421 aaccgtgatc caaattcttt tgttccagga attgaagatt tgatctatgg aaatgaaagc
     3481 aaaggtatag aacctatgca aaatcgtatc gatagaggaa aaatcgctat acaagctcta
     3541 aaagactata aacttgctaa agaaaacaat gatacaatag ctatggcaaa tcacaaatcc
     3601 attttagaaa ctcattttaa agattttggt tacggatatt tagaaaaacc aagcgatact
     3661 attccacctg tggctttaac tttttatagc tttcatatca tggttgcttt aggaagtttt
     3721 ttctttttac ttttcatcgt tacgctttat cttaccatgg caaatgatat tgagaaattt
     3781 agaaaagtac tttgggtgtg tttgttatcc attccattgg gttatattgc cgctgaagca
     3841 ggttggattg ttgctgaagt aggcagacaa ccttgggcaa ttcaagactt gcttcctgta
     3901 catatcgcag caacacaact tggaaaagtc aatgttcaaa tttcattttg gatttttgca
     3961 gtacttttta cagccttatt gattgcagaa gttaaaatca tgcttactca gattaaaaaa
     4021 ggttttgacg cacatgcagg acatactcca cttatgggca aaggagaaaa ataatgtttt
     4081 ttggtttaga acttgaaggt ttgcaaattt attggtggtt gattttaagt ttactcggcg
     4141 gacttttggt ttttatgttt tttgtccaag gtggacagac tttaatcgat gagcttagca
     4201 aggatgagct tgaaaaaacc atgctagtca attctttagg gcgtaaatgg gagcttggtt
     4261 ttacaactct cgtacttttt ggcggagcag cttttgcagc ttttccactt ttttatagta
     4321 caagttttgg cggagcttat tgggcttggc tttgtatttt attttgtttt attttacaag
     4381 ctgtggctta tgagtatcgt aaaaaagaaa ataatgttta tggctctaaa acctatgaaa
     4441 tttttcttaa aatcaatggt tatttaggtg tatttttaat cggagttgca gtaagtagct
     4501 tttttagcgg ttctgaattt atcttaaatg agcataattt tgtttcttgg caaaatcctt
     4561 tgcacggctt agaactttta cttaatcctt ttaattatct cttaggctta gctttagtat
     4621 ttttagcaag gcttttaggc gcagcgtatt ttataaacaa tatcaatgat gagaatatca
     4681 aaataagagc tatgaaaaaa cttatgatca atagtatttt atttttacct tttttcttag
     4741 gttttttagt gtggattttc ttaaaagatg gttttagtgt agatgcaaat ggagttgtaa
     4801 gcatgagtgc gaatttatat ttatataatt tcttaaatca aatgattttt gctgttttgc
     4861 ttgctatcgg tgtgatttta gtgcttttag gtatgtttca aggagcaaaa ggttgctcta
     4921 aagctatttt taccctagga cttggaacgg ttttaacagt ttttgcttta ttatcaagca
     4981 ttggtttagg tcaaagtgct ttttacccat ctttaagtga tttgcaaagt tctttaactt
     5041 taaaaaatgc aagttcaagc tattatactc taagcgtcat ggcttatgtg tctttacttg
     5101 taccttttgt tttagcttat attatctatg tttggaatgc aatggataaa gtaaaaatca
     5161 cacgcgaaga aatcgcaaac gatgatcacg catattaagg agaaaaaatg ttacatgctt
     5221 tgtttttatt ggcttggcct ttggtaattt atctgagcta taaatttata atgctaaata
     5281 tcaatcaatt agaaaaagat agcaaactat aaagcaagat aagatttaaa ccgatataag
     5341 tataaatctt ttcaaaatat tgcgatttgc ccatttttgg gcatctttta atcataaatc
     5401 ttttaaagct tcattagcag catcaagggc gtgaataagg cttgtgtcaa aaattttgat
     5461 atttgtatca tttttagata ttaataaacc aatttcagtg caagctaaaa gcactccttt
     5521 tgcccctttt tcttgtagtt tttttataat atttaaatat ttttctttag aatcttgctt
     5581 gatttcacct ttgcaaagct cattaaaaat gatatcatta acgattttta tatcttcatc
     5641 actaggagta ataacgctaa tattttcttc aatcagcatt tttttataaa aatcctgcgt
     5701 cattgtgtat ttagtaccca ataaaccaat tttttgtatg ttttcttgtt ttaaagcctt
     5761 agcagaactt tttgcaatat gtaaaatagg gatatttata ttttgttgaa tttcatcaaa
     5821 aaccttatgc atagtattag ttgcaattat tataaaatta gcccctgcaa gttctaattt
     5881 tttagcacat tgagtcaaaa tttgtgcagc ttcttgccat ttatcttggc tttgtaaatt
     5941 ttctatttct tcaaaattaa cactgtaaag taaaattttt gcagaattta aagattttaa
     6001 tttatcattt atagcttgat ttattgtttt ataataagta atagtgcttt caaaactcat
     6061 tccgcctata ataccaatgg ttttcatttt tctccttaag aattaatttt tgagtcgttt
     6121 tattacaata tatttcatag aaatatgatt tatttttaaa taaatatatt ttaatatttt
     6181 tattaaagtt taaaataatt ttttaaacta ttttccaatc tataggaatt ttaccaactt
     6241 tttttaaaaa ttcattagcc tttgaaaaat gcttacaacc taaaaatcct gttctagcta
     6301 aagggcttgg gtgagctgct tttaaaatca aatgcttagt attatcaatc aaaatctcct
     6361 tgttttttgc gtaatttccc caaagcataa aaacaagccc tgatttttca ttacttaatt
     6421 tatgtattat agcatcacta aattcttgcc aaccccacga actatggcta gctgctttat
     6481 ttgcttcaac gctaagaata gaatttaaga gcaaaactcc ttgttttgcc caagagctta
     6541 aatctccgct ttttgctgga gtgatgttta aatcattttg caattcttta aaaatattat
     6601 taagacttgg tgggattttt acattttttg gaaccgaaaa actaagcccc attgcttgat
     6661 ttggttgatg ataaggatct tgtcctagga taataatttt aatttctttt aaaggacata
     6721 aattaaaagc attaaagatt aaatttgcag gcggataaat aactatattt tgattaatcg
     6781 catttaggta ttgttttttg atttctagaa aatatttttt ttgaaattcg tctcttaaaa
     6841 attctttcca gtcatcattt attttaatct tatctatgtt tattgtaatt tcttccatat
     6901 tatccctaat tatttaaatt attaaaaatt ttattctaac aaaaaagctt gcaaaaatat
     6961 attaattttt tttgaagtaa ataaaatttt ttatattaat aaaaattaaa tataaagaca
     7021 taataggata taaaaatact taatttattg tatttgaaag tagttttctt attaaccaat
     7081 tattaactaa aaatgcaata tcattatttt atgatttaaa tcaaaaattt ttgattttaa
     7141 attaaaatac ttttatgaaa ggttcaaaat gggaacaaga aaagaacatg attttattgg
     7201 ggaattagaa atctctgatg aggtttatta tggagtgcaa acttttagag ctgttgaaaa
     7261 ttttgatatt tctcatgata gattaaaaga ttttcctcgc tttgttagag ctttggctag
     7321 agtaaaaaaa gctgcagcta tggcaaatca tgaattaggt cttttggata aaaatatcca
     7381 agatgcgatt attaaagcgt gcgataaaat tttagaaggt gggtattatg atcaatttgt
     7441 agtagatatg atccaaggag gtgctggaac aagtacaaat atgaatgcta atgaagttat
     7501 agcgaacata ggacttgaac ttatgggtca taaaaaaggt gaataccaat atcttcatcc
     7561 aaatgatcat gttaatttaa gccaaagtac taatgatgct tatcctacgg ctttacacct
     7621 tgccttacat gattatttaa gtgatttggc aaaagctatg gaacatctaa aaaaagctta
     7681 tgagagaaaa gctgaagaat ttaaagatgt tcttaaaatg ggtagaaccc aactgcaaga
     7741 tgctgtacct atgactttag gtcgtgaatt taaaactttt gccgtaatga taggtgaaga
     7801 tatacaaaga gtattagaag ctagaaaatt gattttagag atcaatttgg gtggaactgc
     7861 tattggaaca ggaattaatt ctcatcctga ttatccgaag gttgtagaaa gaaaaataag
     7921 agaagtgaca ggttttgaat atactgtggc tgaggattta atcgaggcga ctcaagatac
     7981 gggagcttat gtacaaattt caggtgtttt aaaacgtgtt gcaacaaaac tttctaaagt
     8041 atgtaatgac ttaagacttt taagtagtgg tccaaaatgt ggtcttaatg agattaatct
     8101 tccaaaaatg caaccaggta gttctatcat gccaggtaag gtaaatcctg ttattcctga
     8161 agtagttaat caagtttgtt attttgttat tggagcagat gtaactgtaa cttttgcttg
     8221 tgagggtgga caattacaac ttaatgtttt tgaaccagtt gtagcatata gcttatttaa
     8281 ttctgttgta atgctagaaa aagcaatgta tactttagct gataaatgta tagatggtat
     8341 taccgcaaat gaaaaaattt gttcagactt tgtctataat tcagtaggta tagtaacagc
     8401 tttaaatcct tatattggtt atgaaaattc agcttctata gctaaagagg caatgaacac
     8461 tggaaaaaga gtggctgata ttgcgcttga aagagggctt ttaagtaaag aacaaattga
     8521 tgaaatttta actccatcaa atatgctaaa ccctcacatg gaagctaaaa aatagcattt
     8581 taggatttaa tatggatata atgataattt tgcaagtaat cgtccttctt ggggcgattt
     8641 ttatcggtat tcgcctaggc ggtattgcta taggttatgc tggaggatta ggtgtagtta
     8701 tattagggct tgttttaggt atgaaacctg gtaatattcc ttgggatgtt attttaatta
     8761 ttgccgcagc tattgcagca atttctgcta tgcaacaagc aggtggactt gattacatgg
     8821 taagggtgac agaaaaaatt ttaagatcaa gtcctaaatt tataaattat ttagctccag
     8881 cttgtgggtg gttgcttaca attttagcag gaacaggaaa tgcagtattt tctttaatgc
     8941 ctgttgtagt tgatgttgca aaatctcaaa acataaaacc tagtgttcca ctttcattaa
     9001 tggttgtttc ttcgcaaatt ggaatcactg cttctcctgt aagtgcagct gtggtttata
     9061 tgagcggcgt tttagagcca cttggatgga attatccaac tttaattgga atttggatta
     9121 gcacaacttt tgtagcttgt atgcttgcag cttttatagt gagtttaatc actcctatgg
     9181 atttgagtaa ggatagtgtt tatcaagaac gattaaaagc aggacttgta aaggatgcag
     9241 gagctgtttt gcatggcgaa gataaaccag gtgctaaact ttcagtggta attttcttga
     9301 tcactgtttt ggcagttgta ctttatgcaa ccgcaatttc aagtaatatt aaatggattg
     9361 atcctgttgt ggttccaaga gatgcagcta ttatgagctt tttgcttact gcagcaactt
     9421 tgatcacttg gctttgtaaa gttgaaccag gtaaaattct tgacactagt gtatttaaaa
     9481 gcggtatgac tgcttgtgtt tgtgtttttg gtgtagcatg gcttggaaat acttttgttg
     9541 caggacacga agcttctatc aaagaagtag caggcgactg ggttaaacaa acccctgcta
     9601 tgttagcagt tgcatttttc tttgcaagta tgcttttata ttcccaagca gcaaccgcaa
     9661 aggccattgt acctgtaatt atcactgctt taggaatttc agcagcaaat ccgcatgatt
     9721 cttatatgct tgtagcttgt tttgcagcag tttcggcact ttttgtgctt ccaacttatc
     9781 caaccttgct tggtgcagtg caaatggatg atacaggaac gactagaatt ggtaaattta
     9841 tatttaatca ctcattcttt ataccagggg ttttagctat tgcaattgct gtagtattag
     9901 gctttgtatt agctcctatg cttatttaaa tcaaacccta ggtttttctc ctagggttaa
     9961 atttttttca ttagttttta agtatatact acgttataat attcattttc aattttcttt
    10021 aagaaaggaa tttaatgaag ataaaagttg ggttgatttt ttcaggtatt gtttgccttt
    10081 ttttaacagc ttgtgttaat caggttaaac aaaatacaac atttgaaaat actttaacac
    10141 aaaaatattg tggtgatgat tttttcaatc aaaatttaga aaaaattaaa aaaaatgatg
    10201 atgtcattta tacaggatta aatgcaggtt tgattgctag aaattgtggt gattttaata
    10261 aaagtaatgt attttttgat gctgtagaag aatcttataa atatgatgtg gatttagaaa
    10321 atgtaagccc taaagcaact aaatttgttg gtacaacctt gcttaatgat actatagtag
    10381 attatgatgg ttctttatat gaaagaatta tggttaatat atataaagct ctaaactata
    10441 tggaagaaga tgattatgaa aatgcaagag ttgagtttaa tcgtgcttta atgcgtcaag
    10501 ataaggcaaa agaatatttt gctaaagaaa ttgaaaaaaa tcgtgctgat ttagataagg
    10561 caaaagaaga taaaaattat gataaaaata tgaatgaaaa ttcaaaagtt atagaagagc
    10621 aatatgacaa cttatttaaa gaatttgata caacaaaaaa tttcataaat ccttatgcga
    10681 cttatcttgc ttcaatattt ttctttatgg ataaagatta tagaaaagct gcagatttat
    10741 ttagagaagt agctattatt tatccaaaaa acaaaactat caaaaaagag gctaaaattt
    10801 ttaaagaata tgccacaaaa ataaaagtca aaaaagctaa aaaatatgtt tttgtagttt
    10861 atgaaaatgg atttggtgta gttaaggatg aatttgcttt aaccttacct tttatagtgg
    10921 ataaaaaaat tattagcaca aatattgctt tacaaacctt aaaaaaaagg gaagcttctt
    10981 ttgcaaattt aaatataaat ggtcaaaata caaatgattt tgtagattta gacaatattg
    11041 tcgctactga atttaaaata aatatgcctg caatgattgc taaagcctta gctcaaacta
    11101 taattaaaac cactttaaat gtagctgttg caaataatga ctctacaggt ggatggctaa
    11161 gtcttgcaac agcagtagca actgctgcaa ccaataaagc tgatgtgcgt tcttggagag
    11221 gtttaccaaa aagtattgcc atagcaacaa tagaaaacga cggaaattta gaaatcaaag
    11281 atccacaagg caatattttg tttcaaaaat cattggataa aaataaaaat gctcttgtga
    11341 tagtgcgttc ttttgctccg tatttacccg caagtgttgc tatcatggaa aaataaggct
    11401 aaaagatgaa aaaaaatatt ttatttattt taatgttttt acttagtgct tgtgcaccaa
    11461 gttatcaaat aaattcaaat caaaatactg taattttagg ttcaaattta ccaaaaagtt
    11521 tagtaaaaca atttcaaaag cgtataaata gcaatggtta tttagaattt gaagtgattt
    11581 tacgcagtac ttttgctaaa gatgtaattt ataaagtgga ttggttagat aaagatggtt
    11641 ttgtgctaag agatgtttta aatgaggact atcaagccct tagaattcca gcaggacaag
    11701 aggtaattct tcgtaaactt gcatctgata caagagcgaa ggattttaga ttagaaatta
    11761 aagcaaaaat taatctcatt tgtaggaagg ataaatcatg aaaaaaacaa aaattttagg
    11821 aacagctctt attggagctt tgctttttag tggttgtgcg caaacagctt atacagatgg
    11881 aaaggcaagt caggtaaaaa aaggcgatgc tttaaccttg ggtcttgata gacaagattt
    11941 tgaaagtgca gctgaaacta tgataaatag tatgttaagc gatcctgctt ttgcaaatat
    12001 taaaccaggt acaagaaagg ttattgctat tggtagggtt gtgaatgata ccccgcaaag
    12061 aatcgatact gaaaaactca ccgcaaaaat cacttctgca ttaagaaaat caggtaaatt
    12121 tgttctaact tcagcagttg ctgcaggcgg agcacttgat agcatgagtg aagatgtaag
    12181 agaattaaga gataatgatg agtttaatca aaaaaccata acaaaaaaag ggacattggt
    12241 atcgcctgat ttttctcttg cgggtaaaat tagacaagat aatgtaaaac ttagcaatgg
    12301 taaaactcaa gtagaatact ttttcttgct aagacttact gatctaacat caggtttagt
    12361 ttattgggaa gatgagcaaa ctattgataa aaccggttct agtaaatcag ttacttggta
    12421 aaataaaaat taatttatga ataaattttt ttagctcaag tgtttagctt gggctttttt
    12481 tatgattttt aaaaggatac gaaatgaaaa aaatattatt tatcggctct ttagttatgg
    12541 caagtttact ttatgcacaa ggttcccagc ctgtagaaat tacacaacaa gatataaata
    12601 ttcaaaatga aatgtctgac gcaagtacta aggatattac cccaaaatca attgaagatt
    12661 tttttgaaga atttgccgat aatttcggta tagaatatgg tataaccaaa gatggaaaaa
    12721 ctttttatac aggaaaaagt actgttgctg taaatgatac tgatccacaa tttgcacaag
    12781 ctttacaaaa tgcttatcaa aaagcaatgt taaatttaca aagcgaattt ataagagatg
    12841 cttttggaag aattgctaca agcaagattc aaaattatga agcagacaat tctactaatg
    12901 ctaaggaatt tgatgaattg ccaaaaggtg ataaggttga tcaaatttta aataaactta
    12961 cacaattagc tggtgctcag cttgataagg cattaaaaga tttaggtata gatacaaatt
    13021 ctttaagcga agacagaaaa aagactttat taaagcaaga atttcttaat aaaactatga
    13081 caaatgccat aggttctatg agtggacttg ttcctgtgca aactatagtt acacaaagaa
    13141 gaggtgagta tgatgtaggt gttattgcta ttatttccaa taaaactcgc caattagcaa
    13201 aagatatggc actagcaaga cagagtgcta ttaagggtaa aggcaaggca ataagtgagt
    13261 atctgccaaa agatacaaaa ggctttttaa atgaatatgg aattcgctta gtttatgatg
    13321 aaaatggtgc acctattatt ttaagttatg gaaactgggg ttatgtagca gatcctagca
    13381 atgctaaaaa aacaaatatt ttagaagata gagccaaaga aacagcactt actatggctg
    13441 atgctgctat tatagagttt attaatacaa atttaagtct taaagatgaa agaacaactg
    13501 gtgatactta cgaggaaatc atcaaacaaa gtattaatgt taatgatagt tccactcaag
    13561 aacaaactca aaacataaca aatattattg acaaagtaaa tagtaaaata aaagcaagcg
    13621 caagcggtaa aattcgtggt attcgtactc ttaaaaaatg gagctataca agtgaaaatg
    13681 gtattgaaca tgtaggagct gtgagatttt attcttatga aaatttagct aacacaaatg
    13741 aggctttaaa ttcaaagtca aatgcaacaa aaaatgaagc taaaaaatct tctagcatac
    13801 aaagaagttc taatgttgta aatagcatgg atgattttta aaggtaaaag atgaaaataa
    13861 ttaaaattct ttttttaggc ttatttttaa gcctaagtct taatgctaaa gttataacca
    13921 caacttcaac aaaatcaagc acaggtgaag gcacaggctt gactagggaa gatgcgataa
    13981 acaatgccat tatagaagct ataggaaaaa tgagtggagt aagcatcaat tctcttaaga
    14041 aatctaacac tagcgtttca actgataatt caggttcaaa tatacaagat aattacagcg
    14101 agcaaatttc aaaagccacc aaaggtagag ctgatactta tgaaatcaat agtgttgaac
    14161 aagatgcaaa tggtaaatat acagccaatg taacgatttt taaaaccaca acaacaaaaa
    14221 agtatcaagc tccaggttta agtgcagata atagaagaag tattactgtt tttgattcta
    14281 ctccagatgc tgcaaaaaga ggtataggct cagctttgca acaaaaaatc atttctgatt
    14341 tattgcaaag tcgtaaattt aatgttttag accgtgattc tagtggctat tatgaaatgg
    14401 aaaaagcttt aatcaaaagt ggcgacgcag ctagcgatga agtttataaa cttaaaaatg
    14461 tgttagcaac agattatatt ttattgtttt ctatttcagg acttgaaggt aaacaaaaaa
    14521 caagcaattt aacaggaaaa agcaaaactg aaattgaagt tatcgtagat tatcgtgtgc
    14581 ttttatttgc tacaagacaa attaaatttt ctaatacttt aagcatgaaa gtcaatctta
    14641 aagacaatag tcttagtgcc aatgaagcta cactcaaaca aattgcaaac cgcatttcag
    14701 gagatatttt aaatgcaatt tatcctttaa aggttgcagc tgttgaaaac aatgaagtaa
    14761 tattttctca aagcttaaat caaggtgatg tttatgaatg ttttgctctt gggaaggtta
    14821 taaaagatac ttatacaaaa gaaaatacag gaagagtaga aagcaaaaca ggaagtattg
    14881 aaatcactcg cacaagccct aaattttctt atgcaaaaat cacagaaggt agtgtaaaag
    14941 tgggcgatat ttgcagacct ttaagtaata ctggtagtgg aaatggctac actataggtc
    15001 gtgatgcaaa ttatcaaacc caagaaggcg gcggagtaaa tctaggcttt taaattttta
    15061 gagtttgatt tttctcaaac tctaaactct ttcttaaatt catcaaaaat taaagaaaaa
    15121 ttttgtaaaa tcgaaatttt attaaaccac taaagctttt aaatccgtta ttacggtgct
    15181 ttatggtact accaatttat aaggaaaagc aatgtatgct attatcaaac acagcggaaa
    15241 gcaatacaaa gtaagtgttg gcgatgagct aaaactagat cactttgaag ctgaaagcaa
    15301 agcaagtatt gaagtaagcg aagttcttgc tatcaatgat aaagaattaa aggtaggtgc
    15361 gcctttcgta gcaggtgcaa aagttgtttt ggaagtgatc aatcacggaa aagataaaaa
    15421 agttgtgatt tacaaaaaaa gacgcagaaa agattctaaa ctcaaacgcg gttttagaag
    15481 acaatttact cgcgttgtag taaaagatat taaagcttaa ggagtaaaga atggcacaca
    15541 agaaaggtca aggttcaact caaaataacc gcgattccat aggtcgtcgt ttaggtgtta
    15601 aaaaatttgg tggcgagttt gttagagctg gaaatattat catccgccaa agaggaactg
    15661 caactcatgc aggtaacaat gtaggcatgg gaaaagatca tactatcttt gctctaattg
    15721 atggttttgt aaaattcgaa agaaaagaca aagatagaaa aaaagtttct gtatatcctg
    15781 cataagtttt taggacgctt tttagcgtct tgaaaacttt aaatttataa atttaacttc
    15841 ttttatttac tcaaatttag ctttataaat ttaaagtcaa aggcaattta aatgtttatt
    15901 gatagtgtta aaattacttt agcttcaggc gatggtggca aaggtgctgt aagttttcgc
    15961 cgtgaaaaac atgttccact tggtggccct gatggaggag atggtggaaa tggtggtgat
    16021 attattttcg tatgtgataa taatacccac actcttgtaa atttcaaagg caaaagagaa
    16081 ttacgcgcgc aaaatggtgc tggtggaatg ggacgcaata aaaatggcaa aaagggtgaa
    16141 aatttagaac ttatagtgcc cgaaggaacg caagttatcg atgtacaaac caatgaaatt
    16201 ttacttgatc ttaccaaaga aggacaaaga gagctttttt taaaaggtgg aaaaggtgga
    16261 cttggcaaca cccattttaa acacgccacc aatcaacgcc ccgattacgc acaacctggt
    16321 ataaaaggag aaagtcgctt agtcagactt gaacttaaac ttattgccga tgtagggctt
    16381 gtgggctttc caaatgtggg aaaatctact cttataagcg ttgtttcaaa tgcaaaacct
    16441 gaaattgcaa attatgaatt taccaccctt actccaaaac ttggactcgt agatgtagat
    16501 gagtataatt cctttgttat ggctgatatt ccagggatta tcgaaggagc aagtgtgggt
    16561 aaaggcttag gacttgcctt tttaaagcac atagaaagaa cgagcttttt acttttcgtg
    16621 ctagatccta tgaggcaaat gcctttaaaa gaacaattta tagtactaag aaaagaactt
    16681 gaaaaatttt ccaatgaact ttttgggcgt aaatttggca tcatgatttc aaaaagtgat
    16741 agtgttcgtt taggagagga atttgctgag caaattgctt taaacattaa tgagttagac
    16801 aattatctca aagaaataaa taatccacaa agctttttaa tcaaagtctc aagccttgaa
    16861 aaaacaggac ttaaagaact taaattcatg cttttagaag aaattaaaac tttaagaaat
    16921 aacaaataaa aattttaaca atctaggaag tgttttatat taaaaatttc aaacactccc
    16981 tattttttca aaaaataact agtttatatg aaattttggc taaaattata aaaatttttc
    17041 aaggaataag catgaaaaga atagttgtta aagtgggttc tcatgtgatt agcgaagaaa
    17101 acactttaag ttttgagcgt cttaaaaatt tagtcgcatt tttagctaaa ctcatggaaa
    17161 aatatgaagt aattttagta acctcggcgg ctatttcggc aggacacacc aaactagata
    17221 tcgatagaaa aaaccttatt aataaacaag ttttagctgc tattggacaa ccttttttaa
    17281 tcagtgttta taacgagctt ttagccaaat ttaacaaact aggcggacaa attttactta
    17341 caggcaagga ttttgactct agaaaagcta ccaaacacgc aaaaaatgct atcgatatga
    17401 tgataaattt aggaattttg cctattatca atgaaaatga cgctacagct atagaagaaa
    17461 ttgtctttgg tgataatgat agtttaagtg cttatgctac gcattttttt gatgcggatt
    17521 tgcttgtgat tttaagcgat attgatggat tttacgataa aaatcctagt gaatttagtg
    17581 atgcaaagcg tttagaaaaa atcactcata ttaaagaaga atggctacaa gcaaccataa
    17641 aaacaggtag tgagcacgga acaggtggta tagtaaccaa acttaaggca gctaaatttt
    17701 tacttgaaca caataaaaaa atgtttttag caagtggctt tgatttaagt gtggcaaaga
    17761 catttttatt agaagataaa caaataggtg gaactttgtt tgagtgatta atttattaaa
    17821 ttctctttta aaatcaaata agctataatt aaaactttta atttcacaca aagcgaaaaa
    17881 atgaaaaaaa ttatttttat gggcactcca tcttacgcaa cttgtatttt aaaagcacta
    17941 gtagaaaatg aaaattttaa actcgtagca ctttttactc agcctgataa agccgtaggt
    18001 agaaagcaaa ttttaactcc aagtgatact aaggcttttt taagtcaaaa ttatcctagt
    18061 attcctattt ttactccaag ttctttaaaa gataaaaata ttataagaga gattaaggat
    18121 ttaaatcctg attttatcgt tgttgctgcc tatggaaaaa ttttacctaa agccattttg
    18181 gatttagcgc cttgtgtgaa tttgcatgct tctttacttc caaaataccg tggtgccagt
    18241 ccgatccaaa gtgcgatttt aaacaaagat gaaaaaagtg gagtttgcac catgctcatg
    18301 gaagaagggc ttgacacagg tgctatactt gaaagcttag aatgtgatat aaaagataaa
    18361 aattcaagtg aagtttttga acttttagca aatttggccg ctaagctcat cctctctact
    18421 cttttaaatt tcgataaaat cacccctaaa aaacaagagg aaagtctagc aacactttgt
    18481 agaaaaatca aaaaagaaga tgggcttata aatttgcaaa atgcaagaga actttatcaa
    18541 aaatatctag ctttcacccc ttggcctgga gttttcttgg aaaatggact taaattctta
    18601 gaacttgaac ttgtggatga attaaaacaa aatgctaaga tgggtgaaat tttagaatta
    18661 gaaaaagaaa gttttttgct tgcttgcaaa caaggagttt tgcgtattaa aaaacttcaa
    18721 gaaagtggaa aaaaagctct tgatggcagg acttatttaa atggaaaaag gcttaaaagt
    18781 gaagatagtt tgtgttgaaa gtatagactc aactcatctt tttttatgcg agcaaatacg
    18841 caatggaaag attgatgaaa attttgctat ttatgcttta gaacaaacaa atggagttgg
    18901 aagtagggaa aattcttggc aaagctctaa aggaaattta catctttctt tttgtattaa
    18961 agaagaagat ttaccaaaag atttaccttt agcttctgtg agtatttatt ttgcttattt
    19021 acttaaagaa gttttacaag aaaaaggttc taaaatttgg cttaaatggc ctaacgatct
    19081 atatttagat gataaaaaag ctggaggagt tataagtgct aaaatttcaa attttatcat
    19141 aggcggtatg ggtttaaatc ttaaatttgc accccaaaat acagctttat gcgatataga
    19201 aatttcgctt aaagatttag tgagtgagtt tttgcaaaaa gtagaaaaaa aaattttatg
    19261 gaagaatatt tttagcaagt atatgttaga atttgaaaaa tcaagaaaat ttagcgtcca
    19321 tcatgaaggt aaagtttttt cacttgaaaa ttcttttttg tacgaagatg gttcaatttt
    19381 actaggcgat aaaagggtgt atagtttaag atgagcgaaa ttattacaat agcaaatcaa
    19441 aaaggtggag taggaaagac tacaacagca gtaaatttag ccgcttcttt ggctgtggct
    19501 gaaaaaaaag tacttttgat tgatgttgat ccacaagcta atgcgactac agggcttggt
    19561 tttaatcgta ataattatga gtataatatt taccatgttt ttataggaag aaaaaagctt
    19621 tcagatatta ttttaaaaac agaattgcca caacttcatt tagctccttc aaatataggt
    19681 cttgtaggta tagaacaaga gcttgctaaa ggtgaaaata atgagaaaaa aatgttactt
    19741 aaaaatcaaa ttcaagaagt aattgatgag tatgatttta ttattattga ttctccacct
    19801 gctcttggaa gtattactat aaatgctttt gcagcaagtg atagcgtaat tatccctata
    19861 cagtgtgaat tttatgcgct tgagggtgta gctatggttt taaatacaat taaaattatc
    19921 aaaaaaacta ttaattctaa actcagggtt cgtggatttt taccgacaat gtatagctct
    19981 caaaataatc tttctaaaga tgttgtagat gatttgaaac aaaattttaa aaaacaactt
    20041 tttactatta atggaaacga agatgacttt attgtgatcc ctcgcaatgt aaaacttgca
    20101 gaaagtccaa gttttggaaa gcctataatt ctttatgata ttaaatcgcc aggttctgtt
    20161 gcttatcaaa atttggcgta ttctatatta ggataattat aatggggtta aataaagata
    20221 ggggtttaag tagtttaatc agtgatatgg atactgttta tagcaaagaa ttgggttttg
    20281 ataaaaatca aagcactatg atagaaattg atcaaatttc acccaatcca tttcagccaa
    20341 gaaagaattt tgatcaagaa gctttagatg agcttgctaa ttctatcaaa gaatttggac
    20401 ttattcagcc tattattgta tttaaaaaaa ataataaatt tattttaatt gctggggaac
    20461 gtcgcttaag agcagtgaaa gcattaggaa aaaaagaaat tctagctttt attgctgata
    20521 ttgatgagaa taaacttaga gaattggctc ttattgaaaa tatacaaaga gagaatttaa
    20581 accctattga acttgctaat tcttataagg atttgatgca agttcataag attactcaag
    20641 agaatttagc agaacttatt cataagtctc gtactcaaat aacaaatact ttaagacttc
    20701 tgaatttaga tattagaact caagagttga ttgcttctgg aaaaatttct cagggtcatg
    20761 ctaaagtttt ggttggttta gatcaaaaag atgaaaaaat gttggttgat agcataatag
    20821 gtcaaaaact taatgttaga gatactgaaa aaatagttaa aaaaataaaa aataatgaaa
    20881 gcttacctaa tcaagaattt gaagatgaaa taaaaaaatt aaaacaaata ctaaatcgct
    20941 ttggatttga ctgcaaaaat aaaaataatg attttgtaat tcatttagaa aatattgata
    21001 aaattaaaaa attaatcaaa atgcttgaaa agttttaacc aaaatcttag cttttttatg
    21061 gtaaaatagt ccttcaaaaa ttctaaccaa ggagaattat gtttgaagat atgcatcctt
    21121 ccataatgct tgctactata gctatttttt tggctatgat agttatttta aatagtatgc
    21181 tgtataagcc gcttttaaaa tttatggatg aaagaaatga ttctataaaa aatgatgaga
    21241 ataaagtaaa agaaaattct caagaagttt tatgtgtgaa tgatgaatta gaagttattc
    21301 atattaacac tagagaagaa attcaaaaaa tcaaacaaag tgctatagct gctgctaaag
    21361 aagaggcaga gcaaattctt agaagcaaga aagaagaatt agaaagaaaa atggccagct
    21421 tttatgcaga tttagctatt caaaaaaaag agttacaaga acatttaaac atacatttac
    21481 ctgagcttaa gcaagctttg caaaataaca taaagaaaat ttaagaggag agaaatgagt
    21541 aagttattat ttattatatt tttgctacct ttgtatgctt ttggtgcatc aaacggtagt
    21601 ggagaatatg atattattcc aaggactatt aattttctaa tttttgtggg tatattgtat
    21661 tattttgttg caactccatt taaaaatttt tacaaaaacc gtattgtaaa aatttcttct
    21721 aaacttgatg aaattcaaaa aaaactttta gaaagtaaag ctaagaaatt agatacgatg
    21781 aaaaaacttg aagaagctaa ggcaagtgct gctgccgctt taattacagc aaaaaaagaa
    21841 gctgaaattt tagttcaaaa tattaagaaa gagactcaag atgagttaga tttacttcaa
    21901 aaacattttg aggaacaaaa agattatgaa tttagaaaaa tggaaaaaga attagtatca
    21961 aatactttaa atgaaatttt ttctgatcca aatatgacat taaaacagag tgaaataata
    22021 gaacttatga tgaagaaggt atcttaaata tggaaaatat aattgcaaga agatatgcaa
    22081 aagcgatagc ttcaagagct gatataaatg atttttatca gaatttgtgt attttaaatt
    22141 ctgcttttgt tttg
//
LOCUS       DARGEM010000013        22001 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.013, whole genome shotgun sequence.
ACCESSION   DARGEM010000013 DARGEM010000000
VERSION     DARGEM010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22001
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.013"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            42..1850
                     /locus_tag="SFZ78_000404"
     CDS             42..1850
                     /locus_tag="SFZ78_000404"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG8211309.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ILKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            1847..2365
                     /locus_tag="SFZ78_000405"
     CDS             1847..2365
                     /locus_tag="SFZ78_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG8211310.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2404..3495
                     /locus_tag="SFZ78_000406"
     CDS             2404..3495
                     /locus_tag="SFZ78_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8211311.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            3537..6988
                     /locus_tag="SFZ78_000407"
                     /pseudo
     CDS             3537..6988
                     /locus_tag="SFZ78_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            7069..8097
                     /locus_tag="SFZ78_000408"
     CDS             7069..8097
                     /locus_tag="SFZ78_000408"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG8211312.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQDLLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSIDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            8107..8553
                     /locus_tag="SFZ78_000409"
     CDS             8107..8553
                     /locus_tag="SFZ78_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8211313.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            8557..9402
                     /gene="argB"
                     /locus_tag="SFZ78_000410"
     CDS             8557..9402
                     /gene="argB"
                     /locus_tag="SFZ78_000410"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG8211314.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCERLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            9406..10593
                     /locus_tag="SFZ78_000411"
     CDS             9406..10593
                     /locus_tag="SFZ78_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG8211315.1"
                     /translation="MKMDYKEQSHIVPAYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(10613..11242)
                     /locus_tag="SFZ78_000412"
     CDS             complement(10613..11242)
                     /locus_tag="SFZ78_000412"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG8211316.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TMERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            11331..11879
                     /locus_tag="SFZ78_000413"
     CDS             11331..11879
                     /locus_tag="SFZ78_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG8211317.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDKKGKLKDTGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(11848..13221)
                     /locus_tag="SFZ78_000414"
     CDS             complement(11848..13221)
                     /locus_tag="SFZ78_000414"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG8211318.1"
                     /translation="MMTSKTSLTLLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFDIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTIQDYTKEQISKLDENFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(13208..14230)
                     /locus_tag="SFZ78_000415"
     CDS             complement(13208..14230)
                     /locus_tag="SFZ78_000415"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG8211319.1"
                     /translation="MQRKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(14233..14655)
                     /locus_tag="SFZ78_000416"
     CDS             complement(14233..14655)
                     /locus_tag="SFZ78_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8211320.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(14656..15264)
                     /gene="pyrE"
                     /locus_tag="SFZ78_000417"
     CDS             complement(14656..15264)
                     /gene="pyrE"
                     /locus_tag="SFZ78_000417"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG8211321.1"
                     /translation="MNLEQIYKGCGAYLEGHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(15267..15830)
                     /gene="frr"
                     /locus_tag="SFZ78_000418"
     CDS             complement(15267..15830)
                     /gene="frr"
                     /locus_tag="SFZ78_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG8211322.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKSKESELLKV"
     gene            complement(15840..16211)
                     /gene="secG"
                     /locus_tag="SFZ78_000419"
     CDS             complement(15840..16211)
                     /gene="secG"
                     /locus_tag="SFZ78_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG8211323.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(16315..17010)
                     /locus_tag="SFZ78_000420"
     CDS             complement(16315..17010)
                     /locus_tag="SFZ78_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG8211324.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            17171..17806
                     /locus_tag="SFZ78_000421"
     CDS             17171..17806
                     /locus_tag="SFZ78_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG8211325.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            17803..19686
                     /locus_tag="SFZ78_000422"
     CDS             17803..19686
                     /locus_tag="SFZ78_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG8211326.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANMSKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(19709..20680)
                     /locus_tag="SFZ78_000423"
     CDS             complement(19709..20680)
                     /locus_tag="SFZ78_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG8211327.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEMDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(20690..21871)
                     /locus_tag="SFZ78_000424"
     CDS             complement(20690..21871)
                     /locus_tag="SFZ78_000424"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG8211328.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDHILDRERNEVIISSVEH
                     PAVATAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         7640 a         3065 c         3813 g         7483 t
ORIGIN      
        1 taaacactca cagggtaagt gagcgacaaa gggttaaaaa tatggaaaaa gaagttattg
       61 cgtatttgga caatgagaca ataattgact ctcaaagtgt gaaaaataca aatttaaaag
      121 aaatttattt tgataattct aaagaaagtt tagaagtaat ccgtcattct tgtgcgcatt
      181 taatggcaca ggcgattaag agtttgtatc ctgaggctaa atttttcgtt ggtcctgtta
      241 tagaagatgg attttattat gattttcgtg tggaaagtaa gattggcgaa gaagatttag
      301 taaaaattga aaaaaagatg aaagaacttg ctgaagcaaa gattgaaatt ttaaaatatg
      361 aaatcacaaa aagcgaagct ttggctaaat ttcaaaatga tgatttaaaa caagaagttt
      421 tattgcgtat tcctgatgga gctgtaagta tttataaaca aggtgaattt gaagatttgt
      481 gtcgtggtcc tcatgtgcca aatacgaaat ttttacgctt ttttaaactc actcgtgttg
      541 caggagcgta tttgggtggc gatgaaaaaa gagaaatgct tactcgaatt tatggtaccg
      601 cttttgcaga taaggaaagt ttaaaagagt atttaaccat tattgaagaa gctaaaaaac
      661 gcgatcatag aaagcttgga acagagctta agctttttac ttttgatgat gagatcggag
      721 gaggtcttcc tatttggttg agtaacggtg caagacttag atctaaactt gaacatatgc
      781 tttataagat ccatcgttta cgtggttatg agcctgtgcg tgggcctgaa cttttaaaag
      841 cagatgcatg gaaaatcagt gggcattatg caaactataa agaaaatatg tattttacac
      901 aaattgatga acaagaatat ggcattaagc ctatgaactg tgtgggacat attaaaattt
      961 atcaaagtga tgtaagaagt tatcgtgatt tgcctttgaa attttttgaa tacggcgtgg
     1021 tacatcgtca tgaaaaaagt ggcgttttgc atggactttt tagagtgaga gaattcactc
     1081 aagatgatgc acatattttt tgtatgccaa gtcagattaa agagcaggtt ttagaaattt
     1141 tagcttttgt ggataatttg atgaaattat ttgattttag ctatgaaatg gaaatttcaa
     1201 ctaaacctga aaaagccata ggtgatgatg aaatttggga aatagcgact aaggctttaa
     1261 aagaagcttt agatgaacaa ggtttaaaat acggcatcga tgaaggtggc ggggcttttt
     1321 atgggccaaa gattgatatt aaaatcaccg atgctttaaa aagaaagtgg caatgtggaa
     1381 ccatacaagt agattttaac ctgccaagtc gttttaaact tgaatacact gatagtgata
     1441 atgaaaaaaa acaacctgta atgttgcatc gtgcgatttt aggttctttt gaaagattta
     1501 taggaatttt aaccgagcat tgtgcgggtg agtttccgtt ttttatcgca ccaactgcgg
     1561 tgggtatagt gccaataggc gaagcacata ttgcttacgc aaaagaaatt caaaaagaat
     1621 tattagagct taatatcgat agcgaggtgt atgaaaaaaa tgagagctta agtaaaaaaa
     1681 ttcgtatcgc tgaaaagcaa aaattaccta tgattttagt tttaggcgat gatgaggtgg
     1741 caaagcgtag cgttgcttta agagatagaa gagctaaaga acaaaaaaat cttagcttgg
     1801 acgaatttat taaattagtt aaggagaaaa tgagtgaggt acacttttga gtaaagaaaa
     1861 agaagtattg ctcaatgaag aaataagagc ggatgaaatc agatgtgttg gcgatgatgg
     1921 caaagtttat ggtattatca gtagtgatga agctttagaa attgcaaatc gtttaggact
     1981 tgatcttgta atgatagctg cagatgctaa gccacctgtt tgcaagatca tggactatgg
     2041 taaattccgt tatcaacaag agaaaaaaca aaaagaagca aagaaaaaac aaaaagtgat
     2101 tgatataaaa gaaatcaaac tttctgtaaa aattgctcaa aatgatatta attacaaggt
     2161 aaaacatgct ttagaatttt tagaacaagg taagcatgtg agatttcgtg tgttcttaaa
     2221 aggacgtgaa atggcaactc ctgaagcagg tgtagctttg cttgaaaaaa tttggactat
     2281 gatagaaaat gaagctaatc gtgacaaaga gccaaatttt gaaggtcgtt atgtaaatat
     2341 gcttgtaact ccaaaaaaag cttaatccac ttttgtggat aaggctttta aaggttttaa
     2401 attttgaaag aaaatccttc ttttttaaaa gagcaaatta taacttatct tggaaataaa
     2461 agagcacttt taagtttttt aaataagggc tttaaggtag ctaaaaaaga acttggtaaa
     2521 gataaattta gtttttgtga tatatttagt ggctcaggtg ttgtaagtcg ttttgcaaaa
     2581 gcacactcaa attatatttt agccaatgat ttagaagatt attcaaaact catcaatgag
     2641 tgttatcttg ctaataaaga caaagattta cttcaaaata taaaaaagta ttataaaaat
     2701 ttaatccaaa atttagattt tcaaaaaggt tttatcagtg agctttatgc tccaaaagat
     2761 gatgatgata ttaaaaaaaa tgaaagggtt ttttatactt ttaaaaatgc tttatatctt
     2821 gatactataa ggcaaaaaat cgaaaatgaa attccaaaag aattgaggca tttctttata
     2881 gctcctttga tttatgaagc cagtgttcat tcaaatacta gcggagtttt taaaggtttt
     2941 tataagggta aggatggcat cggaaaattt ggtggcgaag gacaaaatgc acttaaacgc
     3001 attaaaggag aaatagagct taaaatgcct attttttcaa atttttcttg tgaatttgaa
     3061 gtgatgcaaa aggatgcaaa catgcttgca aaagaacttg atttttttga tgtagtgtat
     3121 cttgaccccc cttataatca gcacccttat agttctaatt attttatgct aaatttaatt
     3181 gcaaattata aaaaacctga agaaatttct aaaatcagtg gcattccaaa ggattggaac
     3241 cgcagtactt ttaataagtc aaaatttgcc caagatgctt tatttgaact tattaatgat
     3301 ttaaaagcaa gagtgatttt actttcttat aattgtgaag gttttgtaaa aaaagaaatt
     3361 tttttaaagc gcttaagcac tcttggaaaa tgccggattt tagagcaaaa atataatact
     3421 tttagagctt ctcgcaatct taaaaatcgc aacatccatc ttcatgagca actttatatt
     3481 ttagttaaaa attagttttt cgtgctaaaa ttgcacttaa aaatgaggag ggatttatga
     3541 aactaaaatt atctttttgt acattaatgg catttggttt ttctaactat ctttttgctt
     3601 cagctattga tccaaagtta ttttcaagaa tatcttgatt ttgccagtaa taaaggcaaa
     3661 tttcaagtag gtcaaattgg cttttaaatt ttagcaaaaa tcctagtcaa aatatctctt
     3721 ttaatgtgtc tatgattgat ttttctactt caaatcgtgg aggaaaattc caaggagaat
     3781 ttaccaatat aggacaatct tatatagtca gcgcttctca tatgagtaca agtttaaata
     3841 ctgggaagta aataaaggct atgtgaaaca aggtagtgtt ttacactttg gaggggtagc
     3901 aaatagaatc gtaagctcaa gtgataattt tacttacaaa aaagaaaatg tggattttgc
     3961 tgttttaaaa atgagtaaga ttagtctcaa taaaagtgca aatttgagta aagatttaaa
     4021 tcttattgaa aaaaattctg gcgatggtgg agattttatg aatacaagga tccattttgg
     4081 gatagttgtc aaagtggaaa atgtgattat tcaaaaggta aaggcaagct ttttgatagt
     4141 tcgcgttatg agtactttgc aagagaggga agtggtattg tagctttagg ttttgaagat
     4201 acaaataaag tacccattaa gatttttgat tctaatgaaa tcaatttagg aggttttgtc
     4261 agtttaactc ctaaaaatac tgaagataag cgttttaagt tgcaatttct taattatacc
     4321 aatgataaaa gaaattcttt tacaagttct tcaatatcct gggattctgg aagtggagtt
     4381 tatgtttatg ataagatgga taaaaatggt atttagtggg tgtggtaagt acgagtaatt
     4441 gtaatgtcca ttttactatg gatatacttg tttacaggtt gattatgctt tgatcaatca
     4501 agtaaagatc aatgaatttt aaaatgctca taaagtagcc ataggatctg gaacttatac
     4561 acttagtagc gatggtttgg tgaaagatgg taaaaaaata gaaaatgtaa gtttgatttc
     4621 taagactaat gtgggttatg taagctataa aaattctttt gatgataaaa ataattgtga
     4681 taagagaatt gaagaaatgc aaaatagcaa ggatttgtat ttttctcaaa atggaagtat
     4741 aaatttaaat agcgatgtgg atttaggcgc tagtgtttta aatttgataa aaatttaaat
     4801 tggcaaataa caggcgataa atggcttata catggcggaa tttatgctga taaggttcaa
     4861 ggtagaatat aatgttaaaa ccaaaaaaga tgattttctt tataaaatgg gtgaaggaga
     4921 gcttgttgtc aaaagtcaaa gtgtggatac aggacttaga atgggtgagg accaaggtaa
     4981 gtcttgaggg tgaaggttta agttttggcg aaatttatat gaatggcaga actttggatt
     5041 tatcaggctt aacattaaat tttgatcaaa ttaaaactga ctctaataat gtttttatca
     5101 caagttctta atcaggaata catttaaatt tagaaaacaa gcaagattat ctttatcatg
     5161 gcaatatctt ttcagatgaa gctgtaacaa tgagtgccaa tacagacaaa gctttgattt
     5221 ttgatggtaa tatttacaat aaagaaggtg tttttaggac agaaaatgcc aagttaaatt
     5281 ttcaaggaca tgctagaata cacgcttatg taagcaaaga acaagctaaa aaacttcaag
     5341 aacatggttt aagtgcttta actaagcctg taagttttac acaagaagat tgggtttttg
     5401 ttttaaaaga gcttaattta gaaaaaaagc gagttttatt tagggcgtta atgtaagctt
     5461 aaaagtagaa aaccttaatg ctaaaaattc caaaatagag cttggaagta aaaatttgcg
     5521 gatcgatgaa aaagatgggg aaaatattat taataagact gatgattatt cttatggaga
     5581 tgttgtataa acaggagttg gcaaagaaat ggcttttgag caaaagcttt aaaataccca
     5641 aaatgctaag atagaaaagg tttattttag tgtaaattta aatcttgatc attctgatgt
     5701 tactttgcaa aacacatttt ttagtggtaa tatcaaaggt atcaatgata cgcaaaaaaa
     5761 tcttgcgatt aaagattctt tgtttgagtc tcatatacaa atgagcaatc ttcaagtaga
     5821 aaaaagtgct atttatagga aagttgatgc aaaaaaaatt aagtgcaaat aatacaatat
     5881 ttaaaatcaa tgtggatttt gaaaattcta aagcagatta tattaattct aaggaaagca
     5941 cacaaggagt aaataatact ttagtattaa ttttttctta ataatcctag taaaaagcgg
     6001 gttaaatatc ttgctagctc atttaaaaga tgaaaataaa catttaacaa aggaattttt
     6061 tactatacca aatgtgagca aggttttagt acgtataccc caaatgttgt tttttctcat
     6121 aatgaggaaa attttgccca gagtggaatt tagaaaaaat tgattctaag attaaagatg
     6181 aatatttttt tactaatgat aatactcaag ctattgtaaa aactaaatct atacttgctc
     6241 aagctatttt aggctccatg ataggagtgg aataatatgc ataaaagaat gggggaatta
     6301 cgcaataatc cttatgaaag tggtgtatgg ttaagaactt ttggatgggg tacgagtgat
     6361 gagtataata gtggaaaata ctttgaaatt caaagcggac atgataaatt aaacgagtat
     6421 tcgaatttcg agctttacag tggagtaggg tttttatagt gattttgttt tagatatatt
     6481 tattatcaaa atgaaataaa tgcaaatttt attccaggaa atcaaggtag attagatgat
     6541 aatgatggtt cgcataatat tatcttaagt gctgagttag gttatagaaa agcttatgat
     6601 aaattttatc ttgagccgat ttggaattta tcagtggtta tgtaggagct atggatctaa
     6661 aaggagatat tgctagttta aaacgatttt cttatattcc tttagtcgta aaaacagcat
     6721 tttttatagg aagtcaaaat taaaatttaa attttagaac aggacttggt ttgtatgtgg
     6781 atccgattaa agcaggagat caaatcttgg aggatcaagc aagtcagaga agatatgaag
     6841 gaaaaaagat caaagaatgt ttataaattt aggaaatgat tataagctta acgataaaac
     6901 acgctttagt tttgaatttg aaaagacatt ttttggcgat ttaaatgtag attggagtgc
     6961 aaatgctaat ttaagatata gtttttaaat aaaaaataat ttaaaaattg tatttttatt
     7021 ttaagctttt ttgtttataa tacttgcttt tacatttaaa ggataaagat gaaaataaaa
     7081 gttgggattt taggagcgag tggttatgca ggcaatgagc ttgtacgcat tttgcttaat
     7141 catcccaaag ttgaaatttc ttatttaggt tcgagttcta gcgtggggca aaattatcaa
     7201 gatctttatc ctaatacccc tttaaattta tgttttgaaa acaaaaattt agatgaactt
     7261 gagcttgatc ttttgttttt ggctactccg catgaattta gtgctaagct tttaaatgag
     7321 aatttattaa aaaagatgaa aatcattgat ttaagtgcgg attttcgtct taaaaatcct
     7381 aaagattacg agctttggta taaattcact catcctaatc aagatctttt gcaaaatgca
     7441 gtttatggac tttgcgagct ttataaagaa gagataaaaa aagcaagttt ggtggcaaat
     7501 ccaggttgct ataccacctg ttctatctta agtctttatc cgctttttaa agaaaagatc
     7561 attgatttta actcagttat cattgatgca aaaagtggag taagtggagc aggaagaagt
     7621 gctaaggtgg aaaatctttt ttgtgaagtt aatgaaaata tcaaagctta tggtttagct
     7681 tcgcaccgcc atactcctga aattgaagag catttaagct atgcggccaa agagaaaatc
     7741 actctacaat ttacccctca tcttgtgcct atgcaaagag gaattttaat cagtgcttat
     7801 gcaaatttaa aagaggactt gcaagaacaa gatatacgcg atatttatac aaaatactat
     7861 caaaacaata aattcataag gcttttaccg ccgcagtcgc ttccgcagac tcggtgggtt
     7921 aaatcaagca attttgcgga tataaatttt agtatagatc aacgcacaaa gcgtgttatt
     7981 gtgcttggtg ctattgataa tttaatcaaa ggtgcagcag gacaagctgt tcaaaatatg
     8041 aatttaatgt ttgattttga tgaagatgaa ggacttaaat tctttgcaaa tttgtaaagg
     8101 ataaaaatgt taatacgagc tatgcaaaaa agcgattatg aagccgttta taagctttgg
     8161 tgtgagataa aaggctttgg gataagaagc attgatgata gcaaagaaaa tatagaaaat
     8221 tttttagata gaaacccaaa tcttagcgtt gtagcagtga ttgatgaaga aattgtagga
     8281 agcatacttt gcgggcatga tggacgcata ggaggatttt atcatgtatg tgtacataaa
     8341 gatcatagaa aaaagggtat agcacacgag atgactaaat tttgtcttga ggctttaaaa
     8401 gctcaaaaga ttaataaaat cgccttaatc gcttttaaaa acaatgattt aggcaatgag
     8461 ttttggaaac attatggttt tactttaaga gaggatgcga attattacga tctttcttta
     8521 aatgagtata atcaaaccag ctttaatgct taaggaatga tcatgcaaaa atatttagaa
     8581 aaagccaatg tcttaatcga agctttgcct tatatacgca aatttaattc caagattata
     8641 cttataaaat acggcggatc agctatggaa aatgaagagc taaagcattg tgtgatgcaa
     8701 gatatagctc ttttaaaact tgtgggttta aagcctatca ttgtacatgg tggaggaaaa
     8761 gatatttctg ctatgtgtga aagattgggc gtaaagagtg agtttaaaaa cggccttagg
     8821 gttagtgata aagccactac tgaagtagcc agtatggttt taaatcatat caataaaaat
     8881 ttagtccata gtttgcaaaa tttaggagtt aaagccatag ggctttgtgg taaagatggc
     8941 gcgcttttag aatgtgtgaa aaaagatgaa aatttagctt ttgttggcac gatacaaaag
     9001 gtaaattcga aaattttaga agagctttta gaaaaggatt ttttacctat cattgctcct
     9061 attggcatgg atgaggattt taatacttat aatatcaacg ctgatgacgc agcttgtgcg
     9121 atcgccaagg ctttaagggc tgaaaaactt gcttttttaa ccgatactgc tggactttat
     9181 gaggatttta gtgataaaaa ttctttgatt tctaaaatta gccttgaaca agctaaaatt
     9241 ttagctccta aaatagaagg tggtatgcat gtaaaattaa aatcctgtat tgatgcttgt
     9301 gaaaatggag tcaaaaaggt gcatatttta gatggacgcg tgaagcattc tttattgctt
     9361 gagtttttta ctgatgaagg tataggcact ttggtgggtt aaaggatgaa aatggattat
     9421 aaagaacaaa gtcatattgt ccctgcttat aagcgttttg atatagtttt agaaaaaggg
     9481 cagggggttt atctttttga tgataaggct aaaaaatatc ttgatttttc aagtggtata
     9541 ggtgtttgtg ctttaggata taatcatgct aaatttaatg ctaaaatcaa agctcaagtg
     9601 gataaacttt tacatactag caatttatat tataatgaaa acatagccgc tgcagctaaa
     9661 aatttagcca aagctagtgc tttagagcgt gtttttttta caaattctgg tacagaaagt
     9721 atagaaggag cgatgaaaac agctagaaaa tacgccttta acaaaggtat taagggtgga
     9781 caatttatcg cttttaagca ttcttttcat gggcgtactt taggggcttt atcgcttact
     9841 gctaatgaaa aatatcaaaa gccttttaaa cctttaattt caggggttaa atttgcaaaa
     9901 tataatgata tttcaagcgt tgaaaaactg gtgaatgaaa aaacttgtgc cattatctta
     9961 gaaagcgtgc aaggagaagg tgggataaat cctgcaaata aagattttta caaagcctta
    10021 agaaagcttt gcgatgaaaa agatatatta ttaatcgctg atgaaattca atgtggcatg
    10081 ggtagaagtg gaaaattttt tgcctatgag cacgcacaaa ttttgcctga tatcatgact
    10141 tcagctaagg ccttaggttg tgggcttagt gtgggtgctt ttgtaataaa tcaaaaggta
    10201 gcaagcaatt ctttagaagc aggcgatcat ggtagtactt atggtggaaa tcctttagtt
    10261 tgtgcaggag tgaatgcagt ttttgaaatt tttaaagaag aaaaaatttt agaaaatgtc
    10321 aataaactca cgccttattt agagcaaagt ttagatgagt tgataaatga atttgatttt
    10381 tgtaaaaaac gcaaaggctt agggtttatg caagggctga gtcttgataa aaatgtaaaa
    10441 gtagctaagg tcattcaaaa atgccaagaa aatgcacttt tactgataag ttgcggggag
    10501 aatgatttga gatttttacc tcctttgatt ttgcaaaaag aacatattga tgaaatgagt
    10561 gaaaagttaa gaaaggctct aaagagtttt tgataaattt tgtaaaaaaa gtttattctt
    10621 tcccatctac tataggcaca aataaacatt cttctaaaat ttctttttgt aaatttgtgc
    10681 cattttttct aaggcgtgtg atgaattgtt tgccattgtg taaaatagga gcaactaaaa
    10741 taccatcatc gcttaattga tcgagtaaaa tttcaggaat ttgtgtcgca taagcagaaa
    10801 ataaaatcct atcataagga gcataatttt tccagccatt ttgtccatca tcaaatttta
    10861 cattgatatt aaaaagttct aattctctga aagtttgagc ggcttttttg gctaaatttt
    10921 ctatgcgttc catggtaaaa acacgcctta tgactttgct taaaatcgca gcttgatagc
    10981 cacttccaca acctatctct aaaatactat cagcattttt aaaatctaaa gccatagtca
    11041 ttttagctac agttaaaggt gaactaatcc attgagaatt tgctaaaggc aaagcatcaa
    11101 ggcgataagc atgggctttt aaaggagaaa aaatttcacg cggaatttga caaaaagcat
    11161 taaaaagctc ttcattgata aaaacttttt gtgcaatttc ttcagccata ttttgacatc
    11221 ttttttgttc aaatgcgttc attacttctc ctataaattt aaataaaaat tgtaactaaa
    11281 aaagttgaaa tagagttaaa cttagctata cttaaataaa aaggaaaaaa atgcttataa
    11341 aatttaaaaa tcatagtccc aaactaggtc aaaatgtttt tgttgcagag ggcgctaaaa
    11401 tcataggaga aatagaaata ggagatgaaa gtagtatttg gtttaattgt gttttaagag
    11461 ccgatgttaa ttttataaaa attggcaaaa gaaccaatat tcaagatctt agcacagttc
    11521 atgtttggca tagggaattt gataaaaaag gaaagttaaa agatactggt tttcctacga
    11581 taataggaga tgatgtaact ataggacata attgcgttat ccatgcttgt gtgataaaaa
    11641 atcgtgtttt aatcggaatg aatgctgtta tcatggatag tgctttgata gaagaagata
    11701 gcatagtggg tgctggaagc gttgtaacaa agggtaaaaa atttccgcca cgctctttga
    11761 tacttggaaa tcctgcaaaa tttgtgcgtg aattaaataa tgaagaaata aactttctaa
    11821 aacaatccgc tttaaattat gtggatttta aaaacgagtt tttaaaagat cttcagtgat
    11881 attttgaagt ttaggcgaga gttttacttc aaatttcaca aaacgatcaa gatctaaaaa
    11941 attctcatcg agttttgaaa tttgctcttt tgtataatct tgaatagtat ttaaagatga
    12001 ctttttaaga agtctttttt ctttgtagac taattttaaa agttctttgc gttctaaatt
    12061 ttcatcttga tttgggtttt cgtcaaaaac ataaagctca tcaaaaagga ttttttgcgt
    12121 gtttttatca taaaccctaa aaagcttttt aaaatgaggt agggttgatt tttcgttatt
    12181 ttcgctaatt ttgattttag gttttatgcc ttgatcttct aaggctgcga gtttataaac
    12241 gcaactaaaa atagggtcac ttgaagcagt gatcaatctt tcgcctacac caaagatatc
    12301 aataggtgca ttttgttctt taagtttttt aatgctccat tcatcaaggg cgttagaaac
    12361 tatgatttta catttttgaa gtcctgcttg atcaagttct tgtctgattt tcaaactcaa
    12421 ctcaagtaaa tttccagaat ctattctcac gccgccttct tgaatatcaa attctttaaa
    12481 aactttaatc gcatttttaa gtccgctatt tagacaatca taagtatcga tcaaaaaaac
    12541 aggatttttt ggataaattt tcacataagc tttaaaagct tcaagttcat tttcaaacat
    12601 ttgcacccaa gaatgtgcca tagttccatt gatagggata ttataaattt ttcctgctaa
    12661 agtacaagca cttcctatgc aacctcctat aaaagctgct cttgctcctt ttaaggctgc
    12721 ttcacttcct tgtgctctgc gtgaaccaaa ttctaaaatt ttactgtctt tagctgcacg
    12781 cacgatacga ttggttttgg tagcaataag gctttggtgg tttaaactta aaagtaaaaa
    12841 agtttctaaa agctgtgctt ctatggttgt agctttaata catagcaaag gttcgtttgg
    12901 aaaaatcact tctccttcac gcatagcata aatttcaccc ttaaatttaa agttagctaa
    12961 aaaatctaaa aattctgtat caaaaatacc ttgttttctt aaaaattcta tatcttctgc
    13021 atcaaaactc aaattttcaa caaagtctaa aatatcttca agacctgcaa aaatagcaaa
    13081 agatcctgaa tctggaattt ttctaaaaaa tatatcaaaa taacaaattt gatctttttt
    13141 attgtttttg aaatagcctt gagacattgt aaattcataa aaatcacaaa gcaaggttaa
    13201 agaagtttta gaagtcatca aagcttatac tacccttaga ataattcgtt actttacttt
    13261 caaagaaatt gctcttttga tcgttaaatt ttgaaaaatc atctacccat ttaataggat
    13321 gttttgcatt gtataactta tctaaattga tcgcgcttaa tctttgatct acaagataat
    13381 ggatatattc ttctatgata tcatcagtaa agcccatgat ttgattttga gtgatgtatt
    13441 taccccattt gatctcaaga tctccagctt ttttaaacat atcataaatt ttattgatat
    13501 tttcatcatg gaataaatca ggtctttctt tgcgtactga attgatcata ttttgaaata
    13561 ataaaagatg tgtgatttca tctctttgga taaagcggat catttgtgct gaacctagca
    13621 tttttcctgc acgtgcaagt gcgtaaatgg cagtaaaacc actataaaaa tatactcctt
    13681 ctaaaatttg atttgccacc atagccaaaa gaagtttatt atcatctaca tcgcctgcta
    13741 attcttcata aatgcttgaa ataaagtcat ttttttcacg caaagtttca tcatgctttt
    13801 ccatttcata aatcaaatct gtattatcgc aaatcgcttc taccataaca gcgtaagatt
    13861 ttgaatggtt tgcctcttca taagcttggc gtgccaaaac cgcattgatt tcaggagctg
    13921 tgatgtaagg gttgatatta tctgctaaat tattggtttg aaaactatcc atagaaataa
    13981 gctgactcca aaccaaatca tacattcttt tttcacctac agttaaatta cagcgataat
    14041 caagtgcatc tttagttgta tccacttctt ttggaaacca agtatttgcc tccattaaat
    14101 cccaaagttt taaagcccag gtatattttg ccttagtgaa atttaaaatt ccatgtgggt
    14161 taccatcaaa aattttacga tctcctaggg tttcgtttga acttggattg taaattcttt
    14221 ttctttgcat ttttaacctt tctttatgct tttagtagct atacaacttt gagttaaaat
    14281 atcgtgtaaa tttaaacgat cttttcttac aaaactgaca aataaaccaa agagtaagcc
    14341 aaaacttata ataaatatca catatcttag taaaattcta agaaaactta gtttctttcc
    14401 cgtttttata tcaataagat ataaatcata tgctttaaga cctgggcttt gtgccttttt
    14461 tgttaaaaaa atagcttgaa tcaaaccaaa taaaaaagta cataaagttg tgataaaatg
    14521 gttgtttaaa aaagcttctt tagagcctaa tagaaaataa aataaataca aaataggaac
    14581 ataaataaga aaaatatcta taagcaaagc tctaaatctt agccatctag agctaatttt
    14641 tgctttagtt ttcatttaat ttccacggct tcctggtttt atagctttac tccctttttt
    14701 acaaagtgga caatttgttt catcataaat ttcaaattca aaatttccta gagtaaagag
    14761 tggtaaattt tcaggtaatt tcgcattatc ttttcttgga gattttaaat tttctactgc
    14821 acaaaaacca cgatttgcca atgctgcaaa acctacaaca atgccaccta aactttcaat
    14881 gatttttgca ctctctaaag cactaccacc tgtagtaatg atatcttcac aaattataaa
    14941 tttttcaccc tttttcacct caaaaccacg tcttaaagtc atttctttat ttactctttc
    15001 agtgaagata aaacgtttac tacaagctct cgcaagctca taacctgcta aaattccacc
    15061 taaagcagga gaacaaatgc tatcaaattc tatcttatag cttgcaataa tctttgcaag
    15121 ttcatcacaa agttttgctg ctaattttgg attctctaaa acttttgcac tttgaagata
    15181 aaattgcgaa tgtttacctg aacttagtaa aaaatgccct tctaaataag caccacaacc
    15241 tttataaatt tgctctaaat tcatcgttaa acctttaaaa gttcactttc tttacttttt
    15301 acactctcat caatttttgt tgtataggtg tcggtaagtt tttgcacttc atcataagct
    15361 ttttttgctt catcttcgct tattgcctta tctttttcta gttttttaac tgcatcgttg
    15421 gcatctttgc gtatatttct tatagaaact tttgcctttt cacccatagc tttagcttgt
    15481 tttacatttt cttctctttg ctctctagtc atcggaggga aaaataattt tacactttcg
    15541 ccgtcattgt ttggatttac accgatattt gcagctgcaa tagcgctttc tatggttttt
    15601 agtaaaggtt tttcccaagg agtgatgcta atagttgaag catcacttgc taaaacagtt
    15661 gctacttgat ttaaaggagt ttgagttcca taataatcca ctgtaatatg atctaaaata
    15721 tgggtattaa cttttccagt tcttaaagtg gtgaagtctt tttttaaggc ttctaaagat
    15781 ttttcacttt gggttttttg tttgttaaaa atttcattta gcattatcat ttcctttgat
    15841 tatttacttg aattaacatc gcttggaagt tgtggtgcac ttggagcgat agaatttgtg
    15901 tttggggtag caggcacaat aggagcactt ggaatagtag tattgttgtt ttctacttta
    15961 attttctctg ctagagagtc tttgctagct ttattgtata aataaccaag accaatagta
    16021 tttgcaataa gtaaaattcc cataacaaag gtaaattttg ccaaaaatcc agctggtcct
    16081 ttggcgccaa ataaactttc attgcttcca ctataagctc caagtcctat acttgaactt
    16141 ttttgaagta aaactgctat acaaataact acaacgatga taaattgtaa aatgattaaa
    16201 agagtgatca ttgaaaattc ctaaaagtta atttttaaat gattatttta gctaaataaa
    16261 acttgaaaag ttttgaaact tgaaaagttt ttgtgagaaa aatcccacaa aaatttatct
    16321 gctattgaag cttcttaaga tattaagtaa agatacgaaa agattaacaa aatcaagata
    16381 aagtgctact gcaccttcga ttggagtttc ataatttccg cggataatat tttgcgtatc
    16441 ataaagaatg taaaatgaaa ataatattgc agctactgct gaaatagcta gattaactat
    16501 actgctttgg aagaaaaggt ttagtaaaga tgctgctaca ataacgatta atactataaa
    16561 taaagcttta cccataacag taaaatcttt ttttgtattc atagcaaata cactaagtcc
    16621 tgcaaaagca actgttgtta aagcaaaagc ttgagcgatg ataattcctc cagctggtag
    16681 agctaacact gaaataagca aaggtgtaag cgttaaacct gagcagaaag taaaaccaaa
    16741 aagcaaaaca agatttaatg gagcctctct ttttttccat tgcaaagcaa ataaaagtcc
    16801 gatttcaaca gcaaaaagga tccaaaaagt tacttgtgat tgtataaaaa atgatgctaa
    16861 agcaaaaatt cctacatacg cacctactgt tgcagctaat aatgaagcag caaaaagttg
    16921 ataagtttgt ttaataaaaa tacttaattc gcttgagcgt gtattttcaa attcttttga
    16981 tcttgagtag tctctatcat aaagactcat aaaattctcc ttgcaaaatt gttagatttt
    17041 ttaaaatctt gagcgaaatc taacatatta gactaaataa aaagttaatt tatataatat
    17101 ctttatgatt aaatgaaatc tttgctgaaa ttttgttata atttcaagat tttagtttca
    17161 ggttggtttt atggaaaatc ttattagtgg tgcgattaag tttatgcaag aagactttaa
    17221 ggagcatgaa gaactttttg aaagtctaaa aaataagcaa aatccccata ctctttttat
    17281 aggttgttct gattctagag taattccaaa tttgatcacc aatacgggtc caggtgagct
    17341 ttttgtaata cgaaatattg caaatatagt tccaccttat cgcattgggg aagattactt
    17401 agcgacaact tcagcaatag agtatgcttt aaattcattg catattaaaa atatcgtcgt
    17461 ttgtggccat agtaattgtg gaggttgcaa tgctctttat tattctgatg aagagttaaa
    17521 taaaattcct aatgtgaaaa aatggcttac tatgttagat ccgataaaaa aagatgtaat
    17581 gatttttgca agagacgatt tggctatgcg ttcatggctt acagaaaaat taaatttagt
    17641 aaattctttg caaaatatac ttacttatcc aggcgtgcaa gaagctttag atgaaggaaa
    17701 aatagaagta catgcttggt attatattat agagacaggt gaaatttatg agtatgattt
    17761 taaagcaaaa atttttactt taatacagga taggaaagtt caatgaaaaa aattattttt
    17821 agtttatgtt tttttatttt ataccttgga gcacaagaat ttaaatttat tgatgcaaat
    17881 atgagtaaag aggatgaagg aatttatgct ttagttgaaa aatatgttga tcttaacaat
    17941 caaattaaag aatttaagaa aaacaatgat gaaaattcaa gcacttttaa tggtatttta
    18001 agtgaatttg aaaaagacaa aaagactatt ttagcaaaaa tacccgatat gatagtagga
    18061 caaaagatta atgaagaggc agtggctaga tttttaaaag caaaagaaaa attactagat
    18121 gttcaaaaaa agaatattaa taagccttat atttatacag atgccactct taatctagtt
    18181 tattttaata ttgtggaaag tttttattct tctttgtttg aagtggaaaa actttttaaa
    18241 aatacagcaa gcagtgaaga tttgattgct actgttgata aggcaatgga aaatttacaa
    18301 aattcttcta atgttaattt agatagtttt aaaagcaaaa ttacaaattc agaagaatta
    18361 gaaaaaatta ccctaaaaga aagatatatc agtaatgctg tagattctta ttctgaaatt
    18421 cttaagtatt tacgctcaaa tgcagatttg cttgaaagta attatatttt ttcattactc
    18481 gagcttcaag tttggataga tcgtataaat gaggcaattg gggtaagttt tgttaatatc
    18541 ggaaaaatag taatttctgc tttggtttta gtatttttta tatctttaag acgttttttt
    18601 gcaaatatag tatatttttt ccttgttcag tttttttata gaaataaaaa tgatgtagat
    18661 gatattaaag tcatttttat tgagaatatt aaaaaacccg taggcttctt gttgattgtc
    18721 tatgctattt ctctttgtct tactatagca acttatcctg cacctttgag tgtaaattta
    18781 agtaattttt ttcatatagt ttatgcagtt ttaattgcat ggcttatttt aagaatgctt
    18841 gatggttatg gcgtggtatt ggtttctaaa cttgctcaaa aaagtggaaa aaaagaagtt
    18901 gtaaatttaa ttattaaaat tttatatttt gtcattatta ttatagcttt attatatatt
    18961 cttgctcaac ttggttttaa tatttcggct attattgcat ctttgggaat tggtggttta
    19021 gctgttgctt tagcggcgaa agatatcatt gcaaatttct ttgcttctat actcttactt
    19081 tttgataata gctttaatca aggagattgg gtagaggttt caggcataga aggaaccgtg
    19141 gttgaaacag gacttagaaa aactactatt agaacttttg ataattgtct tgtattttta
    19201 ccaaattcaa ctattatggg agctaatatc aaaaattgga gcaaaagacg catgggtcgc
    19261 catgttagaa tgtatttggg tgttggttat gatgctactc ctgaaaaact agaacaatgt
    19321 gtaaaagatc taagagaatt tttgcataca agtgatttag tagctcacga tgaggatagc
    19381 gcattaaaat atggcgatca tacaacaaaa tatcgtcaaa atcttgtatc tattaatgat
    19441 ttagaaggct ataaaaatgc ttgttatgtg gctttaagtg aatttgcaga tagtagtatt
    19501 aatatagagc tttattttta tatcaaagaa ataggtggaa aagattttag agaagctaga
    19561 caaagtttaa tgcttgagtt tatgcgtata attgaaaaaa atggtttaac ctttgctttc
    19621 ccaagtcgta gtatttatat agaaaattta ccaccccttg atttgcaagc aaaagctata
    19681 aaatagcaag attttatctt gctatttttt aaaccggcat aacgcgtata tttgggctta
    19741 attcttcttg taaaatcgtt tcaatagcat aaagtgttgc accacttcca ctagaacaac
    19801 cactacaagc accaagataa cgaatataaa catcaattgc tgcaccttca gccttttgta
    19861 tgtcaatcac ttctaaatcc cctccatcat tatgaagcat agggcgaatt tcagcatcta
    19921 aaacactttc aactgctttt aattgtccta ctacagtcat ttcatcaaaa gccacatcac
    19981 ttttcattgt atttttgagt ttttctctat ccatctcagc tctagtttca gctaaaatat
    20041 ctacaaggta ataatctctt ttttcatgtc cgcctggttt gatacaggat ttgcaaaaag
    20101 cacccgcttt agtatattgt gtgatttctt ctacgctatg caaatcatta agtttaatca
    20161 cctctttaat agttccaaga cttaccctag cacactcgca aactataatc tgatcttcaa
    20221 aatcttcagg acttatgcct ttataatgcg ctgctgcttg tttgattaca tcataagcca
    20281 taaccgaaca gtgcattttt tgaggtggaa cagctggagt ttctggatta tcacgcatag
    20341 caaattccac atctaaattt gtgattttta ctgcttcatc tacagttttt cctatacaaa
    20401 gatccaccat agtatcacta cttgctatag ctgtaccaca accaaaactt ttaaattttg
    20461 catcgataat tttatcagtt ttttcatcta caagccaaaa aagtcttact gcatcgccgc
    20521 aactttctgc gccaaaatca gctacgatca attttgcatt gcgtgcttta gcatcttctt
    20581 cactaaattc tcccatatgt tgaggattat tcattctatc ttgaactttt tgtgaatact
    20641 catcccaaat ggatccacca attaaactat tttttcccat ttttcatcct tatttgtaat
    20701 tatttggatt ataagcataa gtacaagaaa ttgctcttaa tctctgtgtt gcatttttaa
    20761 tttgttttgc tgcataatca atttcttctt cagtgttaaa acgtgacaaa gaaagcctta
    20821 aagctgtatg tgctaaatca tgttccgcac cgatagcttc cataatagga ttgctttcta
    20881 aagcttcact tgcacaggct gagcccgtac ttgcagctat accattttta tttaaatccc
    20941 aaagcattgc ttcgccttca actcctttaa tacttgctaa gattgtatta ggcacacggt
    21001 gttctctttt tccaaccact gttgtatcag gcaaggctaa aatttgatct tctagtttat
    21061 ctcttaaacg gcgtatatga gaatcttcaa aatcaagcat agtatttgca atacgcaaag
    21121 cctcgcccat agccactata taaggcacat ttaaagtccc gcttctacga ccacccatgt
    21181 gttctccacc gtgtaaaagt ggagtaagct taagtccttt ttttataaaa agtccaccca
    21241 caccctttgg tccatgaaat ttatgtgccg aaaatgaagc aaaatcaact cctacttgag
    21301 ttaaattaac ctttatttta cctactgctt gagtagcatc tgtatgaaaa agagcaccaa
    21361 attcatgcgc aagttctgcc atcgctttaa tatcaaaaat catacctgtt tcattatttg
    21421 cccacataac acttacaagt gctgttttat cgctaatcac tttacgcaaa tcttctacag
    21481 tagaaactcc ttcttcgttt acaggaagtt ctatgacttt tactccaaga ctttttaaaa
    21541 aataagcagc agtagcaaca gcagggtgtt ctacactaga aataatcact tcattgcgct
    21601 ctctatctaa aatatgatca aaatacacac ccttaagcac ccagttaatg ctttctgtcg
    21661 cacaggaggt tacaattatg tcatctaggt catttgctcc aagtcctgca taaagtttat
    21721 ccaaagcttc tcttaaggca ggatgtgttg cgctaccata ttgatgaagg ctatttggat
    21781 ttccatacat atcctttaaa aaaggtagca tcaactcata agcattagga tcaagcattg
    21841 tcgttgcgtt gttatctaaa tatactttca ctttaaaatc cttaatttat ccttaatttt
    21901 aattaggata ttttttatct ttatttgaaa atggataata acaaaaattt ataaaaatta
    21961 ggttaaaaat tataacaaaa ataaaatgct aaagtaaaat t
//
LOCUS       DARGEM010000014        21598 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.014, whole genome shotgun sequence.
ACCESSION   DARGEM010000014 DARGEM010000000
VERSION     DARGEM010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.014"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..897)
                     /locus_tag="SFZ78_000425"
     CDS             complement(<1..897)
                     /locus_tag="SFZ78_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEG8211329.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQ"
     gene            1051..2427
                     /locus_tag="SFZ78_000426"
     CDS             1051..2427
                     /locus_tag="SFZ78_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG8211330.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            2490..3092
                     /locus_tag="SFZ78_000427"
     CDS             2490..3092
                     /locus_tag="SFZ78_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211331.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWNKQWE"
     gene            3083..3289
                     /locus_tag="SFZ78_000428"
     CDS             3083..3289
                     /locus_tag="SFZ78_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211332.1"
                     /translation="MGIMLGILSLIAGFVAIVLMCSLYFIVFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            3366..4484
                     /locus_tag="SFZ78_000429"
     CDS             3366..4484
                     /locus_tag="SFZ78_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding GTPase"
                     /protein_id="HEG8211333.1"
                     /translation="MANNEFNFNNGSFFNEIMTMFEKIKKEEQENNKLNVLILGKTGA
                     GKSTLINTVFGEKVAKTGSGSPITANLNKYEKDGLCIYDSKGLEIKDDKGIDNLKQFI
                     EDQKAKEPSDQIHLVWFCICEANRRIEPQEKELIKFLKSEKFCTILVITKAQQDKDEN
                     GCSFKDIVKKELELDDEKIERVRAIAIEDDEGNVKKLLGIKELVNKTYCFLNEGQKNA
                     FARKQQYDKDLKREACKEKAQDKIKYYAGLSSTVALSPIPFSDFPLIATNQCAMIYHI
                     SMIYELNLSSKDDALKILTALLATGVTGFAVKTLATGLMKFIPGVNFIGGAINATVAY
                     NATKKIGEFYIDYLDEHFEDIQNGKKLDFEFKNLSIEK"
     gene            4495..4665
                     /locus_tag="SFZ78_000430"
     CDS             4495..4665
                     /locus_tag="SFZ78_000430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211334.1"
                     /translation="MIKPIPKFQKCIKCGKSFLAKPKSDALNTLDFICSDCKGEKSGF
                     LSSLFEIFKPKH"
     gene            4679..4984
                     /locus_tag="SFZ78_000431"
     CDS             4679..4984
                     /locus_tag="SFZ78_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211335.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            4993..6060
                     /locus_tag="SFZ78_000432"
     CDS             4993..6060
                     /locus_tag="SFZ78_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211336.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVIKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLTYNVQSKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKSILTHKEIS"
     gene            6057..6929
                     /locus_tag="SFZ78_000433"
     CDS             6057..6929
                     /locus_tag="SFZ78_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG8211337.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(6951..7026)
                     /locus_tag="SFZ78_000434"
     tRNA            complement(6951..7026)
                     /locus_tag="SFZ78_000434"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6991..6993),aa:Met,seq:cat)
     gene            complement(7060..7134)
                     /locus_tag="SFZ78_000435"
     tRNA            complement(7060..7134)
                     /locus_tag="SFZ78_000435"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7100..7102),aa:Gln,seq:ttg)
     gene            7227..8246
                     /locus_tag="SFZ78_000436"
     CDS             7227..8246
                     /locus_tag="SFZ78_000436"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG8211338.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            8258..8701
                     /locus_tag="SFZ78_000437"
     CDS             8258..8701
                     /locus_tag="SFZ78_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG8211339.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            8719..10419
                     /locus_tag="SFZ78_000438"
     CDS             8719..10419
                     /locus_tag="SFZ78_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG8211340.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            10416..10880
                     /gene="ilvN"
                     /locus_tag="SFZ78_000439"
     CDS             10416..10880
                     /gene="ilvN"
                     /locus_tag="SFZ78_000439"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG8211341.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            10877..11842
                     /gene="lpxD"
                     /locus_tag="SFZ78_000440"
     CDS             10877..11842
                     /gene="lpxD"
                     /locus_tag="SFZ78_000440"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG8211342.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(11831..12859)
                     /gene="queA"
                     /locus_tag="SFZ78_000441"
     CDS             complement(11831..12859)
                     /gene="queA"
                     /locus_tag="SFZ78_000441"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG8211343.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHDPLFLAQIK
                     GRVKKDEILYFKDDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(12852..13589)
                     /gene="tatC"
                     /locus_tag="SFZ78_000442"
     CDS             complement(12852..13589)
                     /gene="tatC"
                     /locus_tag="SFZ78_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG8211344.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            complement(13590..13997)
                     /gene="tatB"
                     /locus_tag="SFZ78_000443"
     CDS             complement(13590..13997)
                     /gene="tatB"
                     /locus_tag="SFZ78_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG8211345.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            complement(14056..15123)
                     /locus_tag="SFZ78_000444"
     CDS             complement(14056..15123)
                     /locus_tag="SFZ78_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8211346.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFQALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKALITHLSAYNLTIESNTAFTKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            15224..15694
                     /locus_tag="SFZ78_000445"
     CDS             15224..15694
                     /locus_tag="SFZ78_000445"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG8211347.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            15696..16898
                     /locus_tag="SFZ78_000446"
     CDS             15696..16898
                     /locus_tag="SFZ78_000446"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG8211348.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSVQQGDQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVSCALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            16899..17435
                     /locus_tag="SFZ78_000447"
     CDS             16899..17435
                     /locus_tag="SFZ78_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG8211349.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            17441..18040
                     /locus_tag="SFZ78_000448"
     CDS             17441..18040
                     /locus_tag="SFZ78_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8211350.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYEGYELAKLNSKSGVLLATLLLNYYTKK"
     gene            18042..19184
                     /gene="folP"
                     /locus_tag="SFZ78_000449"
     CDS             18042..19184
                     /gene="folP"
                     /locus_tag="SFZ78_000449"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG8211351.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRIGAELITHKEVITAKITHSNALLMASKEQIQKLIAKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPAYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPSYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            19185..21128
                     /gene="ligA"
                     /locus_tag="SFZ78_000450"
     CDS             19185..21128
                     /gene="ligA"
                     /locus_tag="SFZ78_000450"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG8211352.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFE
                     EQNKDEISKDSPTQKIAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNHTRIDEFYKLLNLKIEK
                     LEIKSDSMIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            21109..>21598
                     /locus_tag="SFZ78_000451"
     CDS             21109..>21598
                     /locus_tag="SFZ78_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211353.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFIDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLE"
BASE COUNT         7765 a         2783 c         3879 g         7171 t
ORIGIN      
        1 ttgataggtt tcatcataaa atcctatatc gctatttctt ttttctatgc cataatttgc
       61 aaaaccataa agtccgttat aacccaaaaa ttgattttta acaactttta aattaagctt
      121 aactatatta ccatcttgtt ttttgtgaaa gataggatca gttcctactg cttcatattt
      181 gctaagattt aaatttggag tgaagatgta atcattagca aaagccaaat ttgttcctat
      241 actaaaacca tatcttgaat agctttgagc ttttccgtct gcatcattgt aatcataatt
      301 taaccctagg tttaataagc tataattata gtttaattca atttcgtgat aatatccctc
      361 cctttttaaa gagctttgtg cgatagtgtc tttatcatat ttgtttttgc taaataaata
      421 tgaagtggta aatttcccaa aatcactttc ataaagttga gagattttaa aaccatatct
      481 atcaacatca gtttcttctc tatttcctat tacataagga tttgcataag ctttttctct
      541 taaagaggaa attacagaaa aagaagtgct aaaacgctct aaataagctc tttcgtagcc
      601 taaagctata ccgctgatat ctcttccatt gtagttttta ataaaaattc tatcattatc
      661 tataagatta ccatagtaaa gttctgcacc gataaaagga atgaaagagg agtctgaatt
      721 atcagcattg tgactgctta gataatcgct gtttgccaag gttgaaatat tacttttaat
      781 atcccttgca cccacaccta tgcttaaatt tccactaaaa ccttcttgaa attctacagc
      841 cgtagctgat tgggttaaaa tggaggctaa aacacaggaa aataaatatt ttttcaaatg
      901 ttctccttga aatgtttgtt gtttgtaatt aaattacatt tataattgta actaatatta
      961 cattaaatat ttataaaaaa attaagtttt ataatttaag tttttttaga tagaattttt
     1021 agaattaatt tatatttata aggaaattta gtgcagcaag agtattatga cttggattta
     1081 gaacgagcta ttttaagcag ttgtatcatg agtgaagaag cttatgctag tatagcaggt
     1141 gatattagcc caaaagattt tagtcttaaa gctcaccaag atatttttaa agcggttata
     1201 gcttgtagta ataacaaaga gcccatttct gtaagttttt taagaaaaca taaaaaaata
     1261 gatgagcaaa ttttagcaga aattcttgcc actccttcta tgatagattt gcctgcttat
     1321 gtaaatgaac ttcacgaaaa gtccgtaaaa agacaactct tgagttttgc acatcttttg
     1381 ccaactcgta tcaatgaaga tcgtgctgta agtgaaatcg cagatgaaat tggtaaagaa
     1441 atttttagca ttacaaatcg tgtgaattct agagatatta aagatgttga tatggtaata
     1501 tcagaacttt ttgaagaatt taaaaagcaa aaaactttag aaaataaagg tattataggg
     1561 cttgatacag gttttgaagg tctaaataaa atgacaaaag gctttaaagg gggtgaactt
     1621 ataataatcg ccgcgcgtcc aggtatggga aagacaactc tttgtttaaa tttcattgat
     1681 aaggttttaa gacaaaaaaa aggcgtggct ttattttctc ttgaaatgcc tgcaactcaa
     1741 atcatgcaaa gaatgctatc ttctaaaact tctattcctt tgcaaaaaat tttaactgca
     1801 gatttaaacg atgatgaatg ggagcgttta ggagatgctt gcaatgatta tagtcaaaag
     1861 aaattatata tttacgatag tggttatgca actattgctg atgtaagggc tattttaagg
     1921 cgtttaaaat ctcaagatga aagtatagga ctttgtgtga ttgactatat agggcttatg
     1981 atgagtaatt caaattttaa tgatagacat ttgcaagtta gtgaaatttc aagaggactt
     2041 aagcttttgg ctagggagct tgatatgcct attatcgcac tttcacaact taatcgtggc
     2101 ttagagcaaa gggcaaataa gcgtcctttg atgagtgatt tgcgagaaag tggagctata
     2161 gagcaagatg cggatgctat tttgtttgta tatcgcgatg aggtttatag agaacaagaa
     2221 gaaaaagaaa gagagaataa agctaaagct gaaggcaaag cttatcaaag gctttttata
     2281 ccaaatccta tgcaagaaaa tgctgaaatt attgttggaa aaaatagaaa tgggcctgtt
     2341 ggaactatag aagttgtatt tttaaaagaa aaatcttgtt ttgtagataa acctataggc
     2401 tatgaaacta ctgaatttac aggctagctt taataaaata agtttttaat attttaaagt
     2461 tattttttac gacacaacct gtcgcaaggg tgttttatac tttctttgtt attttaaaac
     2521 aaggagagaa aatgttaaaa caaatcgcat ttggtagtat agctcttaca gctacaggat
     2581 atggcataaa aaaattatac gaaaaattat ccaagccaga aagaaaattt gatacacatg
     2641 ctattgttcc aagctgtaaa gatatgatca ataccgaaga atacaaactc aaaagagagc
     2701 ttgaaatcga acaaaagaaa aatcaaattc aagaatttct ttgcgaatgt atggagtgtt
     2761 atagcggctt ttcaaaatat tttaattcta aggaattttt agaatttgag caaaatttta
     2821 cctctaaaaa taatcataaa acagaatttc ttttgtcgtc ttataaagat caaatgataa
     2881 aagtgatcga ctatgctaaa aaatttgaat gcttgagtgc ttttttggaa acacaaagcg
     2941 aaaaaaatga cttagcggtt gtaaaaatga taagcgaaag tatggagaga aaaacacaga
     3001 gattttatct gcaaacaaaa tttcaaactt ttcctcagta tatttttcct tctgtgtgga
     3061 gttctcctat gtggaataaa caatgggaat aatgcttgga attttaagcc ttatagctgg
     3121 ctttgttgcc atagtgttga tgtgtagttt gtattttata gtgtttatgg tttttgttgg
     3181 catagcgata cttatttttc tttctatgca accttatcct tataatataa tattttgtgc
     3241 tatatattta atcacaattt tagcgctagt gctatggcgt aaaacttaaa aatttcactt
     3301 cccccttgac tgggggggga tttgataaaa tacaaagtta aaaattttaa aaacaaggag
     3361 aaagtatggc aaataatgag tttaatttca acaatggatc tttttttaac gagataatga
     3421 caatgtttga aaaaatcaaa aaagaagaac aagaaaataa taagttaaat gttttaatac
     3481 ttggaaaaac aggtgcagga aaaagtactt taattaatac cgtatttggt gaaaaagtag
     3541 ccaaaacagg tagcggctct ccaatcactg ctaatttaaa caaatatgaa aaagatggac
     3601 tttgtatata tgatagtaaa ggtcttgaaa taaaagatga caaaggtatt gataacttaa
     3661 aacaatttat cgaagatcaa aaagcaaaag aaccttcaga tcaaattcat ttggtatggt
     3721 tttgtatttg tgaagcaaat cgaagaatag aaccacaaga aaaagaatta ataaaatttt
     3781 taaaatctga aaaattttgt acaatattgg ttatcactaa agctcaacaa gataaagatg
     3841 aaaatggttg tagttttaag gatattgtta aaaaagagct tgaattagat gatgaaaaaa
     3901 tagaaagagt aagagctata gcaattgaag atgatgaagg aaatgttaaa aaacttttag
     3961 gtattaaaga gttagtcaat aaaacttatt gttttttaaa tgaaggacaa aaaaatgctt
     4021 ttgcaagaaa acaacaatat gataaagatt taaaaagaga agcttgcaaa gaaaaggctc
     4081 aagataagat taaatattat gcaggattat cttcaactgt agcattatct cctatacctt
     4141 tttctgactt tcctcttatt gcaaccaatc aatgtgctat gatttatcat attagtatga
     4201 tttacgagct taatttaagc agtaaagatg atgctttaaa aattttaaca gctttacttg
     4261 ctacaggtgt tacaggattt gcagtcaaaa cgcttgctac aggtcttatg aaatttattc
     4321 ctggtgtcaa ttttataggt ggagctatta acgcaacagt agcctacaac gccactaaaa
     4381 aaatcggaga attttatata gattatttag atgaacattt tgaagatata caaaatggaa
     4441 aaaaacttga ttttgaattt aaaaatttat caatagaaaa ataagcaata aatcatgatt
     4501 aagcctattc caaaatttca aaaatgtata aaatgtggca aaagtttttt agctaaacct
     4561 aaaagcgatg ctttaaatac tttagatttt atatgtagtg attgcaaagg cgaaaaaagt
     4621 ggatttttaa gttctttgtt tgaaattttt aaaccaaaac actaatcaag gaaaagaaat
     4681 gttttctaag attttctcat ctcttagtct tgcaaatgcg tttaaaggct ttttatttaa
     4741 acgcatttca agccctatgc aaagtgctcg tattatcagt atggttttag atataaaaaa
     4801 tgcttttaat gacagcaaag atcaagcaag tagtatttgt aaaactttgg atttgatagt
     4861 aaattttaaa aaagaacacc cgcaggattt taacgagttg tttgaaattt taaaagatct
     4921 catacaagaa tacgagcaaa atcctaatga aatcaagcaa aatctcaaag aaatcctaaa
     4981 ataaggcaaa atatgaacca ccttttaatc ctttataacc cctactatca agaagatgtc
     5041 atcaagcaac acttaagcat tttgcaagaa aaatcccaag ttgcctttgg caaaatcaaa
     5101 tcaaagctca acgatcaaga aaagcaaaat tccttagaag aaatttacca aagtacaaat
     5161 gaagaaaatt tcttgcaact ctttttaagc gattatgcta atttatttgt cgctaaggtg
     5221 ataaaaattt ctaaaaatgt tgatgaaagt ttgattccta gttattataa agaaaaaaat
     5281 ttagaagtgg aagacttttt tattatcagt gatttaagag aattggtcag ggaagatttt
     5341 agtcttttaa gagataaatt tttagccaat ttcatcaccc caaacgatca cacttatgct
     5401 atttatggca ataattacac ctatcctttg cctgtgagat taaaagaaga gtgttcttat
     5461 tttttaggag atgaaaagca ttatttaagc gtgtataaaa gtaaagaata cctagccatg
     5521 caagaaaatt tcatacgctt tgtttttggc aaaaggattt tttatctctt gcaccctgat
     5581 agcataagca atatcattca tgcagaatta gagcttttgc aaagcgaaaa cgatctttta
     5641 aatgatttta caagcattat agtcaaatac tccaaaacct tagaatatga aatttatgct
     5701 tttgccaaaa aagttctttt aaaagcttgt atgaaagatc ctagccttta tgatttaact
     5761 tataatgtcc aaagcaaatc ttttatactt aaagattttt ttacccaaaa acccaatctt
     5821 ggaagtatta aatttctact cagacatgaa aatatccaat gtcatttagg aaaaagttta
     5881 actcaattta tcaattatcc tttttcaaaa agtcttactc tcattcaaga aatccgcaat
     5941 gaagccgttc atgcaaaagc cccaagttta aatgaagtca aaaaacttag aaatgaaatt
     6001 ttaggcatag aaggcgtaag tttgttaaaa agcattttaa ctcacaagga aatttcatga
     6061 aagaatacga caaattaagc atacgcttgg tgcagatttt atcaaaattt aacaatgggg
     6121 aaagtctaag cgcccaagag cttgcacaag agtttaatgt cgatacaaga accatacaaa
     6181 gggatcttaa cgaaagactt acttttatgc ctattaaaaa agaaaatgga agatatgttt
     6241 tagaaagctt tgctttggga aaattaagct ttaaagacat acagaatttt gccaccttaa
     6301 gtggtattgc tgagctttat ccaaaactcg atcaaggctt tatagtcgat cttttaagcc
     6361 atagggtaaa taaagttttg atggtaaaaa atgaaggttt tcaaaaggtg gattatgagc
     6421 tttttaaaga tcttagtgta gctatactca aacacaatgt attgaatttt ttctacaaga
     6481 aaaaagaacg ccaaatcaaa ccttacaaac tcgtaaatta caaaggaatt tggtatcttt
     6541 taggggatga aaatgataaa ttaaaacatt ttaatttaga taaaatttca aaacttcgca
     6601 ctaaaaatga aaattttatt cccaatgaaa aacttcaaga acaaatccaa aatgatccta
     6661 atatctggct tggagaaagc aaagaagtga ttttaaaact tgataaaaat gctaaggaat
     6721 atttttttag aaaagaaata ctaagtaatt atcaaatcat tgataaagat gaaacaagct
     6781 atactttaag cactcaagtt tcctatgaag atgaaatttt acatttggtt aaacagtgga
     6841 ttccttatat aaaaattcta gctcctatag aactgaaaat acggctagaa gatattttaa
     6901 aaagttattt aaacaatcta tctaaataaa atttatttta aatccataac tggttgcgaa
     6961 ggggagattt gaactcccga ccttcgggtt atgagcccga cgagctaacc actgctctac
     7021 ttcgcggcat ataagatctt tgaaatataa aataagaagt ggatggggta aagggattcg
     7081 aacccctgaa tgacaggacc aaaacctgtt gccttaccgc ttggcgatac cccaataaat
     7141 attttttaaa agtgtgatta taatgaattt taatttattt gtcaagcaat ttaagttata
     7201 attttaaaaa ttttgaggaa ataaaaatga aatttgttag cgtagaacaa gcgattaagg
     7261 atttacaagc aggaaaaatg cttgttatgg tagatgcaga agatagagaa aatgaaggcg
     7321 atttaatctt tcctgcgcaa tttagtactc aagaaaaagt aaatttcatg ataaaagaag
     7381 ctcgtggtgt ggtttgtgta gccttagatg aaactttggc aaaaaaattt gaacttcctt
     7441 taatggtgcc taaaaatact tcaaaccacg aaactgcttt tactataacc gtagatgcaa
     7501 aagatgctac aacgggagtt agcgcctatg aaagaaatat gactatacaa atttttgccg
     7561 atgataatgc taaggcgagt gattttgtaa gaccagggca tatcaatcct ttaatcgcaa
     7621 aaaaaggtgg ggttttagaa cgcacaggtc atacagaagg cacggttgat ctttgtaaat
     7681 tagcaggatt aaaaggtgct tgtgtgattt gtgaaattgt aaaagataat ggagatatgg
     7741 caagaagaga agatctagaa attttttgcc aaaaacatga tttaaatatg atagccgtaa
     7801 gcgatcttat agaatatcgc ctaaaacatg aaagtcttat taagcttgaa gaaaaaagtc
     7861 aaagtgtttt agcaggcttt aaagcagaaa aatttatctt tagtgatcat aatcaaaccc
     7921 aacacatagc tttttgcttt aaagatatca aaaaatgtga aaatgttaaa tttcatatca
     7981 gtggtagtga ttttgagctt ttaacttcag ataaattttc aaaactttta gagcaaatca
     8041 aatttcttag tgaaaatggt ggcgttatag ttttcatgca aggagaaaaa tccagcacca
     8101 ctcaatacaa aaactatggt ataggagcac agattttaag atattttggt atagaagaaa
     8161 ttaaactttt atctcaaagt tgtgataaag actatatagg cttagaaggt tttggtttaa
     8221 accttaaagc ttgtaatttt aactaaaaag gaaaaaaatg actttaaaag aacaaatttt
     8281 aaacgatatc aaagaggcaa tgaaacaaaa agatgatttt aaaagagata gtttaagaac
     8341 tctaaatgca gcttttaagc aaatagaagt ggatgaaaga atagagttgg ataatgaaag
     8401 aatttataaa atcattgcaa gtgaaatcaa aaaacgcaaa gacgcaatcg aactttatct
     8461 taaggcaaat cgtgaagatt tagcacaaaa agaacaaaat gaaataagtc tttttgaaat
     8521 ttatctgcct aaacaactaa gtgatgagga gttaacttta gccttaaaac aacttataga
     8581 agaattgggc gtaagttcac taaaagaaca aggtttggta atgaaagaag ctaaaataaa
     8641 attaggtgcg agtgttgatg gcaaaagact taatttagca cttaaagagc ttttacaata
     8701 attttttgga gtgttattat gaaagagtta agcggttcgg caatgatttg cgaggcttta
     8761 aaagaagaaa atgttaaaat tgtttttggt tatcctggag gcgctgcgct taatatttat
     8821 gatgaaattt acaatcaaaa gtattttaaa catattttag tgcgtcatga acaagcggct
     8881 ttgcatgctg ctgatgctta cgcaagaatg agcggagaag tgggcgtagc tatagttaca
     8941 agcggaccag gttttacaaa tactattaca ggtctagcta cggcttatag cgattctatc
     9001 cctttggtgt tgatttcagg gcaggtggca aattctctta ttggtacaga tgcttttcaa
     9061 gaaattgatg cagtaggcat ttcaagacct tgtgtaaagc ataattattt agttacttgt
     9121 atagaagagt ttccacgcat tttaaaagag gctttttata tagcaagaag tggtagacct
     9181 gggcctgtgc atatagatgt gccaaaagac gtaagtgcaa ctttgggact ttgggaatac
     9241 tctaaagaaa tttccatgaa gacttataag cccgtttata agggtaactc aaagcaaatt
     9301 aaaaaatttg cagagctttt aaaagaagca aaaagacctt tgttttactt aggtggaggt
     9361 tgcatcagtt ctaatgcaag cgagcaaatc agagagctta taaaatttac aaaaattcca
     9421 gcagttgaaa ctttgatggc gcttggaact ttaagaagtg atgatgtttt taatcttaaa
     9481 atggcaggta tgcatggaag ctatgctgct aatatggctt taagtgagtg tgatttgctt
     9541 gtgagtgtag gagcgagatt tgatgatagg attacaggaa aaacaagtga atttgctaaa
     9601 catgcgacta tagttcatgt tgatattgat cctagttcta tttcaaagat tatcaatgcg
     9661 cattatccta tagtaggaga tattaaagaa gttcttaaag agcttttaga agagcttaaa
     9721 aaggaaaatt tcaacacaac ttttaaagaa tggcacgaaa ctttaaagcg ttataatgaa
     9781 ctttatccgc tttcttatga agatagcaat gagattttaa aaccgcaatg ggtgattgaa
     9841 gaatgtgcga aaatggctcc agatgcaagg attattaccg atgtgggtca gcatcaaatg
     9901 tgggtggcac agttttatcc ttttaattat ccaagacaac ttgcaacaag tggagggcaa
     9961 ggaactatgg gatattcttt acctgctgct ttgggtgcaa agcttgccgt gggtgaagaa
    10021 gtggtgatta atttcgtagg tgatggatcg gttttaatga atatccaaga gcttatgact
    10081 gcttatgagt atggtataaa aactataaat attattttaa ataatgcctt tttaggtatg
    10141 gtaagacaat ggcaaagtat gttttataaa gagcattttt cacaaactga tttaagcact
    10201 cagcctgatt ttatcaaaat tgctcaaggt tttggttgtg aaggttatga aatttcaagc
    10261 aaagaagaat tcattcaagc ttttagccaa gctttaaaaa gtgataaaac ctctctttta
    10321 aatgtaaaaa ttgatcgctt tgaagatgtt ttacctatgg tgcctgcagg aggtgcgatt
    10381 tataatatga ttttaccaaa ggcaaaggat agacaatgag aagggtttta tcggtaattg
    10441 ttttaaatga gcatggggtt ttatctcgta tagtaggact tttttcagga agaggttata
    10501 atattgactc gcttacagta gcacctttgg aaaataaaga attttctcgt attaatatag
    10561 tcacctcagg aaatgaaaga acttttgagc agatagtcaa acaacttcat aagctcattc
    10621 ctacttataa agtgatagaa agtgaagaat ttattgacaa agaaatggct ttagtgaaaa
    10681 ttcctttaaa tgaaaattta ggtggacttg atgccgtttt gaaagcttat aatggtacta
    10741 ttgcaaatag caatgagaat tttttgtttt taatggttgc tgatgatgca aatcgcattg
    10801 ataatttttt aaaaacaatt aaaaaataca atcctagtga tatagttcgc agtggatctg
    10861 ttttgatgga gattaaatga aattaagtga aatagcagaa tttttaagct tggaatataa
    10921 aggcgaggat atagaaatca gtgctttaaa ttctttattg aaagcaaatt ttacagagct
    10981 tacttattgt gatggtgaga aaaataccaa agatatacct cacacaggag ctgctgctat
    11041 tttagtatct aaagaatatg aaaatttagt acctaaagat actaaagctt tgattactca
    11101 aagtccacat ttgagttttg cttttttaag caagcttttt gctaaacctt tgataagcac
    11161 agctaaagaa aaagtacaaa atatcgcaaa aagcgcaaga atcatgccta atgtttatat
    11221 aggtgataat gtaaatatcg gtgaaaatgt aatcattatg gcgggagctt atataggcga
    11281 taatgtcagc attggtgatg agagtattat ccatcctaat gtagtgattt ataatgatac
    11341 taaaatcggt aaaaaatgtc atttgcttgc caattgtgta ataggaagcg atggctttgg
    11401 ttatgcgcac aataaaaacg gcgaacatta taaaatttat cataatggca atgtggtttt
    11461 agaagatttt gtagaagtgg gggcttgtac aactatagat agagcagttt ttgatagtac
    11521 tattatcaaa gcaggtacta aggtagacaa tctagttcaa atcggacata attgcaatat
    11581 aggtcaaaat tgtatcattg tggcacaaac tggaatttca ggttcaagtg agttaggacg
    11641 caatgttatt atgggtggtc aaagtgcaac gagtggacat ttaaaaatag gcgattttag
    11701 tactatagct gcaagaggcg gtgtgagtaa aaatttagaa ggcgggcgtg tttatggagg
    11761 ttttcctatc atgcttcaaa aagattggct aaaacttcaa gctaaaatag caataaattt
    11821 taaagaaaaa tcacaagatt aacatcgcat cgccataaga gtaaaagcga tatttttctt
    11881 ttatggcgag ttcataaagt tttaaacact gttctctacc gataaaagct gaaactagca
    11941 tgataagagt agattttggt aaatgaaaat tggttaaaag atgattttgt cttataggtg
    12001 gattttgcgg gtgtaaaaaa agatcacaaa aaccattttt tgttttagtt cttgcataat
    12061 attctatggt tcttgttacc gttgttccta cgcctaaaat agcttgttta gaatctataa
    12121 tttcacatgc ttgctgcgga atattaaaaa attcgctatg cattttatgc tcttgtatat
    12181 tttcgcattc cacgctttta aaggttccag ctcctacatg taaggttaaa tgataaattt
    12241 cgtgtttttt tcttaaattt tcaagcatag tctcactaaa atgtaaactt gcagtcggag
    12301 cagccactgc acctaaattt tttgcaaaga tactttgata atctttcaaa tcactttttt
    12361 catcctccct tttaatataa ggaggcaagg gtatatgtcc tatcttgtca agcaggttgt
    12421 aaagatttga ggtgtctaag gttttatcat tttgaaaaaa ttgaactttt cgaagaccat
    12481 catttaaaag ttctacaacg cgtactttta aatcatcttt aaaatataag atttcatctt
    12541 ttttaacacg ccctttaatt tgagctagaa aaagcggatc gtgagaattt aaaaaaggtt
    12601 gatgcaagaa aagctctatt tttcctccgc ttgctttatt gccataaatt cttgctttaa
    12661 taactttggt atcattgaaa aaaatcgcgc agttgggtaa aaagtcttgt aaatttttaa
    12721 aagtagtatg aaaaatttct ttgtttttgc gatcaaaaac caaaagccta gcatcttctt
    12781 ttggatttgt aggatagttg gctatgagtt cattagctag agtgtaatca tagcttgaaa
    12841 gaagtaagtc tttattcatc actttcttta tcttttggag caggatttac cttttgaaca
    12901 attaaaatag aaagtccata aagtccgcaa agtggtcctg ccattaaaaa ttgagataaa
    12961 acatcaggtg gagtcataaa ggctgaaaaa acaaaaataa ctaaaacagc tatgcgaaaa
    13021 tggcgtttta aaaaactatc atctataagt ccgattttag caaagaaaaa ggcaattaca
    13081 ggcatttcaa aagctaagcc aaaagccaca acaactttcg taaaaaaatc tacataagtt
    13141 cctatggtaa tcacaggatt aaaatcttca tttaaaccaa aattaattaa aaatttaaaa
    13201 gccaaaggca ctacaacaaa atagcaaaaa caagccccca aggcaaacat aatgcttgca
    13261 aagctaacaa aaggcaccac aaggcgtttt tcattatcat aaagtcctgg agctacaaat
    13321 ttccaaaatt gccaaaaaat tacaggtaga gaaaagataa aggctgcaaa aaaactaacc
    13381 ttcattgcgg taaataaggc ttcttgtact tcaattacat tcacatgttt ggctacttcg
    13441 ggtaaaacag ctataagtgg agcttttaaa atatctaaga tatagcttcg tagagcaaaa
    13501 catacaataa acataactac aatgcaagca acgcttataa aaaggcgttt tctaagttct
    13561 attaaatgag gtcttaattc ttcaaacatt tatttttccg ttttatcttg tgtttctaat
    13621 ttgctaagat ttggtttttc ctctgtattt aaattttgtc cgctaaggtt attttttact
    13681 ttatcatctc tgctatcaaa ggttaaatct acctttgttt tatctaaaat atctctttta
    13741 aggtcatcaa attcttcaaa actgagtttt ttgcgtatat tttcattagt gcttgaaaat
    13801 tcatctttgt atttcttagc ttcttctttt aagtcattga tgcgtatttc tttttctatg
    13861 cttgattttg catcatctat gttgcgtttt acagccttta gaatttttgc tatttgcact
    13921 atagcttctg gaagtttatc aggccctaag actaaaatcg ctacaactaa aataactata
    13981 atttcaccaa aactcattaa tcgttactct ttgatttgat attttaaata aatattttac
    14041 ttaaaaaact taaatttaag atgagagata taaagcaagt tcgtcgctaa tgagaaaatt
    14101 aggattaaaa tatcttttat ttttgtaaaa gagttttttt tcttttaata atatatttat
    14161 tttgtctttt tgccattgat tgagttttgt ttcatcaatc cctactatac ttctaagtcc
    14221 taaaaatagg tgttctaaat tcaagtcttt agagcttagt tgctctatag atctaaaagt
    14281 gggattttct atgtaatttt ttaaattttt tgctgtataa aaacgcttat tttcataaaa
    14341 tcctaccgca cttaatccac aagctaggta gttttttcct tgccaataag caagattatg
    14401 tttgcaaatt tgggctttgg tttttgaaaa attgctgatt tcatattgaa aaaagtcaag
    14461 ctctagaagt tgtttgataa aaaatttcat taaattagga gcattttttt tgaaatgttc
    14521 ttttttggta aaggctgtgt ttgattctat ggttaaatta taagcactaa ggtgtgtgat
    14581 taaagccttg atttgtttta agtgtaagag ttcaaattca agcatttttt tattgtctaa
    14641 ttttgtatca taaataagat ctaaattgat atttttaaaa cctactttat ttgcattttc
    14701 taatgctttg ataatcattt cttgattgtg aattcttcca agaaagtgaa gttttttagg
    14761 atgaaaactt tgagctccaa aagaaatgcg attaactcct agatttttca tatttttaag
    14821 ccaatttaat gttgctgagt tgggattagc ttcgcatgaa atttctacat ttttatctag
    14881 taagggatat aaaattttaa aaatatcttc ataattatac gcatcgacac aacttggtgt
    14941 tcctccgcct atgaataagg ttttaatttg atttgattga atgttaaatt gttttaattg
    15001 aaaaacaata tcttctttta aagcctgaaa ataggctttt tcataatcat tttttttcaa
    15061 acttgtaaaa gcgcaataat tacatttgct ttcacaaaat ggaatatgga tataaaaatg
    15121 cataaaaacc ctaaaatatt ttattaaatt tttaatgtat tttaataaaa atttgatttg
    15181 atttaggtta aaattatatc cttgagattt aaggaaaaat attgtggaaa acgagaaaaa
    15241 ttatagacca aatgttgcag ctattgtttt atcaagttct tatcctttcg agtgtaagat
    15301 ttttatagct aaaagaagtg atatggataa tatttggcaa tttccacaag gaggcattga
    15361 taaaggtgaa agtgtcaaaa acgctttatt tagagaatta aaagaagaaa taggcactga
    15421 tgaggttgaa atcattgctg agtatccaga atggttgagt tatgattttc cgagtaaaat
    15481 tgttaaaaaa atgtatcctt atgatgggca gattcaaaaa tattttttag tgcgtttaaa
    15541 gcacggtgct acaatcaata tcaataccaa gcatcctgaa tttgatgatt atcaatttgt
    15601 gagtgttaaa caaatttttg aaatgattaa tcatttcaaa aaaaatattt atgttaaagt
    15661 gatcaaatat tttgaagaga aaggttatat ctaaaatgct tatagttcaa aaatatggtg
    15721 gaacaagcgt tggaacactt gagcgtatcg aagcagtagc caatagggtt atccaaagtg
    15781 tgcaacaggg tgatcaactt gttgttgtag tatctgcaat gagtggggtg acaaatactc
    15841 ttatcgagca agctgaatat tttagtaaaa ctcctaatgg taaagatatg gatatgcttt
    15901 taagcagtgg agagcgtgta agctgtgctt tactttctat tgctttaaat gaaaagggtt
    15961 atcctgctat atcattttct gggagaaaag cgggaattat tacagatagt gtttttacaa
    16021 aggcaagaat tcatcatatt gatacaaaag cgataaaatc agaacttcaa aatggtaaaa
    16081 tagtcgttat agcaggtttt caaggtgtag atgaggaagg taatgtaact accttagggc
    16141 gtggtggaag cgacttaagt gctgtggcgg tagcaggtgc cttaaatgcg gatttgtgtg
    16201 aaatttatac cgatgttgat ggggtttata caacagatcc aagaattgaa ccaaaggcaa
    16261 agaaattgga taaaatttct tatgaagaaa tgcttgaact tgcaagtttg ggtgcaaaag
    16321 ttttgcaaaa tcgctctgta gagcttgcaa aaaaattaaa tgttaactta gtaactagaa
    16381 gtagttttaa caataacgaa ggaacaatga taacaaagga agatggaatg gaacaagctt
    16441 tagtaagtgg tattgctttg gataaaaatc aagcaagagt gactttaaga aatgtagaag
    16501 ataagcctgg aatcgcagct gaaatttttt ctgttttggc aaatgaaaat attaatgtag
    16561 atatgattat acaaaatgtt ggagttgatg gcgctacaaa tttgggtttt acagttcctc
    16621 aaaatgaact tgaattagcc aaaaatgcta tgcaaaaaat tttaagctca aaaacaacta
    16681 tagaaagtga tagtgctgta gtaaaagttt ctatagtcgg cgtaggcatg aaatcacatt
    16741 caggagtggc aagtaaagct tttaaagctt tagctgatga ggggattaat atcggtatga
    16801 tttctactag tgaaattaaa atttcaatga tagttcatga aaaatacgga gaacttgcag
    16861 ttagagcact acatgagtgc tacggacttg ataaataaat gagtgatttt ttaagtttta
    16921 ctcttgaaaa tattcgcaat ggcggagctt ttatggcatg gttggagtcg cgtcgtttag
    16981 aatgggctcc tttgatggct gcaagactta aatatctttt agagggacgc acttttgtct
    17041 taatgtgcga tgaacaaaga tcttggtatg aagagtattt tttaaaaaat ataaattcaa
    17101 aagccgctcg tcctatgctt ccttttgtgt cgttaaattc tttatgcaag aagaaagtac
    17161 aaagttcaga agatatagct ttacttaatg acttgcttga catttctttt cctaatggtt
    17221 atgtgtattt ttatatagga agtgcttctg ataataaatc tttaatcgct aaatcaagag
    17281 atgatagttt attgtggctt tttgatgagc agttacaaga tagtttttat ttaaattcta
    17341 aagataaaga cttggatatc aagcttatta gtttatatca actttttgat gtaagtttgg
    17401 atgcaatatt attttccaag gtgcaattag gataaatatt ttgtttatta gtaagattat
    17461 tatcagcgaa gattttttag gtattaaaga agaaatgatt aataattttg gtattaaaaa
    17521 attaagattt tttatgccac aaaatgaatt tttacttgat gatgcaagag cggttgaaaa
    17581 agaaagctat attgcagaaa ctgaagaaaa aattattgtt ttaatggcgg attcttatag
    17641 gatagaagca caaaattttt tacttaaact tcttgaagag cctccaaaaa atattaaatt
    17701 tcttattgtg gtaccttcta aaaatttact tttacctacc ataaaatcgc gtcttatttg
    17761 cgaaaaaaga aaagttgaaa aggaagttaa aaaacttgat ttagatctta aaagaatgga
    17821 tttaagaatg ctttttgatt ttttgcaaaa aaatgaaaat ttggataaaa atgaacttat
    17881 ggatcaaatc gcattacttg ctaaagaatg tgtgaaatat aaagatttta atgctgaaga
    17941 attagagttt ttttatgaag gctatgagct tgcaaaatta aattctaaaa gcggggtgct
    18001 tttagctact cttttgttaa attactatac aaagaaataa aatgaaattt tttaaaatca
    18061 atccaaatac cgattttaat ttgctttgtt ctttcataaa tccccataaa atgggacaaa
    18121 agattatgag tgaaaaaaca aaaattcatt ttatttttat caaagatatt tccactcctg
    18181 cagcaaatat tttaaaacaa gatgctttaa gaataggagc tgaacttatt actcataaag
    18241 aagtaattac tgcaaaaatc actcattcaa atgcactttt aatggcaagt aaagagcaaa
    18301 ttcaaaagct tattgctaaa gaaaaacttc aagattttgg acttaaaaat ttggctcttt
    18361 ttttacaaaa agatttttta aaaccaaaaa aagctgagct tatggcagtg attaatgtca
    18421 atgaagacag ttttaatgca aaaagtcgtg tgagtgaaga agactttgaa aaaaggctta
    18481 atgactttct tgctttaaag cctgcgtata tcgatatagg tgcggttagt tcaagacctg
    18541 ggagtgagta ttgtggcaag gaagaggaat ttaaaagact gaaaaaagta cttgacttaa
    18601 tttatgagaa aaattattac gaacaagcaa tttttagttt agatagtttt gatgaatatt
    18661 gtctagaata tgctttaaat aagggtttta aactcattaa tgatattaca agtttaagaa
    18721 atcttaatct agctaaactt gcaagtaaat atgaggcaaa atattgctta atgcacatgc
    18781 aaaacaatcc aaataacatg caagataatc cttcttatga agatttgctt gatgagatga
    18841 ctttgttttt taaagaaaaa cttgaacttt tagaaagttt tggagtaaaa gaaagtattt
    18901 tagatgtagg tattggtttt ggaaagagtg cggggcataa tatgatttta atcaaacact
    18961 tagagcattt tttgcaattt aataagcctt tacttatagg tgcgagtcgc aaaagtgtga
    19021 ttaatgcgta ttttcaaagc gagattaaag atcgtttagc aggaactttg tatttgcatt
    19081 taaaagcttt tgaaaatggt gctagtatta taagagtgca tgatttatat gaacataaac
    19141 aactttttgc tttagcgcag gcaatggata atataggagt ttagatgaaa aaagaagagt
    19201 atttagaaaa agttgcttta gcaaatttgt ggatgagggc atattatgaa aaagatgaac
    19261 ccttggctag cgatgaagaa tacgatgctt taatcagaga attaagtgtt tttgaagaac
    19321 aaaacaaaga tgaaatttca aaagactctc caacgcaaaa aatagctcct atcatacaaa
    19381 gcgagtttaa aaaaatagct catttaaggc gtatgtggtc gatggaagat gtgtttgatg
    19441 agagtgagct tagggcttgg gcaaaacgcg caaaatgtga aaaaaacttt tttatagagc
    19501 ctaaatttga tggagcgagt ttaaatttac tttatgaaaa tggtaaatta gtaagcggtg
    19561 ccactagggg cgatggcgaa gtgggtgagg atataacgct taatgttttt gagatagaaa
    19621 atatacctaa aaatatagcc tataaagaaa ggatagaaat tcgtggagaa gtggtgattt
    19681 taaaagatga ttttgagaaa atcaacgaaa aaagagccct tttaaatcaa agtttatttg
    19741 ctaatccacg caatgctgca agcgggagtt taaggcagct tgatacaagc atcactaaag
    19801 aaagaaattt gaaattttat ccttggggag taggggaaaa taccttaaat ttcaccaaac
    19861 acagcgaggt gatgcaattt atcagagagc ttggtttttt aaaagatgat tttgtaagac
    19921 tttgcgctaa tttagacgaa gttttaaaag cttatgatga gcttttagct ctaagagaaa
    19981 aaaaacctat gatgatggat ggaatggtgg taagagttga tgatcttgca ctttgtgaag
    20041 aattaggcta tacggtaaaa tttccaaaat ttatggcagc ttttaaattt cctgcacttg
    20101 aaaaaaccac gcgtttaata ggggtaaatt tacaagtagg aagaagtgga gtgatcactc
    20161 ctgtggcggt tttagaacct gtaaatttag atggggttgt agtaaaatca gccacccttc
    20221 ataattttga tgaaattgca agacttgatg ttaaaatcaa tgattttgta agcgtgataa
    20281 gaagtggtga tgttattcct aagatcacta aggtttttaa agagcgtaga gaaggtttag
    20341 agatggaaat ttcacgccct aaactttgtc ctacttgcca aagtgagctt ttggatgaag
    20401 gaactttaat aaaatgtcaa aatatagatt gtgaagatag acttgtaaat tctatcattc
    20461 attttgtttc taaaaaatgt cttaatatcg acggacttgg agaaaatata gtagaacttt
    20521 tatacaagca caaaaaaatc actacgcttg agagcatttt tcatttaaaa tttagtgatt
    20581 ttgaaggttt ggaaggcttt aaagaaaaga aaatcaacaa tcttttaaat gccatagagc
    20641 aagccagaga atgtgagctt tttcgtttta tcacggcttt agggatagag catattggcg
    20701 aggttgcggc taaaaaatta agtttaagtt ttggtaaaga gtggcacaag caaagctttg
    20761 aagcttatgc caatttagaa ggttttggag agcaaatggc tttaagtctt tgcgaattta
    20821 cgcgtgttaa tcatacaaga attgatgaat tttacaagct tttaaatttg aaaatagaaa
    20881 aacttgaaat caaaagtgat agtatgattt ttggtaaaac ttttgtgatt acaggtactc
    20941 tttcacgtcc aagagatgag tttaaggctt tgatagaaaa gcttgggggt aaggtaagcg
    21001 gctctgtttc taaaaagact gactatgtgc tttttggaga agaggcaggt tctaaactta
    21061 gcaaggctaa agagcttgaa gtaaaatgta taaatgaaag tgcttttaat gagcttgtta
    21121 aagaatagtt cttatatttt aacgctttta agcctttttg gctttttgct aacttggcaa
    21181 aggagtgctt tttctttatt ttttttaatt cctatttttt taacactttt ttgggaattc
    21241 tttttatttt taaagcttag aaaaaatatt ataaaagaag ctactttgat taagggaagt
    21301 ttgttttatc gtattagtat gggggatttt tatctttata tttttagctt ttttttggcg
    21361 atttttggac ttgtttcttt atttttaaat tttttaaatc ttgaaaaaat tgattttgtt
    21421 tttatattta taattttacc tttattgatg atatttttaa aaaaagaatt gcatttgcaa
    21481 tttatagata atgcttataa tgattttaga atagttgtta tcgctagttt ttttactgct
    21541 ttattttatg cattttatgg gctttttttt acttacaatg aacttttaaa tttagaac
//
LOCUS       DARGEM010000015        21177 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.015, whole genome shotgun sequence.
ACCESSION   DARGEM010000015 DARGEM010000000
VERSION     DARGEM010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21177
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.015"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            195..1529
                     /locus_tag="SFZ78_000452"
     CDS             195..1529
                     /locus_tag="SFZ78_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8211354.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            1542..2882
                     /locus_tag="SFZ78_000453"
     CDS             1542..2882
                     /locus_tag="SFZ78_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8211355.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGV
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            2914..4713
                     /locus_tag="SFZ78_000454"
     CDS             2914..4713
                     /locus_tag="SFZ78_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG8211356.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITVTLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEDIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            4726..6300
                     /gene="pckA"
                     /locus_tag="SFZ78_000455"
     CDS             4726..6300
                     /gene="pckA"
                     /locus_tag="SFZ78_000455"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG8211357.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            6310..7692
                     /gene="argH"
                     /locus_tag="SFZ78_000456"
     CDS             6310..7692
                     /gene="argH"
                     /locus_tag="SFZ78_000456"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG8211358.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(7714..8817)
                     /gene="ychF"
                     /locus_tag="SFZ78_000457"
     CDS             complement(7714..8817)
                     /gene="ychF"
                     /locus_tag="SFZ78_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG8211359.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(8814..10265)
                     /locus_tag="SFZ78_000458"
     CDS             complement(8814..10265)
                     /locus_tag="SFZ78_000458"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG8211360.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGASGAGVRMCVNYLIQILRKAK"
     gene            complement(10262..10858)
                     /locus_tag="SFZ78_000459"
     CDS             complement(10262..10858)
                     /locus_tag="SFZ78_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8211361.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(10877..11425)
                     /gene="apt"
                     /locus_tag="SFZ78_000460"
     CDS             complement(10877..11425)
                     /gene="apt"
                     /locus_tag="SFZ78_000460"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG8211362.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(11422..11754)
                     /locus_tag="SFZ78_000461"
     CDS             complement(11422..11754)
                     /locus_tag="SFZ78_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211363.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(11754..12191)
                     /gene="rpiB"
                     /locus_tag="SFZ78_000462"
     CDS             complement(11754..12191)
                     /gene="rpiB"
                     /locus_tag="SFZ78_000462"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG8211364.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            12358..12912
                     /locus_tag="SFZ78_000463"
     CDS             12358..12912
                     /locus_tag="SFZ78_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG8211365.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            12928..13716
                     /locus_tag="SFZ78_000464"
     CDS             12928..13716
                     /locus_tag="SFZ78_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8211366.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            13852..14580
                     /locus_tag="SFZ78_000465"
     CDS             13852..14580
                     /locus_tag="SFZ78_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8211367.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            14602..15381
                     /gene="peb1A"
                     /locus_tag="SFZ78_000466"
     CDS             14602..15381
                     /gene="peb1A"
                     /locus_tag="SFZ78_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG8211368.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            15383..16135
                     /locus_tag="SFZ78_000467"
     CDS             15383..16135
                     /locus_tag="SFZ78_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8211369.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            16146..16805
                     /locus_tag="SFZ78_000468"
     CDS             16146..16805
                     /locus_tag="SFZ78_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8211370.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            16913..17842
                     /locus_tag="SFZ78_000469"
     CDS             16913..17842
                     /locus_tag="SFZ78_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG8211371.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            18009..20120
                     /locus_tag="SFZ78_000470"
     CDS             18009..20120
                     /locus_tag="SFZ78_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG8211372.1"
                     /translation="MTQLSTKILWLFVATLGAICFGFLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFNGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSIAPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            20101..20298
                     /gene="kcuS"
                     /locus_tag="SFZ78_000471"
     CDS             20101..20298
                     /gene="kcuS"
                     /locus_tag="SFZ78_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG8211373.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEYMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(20338..20751)
                     /locus_tag="SFZ78_000472"
     CDS             complement(20338..20751)
                     /locus_tag="SFZ78_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8211374.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            20813..>21177
                     /locus_tag="SFZ78_000473"
     CDS             20813..>21177
                     /locus_tag="SFZ78_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211375.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGV"
BASE COUNT         6919 a         2824 c         3758 g         7676 t
ORIGIN      
        1 taaatcagtt cggcttgcgt atccctactt aagacttaaa aataaatccg aattataacc
       61 aaaggtatct ttatttttat tgaaatttac aaaaattcac atttttgatt taaatttgat
      121 tgttttcaat aaagcttaaa agtttttttg ctttaataat attttaaaat aatttttaag
      181 ttaaggttgt aacattgagt tctaaatttt caaaaatagg tttcatttta gcggtagcag
      241 gttcagcagt gggtttgggt aatgcttgga aatttccaac actagtaggt caaagtggtg
      301 gatctgcttt tatcttgctt tatataattc ttactttggg tgtaggtttt gtgatatttt
      361 tagctgagct tagcatagga aaaattagtg aaaaagatcc ggttaatgcc tatgaaaagt
      421 tagcaccttc aaataaaaaa gcttggtctt atgttggttt tactatggtg ggggcgattt
      481 taatagtttc tttttatacc ttggtgattg gctggatagt taaatatgtg tttttaagta
      541 tcactggaaa tttgcctatg gatctagaag taagtaaagc acagtttgga ttttttataa
      601 gtgaggattt tttaagtcag tttatttgtt ttactttggt ttttttatgt gttttttata
      661 ttgtttctaa aggtgttaag aatgggattg aaaagttaaa tgtttggatg atgccttcat
      721 tgtttatttt acttattttg atgcttgttt atgctattag caaagatggt tttataatgg
      781 cggttaaatt tctttttgta cctgattttt ccaaaatcaa cacttcaaac gttcttgaag
      841 ccttaggact tgcttttttt agtctttctt tgggcgttgg aacgattatt acttattctg
      901 ctagtctgcc tgataaaact aattttatta ccagtacttt aaatattatt tttatcaatc
      961 ttttagttgg tttattaatg ggtttggttg tttttacttt tatctttgaa tttggttaca
     1021 atcctaatca gcaaggacca ggacttgttt ttatttcctt agctacttta tttgaaaaaa
     1081 ttggagtgat tggttgtatt tttggagcag cgttttttat ttctttaatc tttgctggta
     1141 ttacttcagc tgtttcaatg atagagcctt tcacttttta ccttattaat acttttggta
     1201 tgagccgtaa aaaagctttg attttaatag gaattgttgt ttatatttta ggaatgttgt
     1261 gtattttatc ttctttaaaa agtactcagt ttggattttt tggaatgagt ttttttgatt
     1321 tgcttgatag tgtttcaagc aaggttatta tgcctttagg tggaattttg gcagctattt
     1381 ttgtgggatt tgtgatgaaa aaagaagctt taaaaatttt atttaaacct tatatgaggg
     1441 gtatattttt tgaactttgg tatgtgtttt tgagatttat ttcccctttg gctgttgtta
     1501 tagttatgat agccgctttt ttaaagtgag tttgaaaaat aatgagaaca tatttttcaa
     1561 aaatcggttt tgtattggct gttgctggtg gagccgttgg tttaggtaat gcttggaaat
     1621 ttccaacttt aagcgcagaa aatggtggtt ttgtttttgt gcttttatat ttgtttttta
     1681 ctttaactat aggatttagt atttttttgg ctgaagtggc tatgggacgt ttaagtaaaa
     1741 gtgatcttgc aaatgcttat tcaaatcttg ccataaaata tggtaataga tggcgatatg
     1801 gcggcgtttt tatgttaggt ggtattttta tcctctcttt ttatctagtt atcatgggat
     1861 gggttttaaa atatactgta gtgagtcttt attatcttcc taaaacttta gatgaagcag
     1921 caagtaattt tcagaattta attactacaa atttgacaag ttctgttttt ttcttcactt
     1981 tatctttttt tcttacttta ttgatagtat ctaaaggttt aatcaaaggg attgaaaaat
     2041 taaacgttgt tataatgcct agcttatttt taatgcttgt ttttatgttg ttttattgca
     2101 tgggatttaa gcaaggtttt gcaaatgctt tttcttattt attttatccc gatttttcac
     2161 attttaaatt cagctctatt gccgaagctt tagggcttgc attttttacc ttatgcttgg
     2221 gaataggttg tatagttaca tattcatcgg ccttggataa aaaaacaaat tttataaaaa
     2281 gttcagtgta tattgttttg attaatttat tgatttcttt tattatggga cttattgttt
     2341 ttacttttat ctttgaattt ggagccgatc cgcatactca aggagcagga attgtttttg
     2401 tatccttgat gagtttgttt aatcaacttg gagctttagg ctatattttt gcattttgtt
     2461 ttttcttagc actttttttt gctggtatta cttcagctat ttcaatgata gagcctttaa
     2521 ctttttatat gattaataac tatcaaattt ctcgtgttaa agctctattt ttaataggtt
     2581 tatttgtttt tgtttttgga atttgttgta tcttgtcatt aaatttaaat tttttttcta
     2641 tgtttagttt ttttggcaaa gattttttta ctttattaga taaattaact tcaaattttt
     2701 tacttccact tggtgttata gtatgctcta tatttgtagg tttttttatg aataaaaaac
     2761 aaatttataa aattttttct aaatttataa gtcgaaaaat tttcttaatt tggttgtttt
     2821 ttattcgttt tatatcgcct atagcaataa ttttggtaat gtgttatcaa atttttgtat
     2881 aataatgaaa aaatattttt ttaaggaaaa ataatggcta aaaaattcat cgatgtaatg
     2941 gatacaagct ttagggacgg ttttcagtct gtttatggag ctagggtttt aatggatgat
     3001 ttttttcctg cagtagaagc agcaaaagaa gcgggtatta ctcattttga atttggtggt
     3061 ggtgctagat ttcaaagctt gtatttttat cttaatgaag atgcttttac catgatggat
     3121 agatttaggg ctattgtagg aaaagatgct aatcttcaaa ctttagcaag aggagtcaat
     3181 accgttactt tagatactgg aaatagtgaa cttattgatt tgcatgcaaa actttttgca
     3241 aaacacggta ctacaacgat aagaaatttt gatgccctta atgatgtaaa taatttaaaa
     3301 tttagtggtg aatgtatagt aaaacatggg ttaaagcatg aaattactgt tactttaatg
     3361 gatttaccgt caaattgcaa aggtgctcat gatgtgcctt tttatgaaaa aattttaaaa
     3421 gaaattttaa cagcagaaat tccttttcat agtatttgtt tcaaagatgc aagtggaact
     3481 tctaatccaa ataaaattta taaaaccatt aaaatggcta gaaaaatttt acctcaagat
     3541 acacatatta gacttcatac gcatgaaacc gcaggggtga gtatagcttg ctatcttgca
     3601 gcgcttgaag caggggttga tggtattgat ttggctgcag ctcctgtaag tggtggaact
     3661 tctcagcctg atattttaac catgatgcat gctttaaaag gcaaagatta tgatttaggt
     3721 ggacttgaag aagaaaaaat tttaagatac gaagaagttt taaaagattg tttaaaagag
     3781 tattttttac cacctgaagc tactatggta aatccactta ttcctttttc tcctatgcca
     3841 ggaggagctt taacagcaaa tacacaaatg atgagggata ataatatttt agataaattt
     3901 ccacaggtca ttcatgctat gagagaagtt gtggaaaaag gtggatttgg tacttcggtt
     3961 actccagttt ctcaatttta ttttcaacaa gcatttaata atgttatgtt tgggccttgg
     4021 aaaaaaatcg cagaaggtta tggaaaaatg gtacttggtt attttggaaa aactccagtt
     4081 acacccgatg caaacattgt tgaacttgct tcaaaacaac ttaatttaga acccactaca
     4141 gagcttgcta ttaatatagc cgataaagat gagagtaaaa gcatagctta tactaaaacc
     4201 ttgcttgaaa aagaggatat agaaacgagt gaagaaaata tatttattgc agcagcttgt
     4261 aaagaaaaag gtatagcatt tttaaaagga gaggcaaagg taaatatacg caaattagct
     4321 agcatgccaa agcctatgag tgtagatgaa aacaaattta ctgtagctgt aaatggtaat
     4381 aaatatcatg tggaagtgag ttatggtttt gataaagatg ttaatgttaa gagtgtaaaa
     4441 aaagtagaag aaaataaaaa tattatttct tcaaattcaa caagttctgt cgatgctgaa
     4501 aatgaaattt tagcaggtat ttcaggtaat gtctttaaaa tttatgttaa cgaaggcgag
     4561 gaagtaaaat caggtcaagc tatcatggtt ttagaagcaa tgaagatgga gattgaggtt
     4621 aatgccccaa aagatggaat tattttagag ctttgtatta aaataggtga tactgttaat
     4681 gaaggcgaag tattagctat ttacaagaat taaagtgagg gaaaaatgaa aaaatttgat
     4741 aagttaggtt tggataatat aaaggaaatt tttcataatt taagttatga tgaattaaat
     4801 gctcatgaaa aagcaaataa tgaaggttta agcacggata atgatacttt ttgtgtagat
     4861 acagggattt ttacaggtag aagtcctaaa gataaatatt ttgtaaaaca agatccatct
     4921 agtaaatata tagcttgggg aaaggtaaat cagcctatta caaaagaatt atttgataaa
     4981 cttttaacta aagcaaagca agaattaagc ggaaagaaaa tttatgttca agatgttttt
     5041 tgcggtgctt ctttgcaaag tcgcaaagca gtaagatttg ttactgaaat tgcatggcaa
     5101 gcgcattttg ttaaaaatat gtttattcgc ccaagtcaag aggaacttga gaattttaaa
     5161 gcagatttta ttgtttataa tgcttgcaaa tgcatcaatg aagattacaa acaagatggt
     5221 ttaaattcag aggtttttgt gatctttaat gttgaagaaa atatagcggt tattggtgga
     5281 acttggtatg gtggagaaat gaaaaaaggt attttttcta tgatgaatta ttggttgcca
     5341 ctagaaaata aactttctat gcattgtagt gcaaatgtcg gagaaaaaga cgatgtggca
     5401 cttttctttg gacttagcgg tacaggaaaa actacgcttt caaccgatcc aaaaagaaga
     5461 ctcataggtg atgatgagca tggctgggat gatgaaggtg tgtttaattt tgagggcggt
     5521 tgctatgcaa aaacaatcaa tcttgatcct gaatatgagc ctgaaattta tggagccatt
     5581 aaaagaaatg cacttttaga aaatgtagtt ttaagagctg ataagagtgt tgattatgct
     5641 gatgcctcaa aaacagaaaa cacgagagtt tcttatccta tagagcatat tgaaaatcat
     5701 gagcctagtc taaaagcagg gcatccaaaa aatattatat ttttaagtgc agatgctttt
     5761 ggaattttac ccccggtgag caaactaagc aaagagcagg ctatgtatta ttttttaagt
     5821 ggctatacag caaaagtagc tggaactgag cgcggtataa cagagcctca agcaactttt
     5881 tcagcttgtt ttggagaacc ttttatgcct ttacatccaa cggtttatgc gagattgctt
     5941 ggtgaaaaga ttgaaaaaca tgaagttaat gtttatcttg ttaatacggg ttggagtggc
     6001 ggaagctacg gtgtgggtaa aagaatgagc attaaggcta ctagggcttg cattaatgct
     6061 attctagatg gaagtattac aaaatgcgaa tttgaaaatt ttgaagtgtt tgatttagct
     6121 attccaaaag ctttagaagg tgtagaaagt gtacttttaa atcctataaa tacttggtta
     6181 gataaaaatg cttatattgc aacaagagat aaattagcac atatgtttat acaaaatttt
     6241 aaacgttatg aagatgtcaa agaaggcatt gaatttagca aatttggacc aaaaatttaa
     6301 ggcatttaaa tgaaaaatga aatgtggtca ggacgtttta gtgatgcaag tgatgagctt
     6361 ttaaaagaat ttaatgcaag tttaaatgta gataaaactt tgttcaatga agatatacaa
     6421 ggttctatag cacacgctac aatgcttgaa agttgtggta ttttaaaaaa agaagaatta
     6481 gatgctatta taaaaggttt agagcaggtt agaagtgaaa tagagcaagg taaatttatt
     6541 tttgatatta aagatgaaga tattcatatg gccgtagaaa agcgtttaag cgagattata
     6601 ggtagtgaaa ttggtggaag acttcatact gcaagaagta gaaatgatca agtggctact
     6661 gattttaaac tttttgtcaa aaaatctcat attgaactta taaagctttt aaaagaattg
     6721 attcaaacca tgctcgaaca tgctaaagtg cataaaaaaa ctattatgcc aagttttaca
     6781 catttacagc acgctcagcc tgtgagtttt tctttttata ttttagctta tgcttttatg
     6841 ttaatgcgag atattaagcg tttacaaaat agcctagaac tcgcagactt ttcgccactt
     6901 ggatcttgtg catgtgcagg aacaagctat agaaccaatc gtgagttgag tgctgaaatt
     6961 ttaggattta aagatattat gctaaatgct atggatggag tgagtgatag ggattttgct
     7021 cttgatttgc tttatgatat agcagttatt tttacacaca catcaagact ttgcgaagaa
     7081 atgatcttat tttcaagttc ggagttttct tttataacta taagtgatag cttttcaaca
     7141 ggaagttcta ttatgcctca gaaaaaaaat cctgatgttt gtgagcttat acgtggaaaa
     7201 acagggcgtg tttatggaaa tttgatttct cttttaacta taatgaaagc tttaccttta
     7261 gcctataata aagatatgca agaagataaa gaagggattt ttgatagtgt aaaaaccgct
     7321 aaagatagct taatcatctt aaatgcaatg ctaaaagaaa tacaaattaa taaagaaaat
     7381 atgcttaatg cttgtaaaaa aggtcattta ttggctaccg atttggcaga ttatttggtg
     7441 cgtgaaaaaa atattccttt tagaaaagca cattttatag tgggaaatgt tgttgcacaa
     7501 gctgaagcac aaggtattga tataagtgaa attaaagatc tttcaaaaat agatcctgta
     7561 tttgatgaaa aagctatgga acttttaaat tttgaatttt ctttaaattc taagcaaagt
     7621 gaaggctcaa gttctattgc aagcgtagaa aagcaaattc aaattttgga aggttttatt
     7681 caaaatttat aaatattgtt taggctattt tgcctaaaca ttgaatctaa agtgcattac
     7741 atcgccgtct aaaacgatat agtcttttcc ttcaaggcgt agctttcctg cttctttggc
     7801 gccattttcg cctttgtatt ggatatagtc ttcataggaa ataacttcag cttttataaa
     7861 gcctttttca aagtcattat gaatcacgct tgctgctttt ggtgctttcc agcctttttt
     7921 gattgtccaa gaacgcactt caactacacc agcggtaaaa taactgatca gtccaagctt
     7981 agcaaaagca gtgcgtatga tttgatcaag accgctttcg ttaactccta gagagcttaa
     8041 aaattcatga ctttcttcat cgcttaatcc tactaattct tcttcgattt ttgcacaaag
     8101 cttgataact tcatgatcat tttttttagc atattctttt aaagctttta cataatcatt
     8161 atcttcacta ataccatttt catcaacatt tgcaccataa atcacctctt tagcagaaag
     8221 cagtcttaat tccttgatta gggcttgata aatttcgctt tccttttcag gataagaact
     8281 tgcagctaag cctttgttta aatgatcaag taaggaattt gcaagttcga gactttcttt
     8341 ggcacccttt tgattggctt tggcttcttt ggtgagtttt tctatttttt tactcagttg
     8401 ctcaatatct gctaaaataa gctctgtatt gataatttct acatcacgta aaggatcaac
     8461 tccaccttca acatgggtaa tattttcttc atcaaaacaa cgtactatat gcaaaataac
     8521 ctcagtttca cgtatatttg aaagaaattt atttcccaag ccttcgcctt tacttgcgcc
     8581 tttaacaagt ccagcgatat ctacaaattc tattaaagaa tgcataattc tttcaggttt
     8641 tactatttta gcaagttcat taagtcttaa atcaggaact tcaaccatgg ctttattagg
     8701 ctctatggtg cagaaaggat agtttgcact ttgggcattt tgtgctttag ttaaagcatt
     8761 aaaagttgtt gatttgccaa catttggaag tcctactata cctacgctta aactcattta
     8821 gctttcctta aaatttgaat taaataatta acacacattc taactccagc tccacttgcg
     8881 ccaaaactag aatatcccca agatttttct gtataagcag gtcctgctat gtcaagatgt
     8941 agccatttat ctttatattc tttacgaata aatttatcta aaaataaccc tgcggtaatt
     9001 gcacctccgt agcgactaga ggcagtatta ctaacatcgg caatatttga ttttataagt
     9061 tctcttaagt gagggttgaa atgtaagatt gtggtatatt ctccgctttt tttagagctt
     9121 agataaaaat cattttgcaa ttcctcatta tttcccataa tagcacttgt aaattctcca
     9181 agtcctacaa cacaagctcc agtaagagtt gccatatcga taagtaaatc aggttttaaa
     9241 tcctgtgcaa aagaaagaca atcagctaaa accaagcgtc cttctgcatc tgtatttctt
     9301 acctctatgc ttacaccttc acgactgatt aacacatcat caggcttata agcattgccg
     9361 cctatcatat tttcagttgc gcccaaaatg caatgcactt ctaaatctaa agcaagttca
     9421 gctacggctt ttatgattcc cattactgct gctgcaccgc ttttatcagc tttcattgta
     9481 agcataaaat cagctggttt taagcttaat ccaccgctat cgtaagttaa gccttttcca
     9541 acaaatacaa cacgtttttt tgcatttttg gctttatagc ttagatgaat gaggcgtggt
     9601 gggtgtatcg aggcgcgatt taccgctaaa aaggcattca ttttttcttt ggctaagaat
     9661 ttttcatcat aaattttaca aataatgttt ttattttctt tagctaaatt ttgcgcatct
     9721 tctgccattt ttaaaggggt gtaaatttca ggaatttcat tgactatatt tttagtaaaa
     9781 tttgtagcat tagctaaaat ttctccacgc tctaaaccta tcttagcttc atctttatta
     9841 aatttcttac catttaattc ttcgcttgaa ataataaatt tttccaaagt acttgttttt
     9901 ttctcgcttt tatatttgtc aaatttataa gctccaaaaa gtacgccttc aactaaagat
     9961 gcaaaacttc taactacaca atctcctatt atgctaggaa gttttacgct tttaatatta
    10021 agtttctcaa gagttttata tgctgtgcaa agacttaatc ttatatcctc ataagcaaga
    10081 cttttaagct ctaaataaag ctttttattg tttaagtcta ataatgcacc ttcgcctttg
    10141 taattattaa gtttaaaaaa atctttttct ttgttaaaaa tttttaaatt tttatcctgt
    10201 ataaaaacaa gttcaaagtc tgcttttata gcatctagtt ttttatcgtt taattcaaat
    10261 ttcatgattt tttcctttta tctttaagta tagctttttc catttgttta aaaccaaata
    10321 ataaaaggga taaaaaagct ataataataa tggctgcata ataccaatgt tcttcagccc
    10381 aagtcaccat cttccaaatt tgttctccaa aataccaagc taaaagtata gtgattgatg
    10441 cccaaaccca agcactaaaa agattgataa tagcaaattt ttttgcacta taacgcgtga
    10501 ttcctatact cataggtata atggttctaa aaccatacat atagcgttgt ataaaaataa
    10561 taggccaacc aaaacgttgt aaaagtaggt gtgctactgc aaatttacgc ctttgagttt
    10621 ttaatttttt ttgtatgtag cgtttattat atcttcctat atagaaataa atttgatcac
    10681 ctacaaaacc accaagtcct gctataaata taacaaaacc taaatttaca tgtccttgat
    10741 gagcaaaaat acctgctaaa attaaagcta actctccttc taaaatgcac cataaaaaaa
    10801 taataatata agctagatct ttgtattggt aaagtaaatt ttttaaaaat tcttccattt
    10861 gtacctttct atagttttaa atttctaaaa cactataaac tgaagtaagt ttttcaagtt
    10921 tatttgctcc atttaaatct ttaagattca ttaaaaaaca agcttcaaca catttagctc
    10981 cagctttttg aatgagttca tatgaagcta tagctgttcc gccagttgct attaaatcat
    11041 ctacaagtaa aactcttgca ttttgaatat ttttaaatgc atctttatga agttctactt
    11101 tatcgctgcc atattcaaga tcgtattcgc agctaaaggt ttcaaaaggg agttttccag
    11161 gttttctaat aggcacaaaa ggaagattaa gttttgcaca aatcatagat gcaaagataa
    11221 atcctctgct ttctgttcct gctatgaagt ctagattgta atctttgtag cgttctttta
    11281 aatgtctaag tagaaaattt aaagcttctt tgttatttag tagagtggtg atatctctaa
    11341 aaataattcc tttttttgga aaatcaggaa taatcctaat gctatcaagc agatattttt
    11401 tttcttcttg tgttagtttt atcataataa tgcctcgatt tttgcttcta attctttaat
    11461 tctttgtctt agtttgtcat tttccaagcg atattgagaa tttctggttc ttaaagatgt
    11521 aaggtctgct ttgattttat taagctcttc tgtgagtata tctatatttc caaggcttct
    11581 ttgaagttga atttgtagtt ttctaatgac aatctcagta tcatcaagat tgtttttgat
    11641 aaaatctttt gatgtttttt ctttattaag tagagtttta tagtaaaaca acattacaat
    11701 aagatagata gttgcacaaa tcaatatagt taaaacaagc cagtttgtaa acattatatt
    11761 tttacctcaa ttttttgaat tctttgcata tgtctccctt cttcaaaagg agtttgaatg
    11821 aatttttcta taatatctat agctaattca accccaatta atcttccgcc taatgccaaa
    11881 acattggcat cattatgcct tcttgcaagt tctgcactta agctttcgtg gcataatgca
    11941 caacgaatgt ttttatgacg atttgctgca atagaaattc caattccact tccacaaata
    12001 agaatgccaa agctccgttt gtttattttt tcggcaagta aatgcgcata atcaggataa
    12061 tcgcagcttg cgcaagtgtt tgttcctaaa tcgttaaaaa ttatattttt ttcttttaaa
    12121 aatacgcaaa ttttttcttt taattcaaaa ccagcatgat cactagcaat ataaattttt
    12181 tccctaagca ttggtttcct aaattactat ataaaataag ataaaaacct aatcttatca
    12241 tattaaatca taaaaacagc ttttctttgt tttaaaaata agctttattt ttctttatat
    12301 atgttagaat catgtgacaa gaaaaataaa atttcaataa attaagagga gaagaaagtg
    12361 aagctcatac tcataggatc ttcaacaggt ggtcctaatc agcttaaatt tcttttaaag
    12421 gatattgatg taaaaaatac ttgtgtagtt atagctcagc acatgagtgc cagttttatt
    12481 ccatcttttg tggggcaatt taataaagaa gcttttagtg aagtgtgctt attgaacgat
    12541 aaagagatat taagcaataa aatttatatt tgccctaaaa atactatttt atctggaaat
    12601 ttaaatattg tagccgcttg gcaagatgtg gcttcaagct ttaaaccgag tgtggattta
    12661 ctttttcatt ccgctgtttc tttggcaaaa acaaataaaa tacttgctat tattttaacg
    12721 ggcatgggag atgatggcgc aaaaggttta tttgagcttt ataaaacagg agttagatgt
    12781 ttatgtgaga atgaagcaga tagcgtcgtt tatggtatgc caaaaagagc aaaagatatg
    12841 aatccgcatt taaaacctat gagcttaaaa gaaattaaaa aagaaattgt aaattttatt
    12901 gatcaggatt aataaaagga aaattgcatg gaaaaaaaaa taactcctag cgaattggaa
    12961 cttaatgaat ttataaaaat tatcaacgaa atgagtggta ttgatttaac cgataaaaaa
    13021 aatatactag ctttaaagtt gaataaattt cttgaaggaa ctaatactaa aaatttttcc
    13081 gaatttttgg gaaaattaaa aagcaataga caacttaaac aagaaacttt agattttgta
    13141 accataggcg aaacttattt tttaagagaa ttggctcaat tgaaagaaat aatttattat
    13201 gccaaaagct tagaaaagag agtaaatatc ctaagcgccc cttgttcaag tggagaagaa
    13261 gtatattctt tggcattatt ggctgcacag aattttatta aagatatgta tattttaggc
    13321 gttgatatta attcaagtgt gattgaaaaa gcaaaacttg gaaaatatca aggaagaact
    13381 ttacagcgat tgagcgagag tgaaaaaaga aggttttttt tagaaagcga agataaattt
    13441 tatactatta ataaaaatga gctttgtact tgtaaatttg aactttgcaa tgtttttgaa
    13501 gaaaaatttt caagattggg aaaatttgat attatagctt ctagaaatat gattatttat
    13561 tttgatcatg aatcaaaact aaaacttatg gagagatttc atagaatttt aaatgataaa
    13621 ggaaggcttt atgttggcaa tgctgattta attccagaga ctatttattt taaaaagatt
    13681 ttctctccaa gaggtgttta ctatgaaaaa gtataaattc taaaaattac taaaagttac
    13741 actttggaaa tttattagta aaaataagtt acattttgaa gtagttttct ttatttaatg
    13801 ataaaataat ttcaattaat tttatattta gctaaaaata aaggaaaaaa cttgattgaa
    13861 ttaaaaaatg taaacaaata ctacggaact catcatgttc taaagaatat taatctttct
    13921 gttaaagaag gtgagaagct tgttattata ggtccaagtg gaagtggaaa aagtacaact
    13981 atccgttgca tgaatgggct tgaagaagtt agttcaggag aggtcgtagt taacaatctt
    14041 gttttaaatc ataaaaataa aattgaaatt tgccgaaaat attgtgcaat ggtttttcag
    14101 cattttaatt tatatccaca tatgacggtt ttgcaaaatt tgaccttagc tccaatgaaa
    14161 cttcaaaaaa aatctaaaaa agaagctgaa gaaacagctt ttaagtattt aaaagttgta
    14221 gggttgctgg ataaagcaaa tgtttatcca gcaacccttt caggtggaca acaacaacgc
    14281 gttgctatag caagatcact ttgtactaaa aaaccctata ttttatttga tgaacctact
    14341 tcagcccttg atccagaaac catacaagag gttttagatg taatgaaaga aatttcacat
    14401 caaagcaata ctaccatggt ggttgttaca cacgaaatgg gttttgcaaa agaagtagca
    14461 gataggatta tttttatgga agatggtgct attgtggaag aaaatattcc tagcgaattt
    14521 ttctcaaatc caaaaactga aagagcgcga ctctttttag ggaaaattct taaaaattaa
    14581 ccaaaattga aaggagaaaa aatggttttt agaaaatctt tgttaaagtt ggcagttttt
    14641 gctctaggtg cttgtgttgc atttagtaat gctaatgcag cagaaggtaa acttgagtct
    14701 attaaatcta aaggacaatt aatagttggt gttaaaaatg atgttccaca ttatgcttta
    14761 cttgatcaag caacaggtga aattaaaggt ttcgaagtag atgttgccaa attgctagct
    14821 aaaagtatat taggtgatga taaaaaaata aaactagttg cagttaatgc taaaacaaga
    14881 ggccctttgc ttgataatgg tagtgtagat gcagtgatag caacttttac tattactcca
    14941 gagagaaaaa gaatttataa tttctcagag ccttattatc aagatgctat agggcttttg
    15001 gttttaaaag aaaaaaatta taaatctcta gctgatatga aaggtgcaaa tattggagta
    15061 gctcaagctg caactacaaa aaaagctata ggtgaagctg ctaaaaaaat tggcattgat
    15121 gttaaattta gtgaatttcc tgattatcca agtataaaag ctgctttaga tgctaaaaga
    15181 gttgatgcgt tttctgtaga caaatcaata ttgttaggtt atgtggatga taaaagtgaa
    15241 attttgccag atagttttga accacaaagt tatggtattg taaccaaaaa agatgatcca
    15301 gcttttgcaa aatatgttga tgattttgta aaagaacata aaaatgaaat tgatgcttta
    15361 gcgaaaaaat ggggtttata atatgaatga aagtgtaggt tttgttgaac atttaagaca
    15421 aattcttact tcttggggtt tatatgatga aaatagtata agcccttttg cggtatggaa
    15481 atttttagat gctttggata ataaagatgc ttttattaat ggttttattt atactttaga
    15541 agtaagcatt cttgctttgc ttatagctac aatttttgga actataggcg gagttatggc
    15601 tacaagtaga tttaaaatta tcagagccta cactagaatt tacgtagagc tttttcaaaa
    15661 tgttcctttg gtaatacaaa ttttcttttt gttttatgcc ttgcctgttt taggtataag
    15721 gcttgatata tttactattg gtgtattggg tgttggggcg tatcacggag cttatgtaag
    15781 cgaggtggtt agaagtggaa ttttggctgt gccaagaggt cagtttgaag cttctgcgtc
    15841 tcaagggttt acttatattc aacaaatgcg ttatattata gtacctcaaa ccattagaat
    15901 tattttacca ccgatgacaa atcaaatggt aaatttaatt aaaaatacct ctgtattgct
    15961 tattgtaggt ggagctgagt taatgcattc tgctgatagt tatgcagctg attatggaaa
    16021 ttatgcgcca gcttatatat ttgcagcggt tttatatttt ataatttgct atcctttggc
    16081 ttattttgca aaagcttatg aaaataaatt aaaaaaagca catttaacga gataaagggt
    16141 tgttaatgga aaatgttttt aatgcgcaaa atattgaatt tttaatgcaa ggtttatttc
    16201 tgacattaaa aatagccttg gcaacttgta ttatttcgat tgtttttgga acttttttag
    16261 ctataactaa aaattatggg gatagattaa gtaaattttt agcagcttgc tatatagata
    16321 tttttagaaa tactccttta ttattatgga tgcttgcagc ttgttttgtt ctacctgtat
    16381 tttttggaca atttcctcaa gctttttggg gtactatagg attttcactt tatacgagtt
    16441 cggttatggc tgaaattatt agaggtggat taaattctat accaaaaggt cagtttgaag
    16501 cagcttattc tcaaggtttt ggtaaatttt ttactctttt ttatattatt ttaccacaaa
    16561 cttttagaaa aataatacct gctttattat ctcaaattgt aaccactgta aaggatacag
    16621 cttatttagc gggtttaggt atagctgaac ttacttataa ttcaaaaact atattggcaa
    16681 aactaacaag ttttgaagaa attttagcga tgataggtgt tgttgcggga atttatttta
    16741 taatatgttt ttcactttct atgttggtaa gatattatgc caaaaagaca gcttacattt
    16801 cttaaaaaag cttatatttt tatataagct ttttaaattt acagcagttt ttaacatttt
    16861 ttttattaaa atcttttgta ttaattcata attttattga ttaaggtttt ttatgcgagg
    16921 ttataaaatt ttttcaggct cagctaatgt cgaatttgca agacaagttt ctaaatatct
    16981 ctccctgcct ttaagtgatg ctggagtaaa gcggtttagt gatggagaga ttagtgttca
    17041 aattgatgag agtgtacgcg gaaaggatgt ttttattatt caaagtactt gcgctcctac
    17101 aaacgataat ttaatggaac ttttaattct tacagatgct ttgcgtcgct caagtgcaaa
    17161 ttcaattacg gctattatcc catattttgg ctatgcgaga caagatagaa aagcaaatcc
    17221 tagagtgcca attactgcta aacttgtggc taatttgatt caagcagctg ggattgatcg
    17281 cgtagctacg atagatttgc atgcaggaca aattcagggt ttttttgata ttccagtaga
    17341 taatctttat ggaagtatag tttttaatga ttacattaaa gccaaacatt ttaaaaatgc
    17401 tattatagga agtccagata tagggggtgt tgcaagagct aggagtgttg caaagcattt
    17461 aggacttgat atagttatag ttgataagcg tcgtgaaaaa gccaatgaaa gtgaagtaat
    17521 gaatattatt ggagatgtaa aagataaaga agttatctta gtggatgata ttattgatac
    17581 tgctggcact atagttaaag ccgcggaagc tttaaaagaa aaaggtgcaa aatctgttat
    17641 ggcttgctgt actcatgcag ttttaagtgg aaaagcctat gagagaatag caagtggagt
    17701 tttagatgag cttgtggtaa cagatactat acctttaaaa gagcaattac caaatattaa
    17761 agtattaagc gttacacctg tttttgctga agtaatacgt cgtgtttatc ataacgaaag
    17821 tgtaaattct ctctttattt agattaaaaa agcttaaaga ttatttttaa gcttttcatt
    17881 tttatgctac ttaaagaaac aaaaaacata tattttttta aaaatgtgaa aaaactaaac
    17941 atctttctat ataatttaat ctataaatct gctattcttt gaaaatattt tattttctta
    18001 ggagaaatat gactcagtta agtactaaaa ttttatggtt gtttgttgca actttaggcg
    18061 ctatttgttt tggtttttta gctttacaaa atggcgaaag tgtatcagcg atttatttgg
    18121 tggttgctgc tgtatgtatt tatatgatag gatatagatt ttatgggcgt tttgtagctt
    18181 ataaggtttt agaacttgat aaaaatcgtg caacaccagc acttgtagaa aatgatgggc
    18241 gtgattttgt gcctacaaat aaagctgtat tatttggaca tcattttgct gctattgcag
    18301 gagcaggtcc attagtagga cctatcttgg ccgctcaaat gggatatttg ccttctatgc
    18361 tttggatttt agtaggagga gttttagcgg gtgctgtgca tgattttgtt gttcttttta
    18421 tatctactcg tagaaaaggt agaagtcttg gcgagatgat taaggatgag atgggtaaat
    18481 ttacaggtgg agttgctatg gtggcgattt ttggcattat gcttattatt attgccattt
    18541 tagctatggt ggttgtaaaa gctttagcag aatctccatg gggtttattt actatcgcaa
    18601 tgactattcc tatagcaata tttatgggca tttatatgcg ttttatccgt ccaggtagag
    18661 taggggaggc ttctataata ggttttgtgc ttttaatttt ggctattcat tatggtagcg
    18721 ttatagctgc tgatccttat tgggctaaaa tatttacttt agaagctcca actttggcaa
    18781 ttgttatgat ggcttatggt tttattgctt ctgttttacc tgtgtggttt ttacttgctc
    18841 caagagatta tctttcaact tttttgaaaa tcggtgttat tgtggtaatg gctgtagcta
    18901 ttgttttggt tgctcctgat ttacaaatgc caaaagcaaa tactcagtat tttaatggaa
    18961 caggtccagt atttgcaggt ggagtgtttc catttttatt tattaccatt gcttgtggtg
    19021 cgatcagtgg ttttcatgct ttgatttcta gtggaactac tcctaaaatg cttgaaaacg
    19081 aaactcatac tttggctgtt ggatatggct ctatgcttgc tgagagtgct gtggcgatta
    19141 tggctttaat ttgtgcttgt attttacatc caggtcttta ttttgctata aattcaagct
    19201 ctgctttgat aggaacagat gttgtaaatg tagcacaaac tatttcaagt tggggattta
    19261 gtattgctcc tgaagaaatt actactttaa ccacaaatat aggagagcat actatacttt
    19321 caagaacagg gggagccccg acttttgcta taggtgtagc tttgatcttg catgaacttt
    19381 ttggcggcgt ggatttgatg gctttttggt atcattttgc tatattgttt gaagctttat
    19441 ttattttaac agcggtggat gctgggacaa gggcttgtcg ttttatggtg caagatatat
    19501 tgggtaatgt ttataaacct ttaggagata ttcataatta tccagctgga cttttggcta
    19561 cggctttaag tgttgcaggt tggggatatt ttctttatca aggcgccatt gatcctaagg
    19621 gaggaattta tacactttgg cctctttttg gcgtgagcaa tcaaatgctt gcgggtatgg
    19681 ctttgcttct tgctacaact atacttgtaa aaatgggcaa ggcaagatat acttgggtta
    19741 ctttagtacc tgcggtattt gtcttagtgg caactctgta tggaggaatt caaaaaatta
    19801 tgccttatga agaaggcaat aaaatagcaa atgcggtaag tcatgtagcc gccgttagca
    19861 tacaaagtca aaaaattaaa gatttagaat ttaaattaaa taatactaaa gatgaaaaag
    19921 aaatttctac aattagaaaa gaaatttcaa tagccactca aaataaagtt ggaaatttac
    19981 ttaatgcaat tctttgtgtg ttctttatga tagctacctt gcttgttata atttcttgta
    20041 taggaatttg cttaggtaaa attaaaattc ctcttaaaga aactaagtat attaagattg
    20101 atgaatttca aaaaatttaa gtattattat gaaaaagccg aaaggttttt tcatcccttg
    20161 gtgggacttt ctagttatga taagtattta gaatacatga aacaaaaaca tccaggaaaa
    20221 attccaaaaa ccagagggga atttttcaaa gaatgtctag ataaaaaata taatagtggc
    20281 ggtttaaata aatgctgata agcttaaagg ataaagtttt atcatacaaa ataagcttta
    20341 agcatttaaa aagccatgaa ttcttttaag ttcttcacta ataggttttt tctttccatc
    20401 tcttgtaaca cttacataag ttactaaagc cgaagttaca ttaatgcaag aagtacaacc
    20461 ttgagaatcc actctttgag ctgtgacttc tacttcaacg ctgattgaag tgttgcccac
    20521 atttacaact ttagagtaac aagaaattat atcgcctata aaaacaggtt ctttaaaaac
    20581 tactttatcc atagagatgg ttacaacgcg ttcaggagaa agttctcttg ctgcgatagc
    20641 tcctgctaaa tcgatttgtg aaagtatcca tccgccaaaa atatttcctg ctggatttgt
    20701 gtcacttggc atagctacaa tttttaattt tggttctccc atatctctca tttttactcc
    20761 ttattttaaa aaatgaatta taattaaaaa agttaaaaag gagaataaaa gcatgaataa
    20821 ttttaaagaa atagctaaat tggttagaaa atacaaagaa agaaataatg cgttatatga
    20881 gtttttagac aaagaagatg tgggcgagta ttttagatct ttgatttctt taagtgagtt
    20941 aaaacaagat aagacaacta tgctagccat acttaggcgt ttgattgatt taaaagaaga
    21001 aaatttagtt caagagtgga aaaaaaacaa ctttaaggaa gataagatta tagagttaaa
    21061 acataagttc tatgaagagg ttagaaagtt ttatgaaaaa gaacatcaaa atttaattaa
    21121 tgaaataaaa gagaaaaaac ttttaaataa tttttatcag tccttaatac aaggagt
//
LOCUS       DARGEM010000016        18542 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.016, whole genome shotgun sequence.
ACCESSION   DARGEM010000016 DARGEM010000000
VERSION     DARGEM010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18542
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.016"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            98..520
                     /gene="cgb"
                     /locus_tag="SFZ78_000474"
     CDS             98..520
                     /gene="cgb"
                     /locus_tag="SFZ78_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG8211376.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(540..2171)
                     /locus_tag="SFZ78_000475"
     CDS             complement(540..2171)
                     /locus_tag="SFZ78_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG8211377.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSLQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(2221..3516)
                     /locus_tag="SFZ78_000476"
     CDS             complement(2221..3516)
                     /locus_tag="SFZ78_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211378.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMIMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            3603..4400
                     /locus_tag="SFZ78_000477"
     CDS             3603..4400
                     /locus_tag="SFZ78_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8211379.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKNSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            4488..4706
                     /gene="infA"
                     /locus_tag="SFZ78_000478"
     CDS             4488..4706
                     /gene="infA"
                     /locus_tag="SFZ78_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG8211380.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            4878..4991
                     /gene="rpmJ"
                     /locus_tag="SFZ78_000479"
     CDS             4878..4991
                     /gene="rpmJ"
                     /locus_tag="SFZ78_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG8211381.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            4994..5359
                     /gene="rpsM"
                     /locus_tag="SFZ78_000480"
     CDS             4994..5359
                     /gene="rpsM"
                     /locus_tag="SFZ78_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG8211382.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            5369..5761
                     /gene="rpsK"
                     /locus_tag="SFZ78_000481"
     CDS             5369..5761
                     /gene="rpsK"
                     /locus_tag="SFZ78_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG8211383.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            5789..6415
                     /gene="rpsD"
                     /locus_tag="SFZ78_000482"
     CDS             5789..6415
                     /gene="rpsD"
                     /locus_tag="SFZ78_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG8211384.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            6428..7441
                     /locus_tag="SFZ78_000483"
     CDS             6428..7441
                     /locus_tag="SFZ78_000483"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG8211385.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            7445..7798
                     /gene="rplQ"
                     /locus_tag="SFZ78_000484"
     CDS             7445..7798
                     /gene="rplQ"
                     /locus_tag="SFZ78_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG8211386.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            7971..8870
                     /gene="hisG"
                     /locus_tag="SFZ78_000485"
     CDS             7971..8870
                     /gene="hisG"
                     /locus_tag="SFZ78_000485"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG8211387.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESHACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            8878..10164
                     /gene="hisD"
                     /locus_tag="SFZ78_000486"
     CDS             8878..10164
                     /gene="hisD"
                     /locus_tag="SFZ78_000486"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG8211388.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            10161..11219
                     /gene="hisB"
                     /locus_tag="SFZ78_000487"
     CDS             10161..11219
                     /gene="hisB"
                     /locus_tag="SFZ78_000487"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG8211389.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            11216..11803
                     /gene="hisH"
                     /locus_tag="SFZ78_000488"
     CDS             11216..11803
                     /gene="hisH"
                     /locus_tag="SFZ78_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8211390.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            11800..12531
                     /gene="hisA"
                     /locus_tag="SFZ78_000489"
     CDS             11800..12531
                     /gene="hisA"
                     /locus_tag="SFZ78_000489"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG8211391.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            12516..13454
                     /locus_tag="SFZ78_000490"
     CDS             12516..13454
                     /locus_tag="SFZ78_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG8211392.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            13455..14222
                     /gene="hisF"
                     /locus_tag="SFZ78_000491"
     CDS             13455..14222
                     /gene="hisF"
                     /locus_tag="SFZ78_000491"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8211393.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            14224..14847
                     /locus_tag="SFZ78_000492"
     CDS             14224..14847
                     /locus_tag="SFZ78_000492"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG8211394.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLDRLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAAIVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(14873..16033)
                     /locus_tag="SFZ78_000493"
     CDS             complement(14873..16033)
                     /locus_tag="SFZ78_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG8211395.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(16059..17165)
                     /locus_tag="SFZ78_000494"
     CDS             complement(16059..17165)
                     /locus_tag="SFZ78_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG8211396.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            17288..18403
                     /locus_tag="SFZ78_000495"
     CDS             17288..18403
                     /locus_tag="SFZ78_000495"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG8211397.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            18400..>18542
                     /locus_tag="SFZ78_000496"
     CDS             18400..>18542
                     /locus_tag="SFZ78_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8211398.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLS"
BASE COUNT         6990 a         2802 c         3045 g         5705 t
ORIGIN      
        1 tttaaattta tatttttgag cataatttta acacaagtca atttttttct cctttttaag
       61 atataaaata tctcttttac aacaaaaagg agaaactatg acaaaagaac aaattcaaat
      121 catcaaagat tgtgtgccta ttttgcaaaa aaatggagag gatttaacca atgagtttta
      181 taaaataatg tttaatgatt atcctgaggt aaaacctatg tttaatatgg aaaaacaaat
      241 ttcaggagaa caaccaaaag ctttagcgat ggcgatttta atggcagcta aaaatataga
      301 aaatttagaa aatatgagaa actttgttga taaagttgcc ataactcatg ttaatttagg
      361 ggttaaagaa gagcattatc ctatagttgg agcttgcctt ttaaaagcta ttaaaaatct
      421 tttaaatcct gacgaagcta ctcttaaagc ttgggaagtt gcttatggaa aaattgctga
      481 attttatatc aatatagaaa aaaagctcta tgataaataa tataagccca ttttgggctt
      541 taatcaaatt tttctactaa atttttagct aattccttta tattctcacc ctttaattcg
      601 ctgatttcac cattttgagc caagaaaatt ctatcagcac tatcaaaata tgcatcatca
      661 tgtgtgatag caaagattgt tttaccttgc tcttttagca aaggtaaaag ttttttataa
      721 aaaaatcttc taaaaacagg atcttgatca gccgcccatt catcaagcac taaaatatcc
      781 ctttcttcaa gcaaggctat aagcatagct aaacgctttt tttgccctgt agaaagtttg
      841 gttaaggtca gttcattatc tttgacactt gttttatctt taagttctaa aaactccaac
      901 caaaaagcaa ttttttcttc gcttgcaaaa ttttctttat ttaaggtttt agtaaaaaga
      961 tgaaaatcgc taaaaacagc agaaataaga gatctatact catctaaatt tttatcatct
     1021 ataagcgtat catcaacata aattccgcct ttgcttggct taaaaagtcc tgtcaaaagc
     1081 atacaaaaag tggatttacc acttccattt ttacctatta aaaataccaa ttcacctttt
     1141 ttaagttcta tatttacagg atttaaatga aaattttctt cataagcaaa ttgagtattt
     1201 ctaaaagaaa tttttttcca ttcactgata taatgtgttt ttttaaaacc ttctatataa
     1261 tcatctaatt ccaattttgc gatcttatcc aaagcgattt ttgccaaaag caaagtagga
     1321 aaagatccta tcatagatac taaaggggtt cgtaaaaaca aaatagaaag agctatagtt
     1381 gtagcatctg caacacttgc ccattcaaat tttaaagcta agtaaaactc tacgcccact
     1441 aaagccaaaa gagttacatt tgtccagttg tttgagagat tgttaaaaag attgcctaaa
     1501 gtactatttt tctttttcaa tcttgcatta ttttcaaatt catcttcata gtaaagcttg
     1561 gctctgtcac gattgatcaa aagttcttta tgtccatcta atatattttg gtaattattt
     1621 tgcaaagcat cgtcattttc ccttgccttt cgaaaatact gatatacttt catcatcaaa
     1681 aaattattag taataaaaat aaccataatc cataccacac acaaagcaaa aatttgtagt
     1741 gaaagataac ataaataaac actagtgcat aaaatcaata tacttgattg taaaaaatca
     1801 ggcaatctta aaagcccaaa agatatattt ctcacatcac ttcccaaaga agctaaaatt
     1861 ctagccttac ctactttagc gactcttaac aaaggggtgt ctaagatctg ctttactacg
     1921 cgcctttgca ttttaaaaat aaaattttgt ccaaaaatac taagtccaag ttcaactatg
     1981 gtagaactta taaaaaaaat caaaagcaaa acaataaaat aaaaaatagg aatgttttgt
     2041 gcatttttaa gcaaataatc attgataaaa acaagagtta aaactccaac agcgcttgta
     2101 ataaaagaaa aaagcaaaaa agaaatcaac tttaatttat tttgcttaag taattccata
     2161 ataaaaggca tttataaact ccaaaatata attttaatta taacatttta agagtgatta
     2221 tcaaaatttt attttatctt ttactataaa aacagcacaa atagccaata acgctaaaaa
     2281 aatcatatat atactcatac catataaaaa tggattttca tttttactcg caagtgtatt
     2341 aagccaaaaa acgagttgcg gagtaatacc gcctgaaatt gcataagcaa tattataaga
     2401 aaaagaaatt cctgaaaatc ttattttagc tctaaaaact tcactcatta aaataggtgc
     2461 gaacacatta atcccaccta aaaaacaaac aatcgaatac aaaatacaca ccaaaaccaa
     2521 atttttaagc tcatataaag cataaaaata taaaaaagaa aaaaatacaa aagctaaaga
     2581 aaagaaaatg caaattttga ataaaccaaa tttatctaca agataaccca taaaaacccc
     2641 gcctaaagct attcccaaaa ttcctaatat ctgtaaataa cttccttcaa ccccacttaa
     2701 atttaaaata ctaggcataa atttaggcat taataaaaca agcacaataa cacaacctgt
     2761 taaaacccaa gtcattatca ttgatgaaaa taaatttttt acaatatcct tttctttaaa
     2821 taaatcttta agtggaaaag aactaagcga tgattctttt ttcatttgtt taaaaacagg
     2881 agtttcttgc aaaaatctac gcaaataaat agaaataatc ccaaaaattc cacctacaaa
     2941 aaaagcaata cgccatgcat aagcagcaat ttcttctatg ctaaaaaaag cattaatgat
     3001 taaaaatact atacttccta acaaaattcc taaagccata gctgaattta aacagcttaa
     3061 aaagaaagct ttttgttttt cttgacaata ctctcttaca aaaacccaag ctccaggcaa
     3121 ttctccacct atagctatgc cttgaaaaat tcttataagt atcaataaaa caggagctaa
     3181 aaacccaaga gtttcataac ctggaataaa agctaagaca aaggtaggaa gaaccattag
     3241 taaaatactt agcataaaca tatttttacg cccaaattta tctccaaaat gtgccataac
     3301 tataccacct aaaggacgtg ctaaatatcc agctgcaaat gctccataag tatttaataa
     3361 agcccaaaat tcactcatat ctttaggaaa aaatacatta gctatatatt cagcaaaaaa
     3421 gacaaaaata ataaaatcat aaaattctaa agttcctcct agtgaagaaa gtcctaagat
     3481 cttaatttcc tttgtttcaa attttgattt tctcattgat taattacctt aaattttaaa
     3541 aacattgttt ttattatact ataatcattt ccaaaatatt atctaaaaat ttaaggataa
     3601 atatgtttaa ttttataacc actcttttaa aaaccaatct ttatttttta gaagaaaaaa
     3661 ccacaagcaa aaattcaaat caaacccata taatctcact taaacagtct gatgatgaat
     3721 ttttaaattt attattttct tttttagtgc cacaaagcga tgaagataag aattttatag
     3781 aaaaaactcg cacaaaaatc aaaagaaatg agcataatat tgttctgata aaaaatccaa
     3841 attttaatgc tttaatagac acagggtttt tagatactat tgacacatta aaagaaaaat
     3901 tacatatcca taaaaccgat tttaaagata tcactcatat tatcttaaca cacgcacatc
     3961 ctgatcatat aggtgcttta atgagcgaag aaaatctttt tccaaaagct caaattttaa
     4021 tcgataaaaa agaatatgat ttttggatca aaagcgatag acaagaaatt aaaaacacct
     4081 tgcttaaact taaaaatata gaatttatcg atcattccaa agatttgatc tttcaaaatt
     4141 caggtattaa agccatacct gcttacgggc ataccccagg tcaaaatgct atcataattg
     4201 atgataaaat agtcttttgg ggagatttac ttcatcttta tgatatacaa atcccaaaac
     4261 ctaaaatcgc tataaaattt gatatagatc aaaatgaggc tatacaaaca agggaaaaac
     4321 tacttaaaga atttaaagaa agaaaactca aagttatagg gactcatgtg ccttttatca
     4381 aacctaaatt tttagattaa ttacttaaaa attactaaaa attaagtaaa aattttaata
     4441 atttttgcta aaattatagc ctttttattt catgaaagga gaaaattttg gcaaaagatg
     4501 atgtaattga aattgatggc accgtacttg aagcattgcc taatgcaaat ttcaaggttg
     4561 aacttgacaa caaacatgta attttatgtc atattgcagg aaaaatgcgt atgcattata
     4621 taagaataat gccaggtgat aaagtaaaag tagaacttac accttatagc cttgataaag
     4681 ggcgtataac ttttagatat aaataatcta agttatttaa aagctaattt tagataaaat
     4741 tagagttttt gcgacaaatt acatcgaact atatgaagaa gtatttttaa aatccaccac
     4801 ttattttgaa aatagttggt tattcataaa acctgatgta gtcgtaaatc aagtggaatt
     4861 cattcaagga gacgctcatg aaagtgagac catcggttaa aaagatgtgc gacaagtgca
     4921 aagtagttcg ccgtaaaggc gtggttcgca ttatttgcga aaatccaaaa cataaacaaa
     4981 gacaaggata aacatggctc gtattgcagg tgtggattta ccaaagaaaa aaagaattga
     5041 gtatggacta acctatattt atggtatagg acttttcact tcaagaaaaa ttctagataa
     5101 agtaggaatt tcttatgata aaagagttca tgagttaagt gaagatgaag cagcagctat
     5161 ccgtaaagaa attcaagaaa actatatggt tgaaggggat ttgagaaaac aagttgctat
     5221 ggatattaaa gcacttatgg atttaggaag ctttagaggc ttaagacaca gaaaaggctt
     5281 accagttcgc ggacaaaaaa caaaaacaaa cgcaagaact agaaaaggta agagaaaaac
     5341 tgttggtgca aaatcataag gataaatcat ggcaaaaaga aaaatcgtaa agaaaaaagt
     5401 agttaaaaaa aatatagcaa aaggtattgt ttatatcagt gcgactttta acaatactat
     5461 ggttacagtg actgatgaaa tgggaaatgc tatcgcttgg agtagtgcag gtggtttagg
     5521 atttaaaggt tctaaaaaat caactcctta tgcagcacaa caagcagtag aagacgcttt
     5581 aaataaagca aaagaacacg gaattaaaga agtaggcatt aaagtacaag gaccaggaag
     5641 cggtagagaa actgctgtta agagtgtagg tgctatggaa ggaatcaaag taactttctt
     5701 aaaagatatc actccattag ctcacaatgg ttgcagaccg cctaagcgtc gtcgtgtcta
     5761 agatataaga aaaatttagg agaatattat ggcaagatat agaggaccag tagaaaaatt
     5821 agaaagacgc tttggtgtta gcttagcatt aaaaggagaa agaagactag ctggcaaaag
     5881 tgcactagac aaacgccctt atgcgccagg acaacacgga gcaagaaaag gtaaaattag
     5941 tgagtatgga cttcaattaa gagaaaaaca aaaagctaaa tttatgtatg gagtaagcga
     6001 aaagcaattc cgtcgtttat ttgctgaagc agcaagaaga gaaggaaata caggggtatt
     6061 acttatccag cttttagaac aaagattaga caatgtggta tatagaatgg gttttgctac
     6121 aacacgtcgt tttgcaagac aacttgtaac acatggacat attttagtaa atggtaaaag
     6181 agtggatatt cctagcttta gagtagaagc aggtgctaaa atcgaaatca tcgaaaaaag
     6241 caaaaacaat cctcaaataa caagagctat cgaacttaca gcacaaactg gaatcgttgc
     6301 ttgggttgat gttgaaaaag ataagagatt tggaattttc acaagaaaac ctgaaagaga
     6361 agaagttgtc attccggttg aggaaagatt tatcgttgag ctttactcta agtaataggg
     6421 gctaaatatg agaaatatta caacatctgc ttatacgcca acagaattta caatagaaaa
     6481 cattagtgat actgtggcta aaatcagtgc ttggcctttt gagatcggct atggaatcac
     6541 cctagcccat cctttacgcc gtttgcttta cactagcacc ataggatatg ctccaactgc
     6601 gatccatatt gatggcgtag ctcatgaatt tgatagcatg cgtggtatgc ttgaagatgt
     6661 agcacttttt atcattaatc taaaaaaact acgctttaaa attaaaggcg aatcaaataa
     6721 agaaatagta gaatttagct ttaaaggctc aaaagaaatt tacggcaaag atctaaataa
     6781 tgatcaagta gaggtagtaa acaaagacgc ctatctagca actattaacg aagatgctga
     6841 actcaaattc acattgatcg ttgaaaaagg tattggctat gtaccaagcg aagaaattaa
     6901 agagcttata aatgatccta aatttatagc tttagatgct ttctttacac ctgtaagaga
     6961 agcaacctat gatattgaaa aagttttgtt tgaagataat cctgattatg aaaaagtggt
     7021 tttaactgta acaactgatg gacaaatcac tccaaatgaa gcttttcaaa atgctctaga
     7081 agctatgtat aaacaattat cagtatttga taaaatcacc aatgttagaa gcgtaattaa
     7141 aaatcaagca acaagcaatg aactagaaaa tactaaatta ttgcaaaaca ttacagattt
     7201 aaatttaagt gctagaagtt ataattgtct tgaaaaagca ggagtagttt acataggcga
     7261 gcttgctttg atgagtgtaa gtgaacttgc agggcttaaa aatttaggta aaaaatctct
     7321 tgatgaaatt aaaaacatca tggaaagcat aggttttcct gtgggaactt ctaagcttag
     7381 cgataataaa gaaatactta aaaataaaat cgcagaatta aaagcacaaa acgaaggata
     7441 aagaatgaga cataaacatg gatatagaaa acttggcaga acttcatctc atcgtgctgc
     7501 cttattaaaa aatttaacta tagctttagt aaatagcgga aaaatcgaaa ctactctacc
     7561 aaaagctaaa gaattaagag gttatgtaga aagattgatt actagagcaa gacttggaga
     7621 ttttaacgct catagagcag tttttgcttc attacaagat aaaaacgcta ctaataaatt
     7681 agtgactgaa attgctccaa aattcaaaga tcgcaatggt ggatatacaa gaatcatcaa
     7741 aacaagaatt cgccgtggtg atgctgctga aatggctttc atcgaatttg tagcttaatc
     7801 aaatcctagc ttttgctagg attaatactt caattaaata ccttaaaaat aaaaagtttt
     7861 aaataattat tttaaataaa attaaattta tttattttct aaaacccttg ctaaaaattc
     7921 aactacttat gctaatataa gtttttaatt tttaatttca aggatatgtt atgcaagaaa
     7981 acactcgttt acgcattgcg atacaaaaat caggtagact ttcaaaagaa tccatagagc
     8041 ttctttcaga atgtggtgtt aaaatgcata tccatgaaca aagcttgatc gctttttcta
     8101 caaatttacc catagatatt ttacgcgtta gagatgatga tatccctggg cttatttttg
     8161 atggggttgt agatttaggc attatagggg aaaatgtttt agaagaaaat gaacttgaac
     8221 gccagtcttt aggagaaaat ccaagctata agcttttaaa aaagctagat tttggatatt
     8281 gccgtctttc tcttgcctta cctcaagaaa ataaatttca aaatttgaaa gattttgaag
     8341 gcttaaggat agctacttct tatccacaac ttttaaagcg ttttatgaaa gaaaatggga
     8401 ttaattataa aaattgtacg cttacaggtt ctgttgaagt agcccctagg gcaaatttag
     8461 ccgatgcgat ttgcgatctt gtttcaagcg gggcaacttt acaagcaaac aatcttaaag
     8521 aagttaaagt catttatgaa tctcatgctt gtttgattca aaaagaaaat gctttaagta
     8581 aagaaaaaca agccttagtg gataaaatta tgttgcgtgt agcaggagta atgcaagcaa
     8641 gagaatctaa atacattatg cttcatgctc caaaagaaaa gcttgataaa attcaagccc
     8701 tacttccagg agttgaaaga ccgactatct tacctttagc acacgatgaa aaaaatgtag
     8761 ctttacatat ggtaagtaaa gaaaatcttt tttgggaaac catggaggct ttaaaagaag
     8821 aaggtgcgag ttcgatttta gttctgccta tagaaaaaat gttaaagtga gtaaaaaatg
     8881 caaattttag tatatgataa tttggatgaa aaacaaaaag aagaagcgtt aaaacgccct
     8941 gctataagtg cgaaagatga aatttcaaaa atagtaagtt ctatcattaa agaagtgcaa
     9001 gaaaaaggcg atgaagcttt gatagaacaa gctttgaaat ttgataaggc tgaaatttca
     9061 aagattaaaa tcactcaaga agaaatcact caagcaagca agcgtttaga taaagattta
     9121 caagaagcta ttttagtggc ttatgaaaat atcaaaaaat ttcacgaagc ccaaatccca
     9181 catgaaatcg ctcttgaaac tacaaaaggc gttaaatgtg aagttttaac acgccctata
     9241 gaaaaagtag gactttacat accagggggt ttggcacctt tgttttcaac ggttttaatg
     9301 ctagctattc ctgcaaaaat tgcaggttgt gaaaaaatcg ttttagcaag tcctgcaaaa
     9361 atcaatgatg ctgtgctttt ttgtgctaag ctttgtggcg tggatgaaat ttatcaaatg
     9421 ggcggtgcag gagctatagc agctttggct tacggtaccc aaagtgtttt aaaggtggat
     9481 aaaatttttg gcccaggaaa tgcctttgta accgaagcaa aacgccaagt aagtagtgat
     9541 ataaacggag cagctattga tatgcaagca ggacctagtg aagttttagt catagctgat
     9601 gatttagcta atgaaaaatt tgtagctagt gatttgcttt cacaagctga acatggtgca
     9661 gattctcaag tgattttagt gtgtttaagt caagattttg ctaaaaaagc aagtgatgaa
     9721 gtccaaagtc aattagaact tttgcctcgc aaagaacttg caagcaaaag cattgctaat
     9781 tcacgcatta tcatagctaa agatttaaat caagctttag aaatttcaaa tctttacgcc
     9841 cctgaacatt tgatcataca aactcaaaat ccacgagaac ttttaaaagg tgtaaaacac
     9901 gcaggatcag tatttttagg agcttattcc ccagagtcta tgggtgatta tgcaagtggg
     9961 acaaatcatg ttttacctac ttatggactt actaaaacgc attctagttt aggtttggca
    10021 gattttagta aaagaatgac cgttcaagag ttaagtaaag aaggtttttt agctttaggt
    10081 aaaagtgttg aaattttagc acaaaatgag catttagacg cgcacaaaaa tgcagtaact
    10141 tttcgtttag aaagcttaaa atgagtcaaa aaatcctttt tatagataga gatggcactt
    10201 taatagagga gccaaaaagc gattttcaaa tcgatactct tgaaaaattg cgttttgaaa
    10261 aagatgctat tcccactctt ttaaaactaa aaaaatttgg atttaaattt gttatggtaa
    10321 gcaatcaaga cggtcttgga acaccaagtt ttccaaagga aaattttgaa atcgctcatg
    10381 aaaaaatgct tgatatttta aaaagttgcg gtatagaatt tcaagatatt tttatttgtc
    10441 cgcattttga aaatgaaaat tgtgcttgca gaaaacctaa aaccgctatg ttagaagagt
    10501 atatcaaaca cgaactttat gataaggagc aaagttttgt tataggagat cgtgagagtg
    10561 atatgatctt ggcttcaaat ttaggcgtgc gtggtttaaa atacggcgaa ctttcttgga
    10621 aagaaataga aaatgaaatt ttaagttctt ttagaagcgc gagttatcaa agaactacta
    10681 aagaaacaga tataaaagta aaggtatgct taaatggggg taaggttagc attaaaacag
    10741 gtattgattt ttttgatcac atgttagagc aaatcgctgt acatggaggt atagggcttg
    10801 aaatttcttg taaaggagat ttggaaatcg atgagcatca tagcgttgaa gatgtagcct
    10861 tagcacttgg agcttgtatc aaaaaagctt taggggataa aatcggcatt gcaagatatg
    10921 gttttgcttt acctatggat gagtgtttgg caagttgtgc gatggatttt tgcaatcgtc
    10981 cccatttagt ctataaagcc aaatttaaaa aatctcattt aggggcttta agcacagaaa
    11041 tgatcgagca ctttttttat tctttaagct atgctatggg cgtgagtttg catttaaaag
    11101 ttaaaggcaa aaacgatcat cataaagccg aagggctttt taaagccttt gcaaaagctt
    11161 tgaaaatggc agtaaaaata gaaagtgaaa atttagccag ctctaaagga gtgatatgaa
    11221 aatcatcatc atcgatacag cctgtgcgaa tttagcatct ttgaaatttt gtctagatag
    11281 attaggtttt aatgcaacta tcagtaggga tttaaaagaa cttgaaagtg cggataagct
    11341 ttttttacct ggagtgggta ccgcaaaaga agcaatgaaa aatttagaac aatttaatct
    11401 tattgatttt attcaaaata ccaaaaaacc tttgcttggt atttgtttag gtatgcaaat
    11461 tttaggaaat ttttctgaag aattaaatca agaaacctta aaactcatag attttacaac
    11521 tcaaaaattt aaagctaaag aaggctttac ttttccacat atgggatgga atgaagttta
    11581 tagctctcat gctttgttta aaggcttaga aggggcttat ttttattttg tgcatagtta
    11641 ttgtgtagga cttgggaaat acactatagc agattgtgag tattcgcaaa aatttagcgc
    11701 aagcgtaatg aaagataatt tttacggagt gcaatttcac cctgaaagaa gtagcgaggc
    11761 tggggaaatt ttaatttcaa attttattaa ggatatagga tgactcaaat catacccgca
    11821 ctcgatctta tagatggcga agtggtgcgt cttgtaaaag gggattacga acaaaaaaaa
    11881 gtatataaat acaatccctt aaagaaattt aaagaatacg aaaaagcagg agcgaaagaa
    11941 cttcatcttg tagatcttac aggtgcaaaa gatcctagca aaagacaatt tgctttgata
    12001 gaaaaattag ccaaagaagt cagtgtcaat ttgcaagtag gtggaggtat acgctctaaa
    12061 gcagaagtta gagctttgct tgattgtgga gtaaaaagag tagttatagg atctatggca
    12121 attaaagatg cgactttatg tcttgaaatt ttaaaagaat ttggtagtga agctatagtt
    12181 ttagccttag atacgatttt aaaagaagat tatgttgtgg ctgtaaatgc ttggcaagaa
    12241 gcaagcgata aaaagcttat ggaagtttta gatttttata gcaataaagg cttaaaacac
    12301 atactttgca cagatatttc aaaagatggc accatgcaag gagtaaatgc aagactttat
    12361 aaacttatcc atgaaatttt tcctcatatt tgcattcagg caagtggtgg agtagcaagc
    12421 ttaaaagacc ttgaaaactt aaaaggaatt tgtagtgggg ttatcgtagg aaaagcttta
    12481 ttagacggag tttttagtgt agaagaaggg ataagatgtc tggaaaattg acctataaag
    12541 aattaattat agaagtttta aaacaaacta aaaagccttt aaatgtgagt gaaatttggc
    12601 aaaaagctct tgaaaaaggc ttagataaaa agctttctag tataggacaa acacccactc
    12661 aaacaatttg gaataggttg cttacagata aaattaactt tcttaaaacc tcaataaaac
    12721 ctacaacttt ttggctaaaa gaaagagaaa atgaactttt aaagcttgat aataaaaatg
    12781 aaattactaa cgaaaaacaa gaaaaaaata aatttcatga aagagattta caccccttgc
    12841 ttgtaaaatt tttatatgaa aatttagatt ttaatttaaa ttgcaaaaca atttaccatg
    12901 aacaaagcaa aaagggtaaa ggtggggaag ataagtggaa ttatcctgat attgtagggg
    12961 tttattttcc ttatgatgat tatgaaaaag aaaccataac acttttagaa aatatcaaac
    13021 aaaacagcta taaacttttt tcttttgaac ttaaaattgc tttaaatttt tcaaatttaa
    13081 aagaatgcta ttttcaagct gtaagtaatt ctagctgggc aaatgaaggc tacttggttg
    13141 ttttacaaga aattgatagc gaagttttaa gcgagttaag acgcttaaat caaagttttg
    13201 gcataggagt gataaaactt gaaaaagata tttcaaattc tcaaatttta attagtgcaa
    13261 aagaaaaaga acttgatatt caaacactaa atatgctgat caataaaaat ccaaatttta
    13321 aagaatttat tgatgatata aacaaacaaa ttaaagtggg caaagaagca aaaattcaag
    13381 ctaattttga tgaaattaaa agcgatgaag aaatggaaaa atatcttaaa gaaaaatgta
    13441 ttttggagaa ataaatgctt acaaaacgca taattgcatg tttagatgtc aaagatggca
    13501 gagtagtaaa aggaacacaa tttaaaaacc ataaagatat gggagatatc atagagcttg
    13561 ctaggtatta ttctcaaaat ggtattgatg agcttgtttt ttatgatatt gctgcaagtg
    13621 ctagaaaaga acgcatatca agagaatggg taagtgaagt agcaaaaaat atcaatattc
    13681 ctttttgtgt tgcagggggt attaaaagcg aagaagatgc agctgaactt ttggctaatg
    13741 gggcagataa aatttctatc aattctcctg ctttaaatga tccaagccta atcacacgcc
    13801 ttgctaaaag ctttggcgtg caatgcgtag tagtagggat tgatagtttt aaagatgaaa
    13861 atggaaattt aaaagtattt caatacacag gggatgaaaa aacaagtaaa catagtggaa
    13921 aaagcacttt agaatgggtt aaaaaagtgc aagatctagg tgcaggcgaa attgttttaa
    13981 atatgatgaa tcaagatggt gttaaaaatg gctatgattt agaacaatta gaagctgtat
    14041 ataaaatttg taaagtacct ttgatcgcaa gtgggggagc gggaaaaatg gaacattttt
    14101 tagaagcttt taaactaggt atagatgggg ctttagctgc ttctgttttt catcaaaaac
    14161 ttatagacat taaagaatta aaaatttatc ttaaaaatca aggcttaagt ataaggatat
    14221 aatatgcaaa atttcaaaga acttaatgaa aaaatcgctt ggcaaaaagt ggataatctt
    14281 ttacctgtca tcatccaaga tgcaaaaact tgcgaagttt taatgctagg ctttatgaat
    14341 aatgaagcct tagaaaaaag cttagaaagt ggcaaagtag tctttttttc acgcacaaaa
    14401 cagcgtcttt ggatgaaggg tgaagaaagt ggaaatttct taaatatcat agatttaagc
    14461 ttagattgtg ataatgacac gcttttaatt ttagcaaatc ctgtagggcc tacttgtcat
    14521 acgggcgata tttcttgttt tgaaaaaatt tctaaaaatg cagattttgt ttttctagac
    14581 agacttgaaa aacttattaa tgcacgcaaa aatgccgatg aaaatacttc ttatacagca
    14641 aaacttttca aaagtggtac aaaacgcatc gcacaaaaag ttggtgaaga aggcgtagaa
    14701 acagctttag cagcgatagt aaaagataaa gaagagctta tttgtgaagc agcggattta
    14761 atgtatcatt taagtgtttt acttgcagat gcaaatctta gtttctcaga tgtgatttca
    14821 aagttgaaag aaagacataa agcttaaagc tttatgtaaa ataaaattta tatcaatgca
    14881 aggcttcatt aagtttgact gcttttttat ttaaagctac tatcatagca ccacttatag
    14941 aatcttgacg gaaatgtagt ccatttaaac ctttaagctc taagcctttg taaatttctt
    15001 tatcaaaatt aaaataagga ttaagtttag caagttcttc ggcatctttg agtaaaaatt
    15061 tcgttccctc tagcactgca atacctgcat caactataca attatcccct aaaggaattc
    15121 ctgtcactga attagcccct aaaagacaag ccttgcctac gcttatagca ttgccacttg
    15181 ttccacttaa aacacctaaa atcgaagctc cgccacctac atcagaacct tctcctacta
    15241 tagcacttga actaatacgc ccttcaacca tacaagctcc tgttgtacct gcattaaaat
    15301 tcacataact tgcccctggc atgatggttg ttcctgctgc taaagacgca cccattctta
    15361 ctttagaact ttctaaaatt cttgtattat cctcagggat aatatgtgct aaaaatcttg
    15421 ggaatttatc aacaaaatcg atttttggat attgattgct catttttaaa cgcatttcat
    15481 ttgctcttaa atactcaagc tcgataggct tatcatcact ccaagctaca ttgcttaaaa
    15541 gtccaaaagc tccatttaaa ttgatacttc ttaaaggtac ttttttagta gaaagcaaat
    15601 aaagttttag ataaatactt tctacactta aaggttcttt atcttcaaaa agacaaacaa
    15661 aagaaaattc atcgtcttta aatttatctt tgataatctt taataaatca atattttgat
    15721 gcccatcttc ttctaaaaaa ggtttaaaac aagaaagtgc aaaatcaata tcttctaatt
    15781 tcaaagtttg cacaaactca ctcgcattaa aatcaatctc cacgcccctt tgcataaaag
    15841 cttcaagcat gattgccgct gagccaaaat tttgctcata gttaatcaaa gcaaaacttg
    15901 cttgtaagat tttattttta tttaactgtc ctctatcaag ccttgctata ccaaaagctt
    15961 taggtttttt atagccactt ttttgctcga tttgtttgat taaaagtaaa aaatcttctt
    16021 tagtattaat cattttcttt tccttatcca cttaattttt aatgcgaaca cgcacttttt
    16081 ccattcatca caggttgtat agcagaatta tccgcaccac cttcattgtt aatcttttct
    16141 ataaaactcc aaattttttc agccgccatt aaataacgcc ttgaactcac actttcaggg
    16201 tgataaaaac tcacaggctt gccttcatct ccaccttctc ttactatcat ttctatagga
    16261 atttgtgcta aaacttcact tttataggct tttgccatat cttcagctgt tcctttacca
    16321 aaaatatcat actctttacc attatcagga cataaaaatc cactcatatt ttcaatcaca
    16381 cccgctatag gaatatgaag tttattaaac atatctaaag ctcttttgct atcgtctaaa
    16441 gatacggttt gaggcgtgct tacacaaact cctgcagtaa taggaatact ttgcgcagaa
    16501 gtaatttgtg catcgcctgt tcctggaggc atatctaaaa acaatacatc aagttcaggc
    16561 caaatcacat cagctaaaag ttgctcgatt gctttcataa tcatagctcc acgccacata
    16621 aggccttgac cctcttcgat caaaaccccc atactcatca tataaacacc atgagttaaa
    16681 ataggcttta atctctgccc tactacttca ggctgagttt tggtttcacc tagcattctt
    16741 ggaatatttg gcccataaat atccgcgtct aaaataccta ctctttttcc cattttagcc
    16801 atggaaattg ctaaatttac tgtagttgta gatttaccca caccaccttt tccacttgaa
    16861 accatgatga aattttttac ttgtggagcg atattttttc cacttcttga attacttttt
    16921 tcttcaggaa tttttggagt aatgatatta agttcaatat tttttaaagc caaactcgat
    16981 aaagcttcaa taatattttt acgaatttca ttagctactt caggatttgc tgaaacgatt
    17041 tctatatcaa tgaatacacc atcatcttga attttaatat cttttacaaa gttaaaactc
    17101 actatatcct tttcaaaacc aggatatttt acagttttta atttctctaa aatttgttct
    17161 ttcatatttt ttccttgtct tttaaaaaaa tcaattttac taataaaatg ataaaattta
    17221 gctttttata agtgtataat atggtaacat tataaaaacc aacaatatta aaaagaggaa
    17281 tgaaaaaatg agtgaaatga gcctcattat gttagcagct ggaaattcta ctcgttttaa
    17341 tacaaaggta aaaaaacaat ttttacgact tggaaatgac cctctttggc tttatgcaac
    17401 aaaaaattta agctcttttt atccttttaa aaaaatagtt gttacctcta gtaatatcac
    17461 ttatatgaaa aaatttacta aaaactatga attcatagaa ggtggtgata ccagagcaga
    17521 atccttaaaa aaagccttag agctcataga tagcgaattt gttatggtaa gtgatgtagc
    17581 aagggtattg gtgagtaaaa atttgtttga tcgtttgatt gaaaatttag ataaagcaga
    17641 ttgtattacc cctgctttaa aagttgcaga tacaacactt tttgacaatg aagccttgca
    17701 aagagaaaaa atcaaactca ttcaaacccc gcaaatttct aaaaccaaat tgcttaaaaa
    17761 agccttggat caaaacctag aatttacaga tgatagcaca gctatagctg caatgggtgg
    17821 aaaaatttgg tttgttgaag gtgaagaaaa tgcaagaaaa ctaaccttta aagaagatct
    17881 taaaaaactt gatttgccta cacctagctt tgaaattttt actggcaatg gttttgatgt
    17941 gcatgaattt ggagagaatc gccctttgct tttagcagga gtgcaaattc atcctactat
    18001 ggggcttaaa gcacacagcg atggagatgt tttagctcac tctttaaccg atgcgatttt
    18061 aggtgctgca ggacttggag atataggaga gctttatcct gatactgata tgaaatttaa
    18121 aaatgccaac tccatggagc ttttaaaaca agcttatgat aaagtcagag aaataggttt
    18181 tgaactcatt aatatagaca tttgcgtcat ggcacaaagc cctaaactta aagactttaa
    18241 acaagctatg caaagcaata tagctcatac tttagattta gatgaattta gaatcaatgt
    18301 taaagccaca acaacggaaa aattgggttt tattggaaga aaagaaggta tggcggtgct
    18361 tagtaatgta aatttaaaat attttgattg gacaagatta tgaaagtttt aattattgaa
    18421 aatgaaattt atctagcgca aagcattagc attaaactaa gtgatgctgg atatagctgt
    18481 gaaattatta actcgtttga tgaatacaat ggtgaaaaat actatgacat tatactgctt
    18541 tc
//
LOCUS       DARGEM010000017        17863 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.017, whole genome shotgun sequence.
ACCESSION   DARGEM010000017 DARGEM010000000
VERSION     DARGEM010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17863
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.017"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1140)
                     /locus_tag="SFZ78_000497"
     CDS             complement(<1..1140)
                     /locus_tag="SFZ78_000497"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG8211399.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCG"
     gene            complement(1134..1958)
                     /gene="galU"
                     /locus_tag="SFZ78_000498"
     CDS             complement(1134..1958)
                     /gene="galU"
                     /locus_tag="SFZ78_000498"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG8211400.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2040..4013)
                     /gene="acs"
                     /locus_tag="SFZ78_000499"
     CDS             complement(2040..4013)
                     /gene="acs"
                     /locus_tag="SFZ78_000499"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG8211401.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSSFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPDLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
     gene            complement(4152..5147)
                     /locus_tag="SFZ78_000500"
     CDS             complement(4152..5147)
                     /locus_tag="SFZ78_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211402.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIASSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFILEKCY
                     IIALRSRKSDVFIRVSCMDKILEFALEKQEFLKFDLKLYEELSLYFYEDAICFLN"
     gene            complement(5149..5835)
                     /locus_tag="SFZ78_000501"
     CDS             complement(5149..5835)
                     /locus_tag="SFZ78_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211403.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKIKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            5914..6723
                     /locus_tag="SFZ78_000502"
     CDS             5914..6723
                     /locus_tag="SFZ78_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8211404.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKDFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            6865..7632
                     /locus_tag="SFZ78_000503"
     CDS             6865..7632
                     /locus_tag="SFZ78_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG8211405.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            7642..8382
                     /gene="pxpB"
                     /locus_tag="SFZ78_000504"
     CDS             7642..8382
                     /gene="pxpB"
                     /locus_tag="SFZ78_000504"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG8211406.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            8363..9328
                     /locus_tag="SFZ78_000505"
     CDS             8363..9328
                     /locus_tag="SFZ78_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG8211407.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(9325..10221)
                     /locus_tag="SFZ78_000506"
     CDS             complement(9325..10221)
                     /locus_tag="SFZ78_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8211408.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(10254..10832)
                     /locus_tag="SFZ78_000507"
     CDS             complement(10254..10832)
                     /locus_tag="SFZ78_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8211409.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            10932..11279
                     /locus_tag="SFZ78_000508"
     CDS             10932..11279
                     /locus_tag="SFZ78_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8211410.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            11267..11716
                     /locus_tag="SFZ78_000509"
     CDS             11267..11716
                     /locus_tag="SFZ78_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEG8211411.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(11718..12794)
                     /locus_tag="SFZ78_000510"
     CDS             complement(11718..12794)
                     /locus_tag="SFZ78_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG8211412.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(13022..16117)
                     /locus_tag="SFZ78_000511"
     CDS             complement(13022..16117)
                     /locus_tag="SFZ78_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG8211413.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLVQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            complement(16120..>17863)
                     /locus_tag="SFZ78_000512"
     CDS             complement(16120..>17863)
                     /locus_tag="SFZ78_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211414.1"
                     /translation="FQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFLRALNLFFN
                     HNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDKIVYILNGK
                     MVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQSEPLRTLKL
                     FIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVKTMTSVTLD
                     DGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQKKIMEIFK
                     NIVREKKQPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQEINTKPIYI
                     GTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLSMPNIIHSG
                     GATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPNIKLDAKKL
                     KRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDRKKLAFKNM
                     SILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDYHVDFMNEL
                     IDSFNKVDLIKKDN"
BASE COUNT         5975 a         3096 c         2519 g         6273 t
ORIGIN      
        1 accgcaagtt gaagtaaaaa gttcataata atacatcaaa tatcccgcat gccaagcatc
       61 aagtttttca agttctatca catcaacact caaattttca gcgattaaag cgtgcatagt
      121 tgcattacat tgagcgttta aaagttcgtg aagattgact ttattactta aagaatctaa
      181 aaatttaaaa tgaatatcag ggataatagg tgctttttga gcgtctttga tttttaaaaa
      241 agttacagtt ttatttttag gtccatccat aatgagttgt aaaaaactat gctgatctct
      301 tgctccaatg agtgcaatag gagttaaacc tatacgttta tagccttgct ttttacctaa
      361 actttcagca ataagctgga tataccattc attaaagcct ttaaaagcat cactatatga
      421 aaaaagtaca ttgatattgg catttttgtg tgtgcaataa tgataggctt tttgtaaaat
      481 ttcatctttt ttatgagtaa aaaaatcttc aaaacaagct ttagctcctt ctaaaagagc
      541 tttggcatta tagccacaaa aacaaagcgg aactatacct acggctgaaa gtatgctaaa
      601 acgacctcct acatttgcag ggataaaaaa gcatttaata cctaaatttt caccttcttg
      661 atgaagtttt gaatccttat cggtaataaa aacaaagtat ttttttaatt cttgcatatc
      721 aagtttaaaa tgttcaataa gaagtttaaa aagcgataca acttctatag tactacctgt
      781 tttgctgatg attaaaaaca aactttcctc aagcttgatt ttttctaaag tcttattaaa
      841 agaatgtgaa cttgtgttat cgagtataaa aagttctctt tggttgcttt tttcattaaa
      901 aagcatatca cgcaaggctt ttacaccaca acttgaacca cccattccca ctaaaacgat
      961 attttttatg tgttctttgt ctttgataaa agccaaactc tcatcgatta aattcaaact
     1021 tgtatcaata agatgataat accctatatc tccacttttt acctcatcat taatacgatt
     1081 tgcataagaa cttatagtgt gaatttcact ttgcttaaaa aaaagtgtat tgtttaacat
     1141 ttacttttct cgtaaaaata atttgtcgct tctacaaagc cttctacact tccacaatca
     1201 aagcgttttc cttgaaattt ataagctaaa accataccat tggttgcttg agttaaaagc
     1261 gcgtcggtaa gttggacttc accatttttt cccgctttag tattttctaa aattccaaaa
     1321 atatcaggag ttaaaatata tcttcctatg atagcaagat tacttggagc ttcatcagga
     1381 cttggttttt ctatcataga attaaccatg ataagatttt cttctacaaa atttccagaa
     1441 attactccat agtttgaaac ttgctctttt ggtacttcca tcacagctat gatggtgcag
     1501 cgatattttt cataaatttt taccatttga gccataacat ttaagccttc ttcattaaca
     1561 cacaaatcat cagccaaaat tacgccaaaa gcttcatcgc caaccaaagg tctacctttt
     1621 aaaaccgcat cacctaagcc tttcatttga ttttgtcttg taaaagtaaa ggtacaacga
     1681 ttgatcaaag agcgaatttc atcaagtaag tattcttttt ttgtacctga aatttgatgt
     1741 tcaagttcat aagaaatatc aaaataatcc tccaaagctc tttttccacg ccctgtgaca
     1801 aatcccatat tttccattcc tgcttctaaa gcttcatcaa ctccataatg gatcaaaggc
     1861 ttggttaaga taggtaacat ctctttaggt aaagtttttg ttgcaggtaa aaatctcgtc
     1921 ccataacctg ccgcagggaa aatacaagtt tgaagcataa aaatttcctt ttattttttt
     1981 atcattatag cttattttta tgaattttca tgcaactagg caaagttctt tttaccttgt
     2041 tattcaaact ctgccttagc taatttaaca atggtttcta ctactttaga atcttcaagt
     2101 gttgaaatat cctgtttgat ttcttcacct cttgctatag ttcttaaaat tcttctcatt
     2161 attttaccac ttctagtttt tggcaaatct ggagtataaa gaattttttc tattttagct
     2221 ataggtccta tttctactct taaaatgtca ttaagttctt ttaaagtttc tatagctccg
     2281 ccaagatcac aactggatgc aggacttaaa accacaaaag caaacaatga ctcgccctta
     2341 atcgtatcca aaatactcac tacagctgat tctgctacac ttggatgttt agcaatagcg
     2401 ctttcaattt cagccgttcc tatacgatgt cctgcaacat taaccacatc atctgttctt
     2461 cctgtgatgg taatataacc atttttatca taaaaagcac catcgccact aaaatataca
     2521 gcttttccat cttttttagc ttgagaaaaa taactttcta tatagcgttc atcattgccc
     2581 caaattccac gaatcatcga aggccaaggt ttagttatac aaagcaaccc atcttcacct
     2641 tcatcttttt tattgccttc ttcatcaata acttctgcaa aaatccctgg caaaggcaag
     2701 gtggcacaac ctggttttaa aggagtggcg cctggtaaag gcgtgatcat atgcccacct
     2761 gtttctgttt gccaccaagt atcgactata ggacttttag ttccccctat ttcatcataa
     2821 aaccacttcc aagcactagg attgataggc tctccaaccg ttccaagcac ttcaagcgta
     2881 cttaaatcat attttcttgg ctcattaggt gcatcagcat gaagcattct tatggcagtt
     2941 ggcgaagtgt agaatttgct tatttgatac tcttctatca ttctccacca acgcccagaa
     3001 tttggataag taggagttcc ttcatgcatt atagtcgttg ctccacatgc taaaggccca
     3061 taaactacat aagtatgtcc tgtaatccaa cccacatcag cactacacca ataattatca
     3121 taatctttaa tatcaaaaac ccattccata gtcatttgtg cccaaagtat atatcctgca
     3181 cttgcatgca taactccttt tggcttgcct gttgatcctg aagtgtaaag caaaaacaac
     3241 aaatcctcac tatccataat ttcgggttca cacttataag actcattttt cacaagttcg
     3301 ttataaacat agtcccttcc tttaatatat tctataggct cattattgcg tataactata
     3361 agtacttttt ctacactttc acacccttca cttaaagcct tatctactgc aggttttaac
     3421 atataaggtt tgccacgacg aaaagcacca tcagccgtta ctacaagttt agctcctgca
     3481 tctataattc tatctcttaa ggcttcagga gaaaaccctc caaatactac actatgaata
     3541 gccccaatcc ttgcgcaagc taacattact atagctgttt ctggaatcat aggcatataa
     3601 attacaaccc tatcgccttt ttttactccg aattttttaa gcaaattggc cgccttgcaa
     3661 gtttcatgca ataatcttct ataagtataa acttcataat ctcccatttc accttcaaaa
     3721 atcaaagcag ctttattgcg tcttgttttc atatgacgat caagacattg ataacttaca
     3781 tttaaagttc caccttcaaa ccatttataa aatggagctt tatcctcatt taacactctt
     3841 gaaaaagacg aaaaccactc gatcttctca agtgcttgtc ttttccaaaa accttcaaaa
     3901 tcttccttgg cttcatcgca taaatcatag tattcacata aattttttat acgagcatta
     3961 cgagaaaatt ctttacttgg cttaaaaagc tcttgattat tttgattaag cataaaaact
     4021 ccttatatgg ttatttttaa acattatata agagtttatt tgtattaaat acaaatttaa
     4081 aaaataatta atataaattt tataaaaaat gggaatattt gtaatatttt atttaaattt
     4141 tataatgtat gttaatttaa gaaacatatt gcatcttcat aaaaataaag actgagttct
     4201 tcgtataatt ttaaatcgaa ttttaaaaat tcttgttttt ctaaggcaaa ttctaaaatt
     4261 ttatccatac aacttaccct tataaaaaca tcacttttcc tacttctaag tgctataata
     4321 taacattttt ctaaaataaa atcataatta ttttttggga tatttttaga attaaaaaaa
     4381 gaaattttat aaggatcaat cgcaatttta cttggaggtt ttttaaaatc tttatatttt
     4441 ttacaattac taaaatctat aaaattacaa aatttcacac cttgattttc tagttcaaaa
     4501 acattagtat tttcaaattc taaaatttct ccactgtgta aataaagctt tttttgcgcc
     4561 aaagaatcta aaaaatgttt atcatgactt gcgattaaaa aacctgtatt gaaattttca
     4621 tgcattttaa gaatagcttt tttaaataaa agtgtagtat ttttatccaa aaaagcactt
     4681 ggttcatcaa gtaaataata cttcgctctt acgcttgaag ctatagcaaa agctattttt
     4741 tgactttgtc ctgatgaaag ttcattagga tgtttactta aaagactttc atctaaattt
     4801 aaaaacatca aactttcttt tatgcgttct tcaatatctt ctttaatccc ataagttttt
     4861 aaggtaaata aaaaatttgc ccttacacta cgatttaaca aaataggctc tggaaaaagc
     4921 aaataaattt cacgcttttg tttattatta ggtttaaaat ttccaaaata agaaatattt
     4981 tttgaaaaat ctccttctaa aaattttaat attcttaaaa atgtagattt tccacttcca
     5041 ttcgctccca ttaagatgct aattttactt gtatcaagtt ttaaattttt gatttttaaa
     5101 acttctttgt tttgatagtt gaaaaaaaga ttagaaattt ctatcatttt atgttctttt
     5161 gagtttgtgc gtgatgaaat ttaaacaaaa ggcaatgaga attaaaacca aagccaaagc
     5221 tataccgcta gcaaattcgc ctttgtttgt ttcaagagaa atagctgtgg ttatggttct
     5281 agtatcgtat ttgatatttc cacctactat catcgctact cctacttctg ctacaatgcg
     5341 tccataagct agtgcaacga cgctaatcaa agcaaagcgt aattcataaa tcatcgttaa
     5401 aacaagtttt aaaggactta ggtgaaaaga ttttataagt aaaaaatgtt ttttattcat
     5461 attttctatc aaatttgaaa aaagtgcgat cactatagga agcgctaaga taaactgccc
     5521 taaaattaaa gcctttatag taaaaagtag tccaaattct cccaaaggtc ctcgacttga
     5581 aatcagcgca taaagtataa gtcctactgc aactgttgga aaagagaggc tagtatctat
     5641 gataagtttt ataaagcgtt tgattttaaa atcaaaaaag cctaagataa atcccaaagg
     5701 aaaacctata agcaaagcta aaactataga aatacttgag cttaaaagtg tagtttttat
     5761 agctgaaatt acgctttcat cagcattgaa aagtaaaaat aaagcctgtt taaaaccatc
     5821 aaaaatataa tccaaaaata tcctttttaa aataagtaat tttagcataa ttatgctaaa
     5881 atattttttt atgtaaattt ataaggaaaa aaaatgaaaa aaatcatttc tttagccctt
     5941 gctttagctt taagtgcaag tgcagcagaa cttaaaatgg caactacaac aagcactgac
     6001 aatacaggac ttttagatgc tctaaaacct ctttatgaaa aagaaagtgg caatacctta
     6061 aaatgggttg ccgtaggaac aggtgcggct ttaaaaatgg gtgaagattg caatgctgat
     6121 gtgctttttg tgcattctcc aaaggctgaa aaagaattta tgaaaaaaga ctttggcgta
     6181 gatagaactc ctgtgatgta taatgatttt atcatcatcg cagataaatc tttagcttct
     6241 aaatttaaag gtaaaaattt aaaagaaagc ttagaactta tcaaaaatga aaagcttact
     6301 ttcatctcaa gaggcgataa atcaggcact gacaataaag aaaaaagcct ttggaaaaat
     6361 cttggtggtg ttcctgaaaa gcaaagctgg tatcaacaaa gcggacaagg tatgttagca
     6421 agcattaaaa tcgctgaaga aaaaaaaggt gtgattttaa ccgatcgtgg tacttatatc
     6481 aaatatgaag ccaatgaaaa aggcaaacca aacttagtta ttgtaaatga aggcgatgat
     6541 agtcttaaaa atttttattc tgttatagcg acaaatccta agcattgtaa aaatgtaaat
     6601 tatacagaag ctagtaaatt tatcaaatgg gtaacaagtg ataagacttt aaatttcatt
     6661 gctgatttta aacttcttaa taaaccttta tttgtaattg atgcaaaaac aagaaaagac
     6721 taaaaattaa gcaggtttta acctgcttaa aatatcattt tttacttatt gtaacttttt
     6781 tatttatttt tcaaaacttt tagattattt aaaattcttc tttagatata ataaaatcaa
     6841 taattaaata tacaaggtca aataatgttc aaagtggatt taaatagtga tttaggggaa
     6901 agttttggcg cctataaaat gggaatggat gaagaaattt taaaatttgt aagttcagta
     6961 aatgtcgctt gtggctttca tgcgggtgat ccttgtgtga tggatgaaac cttaaattta
     7021 gccaagcaaa atggtgtttg cataggagca catccatctt atcctgatct tttgggtttt
     7081 ggaagacgca atatgcaaat aagctttgaa gaggctaaaa actatgcctt gtatcaacta
     7141 ggagctttat ttggctttgc taaggcaaaa ggtatgaaaa tacagcattt taaagcccat
     7201 ggggcgcttt ataatatggc agctattgat gaaaatttag ccttagcact ttgtgaggca
     7261 gtggcgagtt ttgatgaaaa tattattttt ctagggctta gtaattctgc tatgaatgaa
     7321 gcagctaaga aaaagggttt aagatatgct aatgaagttt ttgcagatcg tgcctataat
     7381 gatgatggca ctttagtttc aagaaaatta gaaggggcgt taatacacga tgaaaattta
     7441 gctatcaaac gcgtgataaa aatgataaaa gaaagcaaag ttacaagcat aaatggcaag
     7501 gaaattgatt taaaagccga tagtatttgt gttcatgggg ataatgcaaa agctttagaa
     7561 tttgttaaaa aaatcaaaga aaatttaaaa aaagagcaaa ttcaaatttg tgctttggaa
     7621 aattttatat aagttttagc aatgtttagt gtgcatttta gtggaagtaa agctttgctt
     7681 ttgcgttttg agcaagaaat ttcacctcaa atcaatgcct atgttttaag cacagaacaa
     7741 aggatacaaa aagccctaaa agaaggtgaa atttatggga ttgatgagtt ggtaagtgct
     7801 tatgcaagct tgcttatata ttttaatcct tgcgtgcttt ctttaaattc cttgcttgat
     7861 tttttggaaa aaattaaaaa ggatattaaa cttgcagaac aaaactcaag tctttgtata
     7921 gaagttccac tttgttatga tgaagaattt gggctggatt tagaatttgt gtgcaaacac
     7981 aatcaaattt caaaagaaga gcttatatct cttcacacta aaccttatta tcttgttttt
     8041 atgctaggtt ttatggcagg ttttccttat cttggaggtt tagatgaaag actttttacc
     8101 ccacgccttt caagccctag agcaaaaata gaagctggaa gtgtaggtat agccgataaa
     8161 caaacaggag tttatcccat atcaagtcca gggggttggc aaatcattgc tagaacacct
     8221 ttggaatttt ttgataaaga agatgaaaaa aatcccactc ttttaaaagc gggtatgttt
     8281 ttaaaattta aagccatttc aaaagatgaa tttttcgata tccaagagca agttgctaaa
     8341 aaagtctatc aaaaggaaat ttatgagtat aaaaatcatt gaagcatcta taaattcaag
     8401 tttgcaagac tttggtagaa aaaaatttgc taaatttggc atagcaagaa gtggagctat
     8461 ggatgaagat gctttaagaa tggcaaatat cttgcttgga aacaaacaag atgaagcagg
     8521 aattgagctt tgtttaaagg gtggaaaata cgaattttta gatgagaatt attttgtttt
     8581 aagtggagct gaatttgagg caaagcttga taatcaaaaa atcaaaactt gcaaagtata
     8641 tcaagcaaat aaaggcgata ttttagaact tgatttagca aaaataggtt ttcgtgggta
     8701 tttatgcgta gcgggtggct ttgaagtaaa aagtttttta aactctaaat ccagtgatgc
     8761 taaaatggga gctggagttt ttgaaggaag agctttgcaa aaagatgata ttttaaatac
     8821 tcataatact tttatacctt ttaatttaga agctagagaa tgtgaaaatc ctctttttaa
     8881 aagccctaaa gagcctatta tacgcgttat tttaggaaca aatgaagatg cttttaccca
     8941 aaaaggcata gaaacctttt taaatactac ttataaagta ggtttaaaaa gcgatagaat
     9001 ggcaatttat gcagaatcta gtgaaagtat agagcataaa aactcagcag atatcatctc
     9061 agatcctgcg gtttttggaa gtatacaagt gccaaaaagt ggtattccta tcattttaat
     9121 ggcaggaaga caaagcacag gaggctatac aaaaatagcc acggttatag aaaatgatct
     9181 aagcttactc gcacaagcta agttaggttc tagctttaaa tttcaaagca ttagcatgca
     9241 agaagcctta gaactttata aacaaagaga aatgaaattt aaagctatgg atcaaaaaat
     9301 caatcttgat tttgaaaatt taatctaagc ttttttgcca taaatattga taaaatatat
     9361 agcacctata gccaaggcac aacctaacaa ggtaagtgca tttggcacct catctagtat
     9421 aaaataacta caaattaaag cactagcagg agtgattaaa acaaaagaat ttgccttaac
     9481 gcttcctaaa atgtgaatcc cataataata aatactagtt cctataatag ttgataaaaa
     9541 agccacgaca aacatactga tccaaaattt aaattcaaaa tgaaaaattt cataactttt
     9601 tacatcaaac aatatccaag aaaacattaa aatagaaatg agattaatat aaaagttaat
     9661 cgccaaaggg tgagctcctt tggctttatg attaaacact gccatcaaag cccaaataaa
     9721 agaacaagtt aaaaataaaa tattaaattt accaaataaa tcttctaaac tccctaaatt
     9781 tagcaaacaa aatccagata ataaacctaa aaataagcct agaatttcac tctttgtgat
     9841 cttgtgagtt gattttttgt ttttttgaaa aaatatcgct atcataaata tcaaataaga
     9901 aaaaatagga atcatagtgg ttactaaaac tcctcctttg cctgccaagc cgtgctttat
     9961 agcgataaaa aatacaaagg cataaagccc atttaaaact cctgctatca atacccattt
    10021 taaggcagtt ttttcgattt taagaggaat ttttaagaag tttaaaacaa aaaatgaacc
    10081 caatacaaca aagaaaaaac gccaaaaggt aataatagaa gtatccgtat aatttgctaa
    10141 aatcttagat gttggccaag atgagcccca taaaaacata gcaataacaa gcaagatata
    10201 caaatacttt gttcgagtca atgttgcacc ttgaaatttt taagtcaaat tttttaaaaa
    10261 atttttttca agtgtagttc atactcgttt agatattttt ccacttgagg attttttacc
    10321 acatcattac acataaaagt tggtaaagct ttcataccta taaattcatg agccttatgc
    10381 aaatgccaat acaccatatc tacacccttt ccttcaaaaa attcattttt atcattaaag
    10441 gcttcaagag gtgcattcca agtgagagaa aacatgtatt ttttaccatg atctaaacca
    10501 ccttttccgt agtttttact aggattttca tgagttcttc catcattttt aaaaagcact
    10561 ccagcaccca aaccaaacac ttcatcgata tattttttaa ctatccaagg ctcccccatc
    10621 caccaagctg gcatttgata gatcacagca tcagctttta taaatttttg catctcttct
    10681 ttaggatcat atccttgatc tatgtgagtt tgatctacct cgtatcctag tgtttttaaa
    10741 atttctaaag catgattatg caatgtcaaa ttaagttgtc cttttgaatt tccaaattct
    10801 ttagcaccat taagcaagag tatatttttc atttttatcc ttttttaaat tttatgatac
    10861 aattataact tagcataata tcattttcaa tacagaaaat aaagtaatat actatactaa
    10921 aggaatgtta aatgactaaa gagaattctc cgtgcaattt cgaagaatgt ggatttaact
    10981 atactctagc attaattaat ggaaaatata aaatgagtat tttatactgc ttatttcgct
    11041 atgaaatcgt gcgttataat gaactcaaac gctttttaag ctccatatct tttaaaactt
    11101 taaccaatac cttaagagaa ctagaaaacg atggtttaat tatcagaaaa gaatacgctc
    11161 aaattccacc caaggtagaa tatagcttat ccaaacgtgg acaaagttta attcccattt
    11221 tacaagctat gagcaaatgg ggcaagaaag acaaaaaagg gaaaaaatgc ttgaattaat
    11281 tggtgaactt tctttgcaaa attatatggg agaatggctt gaaatagcta gaaaaccggc
    11341 cttttttcaa aaatcttgcc taaattcaaa ggcaaaatac gagcttaaat acaaaaatgg
    11401 cattccttat gtagaaattg agaatttttg cagtaaaaaa aatgaaattt caagtataaa
    11461 gggtaaggca aaaatcgttt caaataggca attagcagtg agatttaaca tctttatgaa
    11521 cctttttaat aaagtaaatt atgaaatcat ttttgttgat agcgagtata aagttgccat
    11581 tgtgggtagt cctgataaaa aatatctttg gattttagca agaaatataa tagatgaaaa
    11641 aaatataaaa gagcttttaa acatcgctaa gcaaagggga tttgacatta gcgatgtggt
    11701 ttttgataag tattaaatta ttcttttgtc atatcaatga catagcgaaa tttagccttt
    11761 cctgaggtta gattttcata agctttatcg atttcttgtg gggtaataag ctcggtttct
    11821 ggataaattc cgtgttttaa agaaaaatca agcatttctt gagtttcagc aataccacca
    11881 attaacgagc cataaacctt tttacctgcc ttatgtacaa aggttatcac gctgatactt
    11941 ggagcaactt cgtgaggtgg caaacccact atcgccattt caccgccaaa tttaagcaaa
    12001 tccaaataaa tagcaggatt ataaggcgtt ggaatggttg agatgattaa atcaaaacgt
    12061 tcttttacag cgtttttatc gcagcttgtg taaaatgagc ttacacccat agccaaagca
    12121 tcggcttttt tgttttcatt tctagcaaaa acgctaacct ttgcacccat tttcacagca
    12181 tatttaaccg ccatcatacc aagtccgcca aatcccgcta ctgctacgct tgagccttct
    12241 ttgatatttg aaaatttaag cggagaataa gtggtaattc ctgcacaaag caaaggcgcg
    12301 actttttcca tcggtgcatc ttttggcaca caaacggcaa atttttcact tacaactatg
    12361 ttgtttgagt agcccccata agtgttttca ttgccatgaa atacatcaca actattgtaa
    12421 gtaaagatgg ttttgccatt ttcgcaaaac tgctcttgtg agcgtttgca agcatcgcac
    12481 tcaccgcatg aatttaccat acaaccaacc cctgcgtaat ctcctacttt aaatttactc
    12541 acatttttac ccacagcgat aacttctcct gctatctcat gcccaggcac gcaaggataa
    12601 gtagcttctc cccactcgct tcttgcggtg tgaatatcgc tatgacaaat gcctgcatat
    12661 aggattttaa tcaaaatatc attatcgcca atagcatggc ggctaaattc aaaaggtgta
    12721 aatttcgcat ccttgctaag cattgcatag cctttacttg cgatgcgatt gttttctaaa
    12781 attttgtatt gcatttttgc tccttttttg attttttata attataaaac attagagtag
    12841 ctataagtca agagtgaaaa taatttttta aaaattagta taaatactgg atactagtga
    12901 aattgtataa aattaagcaa attttataac aaagacatag ttgcaacgac aaatcaagct
    12961 atctataata aagataaaag aaaataatac aaacaaattt aatttcagta tcgcttaaat
    13021 tctactcgtt agctaattcc ttagccaaaa tttcagcttg agctaaaact ccatcaattg
    13081 caagttgttg catatcaggt ggataaccat acttatttaa cactcttttt acagctactc
    13141 ttaatcttgc tcttacattt tcttttatca tccagtctat acttacattg tttttgataa
    13201 tttgcagtat ttcactaacg agtgctaata gtttttcatt gcctaaaatc ttttcatact
    13261 catcattaca agcaagtgct gagtaaaagg cgtattcata gtcttttaaa cctaacttct
    13321 tagcctcatc ttccatactt actatgcttt tactcatatt tattagctca tctagcgcct
    13381 cgcttgatga gattagctta ttgttatatt ttttgatagc atcactaagc atttgtgcta
    13441 attttttagc ctttgttagg cttagctttt ctcttgcttt tatctcatca tttagtatct
    13501 tttttagcat ttcaaaggct aaatttttac gcttcatatt ctttacttct agtaaaaact
    13561 catcagaaag tatagatata tcaggctttt ttataccact agcatcaaaa atatccacca
    13621 ctttagatga tacaatagct ttatctacta cttgctttat caaagcttga ttaagcaaat
    13681 tttcattctc attttcttta gcaaacttta aaaacctagc ctttatcgca tacataaaag
    13741 cgattttatt ctttatgctc aaagcttttt cgtgtggcat agctatcgtg taggctttat
    13801 caagtgctgc aaattctttt ataaatctgt tcttaccatc ttcatttgat aatatatgct
    13861 cttctacatc aagtatatat tcaagtttag cccccgtatc aagttcaaag tatttttcat
    13921 agtcatttgg cagcatttgt tctacgattt caagcttttc tatcatcact tttacagcgt
    13981 cttcttgagt agtgattata tcgcccttgc caccactttc actataaaat gataaagctt
    14041 ttttcaaatc acttgcaatc ccaagataat ccaccacaag cccactaggt ttatccttat
    14101 aaaccctatt tactctagct atagcttgca ttagattatg ccctttcata ggcttatcta
    14161 tataaagagt atgaagcgat ggcacatcaa agccagttag ccacatatcc accactataa
    14221 ctagttttaa ttcatcgtct atatttctca tacgatttgc caaaaactgc ttttgaatct
    14281 tacttgtatg atgtttacta aactctaccc catcgctaga gcttgaagtc atcactactt
    14341 ttatagcccc gctacttagc tcatcgctat gccaacttgg tcttattttt atgatttcat
    14401 catatagttt tatagctacg cttcggctta tacttactat catacctttt ccgccgagct
    14461 tactagacct tgtttcaaag tgttttacta tatctttagc gatttgtttt agtctgcttg
    14521 tgctacctac taaagcttct agcttagtag cttttgcttt ttggctatct tggttttcaa
    14581 gcttttcatc taattcattt acaagccttt ttccttcttc gcttagctct attttggcaa
    14641 gtctgctttc ataatatata ctcacagtag caccatcttc aacagctctt gatatatcat
    14701 atatatctat gtagtttcca aaaactgcag gggtgtttat atcatggctt tcaattggcg
    14761 ttcctgtaaa tcctatataa gtagcatttg gcaaagcatc acgcagatat tttgcgaaac
    14821 cataaactat cttttgcact agcacatcgc cactttttga cttttcttct actacttttg
    14881 catcaaagcc gtattgggtt ctgtgtgctt catctgcaat tacgatgata ttatctctaa
    14941 gcgataagca ctcaaataca ttatcatttt ctggactaaa tttttgaata gtagtaaata
    15001 ccactccacc actagctacc cttaaaagct cttttaaatg ctctttatcg tttgcttgtt
    15061 ttggctcttg tcttaaaagg ttcgcacaac ttgcaaaagt accaaaaagc tgatcatcta
    15121 gatcatttct atccgtgata agcaaaatcg taggattatt taaagccttt atcgctttag
    15181 cactataaaa caccatagac aaagacttcc cactaccttg cgtatgccac accacgccac
    15241 cttttttatc tccgtctttg ctacttgctg tgattgttct actaatggct ttatttactg
    15301 cgtagtattg atgatagcaa gcgatttttt tggtagtttt tatacttaaa ataccattta
    15361 aatctcttat ttgctctttt tcaaaaacta tgaaattgca aatgatatct agcaaggttt
    15421 ttggatttag cataccatct attaaggttt taatttctaa agacttgttt ggagcgtagt
    15481 ttatcccatc gctacttttc cacgccataa accttgaaaa atcagccgaa atactccccg
    15541 ccctagcaaa atacccatcg cttatcacac aaaaagcatt atatgtaaaa atacttggga
    15601 ttgtttgttt ataagtgttt atttgattat aagctgagtt tatcgtggcg ttttcatcgc
    15661 ttgggctttt tagctccatt aaaacaagcg gaattccatt tatatatagc actacatcgg
    15721 ggattttgtt ttctttagct tctgtgatgc ttagctggtt tgttgctata aattcattgt
    15781 tgcttgcatt attaaaatca attagattta tgatatcagc tctgctttcg ccgtcttttg
    15841 tagtgtttat atttacccca tttacaagct tataatgaaa gttttcattg ctatctaaaa
    15901 ggctaagatg atttttgctt tttagctcct tataaatttc attagctttt gataaatcaa
    15961 gctgtggatt tagcctacaa agtgcattta caaggctagt ttctagcaaa acttcatcag
    16021 tggctcttac aggcttttca tagcaccacc catgctcaag tagtgatgat ataacaaact
    16081 gctctaaatc aaactcacta gtcttcgcct tgctcatttt tagttatcct tttttatcaa
    16141 atctactttg ttaaagctat caataagttc attcataaaa tcaacatgat aatcttctaa
    16201 atcatttttt gtatattttt cacgagccct aaatgcgttt tggcaaattt ctttttttct
    16261 tgattcagtg tttaatataa atctttcttt ctcttcattt ctatcagcaa tacatttttc
    16321 taaataatcc aaaattgaca tatttttaaa tgctagtttt tttctatcac ttatctgaga
    16381 gtttgttatc gtattgtatt gtttatactt aagtataata ttaactgcat ctactattat
    16441 ttttataggc atgaaatctt caatctccca aatatctcta ttattttctt gtatcgattc
    16501 tccatatctt tttaattttt ttgcatctag ctttatgttt ggatataaat tatcttttga
    16561 tattttattg tattgttttc taccttcttc atcgttatca aaaatacata taaaatatgg
    16621 tttaaaagaa gtataactgc actgattatt aaaatattct aaaaaacctg ctattttagt
    16681 tgcaccacca gaatgtatta tatttggcat agataaattt aaaatttcta ttagcatttg
    16741 caaatatttc ttatcttctt ctccttcaac taaaatatta taaggcataa tatcccaatt
    16801 atcattggtt tctatgccta aatgtttttt aataacagat aacttttcaa acgcagtgcc
    16861 tatataaatc ggttttgtgt taatttcttg aaatactcta cctttttttc tagcataaat
    16921 cttttcttct tttgtcaatt taaacaaatg agtattgact aaattattaa aatctacaaa
    16981 gtattgagaa tgtgttgtca taattatagg ctgctttttc tctcttacaa tatttttaaa
    17041 tatttccata atcttttttt gtaattttgg ctgcaaaaat gcttctggtt catcaattgc
    17101 ccatattata tctgttgtaa ttttatctgt aatatattgc attaaagata aaagtactat
    17161 tctttgagca ccactccctt tatgatccat taagtggtca tttccatcgt ctaaagtaac
    17221 agatgtcata gtttttacaa catctcttaa tttttcaaat tcggcaaatc taatttttat
    17281 ttccttgtct tttaaggtgt tatcaaaatc taacatttgt tttaaatata tattaatatc
    17341 cttttctata tcttctatag ctttctttga ttgttctatg aataatttca atgttcttaa
    17401 aggctcactt tgcttttttc gtttattatc taaggctaac aaagcatcgt tttctaaaat
    17461 agcagaaatt acgctaggca tattcacatt acttgcttct ataaataaaa gtttaaaact
    17521 ttctacaata tctctagcaa ctttccattc aaccatcttt ccatttaata tatacacaat
    17581 cttatcttta tgaaattcaa cttttaaaat atgtgtgaca ttattttttg taaaatagcc
    17641 tattaattct gtttttctac caccagttga tcccttttga atatgatatg gtctatcttc
    17701 attttgatta tactccacac cattattatg attaaaaaat aaatttaagg ctctcaaaaa
    17761 attagtcttt ccaatattat tttcaccgca aattgtattt atattattat tgtctatatt
    17821 taaagtaata tccaataaag aacgaaagtt tttaacctga aat
//
LOCUS       DARGEM010000018        17670 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.018, whole genome shotgun sequence.
ACCESSION   DARGEM010000018 DARGEM010000000
VERSION     DARGEM010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17670
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.018"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..144)
                     /locus_tag="SFZ78_000513"
     CDS             complement(<1..144)
                     /locus_tag="SFZ78_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211415.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQN"
     gene            complement(131..733)
                     /locus_tag="SFZ78_000514"
     CDS             complement(131..733)
                     /locus_tag="SFZ78_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211416.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            complement(730..831)
                     /locus_tag="SFZ78_000515"
     CDS             complement(730..831)
                     /locus_tag="SFZ78_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211417.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            complement(828..1049)
                     /locus_tag="SFZ78_000516"
     CDS             complement(828..1049)
                     /locus_tag="SFZ78_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG8211418.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            complement(1046..1909)
                     /locus_tag="SFZ78_000517"
     CDS             complement(1046..1909)
                     /locus_tag="SFZ78_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8211419.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            complement(1909..2172)
                     /locus_tag="SFZ78_000518"
     CDS             complement(1909..2172)
                     /locus_tag="SFZ78_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG8211420.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            complement(2177..2842)
                     /gene="ccoO"
                     /locus_tag="SFZ78_000519"
     CDS             complement(2177..2842)
                     /gene="ccoO"
                     /locus_tag="SFZ78_000519"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG8211421.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            complement(2855..4321)
                     /gene="ccoN"
                     /locus_tag="SFZ78_000520"
     CDS             complement(2855..4321)
                     /gene="ccoN"
                     /locus_tag="SFZ78_000520"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG8211422.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKF
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            complement(4447..5127)
                     /locus_tag="SFZ78_000521"
     CDS             complement(4447..5127)
                     /locus_tag="SFZ78_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8211423.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            complement(5130..6341)
                     /locus_tag="SFZ78_000522"
     CDS             complement(5130..6341)
                     /locus_tag="SFZ78_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEG8211424.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHNVSNSFKLNEELALNHAKLRELSINLENTAKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            complement(6338..6997)
                     /locus_tag="SFZ78_000523"
     CDS             complement(6338..6997)
                     /locus_tag="SFZ78_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8211425.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            complement(6994..8112)
                     /gene="carA"
                     /locus_tag="SFZ78_000524"
     CDS             complement(6994..8112)
                     /gene="carA"
                     /locus_tag="SFZ78_000524"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG8211426.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(8112..8663)
                     /locus_tag="SFZ78_000525"
     CDS             complement(8112..8663)
                     /locus_tag="SFZ78_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG8211427.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(8756..9274)
                     /locus_tag="SFZ78_000526"
     CDS             complement(8756..9274)
                     /locus_tag="SFZ78_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG8211428.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(9267..9695)
                     /locus_tag="SFZ78_000527"
     CDS             complement(9267..9695)
                     /locus_tag="SFZ78_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG8211429.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(9692..10942)
                     /locus_tag="SFZ78_000528"
     CDS             complement(9692..10942)
                     /locus_tag="SFZ78_000528"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG8211430.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(10970..11067)
                     /locus_tag="SFZ78_000529"
     tRNA            complement(10970..11067)
                     /locus_tag="SFZ78_000529"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11031..11033),aa:Sec,seq:tca)
     gene            11207..12415
                     /gene="yedE"
                     /locus_tag="SFZ78_000530"
     CDS             11207..12415
                     /gene="yedE"
                     /locus_tag="SFZ78_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG8211431.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGIIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            12419..12646
                     /gene="yedF"
                     /locus_tag="SFZ78_000531"
     CDS             12419..12646
                     /gene="yedF"
                     /locus_tag="SFZ78_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8211432.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(12662..14131)
                     /gene="putP"
                     /locus_tag="SFZ78_000532"
     CDS             complement(12662..14131)
                     /gene="putP"
                     /locus_tag="SFZ78_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG8211433.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(14149..17637)
                     /locus_tag="SFZ78_000533"
     CDS             complement(14149..17637)
                     /locus_tag="SFZ78_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG8211434.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILVQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIKDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         5980 a         3335 c         2136 g         6219 t
ORIGIN      
        1 attttgataa gagtcaaaat aaaaatcatc ctcatacaca ggatggtgac ttgctataaa
       61 aatcgttaca atacaagcaa taattatagc caaaagtgaa agcaaaatac cataaggcca
      121 aaaacttttt ttagtttcta acattttttt tcctctttat tcttctttgt gcatagtata
      181 acaatgcaaa gcaaataaat ccatagataa gtattcttaa aatattgata gtatcacgat
      241 ttgcattacc tatagaatgt tctaattgta atcccaagga ttttgccaca cgatctacaa
      301 tatctgcata accattaagt atagcagcat tataaatatc acctttattt gtagctaata
      361 tcggcaaaat agatcctgtt ccaggataag gactaagcac agcttcttta tcaatcaaag
      421 ctaaagcacc ttttgagccc actatatcaa ctttgtgaga attttttgac aaaagaagca
      481 atatataaga ttgaggaagt tctttttgtt tatttaataa agtttcaatt tcagttttat
      541 caccaaccat aacgccgata aaaatattac ttttttggta aagctctttt cctataagat
      601 taatctcgtt acttactttt tgacttaaaa tattttcatt aaaaagcaca gcatcaagag
      661 caaaaaccct agaaggcaat aaaacaaaga agaagatagc taaaaaaaag ccatcttgta
      721 atattttttt catcctatat gaagatgatt tacggtcaaa accgaccaag cggtgattgc
      781 agcagcaaca actaaaccaa taacaattaa atattccaaa gccttactca ttgtgcttcc
      841 tttatacttc tatgatcttg ttcttttgaa ccaaacatct ttacactttg tacatcttta
      901 agactatatg gcttttgcat cacttcttgc tgagctttaa gaccccaaat agttaaaact
      961 gctaagatag caagcaacaa aaccgtagca attaacatac ctgtaacacc tgaaagagaa
     1021 aacacgcatc tattattatt ttccatcatt caccccttga aagagaaatt acatactcgc
     1081 caacagcttc tttttgaata tcattaagtg ttggaaaact cggcattgtt cctataaaac
     1141 cagccttacc actatgtaaa acatctacta caaaagctgc agaaccgtat tttgtaagat
     1201 ctgggaacat tccatcttga ccttttccat cttctccatg gcatgctgca caagttgcat
     1261 aagcttcttt accttttgct actaaatttt catttgcagt tttcttaata gctgaaagat
     1321 cttttgctac ataagcagca atagcaggga tatcttcttc tgctacacct aaatcagcag
     1381 caccaagcat ttctccacct ggaaaattca taccttttga accatgttta attacattga
     1441 ttataccttc ttcactaccc caaatattta aattttgagc tttaccattg ataccatctc
     1501 ctgtaattcc atgacaagcc gaacactgaa ctaaaaagat attttgaccc attgctattt
     1561 tatcttcagg agataaattt ttaaattttt cttcaaattt tgtattatga gttgctactt
     1621 cttcattata ttgacctata cttgaaaaag aatttaaagg atatccccat agaaaatacc
     1681 aaatagccca aacaatagtc aggaaaaata ccacagccca accagtagga acagcatttt
     1741 tatactctcc tattccatcc caactatgtt cactaagctc tgactcgcct tttttttctt
     1801 tcatttgctt aaacattcta cccacaataa ccagtgtgat taaaatgata agaatagctc
     1861 caattaaaga taagagatta acattatctt ctaaatttaa ccattgcatt aagcactcct
     1921 tttactttct aatacactat catcaatatc atcttttaag gcaaggtttg cataattttc
     1981 ataatttctc tcgccttttt tttctgttct atataaatga tacaaatacg catataatac
     2041 tattgacaaa aacatcacga gtgcaaaaaa accataacct tggaaaatct cccactcatg
     2101 tttttgaact gttgctaaat caaatgtgat taaattttta atcacatcaa aaactattga
     2161 taaatgttcc atcatcttac tttaaactat ttaaataagc gatcaaagca actatttctt
     2221 tgatttcacc tttagcaaaa gcatctttta cttcttgatt tttcatttga tcaactatag
     2281 cctgagcttc agcttttact tcagcttgtg catcctccca agaaccaagt tttgttccat
     2341 tttctgcatc ataaggaaca ttgaaaactt ttttcacagt taaagcctca gcataagcag
     2401 tttcaatatc tgcattattt ttaaacatat gcttatatga aggcataata gaatctggaa
     2461 caacagaagt aggatcccac atatgatttt catgccaatc agccgttcta taatttccta
     2521 cacgagcaag atcaggtcct gttctttttg agccccaaag aaaaggtcta tcataagcaa
     2581 attcaccact tacagaatac ataccataac gatctgtttc tgatttaaat ggacgaataa
     2641 gctgtgaatg acaagcatta caactatctt taatatatac tgcacgccct gcaagttgta
     2701 aaaccgtata aggtttttta ccttcaattg gtcttgcatt ttctgcaaaa tttggtaaaa
     2761 cttcaactat gcctgcataa gcaatcacta caaaaacagc tacagcaaaa aagaatggat
     2821 ttttttctaa ccaactaaac attttctctc ctttttatgc tgccataggc gaagcgcttt
     2881 ttggttcttt atcaagcact cttccacaag caattgtttt gtaaatatta taagtaaaca
     2941 taaagaaacc gataagatac aacaatccac caatcgctct aatccaataa taaggaacaa
     3001 tagccacaac agtatcaata aagctataaa gcaagttacc atactcatct gtcgctctcc
     3061 acatcatacc ttgagtaata cccgcaatcc acattgaagc aaaataaaga actatacctg
     3121 tggtttggat ccaaaattga gcttccatta aagatttgct ataaagctct cttttgaaaa
     3181 ctctaggagt catatgataa agcgcggcca tagtcataaa tcctacccaa cctaatgttc
     3241 catcatgaac atgtcctgga atccaatctg taaagtgtgc taaagcatta acagatttaa
     3301 ttgaaagaat tggcccttca agtgttgaga acatatagaa agttgatgcc aaaatcataa
     3361 atttaatcaa tggactctcg cgaagctggc tccactcacc tttcatagta agcaagatat
     3421 taatcgctga accccaagaa ggtaaaatca atactacaga gaaaaccgaa cccatagttt
     3481 gcatccaatc aggtacagtt gaataaatca aatggtgacc acctgcccaa agataaacaa
     3541 acattaagcc ccaaaatgca aataaagaga gtttataaga gaaaatcggc tgaccacttt
     3601 cttttggcaa gaagtaataa atttgagcaa taatacccac agtaaataca aatgccacag
     3661 cattatgtcc ataccaccat tgtactaaag catcatttgt tcctgcatac attgatacac
     3721 tatgccacca tttacccatt ccagtaacaa aataagttgg tacttccatg ttgttaaaaa
     3781 gataaagcat agctatacct aaaaatgtag ctatataata ccatagagaa atataaaggg
     3841 ttttttcacg gcgaattcca ataagtccaa aaatacttac accccataaa acccaaacaa
     3901 gaacaacaag aatatctaaa ggccactcaa gctctgcata ttctttagat gtagtcacac
     3961 ccataaacaa agatataaca gctaaaacca tagtaagcat ataaagccaa aaatgaaact
     4021 taccaacagc cattaaaaat cttgactcag ccatactcac tttaagaaca cgctgaccta
     4081 tataatacca agttgcccaa atccctgaaa gcataaaacc aaaaatcaca cctgaagtat
     4141 gaagtggtct aagtcttgaa aaagtggcat attctcctgc taaataattt aaattaggat
     4201 atgccatttg aaaagctata agagttccta tagccatacc aacaatgcca aacaatatgg
     4261 tcgcaaacat aaaatatctt gcaaccgtat agtcgtaatt taatacatta cctggatgca
     4321 tcgactttct ccttaaaatt tttgataaca agagaatatt atagaatatt aattatacat
     4381 tttttcttaa aaatgataat tttgttaatc atttgttatg ttttatattt taaggctaaa
     4441 tcagtcttat ttattgatat ttatcttata acctaaactt ggcacatttt ttataaaatc
     4501 ttcacccact ttatctctta ctctttttat aaaagttcta acagcagtat cgctcacatg
     4561 ttcacctatc caaacatttt tcttaatatc ttcatgcaaa accaaagctc caggttgctt
     4621 taaaagcaaa gaaataaaag ccaattcttt tttagttaaa acaatttctc caccactgta
     4681 aattaaagtt cgtttagttt tgttaaattg atattcttcg gaaattttta caagcatatt
     4741 tgcttcaatt ttttcaccta tcagataatc taaaacttta aacaactctt ctatatcaac
     4801 aggtttaatc aaatatttat ctataccaat atcaatagaa cgcaaaagtc tctctttctc
     4861 tgaatacgca ctaagaacaa caattgggac atcatctgaa atttctttaa tctctcttgc
     4921 catatccagt ccatccataa taggcatagc aatatctgtg ataactaaat ctggcttaaa
     4981 ttttttaaat tttttaagcc cctcatctcc attttgagct ccgattactt tactaaagcg
     5041 ttcgcttaat atattaatca ttgattctct agccttaacc tcatcttcaa ctactaatat
     5101 tatcaattct ttacattctt gtgacatttc tactctaccc tctcttttag ttttaaaaat
     5161 atctcaaaac aagccccgtc ttttccattt ttaactttta tttttccttg gaaactttcg
     5221 ataatttgtc tacttatata aagtcctact cctatacctt gactaggatg ttttgttgta
     5281 aaataaggtt gaaaaatttt atctaaattt tctttatcaa tcccaccagc attatctttt
     5341 attgtaattt tcagataatt ttttccaaat tttgaaaaat ttattgttat gattttcctt
     5401 tttttgtttt taaatgcttc tattgaattt aaaatcaaat taagaaaaac tcttattaaa
     5461 ccattctcat atgccaaaac ttcataatca cttttcgaaa caatattaat atttacatga
     5521 tttttttcta tagtttcaaa agcaatttcc aaggctttat ttaaagtctc ttttataaat
     5581 acacactgct ctactccttt gttaaacaaa gttctaaaca catcaattgt ttctgacata
     5641 tttttaatca tatcttttga ttgtgagtaa atttcagcaa atcctttttc atctttaaga
     5701 ttttgcttca tttgaaacat ggcaataccg agctcattta acggttgtct ccattgatgt
     5761 gctatatcgc taatcatttg ttctaatgaa gatttcaaaa tctcttcata tgctatttta
     5821 atatcttttt catttttttc caaggcaatt tgcatttttt tctcaaattt tttacctaac
     5881 tgtataaatt cttgttggtg atttttagct gtattttcaa gattaatact taattctctt
     5941 aatttagcgt gatttagagc aagctcttca ttaagcttaa aagaattact aacattatga
     6001 gagaatgcta ctatttctat taattcatta tttttatcca atatggggat taataaagtt
     6061 tcaagataga aagttttgcc taatttatca atatttttaa aaataacttg ataaggtttt
     6121 ttatatgaaa gtttttttaa aagttcttca atataacatt cctcaacatc tggatgttta
     6181 aatattgaat gtttttttcc tataagctct tttttactat atccacttat ttgacaaagt
     6241 ttatcactga caaaaattaa atttccttga acatcagctc ttgaaaaaat tgtatttttt
     6301 tcaagagctt taaaaaactg atctttaaaa aaatctttca ttgaaaagcc ttaaaaccta
     6361 tataggcaag atttataccg taacaaacaa taacgccata cgataaataa ttaaataaat
     6421 ttttcaaaaa atcactaaaa aactgtgaaa ttttagaaaa aaataacatc gcaggtaaag
     6481 ttgatattcc aaaaatcatc attaccaaaa taccttcaaa aatattttgc ttactcattg
     6541 cattggctat aaaaaaatac accaatccac aaggaacaaa accatttgaa aatcctaaaa
     6601 atatggctga ttttaatcct ttaaaatttt tagatttttt aataattttc tttacaaaac
     6661 tatcaaaaaa aacattattt tcaataaaag ataacatatt gcctctaaaa ataagagcaa
     6721 aacccaaaat catcataaat ataccaagaa taaaaaatga caaactttga accttagcat
     6781 tgattgccaa gatattccca aaagtcccaa aaattatccc taaaacaata taagcaaaaa
     6841 ttctaaacaa attataaata aaagttaata aaaataaatt attgcttttt gaattcaaat
     6901 ttataaaaag taaattaaaa ccaccacaca tagaatagca gtgtccaaaa ctagataaaa
     6961 aagcaacgct gataatagct aaaaaatcta tactcacatc aaattcataa attctttaaa
     7021 aatatactta ctttcatgag gacctgaaga actttctgga tgatgttgca ctgaaataat
     7081 aggatagtct ttatatctta ctccttcaac attatcgcca aataaatttc tatgagtgat
     7141 atgagccact tgagctaatt cttctggaac attataatta tgattttgtg cggtaatttc
     7201 taccgttttt gtatcaagat tgatcacagg atgatttgct ccatgttgtc caaatttcat
     7261 tttataagtt tcatatccaa aagcattact taaaagctgg tgacctaagc aaattccaag
     7321 cataggaatt ttagcttctg caagtttttt aatctctgca atctcttgtt ttaaaatcct
     7381 tggctcacct ggaccattag aaagaaacac gccttgaatt tcaccttttt tatacagagt
     7441 aatcaactca tctgctttaa cattatatgg ataaacttct acttcaaaac ctacttctac
     7501 aagttcattt aagatatttg ttttaacacc ataatctata acagcaactt ttttctcact
     7561 tcttttagca tcattaaatt tttgaaaact agcgttccaa acgccttgtt tatgagaata
     7621 atttttctta gtgctaactt cttttacaaa atttacttca tcaatttttg ctgatttttc
     7681 taaggcgatt tttaaatctt ctttatttga aatttcagtt gaaattacag ctcttaaatt
     7741 gccattattt cttatcattt ttactagata tctcgtatca agttcataaa ttcctatttt
     7801 tccatgtttt tcaagataat cttgcagact ttctttagcg cgaaaatttg aaaaactgga
     7861 acttaattca cgcattaaaa caccacttgc aaaaatttcc ttgctttcat tatcattttc
     7921 attggttccc actataccaa tttctggcat ggaaaatacg ataaattgcc ctgcataaga
     7981 aggatctgaa ataatttctt gataccctgt taaagaagta ttaaatacaa gctctccaaa
     8041 aaaagtaccg ctctttccaa aagccttagc acttaaaaaa atatcatttt ctaaataaat
     8101 ataagccttc attaaaacat accttttttt ctgagctctt cttgatagag tttttcaaag
     8161 ataagatcgt attcttcgct acctggaata ggttttgttt tataattgct aattttctca
     8221 taaacctcat cttcaagttt ttcataaatt ttaagataag actctatgct tgaaaagatt
     8281 aaatttttaa ctctattttc actcactata aaattaatat aatcattctc tacaagttct
     8341 tctaaaattt gatgcgctag atgattatgt ctatcttcag aatctaaaat cacattaaat
     8401 tcaggagcta actttttctt cacaagccaa aacatatttt tacgatctac ttgcataagc
     8461 tccatttcat cttcttgttg ctctaaaagc tcttttactc tttcatctaa ttttctttca
     8521 tttagaatat ctttctctaa aacttctatt atacatacct taagcttttc taattgatct
     8581 ttaatttcta caaaagaaga attagctata tctaacatca ttttatttgc gatataagga
     8641 atatgtggta attttatacg catcttaaaa accttttatt tgataatgtt tgaaataata
     8701 gcttattttt ggtaaaagaa tgttaaaaat gaaaaatttt cattatttta atcacctaat
     8761 tactagcatt attatctaaa tttttcaaaa gcaaagtaag ctcgctagct ttttttggat
     8821 ccattttaga taaaacacct gaaattttac gcgattccaa agaaagcatt attttgcttg
     8881 catcctctgc atccatttga cttaaaacat ctgcaatggc tgcatctttc atttgggaat
     8941 aaatttcttt aaccctacct tgtgttttat cattgattga atttaaaatc ttttgttgtt
     9001 cttctacaag ccttgcgttt tcaagcttta attcttcaat ttttgccaaa gttgcattaa
     9061 cctcagcctc ttttttttct aaattttcaa gcctttcttt ttgcaaagct tcaaaagagg
     9121 ctttataagc ttctaaagat tgtcttgctt catcaaattc tctagtttgc aattcaattt
     9181 gagcttttct agcttcaaaa tactgctcac aatcttgttc agctccaaaa actacacttg
     9241 aaataaaaac taacaatata aattttttaa tcatcttttt ctcctttgaa aaaacgactg
     9301 attgcaattt catctaaaaa tttttcttca gccttggcaa gttctttttg cttttgttta
     9361 atttcctcgg cttctaaaac cttcattttt tcataatcta aatgtgcttt ttgatataaa
     9421 aactgataat gattcatttc ttttttagaa agttctactt tctccttagc tcttgccaaa
     9481 gcctcgcgtc ctacttgtgc catacttaaa ttcgatctta actctgctat agatcctgat
     9541 tttggcaata cgcctaaact ttcacactct tggcgtgaaa gttcataagc tttttcatgt
     9601 tcaagctgtc tttgtttggc ttgattaaga tttgattctg ctttatcaag ttgttgtttt
     9661 cttaccttta caacagaatt atatttactt ttcataagat gatagtatca tctctttcag
     9721 ggctagtaga aatatacttt accttaaccc ctgcaagctc ttcaagtctt gctatatatt
     9781 ttttagcatt ttctggcaat aaatcataat cttttatacc aaaaacttta tcccaaccat
     9841 ccatttcttc ataaataggt tgaacatttt ctaaatcact tggtatatag tcgatttcca
     9901 tacccttata ttcataagca cgacaaattt ttatcttttc aaaaccatct aaaacatcaa
     9961 gcttcatcaa agataaagca tcaagaccat taagccttgc tgtatatctt acagcaaccg
    10021 catcaaacca tccacagcgt cttttgcgtc ccgtgcttac gccaatctct tttccaattt
    10081 gcgcaatttt ttctccatct tcgcccttat cctcagtagg aaaagctcca tttcccacac
    10141 gcgttgcata agcttttaca atacctataa tatttcccgc ttctttagga tttaacccaa
    10201 gtcctgttaa agcgcctgct gaaatagtac ttgaacttgt aacataagga taagttccat
    10261 gatcaatatc aagcatagag ccctgagctc cttctaaaag tactctttta tcttcatcta
    10321 aagccttcca aagcattctt gtagtatctg taatataagg agttaaaatt tcattaaaac
    10381 gttttaaatc agcaagcaat tcttcagcac ttggaatttc aatttcaagc atttcaaaaa
    10441 aagttttatt agcttcaaaa tcttttatca aagcctcgca aagtctttgt ggttctaaaa
    10501 gctctccaac tctatgtcct gtacgattaa tcttatctgc ataagaaggt cctataccct
    10561 tacctgttgt tcctatggca tttttgcctt tgagcttttc ttttgcaatg tctattaaag
    10621 aatgatgttt taaatttaaa tgagctctat cgctgatata taatctacct tttaaatttt
    10681 caaattgagc catttcagca atcaatactt caggagaaac cacaactcca tttccgataa
    10741 tattaataca tcttggatgc aaaactccac ttggcataag atgaagcgca tatcttacac
    10801 catttaccca aatcgtatgt cctgcattgt gtccacctgc acttctgcaa acaaaatcat
    10861 aattttcaca taatttatca actaccttac cttttccttc atcgccccat tgaatgccga
    10921 caataatatc tgctttgctc ataaaaattt ccttgatttt acttaatatt ggcgagaaga
    10981 tgagagaatc gaactcccca aagaatagtc aactatcctt tcatctgatt tgaagtcagt
    11041 ggcgatcacc agatacgcta atcttccaaa gtgataatta tagcgatttt taatgaaaaa
    11101 caaaataaat ttatcaatat tctttttgac ttcatattaa atttaagcta taatctcact
    11161 cttttttagc atcaagtttt gatgattaca tttttaggat ctttctttga attcttttaa
    11221 acaaaaatat ttaatcaatt tttgggacaa ttcccgttct atgattgcac ttggaatttt
    11281 aagtgcagtg tattttggga tttttggtgg cgtttgggct gttactggag aaatgacacg
    11341 ttggggtggc gagtttttag agcttttagg tatgaattta gatggatatt cttattacca
    11401 aaagcaaaat ttaaatggaa cccctttaac aagaactgat ggtattatgc tcataggtat
    11461 gtttataggt tgtttagtag ccgcactttt agctaacaaa gtcaaatttc gtctacctgc
    11521 tagcaatata agaatttttc aagcaatagt aggtggaatt ctttcaggat atggagcaag
    11581 acttgcattt ggatgcaatt tagctaattt ttttacaggt ttaccttatt tttctttaca
    11641 cacttggctt tttactgttt ttatggtttt aggaatttat ctaggagtga aaatttgcaa
    11701 cacttccttt tttaaaccta aagctaaatt agaacgtgta aataaagaaa acttgccgtt
    11761 aaacaagcaa agtttgcgta caaaattata ttttaactta ggcatattgc ttttcatagc
    11821 ctttttagtt tgggtgtttt atcttgtttt tacaaatggc aatatcagca cacaaaacaa
    11881 acaaagtctt ctagctttag cactgatttt tggttttgtt tttggctttg ttatttctag
    11941 agggcaaatt tgttttactt cttgctttag agatttattt ttatttggta gagataatgc
    12001 tataaaaggc gcattaatcg gtataattat cgcctcttta atcgcttttg cttttatctt
    12061 gcaaggtcat actagcaaac tcatagaact ttctcctgct gtagctgtgg gagcattttt
    12121 gtttggtttt ggtatagttt ttgccggagg ttgcgagtgt ggttggactt atcgtgcctt
    12181 tgaaggacaa agtcatttta taatagtagg aattgcaaat ataataggaa ctatgatttt
    12241 agctttaagt tatgactttt taccaaaagc ttttaaagaa ggtataaaaa tcaatctttt
    12301 aactgaattt ggcaatttaa atggattttt tatcaacctt attttattca tcttaatgtt
    12361 tgtttttgta gtattttaca aaaaacactt ttttaaaaat caacttaaag gataaacagt
    12421 gaaaattact tatagtttaa atttacaagg tgaagcttgt ccttatcctg ctatagcaac
    12481 acttgatgtc ttacctaagc ttaaaagtgg agaaattttg gaagtgcttt gcgattgccc
    12541 acaaagtatc aattccatac ctcaagatgt aaaaaaccgt ggttttaaag tgcttgaaat
    12601 cgatcaaagt ggacccacac taagattttt aatccaaaag ccttaaaaaa ggcttttatt
    12661 ctcaaagctc ttttaacatc ttttcataag ctgccttagt tccagatctt acatttgtaa
    12721 acaaacttgc aataataatc accaccgaag ctactaaaaa ccctggaact atttcataaa
    12781 gacctgaatt tgcaaaattc ttccaaagca ccacagtagc agctcctgtt atcataccta
    12841 agatcgctcc tactcttgtc atcctactcc aaaataaaga aaaaagcatt acagaaccaa
    12901 aagaagctcc aaatccagcc catgcataag aaactatact caaaacactt gagtttttat
    12961 cagtagaaat caaaaacgct attacagcta ccaataaaac acctaattta cctaaattta
    13021 atacaatatg acttggtgca tcttctctaa aaatcttttt ataaaaatct tccgctatag
    13081 tagaacttga aaccagcaat tgtgaacttg ccgtactcat aatagccgct aaaatagcac
    13141 tgagtaaaat acctgctatc caaggattaa ataaaagctg cgacatcacg atgaaaatct
    13201 tttcaggatc ttgcaaactt aattcaaatt tatgcacata agctatacct aaaataccta
    13261 tcatacaagc acttaaaaga caaaccgcca tccaagcaat acctataaaa gtggccatag
    13321 gaatatcttt agtagaacga atcgacataa aacgcactaa aatatgtggt tgaccaaaat
    13381 aacccaaacc ccaagcaagt gcagatataa tgcttacaat tcctactcct tcgcccatag
    13441 ataaagcttg tggctttatt tctcttacta tattcatcgc ttcaccaaaa ccacctaaat
    13501 gataaagcat aaccaaaggt acaataatta aagccatcat cattaaaagc ccttgtatca
    13561 tatccgtcca acaaaccgcc ttatatccac ctaaaaaagt ataagcaaca ataataatcg
    13621 ttccagtagt taaagcataa tcgtatctga taccaaaagt actttcaaaa agttttgctc
    13681 cgcttacaag ccctgatgaa acataaaagg taaaaaatat caaaattacc accgcacata
    13741 caatgcgcag tatatgttta tcatcatcaa aacgagtttc aaaataatca ggaatagtca
    13801 aagaatttgc aatcacactg gtataaattc taagtctttt tgccacaaaa atccaattta
    13861 aactagctcc tatagtaagc ccaattgcaa tataagaatc tataaaacca cttacatata
    13921 aagctcctgg taaacccatt aaaagccaac cactcatatc agaagcccct gcgctaagtg
    13981 cagatatcac aggccccata gtacgcccac ctagaaaata atcctctgaa tttttatttt
    14041 gcttataaaa ataaaaacct atataaagca ttaataaggc atacactaca aacatcactg
    14101 ctattggggt attaatttga accacttcca tcaatctctc cttgatcatt aagatattgc
    14161 tctaatgcct aaatttccat aacgatgaaa agatatactt aaagcttttt cattaaaata
    14221 atttaaaagt tcaaaacgac catttaataa tggcttttct cttataatga ttttagcaag
    14281 ctttgcagcc tctttataaa tctcatcatt tacatctggc tttgctaaat aacgcactct
    14341 ttcatattct ttaatactct tgataaaatt ttctttattt tcttttaaaa acaatacttt
    14401 tgctcctatg ctttgaacaa ttcgttctat catactaaca tcttgttcat cataactgat
    14461 acttagatca atatttgcaa tatttgcacc taaaaccaca cctaaaacat cttttaagct
    14521 ttcatttcca caaagtctta aaaccatatt ctttatttta gtataagaaa aaagattatc
    14581 ttctccacga atattgacat aatcttttga aacactaaac tcgtttttat aatgataagc
    14641 ataagattga gacattttaa ttaaattgtt tataaaatct tgtgcttctt ttaaatctat
    14701 ttgtgctaat ttttttgaaa atttatcttc aattaaatga tcatcaaaat cttcttgctt
    14761 aatctctaaa aattgagtga tataattata aattcccact tttctaccca aacctatagc
    14821 tgatttttta atcccaccaa aaggttgacg cagcactata gcccctgtgg ttggtttatt
    14881 gatataaata tttcctgctt ctatgtgagt gtgaaaatac tcccattctc tttcatctaa
    14941 gctttcaaaa cctgcagtta aaccataacc tgtggaattt actatatcaa tagcttcttt
    15001 taagtcttta gccttcatca cacttaaaat cggtacaaaa agttcattca tatgagtaaa
    15061 atcacccttt ttagtgccat attttatgcc tggagtcatc aaataaggat tatcctctaa
    15121 aaacttaggt tttaatgccc attcttcata aggttgtaat tcatctaagg ccttttgaac
    15181 tttagaactt ggcttatcag ctaaagtacc taatttattt ttaaattcaa aaggattgcc
    15241 cactgccata gaactcgcag catccactaa agtcttttta aattcttcat catgataaac
    15301 ctcttcttct aagactagca aagaagtagc tgaacatttt tgaccgctat tgctaaaagc
    15361 agaatgaatg atatttttaa tcgcactatc acgatcagca aatttagaaa ctatagtcgc
    15421 attctttccg ccagtttcag cacttaaaag caaggttgga ttagctttta acatggcata
    15481 agcagtatcc tctcctcctg taagaattga aaatttaatc gcttcatcaa taagtaaata
    15541 tttagaaata tcacttcctt ttgaaggtaa gaaaatcaaa gcatcttttg gaatacccga
    15601 atcccaaaaa cacttacaaa gcatataacc tgttagagtt gaaagtgaag aaggtttgta
    15661 aatcaccaca ttacctgcgg ctagtggtgc agctatagta cctactgaaa ttcctatagg
    15721 aaaattccaa ggagctatgg taacccctat acctttaggt gtgaatgtaa cttttggatt
    15781 ttgtttttta agctcttcta aagagtgcgg ataaaactct ataaaatcaa tagcctcgct
    15841 tacttcagga tcgatctcta aaaaggtttt gcccacttct aaagctgcca aacctatcaa
    15901 atcccctctt ctttctctca tcagttttgc acttttggct aaaatttgat aaatttcatc
    15961 atgacttttt tgtgtaaatt tggaattttt agctacttct aaagcttgtt tgatttcttt
    16021 ttctcctgct aaataagcct ttcctataac tctatctttg atcttatctt taacttctaa
    16081 aacatttaaa ttttctgctt taaaatcaag ttcgcctata acaggataaa catcataatc
    16141 ttttaaattt tcatatttag ttttaatttc tttagcccac gctctatttt gtactaaaat
    16201 aaaatccgta tcgctttcat tgctaaattt tttactttca taagaactta tgatatttga
    16261 ttctttattt ctatcttgct tacgatgtgt agtattatca agagttttta tgccttctaa
    16321 agattttaaa aaaagttctt tttggatatt ccagttctta tctcctactt taagattgaa
    16381 aaaataacgc ataaaattat cttcacttgt attttcatca aggcgtctta caagataagc
    16441 aatggcattg ttaaaatgtg cttcatcgca aactggggca taaaggatta gatcatgcat
    16501 tttagataat tcataagaac attgcaaact cataccttca agcatttcaa aagtaaaaga
    16561 atccaaagca cccacttcac ttatgcgtgt ataagcataa gcaatctcaa agatattatg
    16621 acttgcaatt cctatgttga tgtatttata attatctcct tcaagaataa aatcaagcat
    16681 tttattataa ttactatcag tatctatttt tttgtaaaaa gtaggaagct cccaacccct
    16741 ttgagacgca atggtttctt cactttccat attagcaccc ttaacaaaac ggatcttaat
    16801 aggcttcata ccttttaaaa ccctctcttt tgaaaaagca aaaagttttt taagatactt
    16861 ataagaatca ggaatataag cttgcaaaac aatccctgct ttaatatcaa atttagccac
    16921 actttccata aaagctgcaa cggtgagctc taaatcccta aattcttcca tatcaagatt
    16981 gataaattta gatacacctt gttttttctc ttcttctaag gctaaagcat aaagataatc
    17041 tagtcttttt acgacctctt ctttagaata attaaaatct ataatattaa tttgtgaaaa
    17101 aatagtagta atttttatgg aaatataagt gatatagctt gattttaagg cttcttcgta
    17161 tttttgcata cgatatttac tctcagcttc acctaaaacc tcttcgccga ttaaattcac
    17221 atttaaggta attttatctt gctcttttct tttcttaata tgtggttcta aaacactagg
    17281 atttgcatct agaaccatag ctttagtatc ttctcttaaa tgtttgacaa aaaaaggtac
    17341 acttaaatta ggagcaaatt tgccaaaatt taaaaagcta aaaagtagga atttttcaaa
    17401 agtgctaaaa aaatccgcta tgccatattt actcaaagta tattctataa gctcaaaact
    17461 tgcattttta tctttacatc taaaagaacg atctaaaagc tctataagca taactttatt
    17521 tttgggatta ttaagaagtt tttgcatttt agcatgaaat tctttttcag aatttgaaat
    17581 attggcttct atttgtcctt gtaattcttc agctaaggct aaagcttttt gtatcatttc
    17641 gtatctccta agataaaata aattttaata
//
LOCUS       DARGEM010000019        17371 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.019, whole genome shotgun sequence.
ACCESSION   DARGEM010000019 DARGEM010000000
VERSION     DARGEM010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.019"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            120..1511
                     /gene="fumC"
                     /locus_tag="SFZ78_000534"
     CDS             120..1511
                     /gene="fumC"
                     /locus_tag="SFZ78_000534"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG8211435.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(1541..2584)
                     /locus_tag="SFZ78_000535"
     CDS             complement(1541..2584)
                     /locus_tag="SFZ78_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG8211436.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSIIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(2588..3595)
                     /gene="ruvB"
                     /locus_tag="SFZ78_000536"
     CDS             complement(2588..3595)
                     /gene="ruvB"
                     /locus_tag="SFZ78_000536"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG8211437.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            3686..4096
                     /locus_tag="SFZ78_000537"
     CDS             3686..4096
                     /locus_tag="SFZ78_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG8211438.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            4097..4455
                     /gene="ssrA"
                     /locus_tag="SFZ78_000538"
     tmRNA           4097..4455
                     /gene="ssrA"
                     /locus_tag="SFZ78_000538"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            4686..6934
                     /locus_tag="SFZ78_000539"
                     /pseudo
     CDS             4686..6934
                     /locus_tag="SFZ78_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(7077..9161)
                     /locus_tag="SFZ78_000540"
     CDS             complement(7077..9161)
                     /locus_tag="SFZ78_000540"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG8211439.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            9349..9864
                     /gene="nrfH"
                     /locus_tag="SFZ78_000541"
     CDS             9349..9864
                     /gene="nrfH"
                     /locus_tag="SFZ78_000541"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG8211440.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            9879..11711
                     /locus_tag="SFZ78_000542"
     CDS             9879..11711
                     /locus_tag="SFZ78_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG8211441.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            11846..12400
                     /locus_tag="SFZ78_000543"
     CDS             11846..12400
                     /locus_tag="SFZ78_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211442.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEFLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYSITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            12464..12553
                     /locus_tag="SFZ78_000544"
     tRNA            12464..12553
                     /locus_tag="SFZ78_000544"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12498..12500,aa:Ser,seq:gct)
     gene            complement(12626..13618)
                     /gene="ceuB"
                     /locus_tag="SFZ78_000545"
     CDS             complement(12626..13618)
                     /gene="ceuB"
                     /locus_tag="SFZ78_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG8211443.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAIDALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVIVGNK
                     ERAQGILDNVLVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(13631..14386)
                     /locus_tag="SFZ78_000546"
     CDS             complement(13631..14386)
                     /locus_tag="SFZ78_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211444.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELNNLRNEFLDTLSGGQKQRVFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(14383..15321)
                     /locus_tag="SFZ78_000547"
     CDS             complement(14383..15321)
                     /locus_tag="SFZ78_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG8211445.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(15314..16282)
                     /locus_tag="SFZ78_000548"
     CDS             complement(15314..16282)
                     /locus_tag="SFZ78_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211446.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(16368..17357)
                     /locus_tag="SFZ78_000549"
     CDS             complement(16368..17357)
                     /locus_tag="SFZ78_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG8211447.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
BASE COUNT         6071 a         2587 c         2881 g         5832 t
ORIGIN      
        1 gaatagattt tctcataatg cctatgaatt gcatttaatg agttcagtag gaaaacgttt
       61 ttgaaagtat ttattttttt agcttataat aaataaaatt ttaatcaaag gaaaaaatta
      121 tggaatacag agttgaacat gataccatgg gtgaagttaa ggtcccaaat gacaaatatt
      181 ggggagctca aactgaaaga agttttgaaa atttcaaaat cggttgcgag aaaatgccaa
      241 aggttttaat ctatgctttt gcaaatctta aaaaatcttt agctttggtc aataacaaac
      301 ttggcaaact tgatgatgct aagaaaaatg ctatagttca agcttgcgat gagattatcg
      361 caggtaaatt tgatgataat tttccacttg cgatttggca aacaggttca ggcacacaaa
      421 gcaatatgaa tatgaatgaa gttattgcaa atcgtgccac tgaaatcatg ggcggggatt
      481 ttcgcaaaga aaagcttgta catccaaatg atcatgttaa tatgagtcaa agttcaaatg
      541 atacttttcc aacagctatg agtattgttg cggttgagca agtagagaaa aagcttatcc
      601 ctgcgcttga tgagcttatt gcaacttttg aaaaaaaagt aaaagaattt gatagtatta
      661 tcaagatagg acgcacgcat ttacaagatg ctactccact tactctagca caagaattta
      721 gtggatatct ttctatgctt ttgcattcaa aagagcaaat catcgcttct ttaccaactt
      781 taagagaact tgccatagga ggaaccgcag taggaacagg gcttaatgcg catccagaat
      841 taagccaaaa agtaagtgaa gagctaactc aacttatagg tacgaaattt gtttcaagtc
      901 caaataaatt tcatgcttta acaagtcatg atgcgatcaa ttttactcat ggagctatga
      961 agggtttggc tgcaaattta atgaaaattg caaatgatat aagatggtta gcttcaggcc
     1021 caagatgcgg tcttggtgag cttatcatcc ctgaaaatga gccaggaagt tcgattatgc
     1081 caggtaaggt aaatcctacc cagtgtgaag ctgttactat ggttgctgta caagtgatgg
     1141 gaaatgatgc agctatcgga tttgcagcaa gtcaaggaaa ttttgaactt aatgtgttta
     1201 agcctgtgat tatttataat ttcttgcaaa gtcttgattt gttagctgat tctatgcatt
     1261 cattcaatat ccattgtgct gtaggcatag aaccaaatcg tgcaaaaatc gatcataatc
     1321 ttcataattc tttaatgcta gttaccgctc taaacccata cataggttat gaaaacgctg
     1381 ctaaagtagc caaaaatgcc cataaaaaag gtatttcttt aaaagaaagc gcaatggagc
     1441 ttggtttggt tagcgaagaa gatttcaata aatttgttga tcctactaaa atgataggcc
     1501 caaaagccta gaacataaaa cttgcctttt ttaaggcaag ttaaattaaa ttcttatctt
     1561 ttaaaatcac atacattctt aaagttgata caaaaaaagt taaaatcgca ggacctagta
     1621 taatacccca aaaaccaaag gttgaaattc ctgctatcat ggccaagaaa attaaaagtt
     1681 cgttgatttt ggttggggtt tttacaagtt ttttgttgat ccatttgatg attaaaggtt
     1741 tgattaaagt atctgctata aaagaaatta caattataga ataaataaaa ataacaagag
     1801 ctgagttaag attgtttgag gcaaattcat aaagacttac aggcacataa attaaagctc
     1861 ctcctatagc aggtatgaga gaacttacag caaaaattac tcccattaaa attccatcat
     1921 aaccataaaa tattgtgatt aaaccaaaaa gtgcaccttg aaatattgct acaattacca
     1981 tagagtaaag cacaacagcc ataacattac ccacttcgct taaaacatca tcgagttctt
     2041 ttttatcaat aggaatgatg gatttaagat agataacaag ttctgttcca tatagatttg
     2101 caaagaaata aaacacacaa attaaaacca tatctataag aaatttagcc cctgattttg
     2161 taaaacttga agcataactt agaatttgtt tagaaatact atttaaatct atagaagcta
     2221 aaaattcttt aattttaggt tctaaaaaat taaagctttc aggcaaggtg aattgatagt
     2281 ttttgacata atcaagtgtt tgtgtaacta aattaatatc aaaattcttt aaagctttgg
     2341 caagttctat catagcataa acaaaaggtg caaagaaaag caaaaccata caagctgttg
     2401 taagaatgga agctaaaaat ttatgtcctt tagtaagatt taaaaatttt gcattgatgt
     2461 ttgaggtagc taccgccatt aaactagcta tgataattac aagtaaaaaa cctttaaaaa
     2521 ggtaaagtaa aagaaataaa ataactaaaa taaagcttat aagaaagaat tttccatttt
     2581 gcaaaattta ctcctcaaat aaagtttttt catagtttag ttttaaagca ctataacttt
     2641 ttgcacttgc tatacgccct tttgcagtgc gttctatata gccattagct agtaaataag
     2701 gctcgattac atcttctatg gtattttcat cttcacttaa agccgcagca atgcttgcaa
     2761 gtccgatagg tttttgttta gcagcagtta aaagttcaag atatcttaaa tccatcgcat
     2821 caaaaccaag ctcattcact cctaaagaat ttaaggcctc attagccctt ttttctgtga
     2881 taatctcttc atcattaaca tcagcaaaat ctcttaccct ttttaaaagc cttagagcta
     2941 ttctaggggt tgaacgactt cttttagcga tctcaagtgc ggctttttct tcgcaagttt
     3001 tattaagttt taaagctgct ttttgcaaga tgagagcaag ttcgctatct ttgtaaaatt
     3061 ctaatctaaa ttgcatacca aaacgatctc gcaaaggatt actaagcata cctgcacgcg
     3121 ttgtagctcc tataagagta aattttggta aatcgatttt tatggtttga gcagctggac
     3181 cactacctat gataatatca aggcggtaat cctccattgc agggtaaagc acttcttcga
     3241 tagcagggct taagcgatga atttcatcaa taaaaagtat atccccttcg ctaagattgg
     3301 ttaaaatagc ggctaaatcc ccgctttttt ctatcatagg agcggcggtt gttttgatat
     3361 ttgcacccat ttcataggag atgatattag ctagtgttgt ttttccaagt cctgcaggac
     3421 cactaaaaag tatatgatct aaacattcat tgcgtttttt ggctgcagct ataaagatat
     3481 ttaaattttt tttaatgctt tcttgaccta tataaccatc aaaatttgaa ggacgcaatg
     3541 aagtttcata agtttcatca aaggagtatt tttctatttc tactattcta tccatatctt
     3601 tgcttatatt ttggaaaaat taaaataaga ttttagctaa aatttgctag aatttacatt
     3661 aaactttaat gattatggtt taaaaatggg aattttaaca aaattagaat tagattatga
     3721 aattgacgat atagaaaaat ttttacaatt ttttagaacc atgtgcgata ggtttgaacc
     3781 tttaatcatc aagcttggaa gcgatagcgt gcgttataaa gaagccataa aagagcttga
     3841 aactttagca cacaataccg cttgggcagc aagacgctta aatcttgaag aagtgactga
     3901 tttttgtgta ttttgtgaag agatgatggc gcaagcaaat cgctttaacg ggcctgctag
     3961 tgatgaattt acggattgga tgcttttgat gagtgatcag tttgaaaaat attgtcgttc
     4021 atatgaaaat gatgattctg ttttagcggt ttttaatcct ttaattgtta atgttccaaa
     4081 tattatttct aaataaggga gcgacttggc ttcgacagga gtaagtctgc ttagatggca
     4141 tgtcgctttg ggcaaagcgt aaaaagccca aataaaatta aacgcaaaca acgttaaatt
     4201 cgctcctgct tacgctaaag ctgcgtaagt tcagttgagc ctgaaattta agtcatacta
     4261 tctagcttaa ttttcggtca tttttgatag tgtagccttg cgtttgacaa gcgttgaggt
     4321 gaaataaggt cttagccttg cttttgagtt ttggaagatg agcgaagtag ggtgaagtag
     4381 tcatctttgc taagcatgta gaggtctttg tgggattatt tttggacagg ggttcgattc
     4441 ccctcgcttc caccatcacg ctaattttaa gtaaatcata agtttatttc aaatttttag
     4501 aattttttat atgaagttaa gaacgattta ttacccttaa aactttgata tattaggttt
     4561 tataattttt cattaaaaat ttatagtttt atttttaagc ttgtttttag ggggggggta
     4621 taattattcc ttcagtttaa atttattgaa ggagaaactt atgaaaaaaa aatgcttcaa
     4681 gcaagatatt gctaagctta ggtgtagcaa ctttgcttta ttcgagtgct tttgcgcaag
     4741 aaatcaatct tacagggtct tcagatatag gaaaatattt tgaagaaaat ggtaaggata
     4801 tcaatcttaa aaatcctgat gattacaaag ggcaagattt aagtatcaca ataggtgttt
     4861 gggatttacc aaacgatgat tatgatagcg ctgattgtcg atttaacatt gatatcggta
     4921 aagacaatac tttaagcttt acacataaca ataaaaaaat cctgcttatg taacaaatct
     4981 aaacgctact gctaaagagg ttaaaacaac agatatagtt ttacaagctt ttgcaccttc
     5041 ggtgattaat ggaaatttaa ctatgactag ctcaggaggt gaagccatta ctgaggatga
     5101 aaaaaaggtt caggtataat tctttataat ggagtagttg aagaaaaaag tgctaatggt
     5161 agcttaacta taaatggaaa ttttactgcc gataaaaccc ttttttgcta cttatggaaa
     5221 ttttgttaag gtaaatggaa ctgcaaatct taaaaattca aattttggac ttatgaagcg
     5281 ctcttataca gacttagaag caaataatgt agtaatagtt caagctaaag atttcaatga
     5341 aaacatttta aaagcaaata ataacgcagg tgcattactt ttaaaattcg caagtgatta
     5401 tatctcaacc gatgttcaag gcaaagatcc tttggaagca ggaactataa tagatattag
     5461 tgatgaagat aaatacggcg atggagaaaa aggcttagta gattataaac ttagcgttca
     5521 aaactgcggt ggcaataaat gcttagtgat caatggaggt gctactgcag cggctaaaga
     5581 taagctagtt caacttcaag tagatataga tactatcgat aaattgctta aaaatgaatt
     5641 tgattccgat caagatgaag aatgggcaaa agccaaagaa gcccttgaaa aacaaaaaac
     5701 tgaacttcaa acaatgttag aagaagctga gaaaaacggc ggtaaaatcg atgatgaaaa
     5761 atacattgat ttagtaaata aaaattcaaa ttgaaatctt aactctaatg ataaagcttc
     5821 tattctagca cttcgttcta tcacagaaca attaggaagt ataggagcag atttagcaag
     5881 tagagaaggt gtaaaactag ctttagatat caaaaaagat acagacaata caggtaaatc
     5941 tgtatctaat ctaaattcag cttctagtgc agtaaatacc actatgaata tttctaatga
     6001 tgtttctata ggttctcgtg tagcaatgct aaacaatcct tttggaactt atgcttctaa
     6061 aatgaatggt cttaaatttg ctgctttaga tagcgatatg agaccaagct atgtaaatga
     6121 atataccaat agtgtttggg ctaatgcttt tggtggtgct aacattatcg atggagatag
     6181 tggtgcaatg tatggtgcta ccgtgggagt agataaacaa gctaatgata atgttttatg
     6241 gggtgcttat tttacttatg caaatgctaa aatcaaagac aataatttag aacaaaaaag
     6301 cgataacttc caattaggta tgtattctac tatcaatata gctccacaat gggaacttaa
     6361 tcttaaagct tatgctcaag tttctccaac taaacaagac aatgttcaaa tagatggtgc
     6421 atataactca gattatacaa gcaaattctt aggacttagt gctaatgcag gtcgtgtgtt
     6481 tgactttagt gataatactt tatttattaa accttttgcg ggagtaaatt attattttag
     6541 ttatactcca tctcatacag aaaatggtgc tattgctaaa gatattgatt ctatgaaaaa
     6601 caattctgta agtgttgaag tgggtgctga atttagaaaa tatatgaatg aaaactctta
     6661 tatttttgta actccaaaaa tagaacaatt tgttatcaat agtggtgatg attacacagc
     6721 taacctagct gtaaataatg ctttctttac tagtattgaa gctaacaaca agaaaaaaac
     6781 atacggacaa attatcgtag ggggtaatgt agattttaca aatcaactca gtatgaatct
     6841 tggctttggt gctaaacaaa tactagcagg taaagtagat aataaaaatg aaacttactt
     6901 aagtggtcaa gtaggactta agtataaatt ttaatcttaa aaatcatttc taaatctttt
     6961 tatagtttag aaatgattgt ttatttctat gggaaatctc ctagggcttt atcttaaagc
     7021 ccttttttat aacaaacaag taaataagtc tttagagtaa aaaaccctaa aaacttttag
     7081 ttttctttga aaagtttgga agctaagtgc gttgcacgac tttgatctgt atctttttta
     7141 agtgttttat aaattttact tacatattct tctaaggttt gttgagaatc tatgattttt
     7201 tcagaagaag gaattttttc atattctcca ttatttttaa gcttataagc taaaacatta
     7261 tcactaagtt gcaagcgtaa aaattgagct aatttagctt tgcttctttc atcatatata
     7321 ggagtcataa gttctaaacg gcgttctaaa tttcttggca tccaatctgc actcgatata
     7381 aaataatttg gctcactatg tttaaaataa aatactctag catgttctaa gtattttcct
     7441 atgatgcttc taacgcgtat gtttttgctg tattcttcat caggttttaa gcaacaaatt
     7501 ccgcgtatga taagatcgat ttgcactcct tccatacttg cttcataaag cgcttgtatg
     7561 atatcactat ccacaagaga attcatttta gctacaatca caccttcatt tttcttgctt
     7621 gtttcaatgc gtatcatttc taaaactttt tctttgattt gatttgggct cattgaaaga
     7681 gtttgaaggc gacgattttt actaaagccc gataagatgt ggaaaaagct tgtcgtatct
     7741 cttgcaaatt ctgctttgct tgtaaaataa ctcacatcag tatagatttt agcactgctt
     7801 gcattataat ttcccgtact taaatgcata taaaatttaa gtttatctcc ttgtttgcgt
     7861 atgacttgag aaaccttagc gtggacttta aaacctgtaa tgccataaat aacatgagct
     7921 ccggcatttt ctaaagcttt cgcccaatga agattatttt cttcatcaaa gcgtgctttt
     7981 aattctacca tcacagttac ttgttttcca tcacttgcag catcaattaa agcttgaact
     8041 atattggaat ttttttcaac tctataaagt gtcattctta tggaaattac ttcaggatct
     8101 ttgcttgctt ctttgataaa tttataaact ggatcaaaac tttcaaaagg ttgtatgatg
     8161 agtatatctt ctttttctac agcgtcaaaa atagataaat tttcatcaaa aggtggtaaa
     8221 gttttaggcg tgtaaagtgg gcttaaaaga tgcgtaaagg ttttatttcc tgcgatttgc
     8281 caaaggctag ggagattgag taaaatagaa tattcataaa catctttatg aaaaattttc
     8341 atgtgagtat taagaaattc tacgatttgc tcatctgcat ctttttgaat ttgcaatctt
     8401 acaaaagctc cttttctgcg aagttttaag ccttgttcta aaatcatcat aaaatcatca
     8461 gcttcttcct cttctattac catatctgca tttctagtca ctctaaatgc tgctgaagct
     8521 aagagtttat agcctggaaa aatttcttct gcgtgttgat ggactatact ttctatagga
     8581 acataaatat ttgcacttac ttcataaaaa cgaggtaaaa ctcttggaat tctaatcatt
     8641 ccaaatttta caagttcagg atgtgcttta tcgcaaattt taaccgctag tgaaaaagat
     8701 aagttgttta aatgcggaaa agggtgagta gcatcaacag ctattggaac aataacagga
     8761 aaaatattgg agaaaaaata ctcatcacat ttttgtttta aattttcatc taaattctca
     8821 taatgtttta tgaaaagatt ttctttttct aattcacttg tgatttcatt aaaataacgc
     8881 tccaaaagct ctttttcttg gtgtaagtat ttgcgtatgg cttttaattg ttgcaacggt
     8941 gtcatttcat cgctactgct tgcattaact ccagctgaaa aaagttgttt taagcctgcg
     9001 acgcgtatca tataaaattc atctaaatta gtgcaatata tagctataaa ttttaatttt
     9061 tctaacaagg gtaaattttt agaacattgg tctaaaacac gagaattaaa gcgaagccaa
     9121 gaaagttcgc gattgataaa catatcagga cttgtttgca ttaatttttc cttttttagt
     9181 tgtattttat catttatttt gaaattattg aataaaagtt ttaaattttt taggttaatt
     9241 aagagtaaat atatctttaa aattatatta aattcatcta tgttaaaatt aaaaaattta
     9301 tttctgggaa attctgtgac attgttgttt cattgaagat tttaagaaat gataatttta
     9361 aggaggaaaa ttttgaagaa aacttcgaat ctttttacta tttttcttgt tttgcttttt
     9421 gttttctttg cggttgggtt ttatactttt tataacgcta agggcacatc ttatttaagc
     9481 aatgcaagtg aatcttgtaa taactgccat attatgaatg aagtttataa cgaatacatg
     9541 gcaggaccac actctcaaaa agtcaaaggc gaaccaagag caacttgtgt ggattgtcat
     9601 ttgccacata attttgtagc taagtggata gctaaagcgc aaagtggttt aggacatgct
     9661 tatgctttta cttttaaact tgatgagttg cctacaaatt tgagtgcgac tgaaaaaagc
     9721 agaaaaatgg tgcaagaaaa ctgcatacgc tgtcatgcag attttgctca aacagctatc
     9781 aatgctacaa caaatccaca tgcagacaag tcattaaatt gtgcttcttg tcataaagat
     9841 gttggacata aacacggaat ttaataagga gaagatgaat gaaaaaaaat attttacgct
     9901 taggtattgt cgttttggtt ttacttatag cgggagtttt atggctaaat aatgatatca
     9961 atcaaaaaaa agaagatgaa gcaaataaaa atgccattgc agcaaatgct gatttttctt
    10021 tgcttagtga tgatgatcca aattttgaaa aatggggtaa ggtttttcca gagcaactaa
    10081 aaatgtattt aacggttgaa aaagaagaac ctaaggctac tgaatttggt ggtaatttag
    10141 cttattcaaa attaattcgc tttcctcaat taaccatact ttgggcagga tatcctttta
    10201 gtcttgattt caatgaagaa agagggcatt tttgggttca agtagatcaa atgaaaacag
    10261 caagaaacaa caaagatttt cttaatgctc acggccttgc tgcttttaaa ggccagcccg
    10321 cagcttgtat gaattgtcat agtggatgga ctccatggct tataaaaaat gttgctaaag
    10381 gagattttac tgcttttaac tctacaaatt attggactat gattaaaaat atcccagccg
    10441 ttgatggtat agtggaaaat tcacctgaac atgcaggtcc acatggtggt aaaagaatgg
    10501 gtgtaacttg tgcagattgt cacaatccaa atgatatgag tttaagactt actcgtccag
    10561 cagctattaa tgctttagtt tctagaggat atgaaaaaga tccagtgcaa ggcgtaaaag
    10621 ctacaagaga agaaatgaga actttagttt gctctcaatg ccatgttgaa tactatttta
    10681 aaccaacggg ggaaaaagta aaagtaatgg gtgaaactat tgtagatgat agttctaaaa
    10741 aatggtggaa tggaactcag aaaaattatg atgagtatga attttggaga gatggtaata
    10801 aagctaaaga gattgaaacc gatggtatag ttttaacttt tccttggagt gagtggaaaa
    10861 aagggcaacc atttagaatt gaaatgttag atgattatta tgataaagtt cgtggagtat
    10921 ttggagctga ttttactcat aaattaacag gggcgcaaat tattaaaatt caacacccag
    10981 aaagcgaact ttatagtggc ggtgtgcatg ctgcaaatgg ggtaagttgc gtggattgtc
    11041 atatgcctta tgttagagaa ggagctaaaa aggttactca acacaatatc acctctcctt
    11101 taagagatat taactctgct tgtaagtctt gtcataaaca aagcgaagat tatttaaaag
    11161 ctcaagtgct tgacatacaa aatagcgttg cacatgatca aagaactgca gagtatgcaa
    11221 ttgttagttt gattatggat actaaaaaac tacgcgatga actaggtaat atggaaaaat
    11281 tccaaagcga tggaaaagct gatgcgaaaa aaattagcga agaactaaaa gaagttttag
    11341 aacttcatcg taaagctcaa atgagagcag attttgttaa tgctgaaaac tcaactggtt
    11401 tccataatcc tcgcgaagct tcaagaatgt tattgcaagc tgttgatatg gcaagaatgg
    11461 gacaaactaa acttgtagaa atcgccgcag caaatggaat taaagatttt aaaacttcaa
    11521 atttaggttt tgaagatatt caaaaattta atccaggaga gctttattat aaagtagatg
    11581 ttaataatca taaagctgga gagcgttact atgcagatga aaaagatgtt aatggtaatc
    11641 ctccaaaaga acttttagag catgataaag agctcgctcc ttataattat caagtgattg
    11701 ataaaaaata attcttaagc cctataaatt atggggcttt ttctttttta ttttaaaaaa
    11761 tataaacttt ttatttaaaa ttcacttttg cttcactttg ttttgtcaaa atatcacaaa
    11821 ttttgataat caaaaaggag ttaaaatgat caataaaaat aaattgttta gacaggttca
    11881 tatctatctt agtttgttct tcttgccttg tgctttgctt tttgctttaa cgggtatagc
    11941 gtatattttt ggtattaatc aagatgtggg cttaaaagtt gagcagtatc aattgtcaaa
    12001 agttatagaa agtggtaaag aaagagaagc tttaatagag tttttaaaaa caaatggttt
    12061 aaaagtgcca tctaatacaa atataattaa aagtaaagat aaaggtataa caataggtgg
    12121 aactcattat agtgctaata taactcaaaa ttctactaat gaatacagca ttactctaaa
    12181 aacaagatct ttgcttggag atatgattat gcttcataaa gataagggtg cttggtattt
    12241 ttctgtgctt agtgtaggtt ttggtattac tttatttatg ctttatattt cagggcttat
    12301 gattactttg tttgcaaata aaaaagatag aagtaaacaa tttgcagttc ttggagtagg
    12361 ggttgttgta actttgcttt tggcttatct tagcctttga tttttcctag ctttttaagc
    12421 taggtattat ttattttttt gtataattac actttacttt attggacaga tgggtgagcg
    12481 gctgaaacca cacccctgct aagggtgcag atcttaacgg gtctcgaggg ttcaaatccc
    12541 tctctgtccg ccactaaaac tttcttgaaa atcccaagta ttttattaag tatcgaagca
    12601 agagactagc ccttgcgaag ttatattatt ttacagcgtt tttgatttct aaaatcatag
    12661 tttttaaaga ctctagccca tttccacttg ctaaatacca gtattctgga tcaagataga
    12721 tgattttttt gttttgtgct gctttggttt tagcgacaag cacattatcg agtatgcctt
    12781 gagcgcgttc tttgttgcct acgatgacat ttctatcaac aacaaaaata taatcaggat
    12841 ttttttctaa tataaattca gagttgatac tttttccgtg tgtgcctact tttatattct
    12901 catctactgc attaatccct aaaacatcgt gaataatccc aaagcgagat tgaggaccaa
    12961 aggctgaaat tttgttagaa tttgtaagaa tgataagagc ttttttatct tcatcaacta
    13021 tacttttggc tttttcaatt tcatttttaa tatctgaaat tttttctaaa gcttcttttt
    13081 ctaaaccata aagttttgca acgcttaaga cattgttttc aaaagagctt aaaaaatttg
    13141 cattatcaag acctacaaat aaagttggag ctatttcttt taacttatca taaaatttac
    13201 tttggcgtcc agaaatgatg ataagatcag gttttaaagc atcaatggct tcaaaatcaa
    13261 cttgttgtac tccacctaca ctaggtttgt ttttaaattg ttgtaggtat tttggtaaat
    13321 ttttagcagg aacgccaacg actttatcat ttaattttaa agcatcaaaa gtatctaaaa
    13381 ttccaagatc taagatcact accttagaag gatttttagg gattttattt tctcctagac
    13441 tatccttcac taaaaaacta tcaccctcat cgctcatact aataggcaaa actttcaccg
    13501 tagcagtgtt ggtttttgtt gtagaacttg cgttgttttc atttgagttt gaattacaag
    13561 ctgttaagat tagacttaaa aaaaatgcaa aaaatgcaaa aactaaagat tttttcatat
    13621 tttctccttt ttaaaaataa atacaaattt tcttaccatt aatttgactt acgggtatat
    13681 ccatatcata aatttgtttt aaattttctt gattgatgat ttcatctttt gagccttgtt
    13741 ttaaaagctt cccatctttt aaggctatga tttcatcaga ataaatcgaa gcaaaattaa
    13801 tatcatgtaa tacaacagct atacttttgt taaagtcttt gactaaattt ttcattagtt
    13861 gcatgatttg tacgctatgc ttcatatcaa gattgttcaa aggttcatca aacattataa
    13921 attcagtatc ctgagcgatg atcatggcta taaaaactct ttgcttttgt cccccgctta
    13981 atgtatctaa aaattcattt cttaagttgt taagttccat gtattctaaa gcttcattga
    14041 ttttgatttt atcgtttgta ttaagtcttc cttgagaatg cggaaaacgc ccaaaagcga
    14101 ctaattcttc aacttttaat cttaaattga tattgttttg ttgtttgaga atggaaattt
    14161 tttgtgctaa gatttgctct ttataatttt ttaaattcat tccatcgata taaatttctc
    14221 cactactagg ttttatcaaa cgacttgcta gagctaaaag agtggatttt ccagcgccat
    14281 tggctcctat tatagaagtg attttgcctt tatgaaaatc aaggctaaga tctgaaataa
    14341 tgactttatt atcataaaat ttggtgatat tttttagttt aatcataatt tattaccctt
    14401 taatacaaga tagataaaat atatcccacc taagaaatta ataaccacgc ttatagtggc
    14461 attataatca aaaactctag agacaaaaaa cacccctcca agtaaagcca aaatactaat
    14521 aagtatacaa gcgcttagca aaatactatg ctttgcagtt ttaaatagtt cataagtgat
    14581 atttaccacc aaaagcccta aaaaggttat aggacctaca agtgcggtgc taatagaagt
    14641 taaaatagct atgataatca ttaattgttt tgaaattttt tgataattta tccctaaatt
    14701 tatcgctaaa tctttgccta aatttaaagg atctaaaaat ttcatatagc gaaaaatcca
    14761 tataaaactt aaaaagctaa taatataagc aagaattaaa acatcaaaag caatattatc
    14821 aaaactagca aacattcttc cttgtattac catgaattca tcagggtcga ttagcacttc
    14881 aaaaaaagag cttaaagtgc taaaaagtgt tccaaaaact aaacctaaaa gcatgataag
    14941 ataaatactt ctatcgctac taaataaaat tttataaagt cctagtgaaa aaaccaccat
    15001 acaaactaga gtgattaaaa aattgatatc gtttttataa acacttaaat tagccgcacc
    15061 aaaagaaaag ataagagcac tttgaagcaa catatataaa gaatctaatc ctatgatagc
    15121 aggggttaga attttgttat tgcataaagt ttgaaaaatc actgttgaaa cagcgataca
    15181 aatagctact atgataatag ctgcaatttg taaaaaacga ctttttaaag catactcatc
    15241 aaagccattt aaacccacaa gtataaaaat ccctatcata ccaagtgtta aaaagcttaa
    15301 aattagcatt tttttacgca taaactttcc tttttagcaa aagaaagata aagattaaag
    15361 atcctaaaac acctgtagtg atgcttaaag gcatttcaaa aggaaagatg acaagtcttg
    15421 aaatgatatc gcaaacaagc aaaaacaaag ctccacaaag tgctatatag ataagatttt
    15481 ttctaagatt atcacctaga taaagagcta ctaaatttgg gataattagc cctaaaaaag
    15541 ggataatccc aacgcttaca atcactaaac tagtgataat gcttacaatc atcaagccta
    15601 aaaataatat cccattataa gaaattccaa gatttaaagc tatatcttca cccatgccaa
    15661 ctatggtaat tttatgagct aaaaaataag caagtataaa aagtggtaaa gaaatgtaga
    15721 gcaattcata atttccctgc ataacatttg ccatactgcc ttgtagccaa ccttggatat
    15781 tttgtatata atttaaagca taggcaaaaa aagtggttat agcactaata atacctccaa
    15841 acatcaagcc tatcaaaggt acaaaaatca catctttgag tttgattttt cttaaaattt
    15901 ggataaatat aaaagaaccc aaaagtgcaa atacagaagc aatgatagtt tgagtaaaaa
    15961 aagacgctcc agcaaaaaat attaaagaaa taagtatgcc aaatttagca caatccatag
    16021 tccctgctgt agttggggaa acgaatttat tttgcgtgag ttgttgcatg ataagcccgc
    16081 atatactaag actcattcct gtgagtaaaa ttgctataag tctaggaatt cttgtgagag
    16141 ttatgatttc tagttgagtg gagttaagat taagaatatc ttttacattg atactgataa
    16201 ctcctataaa taaacttatc attccaaaga ataaaagtaa agctataagc acttttaaac
    16261 tcaatatatg cttaaaaaac aaatctttcc ttatagtaat aataattatc aaaaatgaaa
    16321 ttgtaatgaa atttgtttta agaaatgata aaactacaaa ggatatttta gtaagaaatc
    16381 aaaaatccag tggaaagtct ttgtaagtgt ttgttatagt ctataaggct ttctccatag
    16441 ccattaaagt attgtaaata ccaataaatt ccgttattaa aaatatcata tcctagatca
    16501 acttgtatag cgcctttgtt attgtggaat ttaagattat ttcttagcat aagattgata
    16561 aaataatcat cacctaaata cgctaaattc acatcaaaat ttcccatata atgcaagatg
    16621 gcaggattat catcatcttt tttgttttca ggaattctat accaaaggcg tggaacaaat
    16681 aaaaatttat tatataaaat agcagtagat acataaattc tattccatga gcgagattgt
    16741 aaattctcat ctcccttgcc attgctttca tgcaatatac ctacgcgtag attgttaaaa
    16801 aattcataat ctttaagata taaaggaaga tctataaaaa attctggttg atagttggtt
    16861 tctctaaaag gagaagaatg ctcataaatt tgccaccaag aagtttgagt ataggctata
    16921 taatattttt catctagtcc tagtaaattt tcaaaaagtc tttttttaac actaagttgg
    16981 aatttcgcct cactcttatt attatttact cctaaagaat taaaactata agcaaaaggt
    17041 aaaaaataat tcatcttata agagctaatg ccaaggggat taaagctttc attttcacca
    17101 agataattag ccaaagctaa gcgagaaaag tcttgttttt cttctttttt tatagtgata
    17161 gaattttgca tttgtgttgc ttcgcttgag ttattttgtt cttgagaaat caaaacagat
    17221 gaatttttta aagcgagttt tttgtaaatt tccatagctt ttttataatc gccttgtttt
    17281 tcatactcta aagcttgttg taaatcacta gcccatataa aaacgcataa gcttaaaaat
    17341 aaagcaattt ttctcatttt aacttgcttt t
//
LOCUS       DARGEM010000020        17213 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.020, whole genome shotgun sequence.
ACCESSION   DARGEM010000020 DARGEM010000000
VERSION     DARGEM010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17213
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.020"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(280..729)
                     /locus_tag="SFZ78_000550"
     CDS             complement(280..729)
                     /locus_tag="SFZ78_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211448.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(745..3990)
                     /gene="ccsA"
                     /locus_tag="SFZ78_000551"
     CDS             complement(745..3990)
                     /gene="ccsA"
                     /locus_tag="SFZ78_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG8211449.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(4008..4703)
                     /locus_tag="SFZ78_000552"
     CDS             complement(4008..4703)
                     /locus_tag="SFZ78_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211450.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4690..5460)
                     /locus_tag="SFZ78_000553"
     CDS             complement(4690..5460)
                     /locus_tag="SFZ78_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211451.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5457..6509)
                     /locus_tag="SFZ78_000554"
     CDS             complement(5457..6509)
                     /locus_tag="SFZ78_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8211452.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYVAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIMAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLYIQSMPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6509..7405)
                     /locus_tag="SFZ78_000555"
     CDS             complement(6509..7405)
                     /locus_tag="SFZ78_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8211453.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7424..8533)
                     /locus_tag="SFZ78_000556"
     CDS             complement(7424..8533)
                     /locus_tag="SFZ78_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8211454.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8555..9670)
                     /locus_tag="SFZ78_000557"
     CDS             complement(8555..9670)
                     /locus_tag="SFZ78_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8211455.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9701..10135)
                     /locus_tag="SFZ78_000558"
     CDS             complement(9701..10135)
                     /locus_tag="SFZ78_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8211456.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(10144..10335)
                     /locus_tag="SFZ78_000559"
     CDS             complement(10144..10335)
                     /locus_tag="SFZ78_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG8211457.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10388..10894)
                     /locus_tag="SFZ78_000560"
     CDS             complement(10388..10894)
                     /locus_tag="SFZ78_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG8211458.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10903..11934)
                     /locus_tag="SFZ78_000561"
     CDS             complement(10903..11934)
                     /locus_tag="SFZ78_000561"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG8211459.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11934..13235)
                     /gene="flgR"
                     /locus_tag="SFZ78_000562"
     CDS             complement(11934..13235)
                     /gene="flgR"
                     /locus_tag="SFZ78_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG8211460.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDIRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(13292..13741)
                     /gene="flgQ"
                     /locus_tag="SFZ78_000563"
     CDS             complement(13292..13741)
                     /gene="flgQ"
                     /locus_tag="SFZ78_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG8211461.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(13717..14232)
                     /gene="flgP"
                     /locus_tag="SFZ78_000564"
     CDS             complement(13717..14232)
                     /gene="flgP"
                     /locus_tag="SFZ78_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG8211462.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14302..16890)
                     /gene="gyrA"
                     /locus_tag="SFZ78_000565"
     CDS             complement(14302..16890)
                     /gene="gyrA"
                     /locus_tag="SFZ78_000565"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG8211463.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFIPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(16931..>17213)
                     /locus_tag="SFZ78_000566"
     CDS             complement(16931..>17213)
                     /locus_tag="SFZ78_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8211464.1"
                     /translation="SHSAILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRN
                     YKLLKTIHEPVILVDDIVTTGSSLLEAKKVLEENKISVLFALVLADAKV"
BASE COUNT         5950 a         3287 c         2042 g         5934 t
ORIGIN      
        1 aacaaaatta tagtaataat tatactactt tgtataatta tagtcaagtg ttattaatac
       61 ttgatttccc attttttaaa ggggagctat aattttccct ttggcttacc aaacaaactt
      121 ttaactaaac ttctcttctt ctattgattt tctatatttg aaaaatttta ttttttaaaa
      181 agtatatgtt aaagtatatg ttttttgtat tattaatttt tcaagtatgt tcttttggtt
      241 attttaacta taaatcacag tcctcttgag cgcaccatat tatttatctt ctttaatttt
      301 tcttttagct aatcccatat gctcgtaagc atcaatttct tttttgtaag atccagaaat
      361 tttcttaagt tctttattta agtaacttac tgtttgtgca cttgcattaa tatttgcagc
      421 caaagcagaa acaaattcta gtttcttttt tgctgcttca tctaattctt tagaagtttt
      481 tgaaccaagt ttatgtgtct gcacataaag tttggcaagt tcttttaatt caatatccgt
      541 tagtttaaca tcggaagcag caattatcat tttatctaag tctgtatcaa attttttagt
      601 cttttcagct acatgctgct tttggctagt tttttgcttt ttaattgttt ttttgccatc
      661 acttgtaata agataagcaa tcacgcctaa aaacaataaa agcgctaaag cagcacaaaa
      721 aataaccaaa aaaatatggt tcatttaaag tttgcccaca aaatttcgct tccttcttgc
      781 aaaaaaagct aaaaccacca tcaatgcaaa tccccaataa acataattag gaatttgagc
      841 cgcttcgcct gcagcgtaag aatgaagtcc tgttaaaaag taatttactc caaaataagt
      901 cataataata acccaataag caaacatact ccataaagca aacacaaatt gattacaata
      961 ttttggaatc attctaagat gcaaaattgc tgcataaacc aaaatgctaa ctaaagccca
     1021 agtttcctta gaatcccaac tccaatatct cccccaactt tcatttgccc aaattgctcc
     1081 taaaaaattt cctacagtaa gcaaacaaag tccaaaaatc attgccattt cattaattct
     1141 tgtagcctct gtaatatttc tcaaaatatt aagattatat tttccatctt tcttaagaaa
     1201 acacatcaag aacaatgtaa agataccaag taaggcacaa agtcctaaaa atccataact
     1261 agcagtaata acagatacat gaatactaag ccaataagaa ttaagcacag gaacaagatt
     1321 tgtaatttgc ggattcattt cgcttaaatg cgcaaccatt aatacaacac cagataaaat
     1381 agaagttaat gacaaggcta taggactttt tctggagaaa aatatacccg acaaagacaa
     1441 tgcccaagct atatacacca tactttcata gccattactc catggagcat gacctgataa
     1501 ataagcacga agtccaagac ctactgtatg aattacaaaa gctaaaacat ttaaaacata
     1561 taccacttta aatataaaag agatttttaa attcggtacg accattttag aaaaaacaag
     1621 aatcaagagt aaaaaacccg caattaaata tacaggagcg agtttaacga aaatttcagc
     1681 cttattagaa aaaatttcca tttcaacctt ggttttacta ggcatgactt tatatcctat
     1741 tttttcttga tattctttga taaatttcaa gccttcatca gctctaatcc aattaccatc
     1801 tttaaaagca ttttccacgg cactaaaata attctgtatt aaagccaaaa caatatgccc
     1861 ttcatccccc ttaagagtag ttacagcaga aaaaggtgca agccaaacat tatttggatt
     1921 attttgaaca ggaataaatt taaataattc accactaaaa actaaattta caacattagc
     1981 tctttcatct agttttataa tttccttatc aaaaactcct cttgcatttg ggtttttacg
     2041 atttgcattt tcaacatatt tttgaagttt atatcggtta ttctcatcaa agaaatcttt
     2101 ataagaaata tatttagcac taggaatttc taaaatattt gcaatagcat cacgaactgc
     2161 ttgattttgt ggcattaaaa taaaaggttc catttgccat ttatctacat caacgagcat
     2221 ggaaagcata acagcgttag aattttgacc cttatagcta tcactttgat gaattttttc
     2281 taaaatttct cttgatagcg tatcaaaagg caccattctt ccatctgctg atttttgaac
     2341 tattaaagtg gcaagagctt tagcatgatt agtatttacc acaggtaagg tcgaatttaa
     2401 atcttgagca aaagtctttt cagaaccaaa agataacaat aaaataaaaa taatcacact
     2461 tgtatgtttt aaagtgtctt tattaattaa tcttgccaaa gttctaaatc tagaatgtgg
     2521 atttaaaaaa ttcataaaca ttccaagaca aagcagaaaa taacctatat aagttggtat
     2581 tttgcccgga tctttattta cagataaaac agtccctttt tcatcttgat cataagaact
     2641 ttgataaaat ctatagccat cataatctaa aacattattc ataaaaattc tataatcaaa
     2701 attttcatta ttatttttta cggtaatttc acttgcataa gaagctggag acatagaacc
     2761 tggataacga tctaatacaa aatctcttaa ataaatatca aaaggcaatt gttcataaga
     2821 aagcgcccaa gaaataaaga atttttgatc tgcaagttct atcataatag gtttattata
     2881 ttcaaaaata taaaattctt tactttcatt tttatagctt aattctaatt ttaaagcatt
     2941 agagccagtt aattctaagt ttttattctt attgcttaag gcaaaatctt taaaatgcaa
     3001 taataaagaa tttttccaat tttgaggctc gccaaaagta gaaatcaaca tagttctacc
     3061 cacttctaac caagcagatt taaaccataa ccaaaaactt tcatcttgag gtctattgga
     3121 gccttctaaa gcttcttgcg catgcaaaga agcagcttta actacaaagc tgatatcatt
     3181 aatttcatag agtcttcttt ccttagcatt tgccttttct ccaattttaa ggtctaaatt
     3241 ttgtccatct agcatactta gaaaatgtaa gttttcactt gaacttaaag ttaaattttc
     3301 atcaattttt acaaaaggtg ctttaacatt atcattcata aaagcaaagt taaccccttc
     3361 tatattctta acttcacctt tttcaaattt aacatcaaca ccttgagatc ctttttgaga
     3421 aagcatcaaa accaataaag gatcagaatt attattttct ttataagtat aatgagcatt
     3481 taagattaaa tctttatatt ttaatacagc ttgatcatca cctaaattaa gttttagttt
     3541 aaaagaatta gcaaaaggca aatttcctat ataacgatca ttaaccgcac tatagcgttc
     3601 tccatctttt atagcagaaa tacgcaaaga agttttagaa ctttctataa gtgaattttg
     3661 agtatgctct ctaataggta aaataccttc aaaaccagca tatcttgtca ttgcagaacc
     3721 cactaaaata aataaaaaag aaatatgaaa aatcattaaa ggtaattttt taagcccaaa
     3781 cattttataa cgaaacatcc cgcatagtaa attaatacca agtaaaagtt gtatatattc
     3841 aaaccaaaaa gtatcataaa ccattgccca agccgtagga gttccataag cactttcaat
     3901 aaaagttgcc aaagcacaaa aaagcgcaaa aagcaaaaac aatacaaccg aaactcttaa
     3961 atcccctatg ctttttatta tatttttcat tctttttcct ttaaatttta aagccctaaa
     4021 tatttctttc taatctcatc atcacctatt aaatttttag cctcgttttc cattacaatg
     4081 cgaccatttt ccaaaacata agcataatca cttattttta atgcagaata ggcattttgc
     4141 tctaccaaaa gaatagttat accctcttct tttaaacgca caataatatc aaaaacttca
     4201 cccacaatct ttggagcaag tcccaaagaa ggttcatcca acatcaaaag ttttggttca
     4261 ctcattaaag cccttgaaat cgcaagcatt tgcgcttccc ctccactcaa tgttccagct
     4321 aaagcatgct ttttacttgc aagtcttgga aaaagtttat acatttgctc tcttaaatgc
     4381 tcataatttt cagcattatt aaaagcacct atttttaaat tttcctctac gcttaaatta
     4441 ataaaaacac gccttccttc aggaactaaa gctatacctt tttgaactaa agtatgagtt
     4501 aaatgccttt tagtatcata acctaagaaa ttaacctcac cagttctttt aactgagttt
     4561 aaaagcgcat ttaaagttga agttttacct gctccatttg aacctataag agaaacaata
     4621 tgacctgttt ccactttaaa atcaatccct ttaacagctt caattaatcc ataataaaca
     4681 tgcaaatctt taactattag catcaaaatc ccctaaatac gcagcaatta cttctttatg
     4741 atttacagca tcgcaaagtt taccttcaaa aattgttttt ccataatcaa gtaccaatac
     4801 gcgatcacac aatttattta caaatttcat atcatgttct ataagcaaaa cgctaatttt
     4861 ataatctttt cgtaatttaa aaatgagctc agcaagttca tcactctcag agctattcat
     4921 cccagcggct ggctcatcaa gcaataataa tcttggttga gtagccattg ctcttgcaat
     4981 ctcaactttt ctttgttgtc cataactcaa gctagtagcc ttttcatagg caaattctgc
     5041 aataccaagt tcttctaata ttgcataagc cttctcttta aatacttgtt ctatttttcc
     5101 aaaacgccct aaatgcaaaa aggcttcaaa aatattatat ttcatttgtt tattaaaacc
     5161 aataagaaca ttttcaagca cattcatgct tgaaaaaagc ctaatatttt gaaatgttct
     5221 agctattcct aaatgcacaa tcttatgagg ttttaagtga tcaattcttt ctcctagaaa
     5281 ttcaaccgaa cctgaactag gtttatagtt acctgttata atattaaaaa gagttgtttt
     5341 gccagcccca ttaggtccaa ttaaagcaaa aatttcaccc tcattgattt taaaagaagt
     5401 ttcattaata gccttaacac taccaaaact ttttgaaatt tgttttaatt ccaaaatcat
     5461 tttttgctcc ttttaaaacg ctttttaatc cctctaatca catcactcaa ctcataataa
     5521 cccattatgc cttttcttgc aaaaagcatt actaaaatca gaacaataga aaaaacaacc
     5581 attctaagcc ctggcattga ttggatataa agatttaaag aatctatttt tatatttaat
     5641 tcatctaaaa atctaagcca ctcacttcca ccaataacca atatcgcacc tataatagca
     5701 cctgtagtag aaccaagtcc acctaaaaca ataataatca aaagctgaaa agtaagtaaa
     5761 aaatcaaatt gagttggaga tacggtagtc aacagacaag ctaaaagtcc gccacctaca
     5821 ccttctaaaa atgctgaagt gctaaaagct aaagttttta tccaaaaagt atttattccc
     5881 atagcgcttg cagcatcttc atcatctctt atagccttca ttgcacgacc atatttagaa
     5941 taaactatat ttaaaattaa aataaccgct acaatagcaa taccacctgt ccaatagatc
     6001 gtggaaaatt gtggaatatc taccagccct cttgagccat tagtaataga aggaaaatta
     6061 atagcagcta ttttaataat tattccaaag cctaaagtta caatagccaa ataatcccct
     6121 ctcacgcgaa atacagcaaa agccaaaatc agggcaagta aagatgaaca aattccagcc
     6181 ataattaaag ctagaataaa ggaatttgaa tggatagcta aaataaaaga actaggacca
     6241 tctaaaaaaa actgatcatt ttttgcatca gcacttaaaa gaactaaagc agccacataa
     6301 gctccaatcg caacaaatcc attgggttct agtgaaaatt gtccagttac accattaata
     6361 aggttgtaac tcacagccaa aataataaaa atagcaattt gattaacaat gtttaatcca
     6421 tagtccccaa aaatataagg agaaatgaaa ataaaaataa ttgaagcaat taaaaagatt
     6481 aaatgtgaaa ccttaattct aaccatcatt aaaacctact cttttcaaaa tttataccta
     6541 aaattcccgt aggcctaaat aacaatataa acaccaaaaa aataaaagca aatgcatctt
     6601 taaagcctga taaatctgga aaaaaagcca caacaacaac ttcagtaaat cctataataa
     6661 gtccacccaa aactgcacct actacagaac ctatacctcc taaaactgca gcagcaaaag
     6721 cttttaaacc tattaaagtt cccatagtag gttcaacaga gtaataattt gcagcccaaa
     6781 aaacaccccc aactgctgcc aaagctgaac ctagggcaaa aactatagca ataatacgat
     6841 ttgcatctat acccattaaa tttactgttt gtatatcaaa tgccaaagca cgaatagcta
     6901 taccatattt gcttttatac aaaatccata acactgctat taaaataaca aatgtaagag
     6961 caggaaccat taaagaacca taagttgtta tcactccacc aaaattaaca ctttcctcaa
     7021 aataacttgg cggtgtaaaa gttctaggtg ttgaagtaaa aagcatatta aaaagatttt
     7081 gcaagaaaaa actaataccg attgctgtaa tcaacaatga aattctagga gcctgtctta
     7141 aaggtttata agcgattcta tctgtagcta ttccaacaca agcagcaaaa atcattgcta
     7201 aagacaaagc tcctagaaaa ggaacattta gattagtcat gcaaaaaaga gccgcataag
     7261 caccaaccat cataatatcg ccgtgagcaa aattaataag tcttaacacg ccataaacca
     7321 tagtatagcc aacagcaata agggcataca tactgcctaa actaagtcca ttaacaagtt
     7381 gttgtaaaaa taaagtagaa tccataatct ttctattttt cctttaagga ttgataatat
     7441 ctttataatt ttgcttctga tttttaattt ctttaaccac tacagaacga gttgcatttc
     7501 ctgtttgatc aatactgata acaccagaaa cgccttgata atttttagtt tggtgaattt
     7561 tttcattgac acacttacta gtaagatttt caacgcaagc attcatagca tttagcatta
     7621 caaaatacgc atcagcaccc atagctgaaa aatttggaac ttcttttgtt cccttagctt
     7681 tttcataaac actgataaat tctttactta attttgtagt tggattatta gcatcaaaac
     7741 tatctgtgaa aatataaccc tcgcttgcat ctccagctaa actaataaaa gtttgatcag
     7801 caactccatc tgcagaaccc ataggaatat ttaaacctgc gagttttgat tgtcttgcaa
     7861 ataaagaagc ttcactataa taaagcggta aaaaaataaa ttctggattt aaacttttaa
     7921 cttgagctac aatagctcta aaatctttat cacctgaatt aactcttaaa attctaagaa
     7981 tttgaccacc attagacttg tactgttttt caaaagcttt tgctaaacct aaggaatagt
     8041 cagtgctttg atctactaca ataacagcac ttttgtaatt aagttttgaa aaaacatatt
     8101 ttgctaaaga tgaaccttga aaactatcca taaaacatac tcgagaagaa tatatttttt
     8161 tatcaagcaa tctatcacca gttgcagcag gagcgatcaa tggaatttta ttatcttctg
     8221 ctacgcgcat aacttgcaat gtattagcag taaccatttc ccctataagg cctataactt
     8281 tatcttgaga aactaaacga tttgctccac tcgaagattc taatttatca cctttagtat
     8341 caataatagc aagagaaacc ttatctccat tacttaaagc tgattgcatt gaatttgcaa
     8401 gtttaatccc ttctagtgcg ctttgtccat atgctgcagt agctccgcta agcggtaaaa
     8461 caactcctat tttgacttcc gcagcactta aacttaaact tagaatactt gctaaaatta
     8521 aacttttttt cattctctac ctttatttta gtaattatgg atttataatt gttttataat
     8581 tttgtttttg attttgaatt tctttaatca caacagaacg aatggcatta ccgctttcat
     8641 ctatgctaat cacaccacca acagcttgaa aatctttagt ttgatgaatt ttgctattaa
     8701 tacattcgct gctaagatta ccaacgcaag cattcatagc atttaacatt acaaaatacg
     8761 catcagcccc catagccgaa aatgctggaa gttcttttgt tcctttaact ttctcataag
     8821 ctgcaacaaa atcttttcct aattgtgtag atggattgtt ataatcaaaa ctatcagtga
     8881 aaattactcc attaacagca cttccgccaa gatctataaa agtttgattg ttaacaccat
     8941 ctcctgctgc taaaagttta tcaaaaccaa tttgtcttgc ttgtctcgca attaaagcag
     9001 cttcaggatg ataaataggc atataaacaa aatcaggatt taaactctta agttgagaaa
     9061 ccacagctct aaaatcttta tctcctgaat taataacaag tttttttata attttcccac
     9121 cattattctt aaaagaattt tcaaaagctc ttgccaaacc taaagaataa acattgcttt
     9181 gatctatgat gataacagca tttttaagtc ctaaatcctt agatacataa gtagcaaatt
     9241 tatctccttg aaaactatct ttaaaacaaa ctctacttgc atatttcttt ttatctagca
     9301 atttatctcc agatgccact ggagctatta ggggaatttt tttctcttct gctatagaaa
     9361 tagcttgaat ggtatttgga gttgtagctt caccaataat cccaaggact ttatctgttg
     9421 ctattaaacg attaactcca tttgaagttt caagcttatc tccttttgta tctattgtga
     9481 taagtttaat aacatctcca tttgaaagtt ttggctgtag cttattagcc agttcaattc
     9541 cgttaaaaac atcttgccca taagctgcca cagttccagt taaaggtaaa actactccta
     9601 tattaatatc cttagcatat aagcaattta ccatagttaa aacacttaaa gttaaagtta
     9661 gttttttcat agtattcctt ttaattatag tttttacatt ttattttaga aatatattat
     9721 gttttgtttt ttgcgcaggt tcttcttcaa gaagatcttt tacttgcaaa tcaagcgcaa
     9781 aatttccacc tttaatataa gcaataatat tatctatatc ctcgtggctt aaatttctag
     9841 cataaaaagc catttgagaa gctgttgtag aactgctact atcaagagta taacctatca
     9901 aagctccttt aatatcctca ggagacatat cttttaaaat tctagatcct ataacactct
     9961 tttcagcatt atctccatgg caagtattgc atttattttg aaaatacaaa gccttcgctt
    10021 tttccatatc atattgctta tttgcatcaa aggtataagt aaaaaatgat ttcaagttaa
    10081 taccaaaaag cgcaacaaca aatattgaac taataaacaa ccagcgtgca atcatgattt
    10141 tccttatttt attgtaattt ctgtttgtgt tttattttga tatctatgtg tttttttgtt
    10201 gtattttttt tcttttttaa tatcatagcg ataacgaaca gtccctgaaa cttctatatc
    10261 tttaaagact tcatctaacg gagctgcaaa aacaaaatga tttaaaatca taccaattaa
    10321 aaatattttt ttcattttta ttctttaaac acaaaaaaac gattatatca aaaaaagata
    10381 atccttgtta atgaccacct ttgtgtaaaa aataaagtcc tacacaaaga gctaaaatcg
    10441 atccagcaag aaaagccata tccacaggag tagcaaattt catctgtaaa accctttgaa
    10501 agaaatttac cactaagacc ataatgataa cttttgcaag cttgtctttt aattgatcta
    10561 agctatgcac ctctaaaacc ttgctttgtt ttgtttgttt aaattcttct atttcgctga
    10621 taaaaagctc ataaactcca aaagaaaaaa taaacaaaac taaagccata agataaagat
    10681 caacagctcc tataattaaa gccaccacat cctcatgcaa atccacatta gaacctgcat
    10741 caaaaaaata attataagta taaaatataa cttttaaaac atcataactt gcaataaaaa
    10801 acaatacaaa agctccaatt aaaccaaaaa ttacgggtaa aattgtaaca atacgacttc
    10861 taacaagtaa agattcaaat attttctcta acattttttt ccttatttat tttttaattc
    10921 taaccatttt tgcgcaatac gcacagcatt tgttgcagca cctacacgaa tttgatccgc
    10981 cacacaccaa agatggagta tttttttatc atacacatca gcacgaattc ttcctacata
    11041 agtttcatta gtatcgctag tcattaaggg catagggtat tttttatttt taggatcatc
    11101 tatgacaata acacttggtg ctttttctaa aatttcttta gcttttttta catctatttc
    11161 tttttcaaaa tgcatagtaa tggcttcgct atgacttctt aaaacaggca ctcttacaca
    11221 agttgccgaa acttctaaat ttttatgtaa aattttttga gtttcattga ccattttaag
    11281 ttcttcttta gtgtaatcat tatccataaa aacatcaatt tgtggaataa gattaagtgc
    11341 caaagtataa ggaaaagttt gaggttcaaa ttcatcaagt ttaaaagcaa aaaaactttg
    11401 catggcttca accaattctt gcattccttc ttttcctgct ccacttgcag cctgataggt
    11461 acttacatca acacgcttta aattaaatgc atcatttaaa ggttttaaaa cttgcaccat
    11521 ttgtatagta gaacaatttg gattagcaat aatccctgtt tttttccaat ctttaatatc
    11581 ctcaggattg cattcaggaa ccaccaaagg aacatctttt tccattctaa aatgacttgt
    11641 attatcaatt acaatagcac ctgattctac tgcaaattta gcatattttt cactcacact
    11701 tccacctgcg ctaaaaaaag caatatcaat aggattttct ttaaatacat tttcggtaag
    11761 ttctttgact ttataagctt tgcctttaaa ttctacttca ctacctacac tttttgcact
    11821 tgctaaaggt aaaatacttt ccactgggaa atcaagttca tctaaaacat ttaaaagctc
    11881 ttccccaacc gcaccagtag cacccacaat ggctattttt tgtttttttg acattactta
    11941 tcctttattt gatatttttt aattttttca tttaaaattt ttatatccat acctaaaatt
    12001 tgagaagctt gatccttgtc ataatctaca cttaaaagaa cttcacaaat caattctttt
    12061 tctaaattct ttacatcttt ttttatactt ctagcttcta agaacaaatc ttcacttgaa
    12121 atttcatcat tttcacttaa aatacaagct ctttgtacaa cggatattaa ttctctaata
    12181 ttaccaggaa aatcatattc aagtaaagca tttttagctt cttgactgag ctgtttttcc
    12241 ttaaaatcat attctttaca agtatcttct aaaacctttt gagctatacc taaaatttct
    12301 tctttacgct ctcttaaagg cgggatatta ataggaacag tgtttaaacg ataatataaa
    12361 tctgaacgaa attcgccatt ttttattttt tcatccaaat ttgcattagt tgcactgata
    12421 attcttatat ctattttgat gctttttgta cttccaagtc gcgtaatttc tttttcttgc
    12481 aaagctctta aaagtttggc ttgaatttca taaggcattt cgccaatttc atctaaaaat
    12541 aaagtgccct cattagccat ttcaaaaagc cctattttag ttgcattagc atcagtaaaa
    12601 gcaccttttt caaaaccaaa aagctcactt tcaatcaaat ttgcaggaat ggctgccata
    12661 ttaatagcaa caaaaggctt attagagcgt ttagaatgag tgtgaatata acgagaaaat
    12721 acctcttttc ctactccact ctctccaaaa aacattacag aggcatcagt tttagccgct
    12781 ttttgactta aatttaatgt tttttctaaa ttaggagaag ttgaaaaaaa atctttattt
    12841 tcttcttttt tttcattttt tttgcttttt ttatcggctg ttttttctct tatgatttta
    12901 gcacgcttaa tagcctcgac taaagtatca acatcaaaag gcttggttaa aaaatctttt
    12961 actcccaaac gaaccgcttc tatagcacgg cttaaagtag catttcctgt cataataata
    13021 aaatcatatt tattttcaca ggctttaaca aattctatgc catcaattcc tggcatatta
    13081 atatctgtaa taatcaaatc tgtattctca tctatttttt ttaaagcttc agtagcagat
    13141 ttataagatt taatattaaa ttcttcatac tctgctaatg caatttctaa ggatttgcgc
    13201 atattaatat catcttctac tatgactaaa ttcatcctaa gccttttaaa aaatttctac
    13261 tatagtatcc aatttgcgct taattttgaa tttacttttt tttaagataa taaattatcg
    13321 cattttgttc gccaaattcc acggtaaaac gcaagggtaa aattttaaca taagtttcac
    13381 tttgagcacg taataagtca gtattaacaa tatccttaac actgattcta gcccctataa
    13441 agcaatcgct taactcatct ttatgagaat ttaaaaaatt aaatttaatt gtttttggca
    13501 tattatcatc aatcaatcct aaagaagttc gaggtaaaac ttttaaatct tgatcactat
    13561 aagaaatttc acatacccat tgttcttcaa cattttcgct ttgcgtcatt gctaaggata
    13621 aattttgatt ttgatgaaag agaatgaaat ttttactaga aagctctgcc caaaaaataa
    13681 attcatcttg ggcaaaaagc ttaaagctaa gaaagattaa taagcaaaca attctttcca
    13741 cttgtctgca tcgattttaa gttctaagtt taccctataa agcccttgat taaaattctg
    13801 atcaataata cttgcatttt ttatcaaacc atttacttgc gcagtaatag ttgaacttct
    13861 aagcattgca tcttttacgg tgtctttacc attcactttc acaccataaa gcttacttgc
    13921 aagctgtctg taagcatctg taatcgctgc tctttttgct aaagctaggg cttgagcagt
    13981 agaaactgta ttcatcggag caatcccttc accaactgct gtaaaactaa gttccgtttc
    14041 gctagcatct ggagccaaca ttttttcttc tctgataata tcacgcacat catctttatc
    14101 aactttttgc acgataacat cttgagatgg ggcagtgcta tttgcacttg aatttttagt
    14161 tgcactgttt gcacttgata cacaaccagc gaaaattcct gctattgcta gcataaaata
    14221 aatttttttc atttttacac cttcaaaata ttgtaattag taaaaaataa aaagcaataa
    14281 gcgttccaac tttaaaactt attacaaatc taaaccaaag ttttcatcgc ttaactcatc
    14341 ctcatcattt tcctctttag gacacttagc gatgctaacc acctcgtcat tttccacatt
    14401 aactacaatg acaccactcg tattacgccc tgcttttcta atgctttgca tatcaacacg
    14461 tatcatcttg cctgaacttg taagagccat caaatccata gtttcatcta ctataactac
    14521 gctaataaga tctttggttt tttctgtaag tttcatacaa attacaccct taccacctct
    14581 actttgcaat ctatattctc cagcatttgt gcgttttcct ataccttttg cacttatgct
    14641 taaaatttct tgctcatcat tttctataac aactgcacct actaattcgt catttttctc
    14701 tttaaactta atagccgtca ccccacgact tacacggccg atttcacgca ctttagcaag
    14761 tgggaatttg atacacatac cttttttggt tactgcaaag agcattttac cttgtgtgct
    14821 tacactttct tcattttcaa gattttcatc atctaaattt tcaatttctt gattttctaa
    14881 attttcttca ccaccagtgg caaaaatttc atcttcatct ctttgaacaa taatagcagt
    14941 taccaactca tcattttcat ccaagttgat cgctctaact cctacacttc tgatattttg
    15001 atattcactc aaatttgtac gctttacaat accattttta gtaaagaaac ataaagattt
    15061 actctcatca aaatccgtgg ttggaataat agccatgatt ttttcttcag cttgtaaatt
    15121 aataagattt accactgctt ttcctttagc cgttcttgag ccttcaggaa ttttataaac
    15181 tttaagccaa taaagctgtc cacgatctgt tacaaacata agtgtatcat gtgtatttgc
    15241 cgtaaagaaa ctttctataa aatcatcatc ataagtcgta acggctaatt ttccttttcc
    15301 gcctcgtttt tgcttttcat attgtttact aggcacacgc ttaatataac cacgatgcgt
    15361 aatagttaca accatatttt cattaggaat caaatcttca atatcaatat catcataatc
    15421 atcttcaatt tgagtaatac gtggcacatc aaatttactt ctaatttctt ttaattcatc
    15481 gcgaattaaa ttttcaagca aggtttcact ttttaaaatt tcttcaagtc ttgcaatttc
    15541 tttcattaat tctgcaagtt cattttcgat tttttctctt tcaagtcctg ttaaacgacc
    15601 aagtttcata tctaaaatag cattcgcttg aagctcacta agaccaaatt tagctaccaa
    15661 agaatctctt gcggtattat tatcagaact atttttaatt aaagcaatca cttcatctat
    15721 attatcaagt gcaattttaa gaccttctaa aatatgagct cttgctcttg ccttttgaag
    15781 ttcaaaaatc gttcttctaa taataactgt ttttctatgg gttaagaaaa gatttaaaag
    15841 ttctaacaaa gaaaaaattt taggttcttt attgtgaatt gccaacataa tcacaccaaa
    15901 agtactttcc atagtagtag atttaaatag attgtttaaa acaatttcac tcatagcctc
    15961 acgtttaagc tctataacaa cgcggattcc ttctttattg ctctcatctc ttacttcaga
    16021 tattccttca atttgctttt ctttaacaag ctctgcaatc tgctctataa gcctagcttt
    16081 attggtttga taaggaagct catctataac aataacatct ttatttgtct ttttttcaat
    16141 atgagtttta gcgcgcactt tcacgcgacc acgccctgtg cgataagctt ctataatacc
    16201 ttttttacca taaattattc cacctgttgg aaaatctgga cctttgataa actgcataat
    16261 ctcttctaag cttgcatctt tactatcaag caaatataaa agtccatcta tcaactcatt
    16321 taaactatga ggtgggatgt ttgtcgccat acctacagct ataccacttg aaccatttaa
    16381 taataaattt ggaaccctag aaggtaagac atcaggttca ctttctgaac catcataatt
    16441 tggaataaaa tcgaccgtat ctttatctat atcttttaaa agctcatgag aaagtttact
    16501 catttttgct tcagtataac gcatcgcagc agcgctatca ccatctatag atccaaagtt
    16561 gccttgtcct gtaatacttg gatatctcat agaaaaatct tgagccattc taaccaaagc
    16621 atcataaact gctgtatctc catgtggatg ataacgacct ataacagcac ccactatacg
    16681 ggctgatttg acaaaatctg ttctactttt tgcctcatca ttttgcatag catataaaat
    16741 tcttctatga acaggcttta aaccatctct tgcgtcaggc aaagcacgac ctataataac
    16801 actcatagaa tagtctaagt aactaccttt tatagaattt tctatatcta caagttcaat
    16861 atcagaatct ttgctaaaaa tattctccat aaaaatcctt ctattagttc aaagttttga
    16921 ttatagcata ttaaactttt gcatcagcta aaacaagagc aaaaagtaca gaaattttat
    16981 tttcttctaa aactttttta gcttccaaaa ggctagaacc agtcgttaca atatcatcta
    17041 ctaaaattac aggttcgtga atggttttta agagtttgta atttctttta tgtttttgac
    17101 gaaattctaa actttttcca gaatatttaa tatgattttg tgcttttaaa acattaaaaa
    17161 caggttttac aaattttgtt ttaagatatc tagctaaaat agcagaatgc gaa
//
LOCUS       DARGEM010000021        16960 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.021, whole genome shotgun sequence.
ACCESSION   DARGEM010000021 DARGEM010000000
VERSION     DARGEM010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.021"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            23..1000
                     /locus_tag="SFZ78_000567"
     CDS             23..1000
                     /locus_tag="SFZ78_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG8211465.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1001..1987
                     /locus_tag="SFZ78_000568"
     CDS             1001..1987
                     /locus_tag="SFZ78_000568"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG8211466.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTTAKDMEVATYDLGYADGLFRYNGKGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            1990..2457
                     /locus_tag="SFZ78_000569"
     CDS             1990..2457
                     /locus_tag="SFZ78_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG8211467.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2561..4027
                     /locus_tag="SFZ78_000570"
     CDS             2561..4027
                     /locus_tag="SFZ78_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG8211468.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIILTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4055..4783)
                     /locus_tag="SFZ78_000571"
     CDS             complement(4055..4783)
                     /locus_tag="SFZ78_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8211469.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4776..5508)
                     /locus_tag="SFZ78_000572"
                     /pseudo
     CDS             complement(4776..5508)
                     /locus_tag="SFZ78_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            5591..5770
                     /locus_tag="SFZ78_000573"
     CDS             5591..5770
                     /locus_tag="SFZ78_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211470.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            5763..6332
                     /locus_tag="SFZ78_000574"
     CDS             5763..6332
                     /locus_tag="SFZ78_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG8211471.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLIKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6362..6727)
                     /locus_tag="SFZ78_000575"
     CDS             complement(6362..6727)
                     /locus_tag="SFZ78_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG8211472.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            6850..7842
                     /gene="pheS"
                     /locus_tag="SFZ78_000576"
     CDS             6850..7842
                     /gene="pheS"
                     /locus_tag="SFZ78_000576"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG8211473.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            7839..10160
                     /locus_tag="SFZ78_000577"
     CDS             7839..10160
                     /locus_tag="SFZ78_000577"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8211474.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIESLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSCKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYYKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYVCELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            10157..11443
                     /gene="aroA"
                     /locus_tag="SFZ78_000578"
     CDS             10157..11443
                     /gene="aroA"
                     /locus_tag="SFZ78_000578"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG8211475.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            11433..12266
                     /locus_tag="SFZ78_000579"
     CDS             11433..12266
                     /locus_tag="SFZ78_000579"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG8211476.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKKFKI
                     N"
     gene            12398..14068
                     /locus_tag="SFZ78_000580"
     CDS             12398..14068
                     /locus_tag="SFZ78_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG8211477.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEINVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            14068..14556
                     /locus_tag="SFZ78_000581"
     CDS             14068..14556
                     /locus_tag="SFZ78_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211478.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            14553..16136
                     /locus_tag="SFZ78_000582"
     CDS             14553..16136
                     /locus_tag="SFZ78_000582"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG8211479.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKNGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            16123..16785
                     /locus_tag="SFZ78_000583"
     CDS             16123..16785
                     /locus_tag="SFZ78_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8211480.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            16779..>16960
                     /locus_tag="SFZ78_000584"
     CDS             16779..>16960
                     /locus_tag="SFZ78_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEG8211481.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDA"
BASE COUNT         6129 a         2044 c         3003 g         5784 t
ORIGIN      
        1 ttgaaatacc taaggaaaaa cattgttaaa acgacttgct ttattaattg cactttcttc
       61 attgatgttg catgcctcag atcttgttaa aatttatctt aatcaaggat tagatgctgt
      121 tggtgtagcg attgaaaaag aattaactca aaaggatttt tggttaagtg aaataggaga
      181 taaaaatatt tcacttggat actatgatga taatgttgct atcgtgctta caaataaaac
      241 agataaaatt ctccgtgttt attcttacga ggacggaaaa ataagaaaag attttgaaca
      301 aaaagaaata ataactggat taatgggtga taaaaaaata gaaggagatt tgaaaacgcc
      361 agtaggtttt tatgagttag gccgtaagtt taatccaggt gatccttatt atggtccctt
      421 tgcttttgcc acaacttatc caaatttact tgataaagta caaggaaaaa caggtggtgg
      481 tatttggatc catggctatc ctttagatgg ttctagactt gatgaattta aaacaagagg
      541 gtgtattgct ttatttaata ataatttgga gaaatttgca aaagttgtgc aagataaaaa
      601 agtttttgtt atgacagaag aaaaagaaaa aattagagct aaaaaggatc aaatcgctag
      661 tttattggct gatcttttta catggaaact agcttggaca aatagtgaca ctaatgccta
      721 tttaagtttt tatgatgagc aagaatttaa acgttttgat aaaatgaaat ttgaacagtt
      781 tgcttccatg aaaaaatcta ttttttctcg taaagaagat aaaaagatta aattttcaga
      841 tattaatatc agcccttatc cgaatttaga aaatgaaact atgtatagaa tttcatttta
      901 tgaggattat tacactaaaa actatcagtt tagaggcgat aaaattttat acgttaagat
      961 agatagtaaa ggtaaaatga aaattttagc agagcaataa atgtctttaa taaaaattga
     1021 tcaaaaagct tatgaatata atttaagaca tattgctaaa aaaataggga gttttcaaag
     1081 attaatttgt gtttttaaag ataatgcata tggacatgga gctaagcttt tagctccatt
     1141 agccaaaaat ttaggagttt cttttgttgc tgttaagagt gaagaagaag ctcgagaaat
     1201 cgaagaattt tttgagaata tattaatact atcacatcgt cctcatggta atgaaaattc
     1261 tcgatttatt tatgctttaa atgacatttc tcaagtaaaa aattacaagc aagatataaa
     1321 aatacatcta aaaatagata caggcatgca tcgcaatgga atttgtgtag aaaatttaga
     1381 gcatgctata aatcttattc aaggtagtga tttaaaactt actggaatgt ttacacattt
     1441 tgctagtgca gatgaaatgg atggaagttt ttttgttcaa aaagaaaatt ttcaaaaagc
     1501 taaaaagata gtaaaaaaat atttttcaaa tttattattt cattcgtata attctgcagc
     1561 attatttaga gggaaaattc ctgaagatga atattgtaga gttgggcttg ttcaatttgg
     1621 atatggggat tcaaatttaa aaagagtttt aagtttgtat gctcatagat taagtcaaag
     1681 gattttacaa aaaggacaga gcataggata tggaggcatt tttactactg caaaggatat
     1741 ggaagtagca acttatgatt tgggttatgc tgatggtctt ttccgttaca atggaaaagg
     1801 ggagttggtg cttggaaatg gaaaaacaat gcttggaaag atgtcaatgg atagtttttc
     1861 ttgtgaaaat tctggtgagg aaatttgcgt gtttaaagat gctgatattt gggctgattt
     1921 ttttcatact attaactatg aaattttagt aaaattaaat cctaatattc aaagagttct
     1981 agtataaata tgtttaatat agttttagtt caccctagaa taccgcaaaa tacaggtagt
     2041 ataggtagaa tgtgctttaa tgctggtttt aaacttcata ttgttaaacc aactgttttt
     2101 gatatttcac aaaaggctgt tagaagggca ggacttgatt actgggataa attagagcct
     2161 attatttggg agaatcttga agaatttttg aatgaaaata tgatttataa aaatcgcttt
     2221 tttttcgcaa caactaagag tcaaaaagct tattttgatg cagaatttca aaaaaatgat
     2281 ttcttattct ttggaagtga gagttatggt ttgcctatgg aattaatgca attaaactgg
     2341 gaaaatgcta taactatacc tatgaaatct tatggaagaa gtttaaattt agccacaagc
     2401 gttggtataa tctcttatga agctttaaga caaaatttta gaaattttgc ttcttaaaag
     2461 tttcaaattt acacaatagc ttaaaacaaa taaaatcata aagtcctttt tataaaaatt
     2521 atgttaaagt aaaatttaga ttattttttg aggagtttgg atgaaattag atattatgct
     2581 agattttgcc aataaagcgt ctgatattat agctaataag attgtcccaa atacagacat
     2641 tattatggta gttttactta ttgtttgtgg gctttattat agttttttaa ctcgctttgt
     2701 tcagtttcgt atgttgagtt ctgtatttaa aattcttaca gaaaaaaacg aaggacacgc
     2761 taaagaacat atttcacctt ttcaagcatt aatgatctca actgcttcta gagttggtat
     2821 aggaaatatt gctggaattt ctttggcatt ggctacaggt ggagctggtg ctttattttg
     2881 gatgtgggtt atggcatttt ttggtggtgc ctcagcattt gctgaaagta ccttagctca
     2941 agtttacaaa tcaaaagatg atacaggcgg gtttaaaggt ggtccagctt attatataaa
     3001 aaaagcctta ggctcacatt tttttggagc tttttttgct tttattctta ttattactta
     3061 tgcttatgga tttaatggac ttcaaagtca aacaatgact tcgtctttta aagtttatta
     3121 tgatatgttt aatccaaatg ctgctgtaga ttttgcatca agttcttggc caatgattat
     3181 tggtattatt ttaactattt ttggtgcatg gatgtttttt tctcaccata ctaaaatagg
     3241 taaaattagt tctttaattg ttccttttat ggctttagct tatgttttac ttgccgtgat
     3301 tgctgtttta atgaattttg ataaaattcc ttctgtgatt catatgattt tacaaagtgc
     3361 ttttgatttt aaagcgattt ttggtggttt tgctggttct gctttggtta tagggattaa
     3421 aagaggactt ttttcaaacg aagcgggtat gggctcggca cctaatgcag ctgcagcagc
     3481 tttgacaagt catccagcta aacaaggtgt tatacaagcc ttttcagttt taattgatgt
     3541 tgttgtttgt acaagttctg gatttttagt tcttttttct atggcatatt taggacttgg
     3601 agaaagtaaa attgatggtg gaatgccttt agttcaagaa gctatgcgtg agtattacgg
     3661 tagctttgga atccatttta ttactatagc tattgttctt tttgcaataa cttctttaat
     3721 aggaaattat tattatgctc aagctaatgt taaatattta acaaattcca aatttgtaat
     3781 gaatttgttt agaattacag ctgtggctat gatttttata ggctcacaaa tgaatttaaa
     3841 acttgcttgg aatttggctg atttgactat ggctttcatg gcaacgacaa atattatatc
     3901 tttattgctt ttaggtggta tagtaaataa agttttaaaa gattttaata tgcaacaaaa
     3961 atctggtata gatcctaaat ttaatgctag caaacttgga attaaaaacg ctgaatgttg
     4021 ggattaaaat tcataagcct tagtggctta tgaattaatg atttaaaacc ttgtttaaaa
     4081 attctctcaa tctttcattg ctaggatttt caaatacttc tttagggctt gcatcaacag
     4141 caatttttcc tttatccata aaaaatatac gattggcaac atttctagca aagcccattt
     4201 catgagttac tacaagcata gttaaacctt cttttgcaac atctttcata atgcttagaa
     4261 cctcgcctat catttcagga tctagagctg aagtaggttc atcaaataaa ataacatcag
     4321 gattcatcat caagcttcta gcaatagcta tgcgttgttt ttgtccgcca gaaagcttat
     4381 ggggcattat attttctttg tctgctaaac ccaccttagc aagaagtaat tttgcttttt
     4441 ttatggcttc ttcttgactt aaaattcctg ttttaatggg cgttaaacat aaattttcca
     4501 taacattttt attggcaaaa agattaaaat gctgaaatac catgctaact ttttgcctga
     4561 tcttattaat atcaatttct ttatcaagta tgttttgctt attgattaaa atttccccac
     4621 tatcagctag ttctaagcga ttgatgcagc gtaaaaatgt actttttccg cctccacttg
     4681 gacctatgat agctattaca tcgccttttg agattgtagt gttaatattt tttaaaactt
     4741 ctaattctcc atattttttt tgtaaatttt taacttcaat catttttatt catcctaagt
     4801 tcaagttttt ttgcaaaata gctaaaaatt tttacactta cataataaac aagtccagtg
     4861 aaaataatag gttttggatt gtaaagtacg gcttgcaagc tttgactttg catggtaata
     4921 tcaataacac taataaatcc tacaacagaa gtttccttaa ataaagaaat aaattcatta
     4981 gctaatgcag gtagaatgtt tttagtagcc tgtggaagaa taatttcttt cattgaagtt
     5041 ttgtaatcaa gtcccattgc tcttgcagct tccatttgtc ctattaatgc cacttcttac
     5101 aatttctgct atataagccg agctattaag tcctagtgca agaatggctg cataaaggtt
     5161 atctataaaa gtaaaaatta caaaagcaaa aatcatcaat tgtaaaatta ctggtgttcc
     5221 tcgtataatg tctatatatt catctataat aaaattaagc gttttaaatt tagagaagtg
     5281 taaaatagct aaactaaaac caataatcac tccgataata acagcgcaag cagttaataa
     5341 aagtgtaata agatagcttt ttaaataagc ttttgcattt tctgtatagc catagcttac
     5401 aactccacta ggatcttgaa tttttaatat ttctattggg aaagaaaaat agccccataa
     5461 aataataata acaaaaaaaa caaaaattct tatatttttc tgattcaatt tgtaaacctt
     5521 ttcagagaaa ttatttaaaa aaagatttta tagaaatatc tttgaatttt ctctaaagat
     5581 ttaaaaaaat gtgttagaat ttcccaaaaa taaggttgta tttatggaaa ttttagattt
     5641 cattctaata gttatttttg tgtttttaat gattgttttg gttataggtt tcaatcatca
     5701 aatgatgcaa aaaaacaaag aaagagaaga aagatttaaa aaatataaaa aaggagaaca
     5761 aaatgagtaa aaaagtatta attccattgg ctcaaggttt tgaagaagct gaatttatag
     5821 gaattgcgga tgttttaaaa cgagcaaaag agttaaatcc agatttggaa gttgttatag
     5881 cttcgttaaa cagtgagtta ttgataaaag gtgctaatag cattagtata aaagcagatt
     5941 gttctataga ggatgttgat atagaaaatt tagatgctat tgctttggcg ggtggctttg
     6001 aaggtatgat gaatcttaag aattcaaatg ttattttaaa tatcattaaa caacttcata
     6061 gcaaaaataa aattgttgcc gcaatctgtg cttctcctat agttttaaat gaagcaggtg
     6121 ttttagaggg cgagtttgct tgttatccta gttgtgaagt tggacttaat ggaaatcgtg
     6181 ttaacaaggc tgtagttgta aataaaaatg ttataacttc agcaggtcca gctacggcaa
     6241 ttctttttgg tttagaacta gctaaaaagt tatgcggtga tgaaatttat caaaaattat
     6301 atgagggaat gttgctacct ttgacaaaat agtttaaatg gtagtttttc taccatttaa
     6361 actaaaataa agcttgagga ttttcttttt ttgttttttc cttaggcagt tcaaaacctc
     6421 caagcatatg aaaatgcaaa tgaaaaactt cttgtccact attttttcca cagtttgtta
     6481 ccaagcgata tccactttta tctacaccta aaagaacagc taattcttgt atgaaacttg
     6541 tcattttggc cataagttca ggatcaaatt cttgaaagtc tttaaaatat tttttaggga
     6601 ttataagtat atgtatgggt gctttgggtg caatatcatg aaatgctaga aaatcgtcac
     6661 tttcaagcac tttattgcat ggaagtttac cttcaactat gagttcaaaa attgtttttt
     6721 cttgcattat ttatcctttt ttattgttgg tttgatacaa ttatatcttt aaagtttggt
     6781 ttttatgctg aatttaaaat agtttttaat agaattagaa tttgaaatat tttatttaag
     6841 gtaagaaaat tgcaaaattt tatagaacag attcaaaaat gtgagaattt aaatgatttg
     6901 gaagccatta ggatttccgt tcttggaaaa aaaggtattt taacagaagg ctttacaaag
     6961 cttaaagagt tagaagatga ggcgaaaaaa gaatttgctg ctaaattaaa tgcacaaaaa
     7021 gaaatattta atgaggctta tttagccaaa tttaaagatt tggaaaatct tgctttagaa
     7081 gaaagaatga aacaagatgc tttaaatttt aactattttg atgaaagtat tacaacaggt
     7141 gccttgcatc ctgttatgag caccatggat aaaatcatag aatattttat agctttgaat
     7201 tttagcatag aaaaagggcc tttaatagaa gatgactttc ataattttga agcgttaaat
     7261 ttacctaaat ctcaccccgc aagagatatg caagatacct tttattttga tgataaaagg
     7321 cttttaagaa cacaaacttc gccagtgcaa atacggacaa tgcttgcaca aaaacctcct
     7381 attaggatga tagcccctgg tgctgtattt agaagagatt ttgatattac gcatactcct
     7441 atgtttcatc aagttgaagg ccttgtggtg gaagaagggc aaaaggttag ctttgcaaat
     7501 ttaaaaagtg tattggaaga ttttttgcgt tatatgtttg gagatgtgaa agttcgtttt
     7561 cgtccaagtt ttttcccatt tacagaacct tctgctgaag ttgatatttc ttgtgtattt
     7621 tgcaaaggaa agggttgtag agtttgcaaa catacaggtt ggcttgaagt tttaggatgt
     7681 ggaatagttg atcctaatgt ttataatttt gttggttatg aaaatgtaag tggttatgct
     7741 tttggattgg gagtagaacg ttttgcaatg cttttgcatc aaattccaga tttaagatct
     7801 ttatttgaag gtgatttgag attattggag cagtttagat gataattact aaaagttggt
     7861 tgaatgattg gttagaactt gaagaaataa gttcagataa aatagctaaa actttaaact
     7921 ctataggtat agaagttgat agggttggcg ctttaaaggc tccagataaa gttgttgtag
     7981 gctatgttaa ggaaaaaatt aaacatgaaa attcagataa attaagcatt tgtcaagttg
     8041 atatcggaag tgaaaccttg caaattgtct gtggtgctgc gaatgttgat gcaggacaat
     8101 ttgtagctgt tgcaactaaa ggtgctatca tgccaaacgg tatggaaata aaagaagcaa
     8161 aattgcgagg agtggattct tgtggtatgc tttgttctag tttagaactg ggttttgaaa
     8221 aaatcaatga aggaattatg cttttagatg agagtatagg gaaattagaa cttgggagac
     8281 ctttaaatac ttatgaaatt tttaatgatg agctaataga agtggaactt actcctaata
     8341 ggggtgattg tttaagtatt tatggtatag ctcgtgattt agccgcagct ttaaatttaa
     8401 atttaaaaga accaaaacca tttaaagaaa gtgaaaatgt tttaggtatc ggtagaattt
     8461 tgcgcttagc agctgagaaa gaacttaatg gactttataa ttatcgagcc atagagctaa
     8521 aagaagaaat tcaaacaaat ttattgctta gtttaagact tgctcaaatt gaaagtttgg
     8581 gaaaaaattc catagaaaat ttattaaatt atgcaacgca ttcaactggt gttcttttta
     8641 atgcttatga tttaagtagt ttttctgaaa aagatgaaga atttaccatt aatttaagca
     8701 agcaagtgca tggagaaaca aaagtatctt gcaaagataa acttttaagc tttagcggaa
     8761 ttttccaaaa taatgaaagt agatgtaaag atgattctaa aataattatt attgaggcta
     8821 attataccga tccattggta attgcagatg ctaaaatata ttataaagat caagatgaaa
     8881 aaatgcttta tagaagtttt aggggaagtg aacctaaatt aaatttagga atggattttt
     8941 tgcttggtat ttttgagcag attccaaatc ttgttattta tagttcttct caacaaattt
     9001 taactgacaa agaattacca atcataccaa taagtattga aggtattagc gatataatag
     9061 gacaaaatgt tgataaagat gaagtattaa aaatattaaa gaaattaggt tttgagctca
     9121 tactttcagg tgaagggctt ataaatgtta aagcaccttt acatcgtcct gatattaaaa
     9181 atttatcaga tatttgcgag gaagttgtaa gaattatagg tattgataat attgcttcca
     9241 agggtttaga atttatagaa aaaaatcgtt taaattctgc atataaaaat tatattgagt
     9301 ttttaaattt aagaaaaaga gcagtagcta gtggttattt tgaaagctta cattatgttt
     9361 tggataatgg agaagaactt aaaagattag gttttgactc tgttaaatta aaactaatca
     9421 atccaattac agcagaactt aatactttaa gaacaaccct tttaaatcat ttgttaaatg
     9481 cagcaagttt aaatgcaaaa aattctaaaa aaattattaa actttttgaa ttaggggctg
     9541 ttttcaatgt taataatcaa gaattaaatc gtattgcatt tatccattct ggcttaaaag
     9601 aagaagctaa aatttccaac aaggccaaac ctgaatcggt gcaattttat gattttcttt
     9661 tagatattaa aaatattata ggtgatttta aactaaaatc atcaaaatat aatattttaa
     9721 gcccttatga acaagcagat atttatctat cggatattaa agtaggtttt ataggccgtt
     9781 tgcatttaaa aatagaaaat gagagagatt taccaaaaac atatgtttgc gaacttgatt
     9841 tagatttaat caggcaagat tttaaaatag ctaagcctta ctccaaattc ccagctatca
     9901 ctagagatct tagcgtgtta atacctaaag gttttgaata caatcagatt aaaaattgta
     9961 tcgaagaatt gaatttagaa atacttgaaa attttcgttt agttgatatt tatagtgatg
    10021 aaaaccttaa agaattttat agcattacta taagtttttc ttttagggat ataaataaaa
    10081 ctctagaaga taatcaagtg aatgaatgta tggataaaat tttaaatact cttaaaaatt
    10141 tgggtcttga tttaagatga aaatttacaa attgcaaacc cctgtaaatg ctatacttga
    10201 aaatatagca gcagataaaa gcatatctca tcgttttgct atattttcgc ttttaacaca
    10261 agaagaaaat aaggctcaaa attatctctt agctcaagat actttaaaca ctcttgaaat
    10321 tataaaaaat cttggagcta aaattgaaca aaaagattct tgcgtcaaaa ttataccccc
    10381 taaagaaatt ttatctccaa attgtatttt agactgtgga aattcaggaa ctgctatgcg
    10441 tttgatgata ggatttttag caggaatttc tggttttttt gttttaagtg gagataagta
    10501 tttaaacaat cgtcctatga gaaggataag caaaccactt actcaaatag gcgctagaat
    10561 ttatggaaga aatgaggcaa atttagctcc actttgtata gaaggtcaaa aattaaaagc
    10621 ttttaatttt aaaagcgaaa tttcttcggc tcaagttaaa acagctatga ttttatctgc
    10681 ttttagagct gataatgtat gcacttttag tgaaatttct cttagtcgaa atcatagtga
    10741 aaacatgcta aaggctatga aagctccaat aagggttagt aatgatggct taagtcttga
    10801 aataaatcct ttaaaaaaac ctttaaaagc tcaaaatata atcattccta atgatccttc
    10861 ttcggctttt tattttgttt tagcagctat tattttacct aaatctcaaa ttattttaaa
    10921 aaatattttg cttaatccta ctcgtataga ggcgtataaa attttgcaaa aaatgggtgc
    10981 caaacttgaa atgacaataa ctcaaaatga ttttgaaact attggtgaga tcagggtgga
    11041 gtctagcaag cttaatggca tagaagttaa agataatatc gcttggttaa tagatgaagc
    11101 gcctgctttg gctatagctt ttgctttggc taagggtaaa tctagtttaa taaatgctaa
    11161 agaattacgc gttaaagaaa gcgataggat tgctgtgatg gttgaaaatc taaagctttg
    11221 tggtgttgaa gctagagaac ttgatgatgg ttttgaaata gaaggtggat gcgaactaaa
    11281 atcttcaaaa attaaaagct atggagatca ccgtattgct atgagttttg ctattttagg
    11341 tttgctttgt ggaatcgaga ttgatgatag tgattgtata aaaacttctt ttccaaattt
    11401 tatagagatt ttatcaaatt taggagctag gattgattat tgaattagca aaaaactatg
    11461 gtttttgttt tggtgttaaa agagctatta aaaaagcaga acaaataaaa gatgctgcaa
    11521 ctataggccc tcttattcac aataacgaag aaatttctcg tttgcaaaaa aattttaatg
    11581 tcaaaacttt ggaaaatata caagctttaa gtaatgaaaa aaaggctatt ataagaactc
    11641 atggtattac aaagcaagat ttagaagaat tgagaaaaaa agatatagaa atttttgatg
    11701 ccacttgtcc ttttgttaca aaaccacaac aaatttgcga gcaaatgagt aaggagggtt
    11761 atgaagttgt tatttttgga gatgaaaatc atcccgaagt taaaggagtc aaaagttatg
    11821 taagtacaaa agcttatgta gttttggata aaaaagaact tcaaaatata aaacttccta
    11881 ataaaatagc tgtagtaagc caaacaacta agaagcctga gcattttatg gagatagtaa
    11941 attttttaat acttaaaacc aaagaagtaa gagtttttaa cactatatgt gatgcaacct
    12001 ttaaaaatca agatgccatt aaagaactct cgcttaaaag tgatgttatg gttgttgtag
    12061 ggggtaaaaa ctcagccaat acaaaacaac tttttttaat tgcaaaaacc aattgtgaag
    12121 atagctatct aattgaaacc gaagaagagt taaaaaaaga atggtttttg gataaaaaac
    12181 attgcggcat tagtgcaggt gctagtactc ctgattggat catacaaaaa gttatcgcca
    12241 aaataaaaaa atttaaaatt aattaaaaaa tgttttcaaa tagaataaaa aagtcaaaaa
    12301 tttaaaaaaa attaacaaaa ataaaaaaac ttaacactaa ttaaagaaaa ataaggtaaa
    12361 atcaatcaat ttctaaaaat tattttaaag gaccataatg agcgaggtga acaaaaaagt
    12421 tcaaggcggc gtagatgatt atcttgagga agaagatttt ggacagcttt tagaagcttt
    12481 tgataaatca agagaagagg ctacaacaga gggtgtgatt gtagagatca aaaatgatga
    12541 agtttatgta gatataggta aaaaatctga aggtatttta gctcttagcg aaatacaaga
    12601 tgacaattct aagctattat ttaatgtagg cgatggtatt aaagttgctg ttatgggttc
    12661 tcgtggtggc agatctttac tttctcataa aaaagctttg agaaaagaaa aagttatcga
    12721 atttattaaa aactatcaag aaaatcaaga tgatattttt accgtaaaag tagttggaaa
    12781 aaataaaggc ggattgatag ttgttgatga aaatgatgtt gaatttttct taccaaaatc
    12841 tcaatatggc ttcaaagaaa caaataatat tataggcaaa acgtttaaag ttaaaattat
    12901 taaaatcgac aaagatgagc aaagtatcat tgtttctcgt aaaaaaactt tagatgacga
    12961 gagaagaaaa cgcaaagaat tgatcaataa tgtagcacaa caagaagatt taattgaagg
    13021 tattgtgaaa aaaattacta cttatggtat gtttgtggat gtaggaggtg ttgatggtct
    13081 tgttcattac agcgaaattt cttacaaagg acctgtaaat cctggaacac tttataaaga
    13141 gggtgataag gttccagtta aagttataaa gtatgataaa gaacgcaaac atttatcctt
    13201 gtctataaaa gcggctttac ccgatccatg gagcgagata aaagatactc ttgatgtagg
    13261 tgataccatt aaagtaatag tatcaaatat agagccttat ggtgcttttg tggatttagg
    13321 aaatgatata gaaggatttt tacatatcag tgaaatttct tgggataaaa atattaaaaa
    13381 tccaaaagat tatatcaaca aaggtcaaga aattaatgtt gaagtaattg aaatcaatcc
    13441 aaatgaaaga cgcttaagag tttctttaag aaatttactt tctagacctt ttgatgaatt
    13501 tatgaaatct tacaaaattg cggatgtggt tgaaggagaa attacctcgg taacttcttt
    13561 tggtgcgttt gttaaacttg gcggtattga aggtctattg cataatgaag atgcttcttg
    13621 ggatagaaac gataaatgta aagacaaatt ctctcaaggg gataaaatca aggtaaaaat
    13681 tatcaaaata gatgaagaaa accaaaaaat atcattaagc acaaaagaat taaacagttc
    13741 tccagtgcaa gaatatgcca aaattcataa agtcggcgat attgtaaaag gcactatccg
    13801 tgatattaaa gattttggtg tttttgtaga gctaagtaaa aatgttgatg ctttaattca
    13861 taaagaagat ataagcactt ctatgcttga aaatttaaaa attggcgacg atattgaagc
    13921 tgctatagtt tttattgatg aaaagaaaaa tagaattcgc ctaagtgtca aaaatcttgt
    13981 tagaatgaaa gaaagagaag ttcttaatga aatcaataat gatgataaag taactttagg
    14041 tgatatcatt aaagatcagc tagcttaatg aaaaaataca ttacaataag cattttgagt
    14101 attttattac tcattttgct tgctgttgtt tttacattgc tttggcaatt taaagctaat
    14161 gtaaatttca ttccacaatt tgctaaagat acaaatacgc agccaagcat tcaaacccaa
    14221 aatcaagatc tttcatggca agaagaatta gcaaaatggc ctacaagaga ttttacccca
    14281 gcagcagaaa aatttacctt atattttgat gcggatacta gcgagcttaa ggagaaaaat
    14341 aaatattatc aacttatagt tggaaaatat gatatttatt ctatgttttg cttaagacag
    14401 actttaaatt cttttaatgt gaagtatttt cttcttaaat ctggcgatag tccagaaatc
    14461 tttttggata caggcaatga aaaacttata gatgatatta tcaaagaatt aaaaaaatat
    14521 aaaataaata cagaagtaaa ggaaatttgg ttatgaaaaa aaagattata gtgtgtgatg
    14581 ctattttgga taaaggtgtc gatattctaa gaaaagctga agatattgag cttatagaag
    14641 ctgcaaaatt tccaaaagat gaacttatgc aaatgctaag cgatattgaa gttgcaatta
    14701 ctagaagttc tacggatgta gatgtaaatt ttttaaatca tgccaaaaaa ttaaaagcgc
    14761 ttgtgcgtgc tggggtgggc gtagataatg ttgatattcc agagtgttct aaacgaggag
    14821 tgattgtgat gaatgtccca actgcaaata ctattgccgc agttgaacta acaatggcac
    14881 atcttttaac atcagctaga agctttgtca atgctcataa ttttttaaaa attgaaagaa
    14941 aatgggaaag agaaaaatgg tatggcattg aattgatgaa taaaacgcta ggggttatag
    15001 gttttggaaa tataggttca agagtagcta tccgtgctaa agcatttggt atgaaaattt
    15061 tagcctatga tccgtatatt tctgcttcta agattacaga tttagatatg gaacaagcaa
    15121 aaaatttgga tgaaatttta gaaaaaagtg attttattac cattcacaca ccaaaaacca
    15181 aagaaaccaa tggtatgata ggaaagcaag aaattgcaaa aatgaaagat ggaataagat
    15241 taataaattg tgctcgcgga ggattataca cagaagaggc tttatatgaa ggtttaaaaa
    15301 atggtaaaat agcatggctt ggtatagatg tgttcgataa agaacccgca accaatcatc
    15361 ctcttttaga ctttgaaaat atttcagtta cttctcacct aggagcaaat actttagaaa
    15421 gtcaagacaa tatcgcaaga gaagcttgtg agcaagcatt aagtgcagca cgaggcgtgg
    15481 cttatcctaa tgccttaaat ttaccaatta aaactgaaga cttaccacct tttgtagctc
    15541 cttatataga acttgtttct aaaatggctt ttttagctgt tcaaattgat aaaaatccta
    15601 taaaaagtat taaattagag gctgaaggaa ttattggtga gtatgcaaat tctatgctaa
    15661 cttttgcagc tgttggtgct ttgggtggaa ttttaggaga gaaaattaat tatgttaatg
    15721 cagaatttgt tgccaaagaa aaaggagttg aattatcttg cgaaactctt ccaaatagtg
    15781 gttataataa taaacttagc gttaaaatta tcaccgaaaa ttcaaatatc agtgtttcag
    15841 gaacagtgtt taatgaaaat gaacaacgca tagttggatt aaatggcttt aaaactgatt
    15901 ttaagccaaa gggaaaaatg attattttta aaaacaaaga cataccagga gttatagcta
    15961 aaatcagttc cgttttggca gctaaaaata tcaacatagc tgattttagg cttggtagag
    16021 atggttttgg gtatgctttg gctgttgttt tgattgatga aaaagttcaa aaagaagtat
    16081 tagatgaact aaaacaatta gaggcgtgtg tatttgtcca atatgttgaa atttaaaatt
    16141 ttaattatag aagatgatat agatttaaac gaactgcttg ttttaaagtt aaaatctagt
    16201 ggttatgaag ttatatcttt agcggatttt tttggagttg aagatttgct cgataatgag
    16261 caaattgatc ttttaatagt cgatagaaat ttgcccagtg gagattcttt agaaaaaatt
    16321 caagatttaa gagagcaagg atataaagaa gcagttattt ttcttacagc caaggcttta
    16381 catcaagatt tactcgaagg ctttgaaagt ggttgtgatg attatgtttg taaacctttt
    16441 gatttcaatg agcttttgct tcgcattaaa gcaattttaa aacgccataa aaaagaagaa
    16501 gaaaaactat cttttggtga ttttatttta gatttggtta gttatgaatt cttttacaaa
    16561 aatcaaaaat tagaaatctc aaatcttgac tatgagcttt taaaatgttt ttttgaaaat
    16621 ccaaatacct tgcttactag acaattttta agcgaaagtg tttggaaaga tgatactaca
    16681 agtgataaaa caatcaatat agctctaaca agacttagaa ataaatttcc aaaactaaaa
    16741 gatcatatta taagtgttag gggtattggc tataaattat gctaaaaact aaaaatattt
    16801 ttatagtttt ttttgttgta ttggctttga tttttgggtt tattttttat acttttacta
    16861 attcttatct taatttcttg cttataaaac aatatgaaca aaaaatcaaa agccttgatg
    16921 atgttttaaa attttctctc ttagagcatt taaatgatgc
//
LOCUS       DARGEM010000022        16706 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.022, whole genome shotgun sequence.
ACCESSION   DARGEM010000022 DARGEM010000000
VERSION     DARGEM010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.022"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..391)
                     /locus_tag="SFZ78_000585"
     CDS             complement(<1..391)
                     /locus_tag="SFZ78_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8211482.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGIN"
     gene            522..656
                     /gene="rpmH"
                     /locus_tag="SFZ78_000586"
     CDS             522..656
                     /gene="rpmH"
                     /locus_tag="SFZ78_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG8211483.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            653..979
                     /gene="rnpA"
                     /locus_tag="SFZ78_000587"
     CDS             653..979
                     /gene="rnpA"
                     /locus_tag="SFZ78_000587"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG8211484.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            976..1317
                     /gene="yidD"
                     /locus_tag="SFZ78_000588"
     CDS             976..1317
                     /gene="yidD"
                     /locus_tag="SFZ78_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG8211485.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAKKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            1314..2906
                     /gene="yidC"
                     /locus_tag="SFZ78_000589"
     CDS             1314..2906
                     /gene="yidC"
                     /locus_tag="SFZ78_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG8211486.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTSNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            2903..3721
                     /locus_tag="SFZ78_000590"
     CDS             2903..3721
                     /locus_tag="SFZ78_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG8211487.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAKFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            3714..5042
                     /gene="mnmE"
                     /locus_tag="SFZ78_000591"
     CDS             3714..5042
                     /gene="mnmE"
                     /locus_tag="SFZ78_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG8211488.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            5053..7239
                     /gene="purL"
                     /locus_tag="SFZ78_000592"
     CDS             5053..7239
                     /gene="purL"
                     /locus_tag="SFZ78_000592"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG8211489.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGKSLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKIFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            7236..8006
                     /locus_tag="SFZ78_000593"
     CDS             7236..8006
                     /locus_tag="SFZ78_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG8211490.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSAARGAKGFAKGFVRGV
                     MEERMDEFKRRMNYYVIVLLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELSNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            8009..9541
                     /gene="purH"
                     /locus_tag="SFZ78_000594"
     CDS             8009..9541
                     /gene="purH"
                     /locus_tag="SFZ78_000594"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG8211491.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAMF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDEFKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKVAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            9636..10097
                     /locus_tag="SFZ78_000595"
     CDS             9636..10097
                     /locus_tag="SFZ78_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211492.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            10554..11087
                     /locus_tag="SFZ78_000596"
     CDS             10554..11087
                     /locus_tag="SFZ78_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8211493.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            11103..11222
                     /locus_tag="SFZ78_000597"
     CDS             11103..11222
                     /locus_tag="SFZ78_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG8211494.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            11238..11672
                     /locus_tag="SFZ78_000598"
     CDS             11238..11672
                     /locus_tag="SFZ78_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG8211495.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            11771..12748
                     /locus_tag="SFZ78_000599"
     CDS             11771..12748
                     /locus_tag="SFZ78_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG8211496.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKKVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPNPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            12745..13632
                     /locus_tag="SFZ78_000600"
     CDS             12745..13632
                     /locus_tag="SFZ78_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG8211497.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            13629..14501
                     /locus_tag="SFZ78_000601"
     CDS             13629..14501
                     /locus_tag="SFZ78_000601"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG8211498.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEVSKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGIEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(14513..15859)
                     /locus_tag="SFZ78_000602"
     CDS             complement(14513..15859)
                     /locus_tag="SFZ78_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8211499.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENKHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGSPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            15908..>16706
                     /gene="pif1"
                     /locus_tag="SFZ78_000603"
     CDS             15908..>16706
                     /gene="pif1"
                     /locus_tag="SFZ78_000603"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8211500.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELD"
BASE COUNT         6042 a         2046 c         3044 g         5574 t
ORIGIN      
        1 aattaatacc taaaatatta tcatttaagc aaacccagtc gagtcttttt aaattttctt
       61 ttttgcaaat ttctcctaaa aatttaaaca cagcttttcc ataacctttt ttacgaaaat
      121 tttctcgtat ataaatatct tcaagataaa ttccaccgct gccccaaaaa gacgaaaaag
      181 tataaaaata aatcatatag cctatagttt tttcattttc ttttaacaaa aaagcacgag
      241 caaatttatt ttttagtaaa gaatgttcca gtttttcttt cgtgcattga agaaaatcta
      301 acatatcttc gtattttgca aattctatga tcatttcttg taaaatatct aaatcttctt
      361 gtcttaaatc aataatttta aattctgaca tttttaacct tttaaaaata atttcaaaat
      421 ttatcaaaag aatttaaaaa ttactcttaa tcaaaagcaa tttataagta agattaagat
      481 aaaatacaag tttattttat aattttttaa ggaaaaatca aatgaaaaga acttatcagc
      541 cacatggcac tccaagaaaa cgtactcatg gttttcgtgt tcgtatgaaa actaaaaatg
      601 gtcgcaaggt gatcaatgca agacgcgcta aaggtagaaa aagacttgct gtgtgaaaaa
      661 ttttgataaa tttagcacaa acgaggaatt ttcatctgta tacaaaatag gtaaaaaatg
      721 gcattgcgaa ggtgtgatta ttttttatct gaatagttat gaaaaaaaaa tagcagttgt
      781 tgctagtaaa aaagttggaa aagcagtggt tagaaatcgt tcaaaacgaa ttttaagggc
      841 tttgtttgct aagtttgaaa gatatcttca agatggcaaa tatatttttg tagctaaaaa
      901 tgaaatcact gaactttctt tttctaggtt agaaaaaaat ctaaaatggg gattgaaaaa
      961 actagaatgt ttcaaatgat atgcctaaaa atactccgtt tttatcagaa attcttaagc
     1021 cctttaaaac ccgctgcttg taggtattat cctagttgtt ctgagtatgc gctttggcag
     1081 tttcaaaaaa agaatttttt tctagctttt ttttctactt tttttagagt tttaagatgc
     1141 aacccttttt ttaaaggggg ttttgattat cctagagttt ctaaaaattt ttatcctata
     1201 aatttatgtt ttaagcctat atttttagca aaaaaacaac tttgtttttt atatatacct
     1261 tataaaaata aaagttttta tcttataaaa atcatcttta aaaggacaaa tcagtgaata
     1321 attcaaataa tatttttcag caaaagcgta tacttttagc tgttgtgatc tcttttttat
     1381 tttttgttgt ttacgattat tttttcattc caaaacaacc tttaaaaata gaacaaaaca
     1441 ttacacaaca aaatcaacaa aacacaagca taaataacac ttctaatata caaaatacca
     1501 ccacaaatac tccaagtgca gctttagttt cacaagatag tgtgatatct aaggttcaaa
     1561 gcaagcattt tgaagcacaa attgactctt ttggtagaat ttctgctttt tatttaaaag
     1621 ataaaaaata ccaaaatgag aaaggagaat ttataaatct tgttagcaag gaaaatagtc
     1681 cttatccttt agaaatgcgt tttagtgatc caagtattaa ctcagaggct tttaaaattc
     1741 cttatgttgc taacgctagc aatctttttg ttgatgaaaa tggaagtcaa gttttaaaac
     1801 tcactcaaaa tctttctgga ttgaaaatcg aaaaagatat tactttttat ccaaaaggaa
     1861 attatgagat agaagttaaa ctcagcaaga atgcaaatta ttttataagt ccaggatatc
     1921 gtccaaatat tgccgtagat agttatacag ttcatggtgc tttggtaatg gataataaag
     1981 aaaccatcga aacttataaa gatggagatg tagaaaagga tgaaagtgct aataatgtcg
     2041 taatgacttc ggcttttgat agatactatg caactttctt ttataatttt gataaacctt
     2101 taaatgtggc aatcagcaag gatgctaatc aaaaccctat agtttttgct tatagtgata
     2161 atgaatttaa agcagggggc tatataggct ctaaagaaca tgtgatttta agaagtatag
     2221 atccacgcct tgaagcagtt gttgaatatg gttggtttac ttttattgct aagcctatgt
     2281 ttgagttttt gaatttcttg catcagtata taggaaattg gggttgggct atcgttgtga
     2341 tgactttaat tgtgcgtatt attttattcc cgctaactta taagtctatg atttctatga
     2401 ataaacttaa agatcttgct cctaaaatga aagatattag agagcgttat aaaggcgatc
     2461 cacaaaaaat gaatatgcac atgatggagc tttataaaaa acatggtgca aatcctatga
     2521 gtggttgttt gcctatactt ttacaaattc ctattttctt tgctatttat cgcgttttgc
     2581 ttaatgctat tgaactaaaa gcagctcctt gggcgttttg gatacatgat ttatcggtaa
     2641 tggatcctta tttcattttg cctattttaa tgggtgcaac gatgttttta caacaactta
     2701 ttacacctat gactatacaa gatcctatgc aagctaagat tatgaaattt ttaccagtga
     2761 tttttacttt tttctttatc actttcccag caggacttac gctttattgg tttgtaaata
     2821 acctttgttc tttggttcaa caatgggtta tcaataaaat atttgctaaa gaacatcaca
     2881 aaaaacaagc ggagcatgaa aaatgaaaat cgaagccatt gatcttcaaa gtgccttaac
     2941 agaagcttca agaagtttag aatgttccgt gatggactta gaatatgaga ttattcagca
     3001 tccaagaaaa ggtttttttg gatttggaag aaaaaaggca attatagagg ctaaagcaaa
     3061 aaaaaggatt ttgaaaaaaa atcctaaaaa agaatttaca agttcaaaaa atcacaaacc
     3121 agaaacacat gagccaaaac aagaaaacaa gattgaaaca aaaaatgaaa aaaataaaag
     3181 ccaaaaagaa aaatatacag taaaaagtga tgaaattttt gatagttttc atcgagaaag
     3241 caaaggagtg cgtaatactc aggatatttt agatgagatt cgcattcagc ttgtaaaact
     3301 tttagaaagc tcccagttta aaatagagct tagtgaactt agaatgtatg atgaagattg
     3361 cgttttgatt cgattggatg gagaagatgc tgctttgatg ataggtaaag aagcacatcg
     3421 ttacaaggct atttcttatc ttttacataa ttggatcaat ttaaaatata atcttttagt
     3481 gcgccttgag atcgctcaat ttttagaaaa tcaaattcaa ggtatgcagc tttatttaca
     3541 aaacgtgatt gaaaaaatta aaattcatgg acgcggacaa accaaacctt tggatggggt
     3601 tttgataaaa atcgctttag agcagttaag agctaaattt ccagataagt atgtaggaat
     3661 taagcaaaat aatgatcaaa gatttgttgt aataaacgac tttttcaaaa aagatgagtg
     3721 atactatagc ggctattgcc acagctcatg gtgtgggttc gatttctatt gtaagattaa
     3781 gcggtgaaag ggctttagaa tttgccttaa agcttagcca caaaaccaaa cttaccccac
     3841 gccatgctac ttttacaaaa ctttttaatc aaaataatga aattatcgat gaagctataa
     3901 tgatatattt taaagcccct tatagtttta caggggaaga tatagtagag tttcaaactc
     3961 atggaggatt tagtgtgagt gaagttttac tcgaagaact tgtgagttta ggagcaagac
     4021 ttgctttagc aggggaattt agcaaaagag cgtgtttaaa tggcaaaatg actcctttaa
     4081 aagctttaaa tatacaagat ctcatacttt caaaatctgc acttgcagct aaaattatag
     4141 cacgtaacat gcaaggaaac ttaggagaac ttttagaaaa aattcgcaca gatttggtta
     4201 aaactttagc ttttgtagaa actagtattg attatgctga tgatgattta ccttctgatt
     4261 tattagaaca aatttctact atgtgtgaag aaaattctaa aattttaaaa gaaatttata
     4321 cgctttctca aagcaaaaaa ggactcatag aaggttttaa aatcgctatt gtaggtaagc
     4381 caaatgtagg caaatcttcg cttttaaatg ccttgctttc ttatgaaaga gctattgttt
     4441 cagatatagc aggcaccact cgtgatacta tagaagagag ctttaaatta ggaacgcatt
     4501 tattacgcat tatagataca gcgggtatta gggaaagtaa agatgttata gaacaaatcg
     4561 gcgtagcttt aagtaaaaaa agtttagaag atgcagatat tattttggca gtctttgatg
     4621 cttcaagagt gcaagataaa gaagatgaga aaatttttga cttattagca aatactgata
     4681 aaaaaatctt ttggatttta aataaaagtg atttagaaaa tgttttcaaa aatactcaaa
     4741 ataaaaattt tatcaagctt agtgctcaaa aagacatcac tttattaaaa gaagaattgc
     4801 aaaattattt taattctttt gatagcgaag gtattatggt aagttcttta gatcttatta
     4861 atgcttgtaa aatttcaagt gaagcgattt ttagagctaa agggctttta gaggaaagtt
     4921 ctttagaact ttttgctttt gagcttaatt tagcgattaa tgaacttgca agatttacca
     4981 aagattttca aagagatgaa attttagacg aaatgtttgg taatttttgt ttaggaaaat
     5041 gaaaggataa aaatggacaa agaaaccata aaagcacata aaatcagtga tgaagaatat
     5101 gcacaaattt tagaaatttt aggacgcgag ccaaatttat tagaacttgg ggttatttct
     5161 gcgatgtgga gcgagcattg ctcttataaa tccagtaaaa aatatcttaa tggttttcca
     5221 actaaagcac cttgggtgat tcaaggccca ggagaaaacg caggggttat tgatattggg
     5281 caaggtatgg cagcagtttt taaggtagaa agtcacaatc atcctagctt tatcgagcct
     5341 tttgcaggtg cggctacggg agtaggggga attttgcgtg atgtttttac tatgggtgca
     5401 agagtggttg cagggctaaa ttctttaaaa tttggcaata ttcatgatga aaaatgcggc
     5461 aaacatcaaa aataccttgt taaaggtgtg gtaaatggaa tttctcatta tggaaattgc
     5521 atgggtgtgc caactatagg tggagaatgt gcttttgatg agtgttttaa tggaaatatc
     5581 ttagttaatg cctttgcttt aggggtttgt aaaagtgaag atatctttta tgctaaggct
     5641 gaaggtgtag gaaatcctgt gatttatgtg ggttcaaaaa cagggcgtga tggacttggt
     5701 ggagcggtta tggcaagtga tagcttcaat gaagaaagca aatctttgcg tcctacagtg
     5761 caaattggcg atcctttcag tgaaaaactt cttatggaag cttgtttaga gctttttaaa
     5821 actgattata ttgtgggtat tcaagatatg ggtgctgcag ggcttacttc aagttctttt
     5881 gaaatggcag gaagaagtgg cagtggcatg aaactttact tagataaaac tcctatacgt
     5941 gaaagcggta tgactcctta tgagttaatg cttagcgagt ctcaagaaag aatgcttatt
     6001 tgtgcgaaaa aaggctatga agataaggtt atagaaattt tcaaaaaatg ggatttagat
     6061 gctgtggtta taggtgaagt taccaataca ggaaaaatgg agcttttttg gcatgatgag
     6121 cttgtagggc ttattcctat cgagcctcta agtgaaaaag cgccgatttt aagtcgtcct
     6181 ataagtgagc caaaatattt aagtgaaatt aaagattata aatttgagct aaaattaagc
     6241 attcaagagc tttttataca aatgcttcaa aatgaaaata ttaacaacaa agcttttatt
     6301 tatgatcaat ttgattcaag tgtgcaaacc aatactataa aagctgatgg aagattaggt
     6361 gctagtgtta ttcgtatcaa agaaaatggt gcaagtgtgg ctatggctat agaatgtaac
     6421 tcacgcttaa attatgtaaa tcctaaaata ggagcagctt tagcagtagc ttcagcagga
     6481 agaaaagttg cttgcacggg ggctaagcct ttggcaataa gtgattgttt aaattatgga
     6541 aatccgcaaa atcctgaagt gatgtggcaa tttgcgcaag gttgcgaagg cattaaagaa
     6601 gcttgtaaag agttaaatac cccagtagta agcggcaatg tttcacttta taatgaaact
     6661 gaaggcgtaa gtatttatcc aagtcctact atagtaagcg taggggtttt agaagatgca
     6721 aataaaacct taaaagctag ttttgaaaaa gaaaatttaa gtgtttatct tttgggtaaa
     6781 agtttagggg aatttggcgg atctatggta atgaaaatcc aagataaaaa agtatcagga
     6841 agtcttaaag agcttgatta taaagctgaa attgcacttt gggatttgct ttataaagcc
     6901 aatcaaaatt ctttacttga gtgtgccaat agcgtaggaa tagggggtat tgctatgact
     6961 ttggcaaaaa tatttgctat ttctagtgtg ggtgtaaatt taacaagtgg ttttgatgat
     7021 gaaaaaatga tttttgatga gagtgcaagt cgtgctatag tagggcttag caaagaaaat
     7081 gaagaagctt ttttaaattt agccaaagaa tttggagtaa aagcttataa attaggtgtg
     7141 agtacaagcc aaaaacattt taaacttgat aacattgagt taagcaaggc tgaacttgac
     7201 aagctttatt ttgaaagttt taaagagcaa atccaatgac tttagtttta attatactcg
     7261 ttattttggt gttttactgg tattataaaa cttggggaaa acaggatttt ttaaactcag
     7321 ctgcaagagg agccaaaggc tttgctaagg gttttgttcg tggggttatg gaagaaagaa
     7381 tggatgagtt taaaaggcgt atgaattact atgttatcgt acttttggca aaaattgcaa
     7441 aaagtgatgg tagggtaagt gaaaatgaag ctgaaatgat caaagatctt ttagatgcaa
     7501 atgctaaaga tgaaaaagaa agagcttttt taaaagcaag ttttaatgaa cataaagaaa
     7561 atttaagtga tgctttttat gtggcaaaag attttttaaa agaagtgcct ttgcctaaaa
     7621 atgagcgttt taatgtcttg cgtgtgcttg tttttatggc tttaatcgat gcagatttta
     7681 atgctaaaaa gcgtgaaatt ttagagcaaa tcgctaaagc ctttgatata gcaaaaagcg
     7741 aattagacgc ttttatagca agtctttcaa atttaaaaag tactaaaaaa gaattaagcc
     7801 ttgatgaagc ttttgctatt ttagaacttt caaataatgc ggatttaaat gcggtaaaaa
     7861 aacaataccg caatttagca aaaaaatatc atcctgatat tttaaatgca aacaatgtta
     7921 gtgaagaaga gcttaaaatc ggtgtagaga aatttcaaaa aatcaacgaa gcttacgaaa
     7981 aagttaaaaa acatttagaa aggtaaaaat gagagcatta cttagtgtga gtgataaaga
     8041 aggcatagta gaatttggca aagagcttga aaatttagac tttgagattc tttcaacagg
     8101 cgggactttt aagcttttaa aagaaaatgg aataaaagtt atagaagtga gtgattttac
     8161 aaagagtcct gagctttttg aagggcgtgt gaagactttg catcctaaga ttcacggtgg
     8221 gattttacac aaaagaagcg atgaaaatca tatcaaacaa gcaaaagaaa atgaaatttt
     8281 aggcattgat ctagtttgtg tgaatttata tccttttaaa aaaaccacca tcatgagcga
     8341 tgattttgat gaaattatag aaaatatcga cataggtggg cctgcgatga taagaagtgc
     8401 agcaaagaac tataaagatg tgatggtact ttgcgatccg cttgattatg aaaaagtgat
     8461 tgagacttta aaaaaaggtc aaaatgatga gaattttcgt ttaaatttga tgataaaagc
     8521 ttatgagcat acggcaaatt atgatgctta tattgcaaat tatatgaatg aacgctttaa
     8581 cggaggtttt ggagcgagta aatttatagt agggcaaaaa gtatttgata caaaatatgg
     8641 agaaaatcca catcaaaaag gggctttata tgagtttgat gcctttttta gtgcaaattt
     8701 taaagctctt aaaggcgaag caagttttaa taatctaacc gatattaatg cagctttaaa
     8761 cttagctagt agctttgata aagctccggc tattgctata gtaaaacatg gaaatccttg
     8821 cggttttgct ataaaagaaa atttagtaca aagctatata catgctttaa aatgcgatag
     8881 cgttagtgct tatggaggag tggttgcaat caatggaact cttgatgagg ctttagcaaa
     8941 taaaatcaat gaaatttatg tagaagtaat catcgcagcc aatgtagatg aaaaagcttt
     9001 agctatgttt gaaggtaaaa aacgcattaa aattttcact caagaaagtc catttttaat
     9061 ccgcagtttt gataaatatg attttaaaca tattgatggg ggttttgtat atcaaaacag
     9121 cgatgaagtt ggcgaagatg agtttaaaaa tgcaaagctt atgagtcaaa gagaggcaag
     9181 taaggaagaa ttaaaagatc ttgaaatcgc catgaaaata gcagcattta ccaaatcaaa
     9241 caatgttgtt tatgtaaaaa atggcgctat ggtggctata ggcatgggta tgacaagcag
     9301 aatcgatgca gcaaaggtag caatcgctaa agctaaagaa atggggcttg atttgcaagg
     9361 ttgcgtttta gcaagtgaag ccttttttcc ttttagagat agcatagatg aagcaagtaa
     9421 agtaggggtt aaagctatag tagaaccagg cggaagtata agggatgatg aagtggtaaa
     9481 agcagctgat gagtatggta tggcgcttta tttcacagga gtaagacatt tcttacatta
     9541 agtttaatag aatgttatgt tttttacaca taatttaata aaaattaaat tatgtgtaaa
     9601 atatttccga aaaattttat ttttagaaaa ctatgatgtt taaaactata ggatttaagg
     9661 tttctgctgc aatttttgtg gtgttgctta taagtttcat tgtaatgcaa gtgattttaa
     9721 atttggattt taaaaatact gccaataaaa tgagcagggc aaatttaaat accgtaagta
     9781 cttctgtttt tcaaacaatg agaatggcta tgaatttagg agatcctgaa aaaattaaag
     9841 aagccattga agatgtaaaa agtatagagg gtattagtga tattaaaatt tatccttcaa
     9901 aagatactat agatcttttt gagatgaaag cccctcaaat ttcaaatgat aagcgtatta
     9961 tagaacaatt ttcaaatcct aaaattcaag ctttggaaga aaatataaat ggtgttgtgt
    10021 atttaagatt gatacgccct ttgattgcag atgaaagttg tgttacttgt catgaaatgc
    10081 taatgcagga agtgtgattg gggttatgga tatatcacat tctttagaag gtgtttaaaa
    10141 agatataagc aaaaccggtc aatcttatat tataatattt actattgctt tgatttttac
    10201 cctttgtggt ggttctttta atgcttaaag ttgttgttag aaagcccgtt ttagagcttt
    10261 taaatcatgc taaagaatta gctcaaggaa gcggcaattt taaaagctcg tatttcagtt
    10321 aaaggtcaag atgaaattgc tttagcttgt ggatatatca atcaatttat cgaaaaaact
    10381 cacaaggcag ttagcagtgc aagtcataat ttaaaaaatg tagaaaaaca aagcaatctt
    10441 ttaaattcaa atgctatttt ttaagtgata tcagttcaca aagtcataag caaatagatc
    10501 aaagttttaa acttggtgca aatgttggca atgaacttag agaacttgct agtttgtcaa
    10561 ataaggcaaa tagtgccaat gaaaaatcct ttttattatt agagcaaatg cttaaatctt
    10621 tgtttaatgt tgctaataaa gtatcaatag tatcccaaaa tgaaaatgaa ttggctaaaa
    10681 aagttgaaaa catggtcaat caagcaggta atatacaaaa agcaactcaa atgatggata
    10741 agatcgcaga taaaacaaaa ttaccatccc taaatgctgg catagaagta gctagggctg
    10801 gtgcatttgg actaggtttt tctgtaattg ctgaggatga taggcagttg gctcagaaca
    10861 gtgaagaatt tttgggaaat gtagctcaaa ttacaaaaga gcttttacaa agtattaatg
    10921 aggttaacgc agaattaaag aaaaatactc aaagtataca agctttaaat gatgacaccg
    10981 ctttattggt tgatgatgct aatgaggtta aattatgcaa cgaagatgct agggctttgg
    11041 taactcaatg tactgaaaaa ataaaaattt cccaagagaa tatataaaat ttactttctc
    11101 gtatgcaaga aaatgttgaa gtaagtgaaa agaatgaaga aatttctaaa attctacttc
    11161 aagttgtaga tgagttaaaa atagtgtgtc ataatctcga aagcgaactt aaccaatttt
    11221 aaatttaaag gaataaaatg aaaaaaacgc ttcaaattgc tttagctgca actttttttg
    11281 caggttgtgc tagtacttct gttacttcat ctacttctaa aggtaataat gaacttgtac
    11341 aaaatcagct tttcaaaata gaaaaaatta tagttaatgg taaaactttt gatccaaaaa
    11401 acgcagagga aagtccaaat attagttttg aaaataataa attttatggt tattcagggt
    11461 gtaatcgttt ttttggttct tatcaaacta aggcggatac tttgcaaatc gaaggtgatc
    11521 gcgtagcttc aactcaaatg ctttgtcatc caatggatgt aatggatttt gaaaattctt
    11581 tcctttcaaa tttcaaagga atttttaaaa tttcaaatga aaatggaaaa cttgttttaa
    11641 gtaatgatga aatgaagatc ttttttaaat aatatcctaa agcctcgaaa tatcgaggta
    11701 atcttcttaa atttgacaaa agtctaaaaa atgatacaat tataatttta ttatcaaaaa
    11761 aggtagttaa atgataaaat caattcctga atggagtgag caagaatacc tcatgctttc
    11821 tttaccccat gaaaaaagcg attggaatcc ctatttagag gaaattttgc aaagttataa
    11881 agaatttgta aaagcagtga gtgaatttca aaaagtttta cttatagctc ctaaacagag
    11941 tgattttgaa aattttaaag atataaaaaa agtagagtat tttaaatgtg ataccaatga
    12001 tacttggata cgtgattttg gagctataga tataatagaa aatggtcgtt taaaggctct
    12061 tgattttact tttaatgctt ggggaaataa atttcaaagt gagcttgata atgctgtaaa
    12121 ttctaagctt tttaaagaga aatttaaaga ggaacttaaa aaggttgatt ttattttaga
    12181 aggaggaagt attgacttta atggagaggg tgtgatgctt acaagctctc attgtctttt
    12241 aaatgaaaat agaaattctc atctaaacaa aacccaaatt gatataaaat taaaagaaat
    12301 ttttggttta aagcaaatta tttggctaga aaatggtttc ataaaaggtg atgatacaga
    12361 tcatcatatc gataccttag caagatttat agataaaaat accatagcac attgtatttg
    12421 tgaagatgaa gaggatgaac attatttgcc tttgcaaaaa atgaaagaag agcttaaaaa
    12481 aacaggcttt gatttagtag aacttcctat acctaatcct ttatactatg aaggaagaag
    12541 attaggcgca acttatgcga attttgtttt tataaataat gctttaattg tgccttttta
    12601 taaggataaa aatgatgaaa tcatagctaa aagactttct aaagctttac ctagtcataa
    12661 aattatagga gtagatgcaa gagtgttttt acgacaaaac ggttctttgc attgttcttg
    12721 tcaaaatcgt ttcaaaggtt taagatgagt ttgcaaaaaa aagcaactct tgtagcaagt
    12781 ttatgtgcca ttgttttagc cttggttaaa tttatagtag gcttaacaag tggttctgtt
    12841 gcagtacttt caagtgcgat tgattcttta atggattttg ctatttctgc ttttaatttt
    12901 ttggctctta aaaaaagctc acaaaaggcg aatgaaaatt ataattttgg tttttctaaa
    12961 attgaagctt taatgggttt gttagaaggt gtttttatag ttggcgtggg gatttttatt
    13021 ttttatgaga gtattttaaa gatttattat aaagaagaaa ttaaagattt aaattcaagc
    13081 atctatgtga tgatttttgc tttaattatg actttttttc ttgtactttt tttaaattat
    13141 gtagctaaaa aaaccaaaag tttaattata gaaagtgatg ctttgcatta caaaacagat
    13201 tgcttaacca atgcttgtac tttaggggct ttggttttga tttattttac aaatttacat
    13261 attattgatg ctatttttgg gatagtgatc agtctttata cggcattttc tgcttttaaa
    13321 atcattaaaa aagctttagc ttttttaatg gatgaggctt tacctaagga acaagtggat
    13381 aaaatttgta ctttgatttc taataatcct gaaataattt cctatcatga attaaagacg
    13441 cgtaaaactc caagttgtaa ttatttaagc gtgcatttgg ttttttgccc tataatttcg
    13501 cttttaaatg cgcataaaat ttcagatgaa atagaagaag gtgtgcgtaa gatgtttgaa
    13561 aatgaaaaat gggatataca aattcattta gatccttatg atgatgcaga acaagaaagg
    13621 caaagacaat gaaaatcgct ttaatacaac aaaaatttca tttaaataaa gaacaaacta
    13681 taaaaaaaac ttgcgaattt atagaagaag tctctaaaca aggagctgag cttgtttgct
    13741 taggagaact tcatcaaagt gagtattttt gtcaaagtga aaatgtggat ttttttgact
    13801 atgctaatga ttatgaaaaa gatgtgaaat tttgggcaaa tatagctaga aaaaatcaaa
    13861 tagtgcttat tgcttcattg tttgaaaaac gaagtgccgg actttatcat aatactgcag
    13921 tggtttttga aaaagatggt tctatagcag gcaaatatcg caaaatgcac atacccgatg
    13981 atccttgttt ttatgaaaaa ttttatttta ctcctggaga tttgggtttt gaacctataa
    14041 atacaagttt aggtaagctt ggagtgctta tttgttggga tcagtggtat cctgaagcag
    14101 caagaattat ggctttaaaa ggagctgaga ttcttattta tcccacggca attggttggt
    14161 ttgataagga taaagatgaa gaaaaacaaa gacagctcaa tgcttggctt ggcgtacaaa
    14221 aaggacatgc tatagctaat ggtttatatg tagtagctat caatagagta ggttttgaaa
    14281 aagatgtaag cgggatagaa gagggcatta gattttgggg aaattctttt gtttttggcc
    14341 ctcaaggtga agaactttgt cttttagatt ctcaaaacga atgtgtaaaa atcatagaaa
    14401 tagataaaaa aagaagtgaa aatgtgcgtc gttggtggcc ttttttgcga gatagacgca
    14461 tagaatattt tgcagattta actaaaagat ttattgatta aatcaataaa tcttatttgt
    14521 tttgtatatt ttcaagatag ctttttattt gctctttttc ttgttcattt aaatttataa
    14581 aacttatttc tttaagtctt gataaaagca aattatcttc taaaatttca ttttttccta
    14641 tttctaaaga agtgatgacg ctagaactta tgagaagtct ttgggttgca tcttttctta
    14701 agccccatat attatgtatg gcaatattat tatctgtaat ttgtcctgca taaagcataa
    14761 tatgtccagg taaataaagt aagcttaaat aagcttttcc aaagcggttt aaaaaatctt
    14821 ttttttgaga attgctaaga gtgcttatat caaaatgatt aaaagaattt ttttgtgcag
    14881 ctgaatttct tggtagataa agtccaaaag ctgaaaagat atcacgagtt agtaaagaac
    14941 aatctctttc aaaattataa ccgccccagc cataaggcaa atttaaaact tgtgaaagtt
    15001 gattttttaa atttttatca ttgaattgta aaggaaattt agatacatct tttttagaaa
    15061 ttttatattt tttagaacct atttttccat aaaaatagtt tttatcttct ttgtagtaag
    15121 gatagatagc accaattcta ctttcaaaga aaaatttacc atcctcgcta tagatagcaa
    15181 atttttcttt tagtggtgtg ataaagttga gattttcata gattttcgct ctatcgtttg
    15241 agaaaaattc caaattttta ctttcaacaa atccaaatcc agcttcacct aaaacaaaag
    15301 cataacgctt atctttacta aaatgtgaaa ttaagacagg ggatccagta tttaaaatgc
    15361 catcgcttgc atagtcaaaa ggaattcctt cattttcaaa aaaaggattt tttaagatag
    15421 ctctttgggt tggaagattt ttaatgattg tattttggat aatcaaagct ttttgattaa
    15481 gtttgccaaa ttcttggata tttgcgttat ttatagcatt tttaaaccat gaaagcggaa
    15541 taatttgttt attgaaaaaa taataagtat tttttgaatt taaatataaa ggaaaggacc
    15601 aaaaaatatt ttgtcctttg tagtttttaa atgaatcatg ccaagggtta aagaaatatt
    15661 ttttatatcg ttttgcatca aaattaatat tgtaagtaaa ttgtggtaaa atgcttacat
    15721 tttgttcgta ttcaagtttt gcataatgtt tattttcatt tttttgttct aaattttcat
    15781 gatgaagcga agttaaattt tttgttgaac aagctgttaa aaatagcact ataaaagtaa
    15841 aatataaaca agatttcata atcaaccttt tagaaaaaat agttataatt aaagctaagg
    15901 aaatataatg cttgataaac tagaaaaaat tttagcttat gataatgttt ttttaagtgg
    15961 tggcgctgga gttggtaaaa gctttttgac aaatgagctt atcaaatctt atagaaaaca
    16021 aaaaaaatta gccatagctc ttggttctag tgctctatcg gcatttaata taggcggtgt
    16081 tactttacac agcttttttt gtttagggta ttgtgatgat atgatgaaat taagtgcatt
    16141 ggatcgcaat caaaaacaaa aagaaaaatt aacaaaactt aaagagcttt taaaaacgat
    16201 tgagcttatt attatcgatg aaatttccat ggttagcgca aatgtttttg aaatgatagg
    16261 ctttagactt aaaaattctc aatttaatgg aaaaatttta gttgttggag atttttttca
    16321 actgcctcca gtaattaaag aaaaaaaaga aactttattt aaccattctt attatgcttt
    16381 ttcttcattt ttttggcaag atttaaattt taagaatatt aaactttctc aacctaaaag
    16441 aacgcaaaat atggaatttt ataaccattt atctttgatt agacaaggtt ttttagatga
    16501 aaaaatttta agcttttttg aatctttgcg aattgattat aaagaattag aaaatttaga
    16561 agatgattat actttacttt gtggtatcaa taaaaaagta aacaatatca atcaagaaaa
    16621 attaagcaaa cttgagaccc cgcttgtatg ctttaaggct caggttaaaa aagaagataa
    16681 gagaataaaa gatgaagagc ttgatt
//
LOCUS       DARGEM010000023        16205 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.023, whole genome shotgun sequence.
ACCESSION   DARGEM010000023 DARGEM010000000
VERSION     DARGEM010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16205
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.023"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            152..541
                     /locus_tag="SFZ78_000604"
     CDS             152..541
                     /locus_tag="SFZ78_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG8211501.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            523..1026
                     /locus_tag="SFZ78_000605"
     CDS             523..1026
                     /locus_tag="SFZ78_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG8211502.1"
                     /translation="MAEHQINYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            1023..1817
                     /locus_tag="SFZ78_000606"
     CDS             1023..1817
                     /locus_tag="SFZ78_000606"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG8211503.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIASKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            1819..3045
                     /gene="nuoD"
                     /locus_tag="SFZ78_000607"
     CDS             1819..3045
                     /gene="nuoD"
                     /locus_tag="SFZ78_000607"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG8211504.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILAMHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            3042..3269
                     /locus_tag="SFZ78_000608"
     CDS             3042..3269
                     /locus_tag="SFZ78_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG8211505.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3266..3958
                     /locus_tag="SFZ78_000609"
     CDS             3266..3958
                     /locus_tag="SFZ78_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211506.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            3955..6417
                     /locus_tag="SFZ78_000610"
     CDS             3955..6417
                     /locus_tag="SFZ78_000610"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG8211507.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6410..7408
                     /gene="nuoH"
                     /locus_tag="SFZ78_000611"
     CDS             6410..7408
                     /gene="nuoH"
                     /locus_tag="SFZ78_000611"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG8211508.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            7418..8059
                     /gene="nuoI"
                     /locus_tag="SFZ78_000612"
     CDS             7418..8059
                     /gene="nuoI"
                     /locus_tag="SFZ78_000612"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG8211509.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFLGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQNTQEQGENK"
     gene            8056..8574
                     /locus_tag="SFZ78_000613"
     CDS             8056..8574
                     /locus_tag="SFZ78_000613"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG8211510.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELTKEKQ"
     gene            8571..8867
                     /gene="nuoK"
                     /locus_tag="SFZ78_000614"
     CDS             8571..8867
                     /gene="nuoK"
                     /locus_tag="SFZ78_000614"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG8211511.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGIALCVLWYRRKGTLELKSLKEVEA"
     gene            8869..10659
                     /gene="nuoL"
                     /locus_tag="SFZ78_000615"
     CDS             8869..10659
                     /gene="nuoL"
                     /locus_tag="SFZ78_000615"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG8211512.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCTILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            10661..12148
                     /locus_tag="SFZ78_000616"
     CDS             10661..12148
                     /locus_tag="SFZ78_000616"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG8211513.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12138..13526
                     /locus_tag="SFZ78_000617"
     CDS             12138..13526
                     /locus_tag="SFZ78_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG8211514.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYVLFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLIACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTVILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSIFAILLML"
     gene            13548..15914
                     /locus_tag="SFZ78_000618"
     CDS             13548..15914
                     /locus_tag="SFZ78_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8211515.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(15957..>16205)
                     /locus_tag="SFZ78_000619"
     CDS             complement(15957..>16205)
                     /locus_tag="SFZ78_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8211516.1"
                     /translation="ERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQ
                     IDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
BASE COUNT         5144 a         1935 c         3042 g         6084 t
ORIGIN      
        1 cttttttata aatttaatca taaaaaatta aaactttaaa aaatattttt taatataagt
       61 ttcaatatag aaagtttaga gtaaaataaa gaaaagtgta aatttaattt ttgttgtgga
      121 gtgattaaag tgctttaaaa aaggagaata aatgtctcat atagatgctt cgcatcctta
      181 ttttggtatt tttttaatgc tagtacttgc tagtgttatt tttttcggac tggttttttt
      241 agcttcaaaa atcggtaata attttgccgc aaaaaatcgc aaaaaattag gacttggaat
      301 ttatgaatgt ggtcctattc ctgttaaaca agctaacaag attaactctc aatttttcat
      361 catcgcctta atcttcatac ttttggatat agaagttgtg tttttatttc cttgggcttt
      421 gatttttaaa gatttaggtt ggtttgggct tttagaagtt tttattttta tcgtactttt
      481 aggagttgga tttttatatg cttataaaaa aggagcgttt gcatggcaga gcatcaaata
      541 aattatgcaa gtggtttacc cgtagtttta actagtgttg ataaactagt tcaatggggt
      601 aggagtaatt ctttatgggc tttatcttat ggacttgcct gttgtgcgat tgagatgatg
      661 gcggctgggg gttcaagata tgattttgat agatttggaa cgatttttag agcttcgcca
      721 cgccatagtg aagtaatgat tattgcagga actttatgta aaaagcatgc tgaatttaca
      781 agaagacttt atgatcaaat gcctgatcct aaatgggtga tttctatggg aagttgtgcc
      841 aatacaggcg gtatgtttaa tacttattct actgttcaag gagtggatag aattatacct
      901 gtagatattt atgtgccagg ctgtgctcca cgtccagaaa gttttcagtt tgctttgatg
      961 attttgcaaa aaaagatccg caaagaaaaa gcaagtcgta aaatcgcacc taaaaggttg
     1021 gtataatgag aaagtatagc gataaaaaaa atgctcaaac tcaaaattac tacaaagata
     1081 gattttatca cgcgccacac actgtaaaat ctgatgttaa tgaaagtgtt tttaaagagg
     1141 attttgaagt tttaaaaact caagtagaaa ttttaaattc ctttgtagaa cttgattttt
     1201 gggtaataga aattaaaaaa gaagacaatg ttaaaacttt gcaaatgctt aaaactttag
     1261 ggtatttaag ttttacagaa gcaagcgcta ttgattttat agcaagtaaa aatggttttg
     1321 aagtgtttta tcagctttta aatttagaaa aaaaattaag agtgagaata aaaacttttg
     1381 taggcgtaaa agagcgtttg caaagcgtgg ctcatgtttt taaaggggca aattggagtg
     1441 agagagaaat ttatgatatg tttggaattt tcatcataaa tcatcccaat ttaaaacgca
     1501 ttttaatgcc tgatgattgg tttggacatc cgcttttgaa aacttatcct ttaaagggcg
     1561 atgagtttgc aagatggtat gagattgata aaatttttgg caaagaatat cgtgaagtag
     1621 tgggcgaaga acaaagagat tctggttttg ctgatgataa agatacgcta aattttgcaa
     1681 gactttacca tgaagtgcca aaaggtggtc aaaagaagga aatttccttt aaacaagaat
     1741 atcaagaaga tgaaggtgtg gcttttgtaa aaaaagtaaa acgtgatgaa gcaaaaattt
     1801 tagagaaaag gcgttaaaat gcaaattcct agcaagttaa aaccttatta tgaaaatata
     1861 gcttttgagc aagaagactc aaaaatgatt atcaacttag gccctcaaca tccttcagcg
     1921 catggaaatt tgcgtcttat tttagaactc gatggagagc aagttgtaaa agcgcgtcct
     1981 tgtataggtt atatgcatcg tggtatggaa aaaatggctg aaaatatgat ttatcaagaa
     2041 tttattccta ctactgatag aatggactat atcgctgctt cagcgaataa ttatgcttat
     2101 tgtgcagcgg ttgaaaagct ttgtggttta gagattccac gccgtgccgc agtgatacgc
     2161 atgatacttt tagaattaaa ccgtatcaca tcgcatttgc tttggcttgc tactcatgcg
     2221 cttgatattg gtgcgatgag tgtattttta tactgtttta gagaacgaga gtatgttttg
     2281 gatttgatag aaaagtattg tggtgcaagg cttacgcatt cttctatgag aataggcggg
     2341 gttatgcttg atttacctga gaattattta gaagaaatgc ttgcattttg cgataaattt
     2401 ccaaatgatt taaaagatta tgaagatctt ttagatgata atagaatttg gcgtttaaga
     2461 actgaaaatg taggtgtggt tactaaagaa caagccttaa attggggttg tacgggtgtg
     2521 atgttaagag gaagtggcat aaaatacgat atacgcaaag aagagcctta tttgctttat
     2581 aatgaagttg aatttggtgt gccttatgct acgcaagggg attcttatgc aagatataaa
     2641 gtttatatgc aagaatttcg tgaaagtttg aaaatcctta gacaatgtgc catgctttat
     2701 aaagatactc cgcctgaaat tttagctatg catcctgagt atgtaagtgc ttcaaaggaa
     2761 caaattttaa cgcagaatta ttctttaatg cagcattttg ttttaatcac tcaaggttta
     2821 aaacccccta aaggcgaagt ttatgtgcct actgaaagtc caaaaggtga gcttggcttt
     2881 tttatccata gtgatggtac aggaagacct tatcgtttaa aggctagaac gcctagttat
     2941 tggcattgtg cgttttttga agaaatgctt gtaggtactt atttagctga tgttgtagcc
     3001 attatgggta atgtaaatat agttttaggt gagatagatc gatgagaagg gtagatttaa
     3061 gaaaaagcaa agagcttttt gaagatttag cacaaatcat aaaagaagca aaacaaggtg
     3121 aggttttagt ggtgcttttt gaaatcggcg atttttctcc tgttgaaaaa agtttttctt
     3181 ttgtaaaaga acaaggctgt gagcttttaa attctttgaa atttaatcaa gtggattgga
     3241 ctattgttat aaaaaaggag agagtatgat ttatgataat gctctttgtt ttttagatat
     3301 gccaagcctt aaaaacaaaa atttatgtga aaaaataggt gtaaatagta ttaatatttc
     3361 ttgtttggaa gataaaaact taaaagctaa attttacaaa tgcgaaattg caagtttgag
     3421 ttttgttttg gccttgcttt gtaaattaag cgatgaagga caattttgcg atttagatga
     3481 gggatattta agtgctgaat cttgttttgg agaggaagaa gcaggcgaag tgcttgcttt
     3541 tttaaaagag actaagtatt taattataga taaaaatatc cattcttata aagatagtga
     3601 aaatatcaaa tattttttga atttcctaag tgtaaaatat ggattaaaga ttttagatag
     3661 cgatgaagaa gaatgcgatt ttaaaaaggc aaaattaaac accctaaaag aactcgataa
     3721 ttatgacggg ttagtgcttt ttagagcaaa tttgcaagat aaaaatttac attgttcaaa
     3781 gcaattttta caaattgcaa aatgcaaaga tcaaagtgaa gttgaaattt tggctaaaga
     3841 ttttagtctt aaaaccaagc tttgtttaga tgaaaattta caaggcacta tagctttttt
     3901 aaattatgaa aacaatggtt ttgattttac tccaattcgc ataaaggaag caaaatgaca
     3961 gttaagatta atggtataga ttgcgccttt gaagaaggcg aatatatttt aaatatagca
     4021 agaagaaatg atatttttat cccagcgatt tgctatcttt cgggctgtag tcctactttg
     4081 gcttgtcgta tgtgtatggt tgaagctgat ggtaaaaagg tatattcttg caatactaaa
     4141 gcaaaagagg gcatggttgt agaaagtgat ttacaaaatc tttgggatga aagaaatgag
     4201 atcatgcaag cttattgtat caatcatcct ttagaatgtg gagtttgtga taaatcaggc
     4261 gagtgtgaat tgcaaaattt cactcataaa agtcgtgtaa atgttcaaaa atattggatt
     4321 aaagacacgc ataaaccgca taaacattgg ggaatgatta attacgatcc cgcactttgc
     4381 atagtatgtg agcgttgtat tacagtttgt aaggataaaa tcggagaaag tgctttaaag
     4441 actgttcctc gtggcggaga tagtgtggat aatagcttta aagagagcat gggaaaagat
     4501 gcttatgcga tttggactaa atttcaaaaa agtttgatag gccctacaaa tggcgacacg
     4561 cttgattgtt cattttgtgg agaatgtaca agcgtatgcc caacaggagc tttaataggt
     4621 tcgaaatttc aatacacttc aaatatttgg gaacttaaaa gaatccctgc ttcaaatcca
     4681 cattcaagcg attgtgagtt gatgtattat gatattaagc aaagcggcat tagcaatcaa
     4741 aaagaaaaaa tttatcgtgt gagtaatgat tttgcctttg cgagtttaaa taaggctgca
     4801 agatttgctt ttgatacgca aaatgaggcg gataaagatg aaaaagcctt taaagaactt
     4861 gtggagcttt ttgagaaaaa tgaaattaaa aacattaaat ttaatagttt tattaccaat
     4921 gaagaagctt tgattttaca aaatttaaaa aagaaattta atctttcttt aatcaatgaa
     4981 gaagctttga aatttaaaga atttttacaa gaatttatcg ctaattctgg tgagttttat
     5041 agcgctaata ctcaagatat aacaaaaagt gattttttgg ttgtggctgg aatgctttta
     5101 agatatgatg ctccaacgct tagttataaa atcaataatg ctttagtgat gaataaaggc
     5161 tcagggcttt attttcatcc tatggaagat atgggtatag caaaatattc taaaaatttt
     5221 atctcgcaca ttcataaaag tggcgatgaa gagcaaattt tatatttttt acttcaaaaa
     5281 tttagccaag atgaaggtat caaaactcat ttagcagagt tttttgttag tgaaaataaa
     5341 gaaatagaag aaagtatcaa cgaagaagtt gtagaacaag tcatagaaaa agatgaagaa
     5401 ggcaatgaaa ttcaaaaaga agtaaaaaaa gtcgtaccta agaaagtgaa aaacaacata
     5461 gaagtacaac gctctgtttt tgctaaaaat ttaggcatag atgaagataa attagaagat
     5521 ttattgctta aaaaagcaaa ttttactctt gttataggga gtgattttta ttttcataaa
     5581 aatgcgaaaa aacttgctaa attacttgct ttgatccaaa ataccactcc ttttaaagtc
     5641 tttttaaatc ctacgcatac taatacctta ggtgtggcta tgatttgcga tttggataac
     5701 aatacacaag aaggcaagac tttaggctac aatgaaaaag gtgattttag tttttcttat
     5761 gaagagcatg caaatttagc tagtgcgagt ttaaatcagc aagaaggaac ttttttaaat
     5821 tatgataaaa gagtggtacc aactaacgct gctttagaat ttaagggata ttttttaaat
     5881 gatttggcta atgctttagg ttttgatgag gaatatacta taaattatac taagagactc
     5941 cctataaata aaggtttttc tccgattgat tttgatcatt tagacaattt ttataccaat
     6001 gcaggcgatt gtaaaagggg atatgagctt aatttagaat gtttcaaaca agttgctaaa
     6061 aaagaattca tctctccaaa ttttgaaaat ttaagcctaa aagaagatga aattttgctt
     6121 tatagtgcta atcctagcta tcaatttggt agattttcaa atcgtgctag tgcgattaat
     6181 gaggtgattt ttttaggtgt aagtgaaaat ttagctaaag agaaaaattt aaaagataaa
     6241 gatcttgtaa aacttaaaat aaaagataaa gaattaagcc ttagtgtgcg tgtggataag
     6301 gatataaaaa atggagcttt cttgccgtat tttgatgaaa aacttgacac gctaagcttt
     6361 tttgatgaaa gatttgttgt ggcgaattta gaaaaattag gagcaaacca tgagtgattt
     6421 tgcttttttt gctttagaga ctttgattaa atgtattatt atcattgcaa tatttgcgag
     6481 tttagcaggt cttgcaactt atgctgaaag aaaggtttta gcttattttc aaagacgcat
     6541 agggcctgat atggtagggc cttttgggct tattcaactt gtagctgata tgataaagct
     6601 ttttactaaa gaagatataa tcccttcaaa ttcgcaaaaa tttatttttg ctatagcacc
     6661 tttgatttct gctatttgtg cttttatttc tttagcagct attcctatgc tacctgaatt
     6721 tactttattt ggaagggtta ttcagcctat agtggcagat atcaatgtag ctttgctttt
     6781 tgtcatcggt acttcaggac tttgctttta tgcggtgttt ttgggtggac ttgcaagtaa
     6841 taataaatgg tcgattttag gggctgcaag agggcttgta gcgattattt cctatgaaag
     6901 cgtaggagct ttagctttga ttgctattat aatgcttgta ggttcttttt ctttggtgga
     6961 tattaacaat tatcaaagcg atggattttt ttcttggctt atttttaaac aacctttggc
     7021 ttttgtgctt tttataattg ctttatttat agagactaat agaactccgc tttgtttgac
     7081 ggaaaatgat gctgaaattg tagcgggtta tggaacggag tattcgggtt taagatgggg
     7141 tatgtttttc ataggtgaat atacttctat gatagctgga gctattttgg tcactctttt
     7201 gtttttaggg ggttttaata gcttttggat tattcctggt tggattatga tgatagtaaa
     7261 atcaagtttt attttctttt ggtatttttg ggcaagagct gcttttccgc aattgcgtcc
     7321 agatcaagtg atgaaaatgt gctatttgat cttaatccct ttagctgttt taaacctttt
     7381 aatcactgct ttggcagttc ttttatagga gtttgatatg aaaaattatt acttagtgga
     7441 tgagaaaaga aaaactcctg ttagcacttg ggagaaaatt tcacaagctt tgcgtagaag
     7501 tgttaaacta gagctttttc tagggctttt tgtgatgatg agagaattgc ttaagagaaa
     7561 taatagcgct acgattaaat atccttttga aaaggtaaaa cttgacaatc gttaccgtgc
     7621 tgttcatcgt ctgatgcgtt ttatagaaag tgaaaacgaa agatgtatag gttgtgggct
     7681 ttgcgaaaaa atttgcatta gtaattgtat cagaatggaa acttctttag atgaaaatgg
     7741 gcgtaaaaaa gtaggaaatt atagtattaa tttagggcgt tgtatttatt gtggtttttg
     7801 tgctgaggtt tgccctgaac ttgctatagt acatggaaca gagtatgaaa atgcagctga
     7861 gcaaaggtct tattttggct ataagcaaga ttttttaact cctattgata agcttaaaaa
     7921 tcaagttgaa tttgaaggag caggaagcct tagaaaagat gctgatttat tggtggtaaa
     7981 aacaccaaat tattacgatg tgatgattga aagagcctta gaaaatcaaa atacacaaga
     8041 gcaaggagaa aataaatgat agaaaatttg gcttttgtat tttttagtgt agtggtttta
     8101 ggcttttttg gcattgcggt tttaagtaaa aatatgcttt attctctttc tgctttagcg
     8161 ggtggaatgg tgtttttatc gggattttat tttttgcttg atgcagagtt tttaggcgtg
     8221 atacaaatta ttgtttatag tggagctgta cttggacttt atagttttgc gatgatgttt
     8281 tttgatgctt ctaaagaatt taaagaacaa cttaaagcta aaaaaagttt ttttactttg
     8341 gtggttttaa gtgcgatttt acttttgact atgcttatag gttttaaata ccaaaatatc
     8401 agcacggatt tgcctttaaa tgatcctgct ttgtttgatt ttaataaaca actggcttta
     8461 gcgatttttt caaaatatct tttagctttt gagtttatag ctattttgct tttgatcgct
     8521 ttagtttgtg ctatcactct tactcataaa gagcttacaa aggaaaaaca atgatagaaa
     8581 agtatttttt cgttgctatt ttaatgtttg tcatagggct tgtagggatt ttaaaaagac
     8641 aaaatctcat tatgcttttt atttcgagtg aaattttatt aaatagtgct aatttagctt
     8701 tagtagcagc ttctaaaatg cacaatgatt taaatggaca ggtttttgcg ctttttatca
     8761 tgggtgtagc ggcttgtgaa gtagctgttg gtatagcttt gtgtgtgctt tggtatagaa
     8821 gaaaaggcac tttagaatta aaaagcttaa aagaagtgga ggcttagtat gcaaaatttg
     8881 gctttgattt ctctttttag tccctttgta gcttttttgt ttgcaagttg ttttgctttg
     8941 agtgagaaaa aacaattcgt agggatattt tgttcacttc tagtagcttt gagtactttt
     9001 tgttctttgt atttgctttt ttgcaatgaa gcttttaatg tgagtttgtt tgaatggttt
     9061 gctggagtaa attttggttt tgatatagat gctatttcgc ttactatgat gagtattgta
     9121 ggtattgtag ccacttgtgt gcatttttat agtatttttt atatggctca tgatgaaggt
     9181 tttaataaat tttttgctta tttggggctt tttgtctttt ctatgctttt tttagtcatg
     9241 agtgataatt ttttaggact tttcgtaggt tgggaaggcg ttgggctttg ctcttggttg
     9301 ctcataggtt tttggtataa aaatgatact tattcttttg cggctaatga agcttttatt
     9361 atgaatcgta ttgcggattt gggtatgctt ttaggaattt tttggcttta tttgcaagca
     9421 ggaactttaa aatatgatga agttttttcc atggcacaaa gcctagatca caatgctttg
     9481 atcttaatcg caacttgttt atttataggg gctatgggaa aatctgcaca atttcctttt
     9541 cacacttggc ttgctgatgc tatggcaggg ccaactcctg tttctgcatt aatccatgca
     9601 gcaaccatgg taacagcggg ggtttatttg gtaattcgtg cgagtacgct ttatgattta
     9661 gttcctgaag tttcttatat tattgcctta ctcggagctt ttgtagcgat ttttgcagcc
     9721 tctatggctt tggtggttag ggatttaaaa cgcattattg cttactctac cttatcgcaa
     9781 cttggatata tgtttgtggc tgcaggactt ggggcttatg gtatagcttt atttcactta
     9841 gctacgcatg ctttttttaa atctttactt ttcttaggcg ctggaaatgt aatgcatgct
     9901 atgaatgata aattagacat taaaaaaatg ggtggacttt ttaaaccttt aaaaattaca
     9961 gctattttaa tgtgtatagg atctttagct ttagcaggaa tttatccttt tgcaggattt
    10021 ttctctaaag atttgatttt gggatattct ttcatttctt ttcaccatgg tattttttta
    10081 gtgctcttaa tcgcagcttt tttaacagca ttttatagct ttagactttt aatgttggta
    10141 ttttttaccc ctgcaagaca tgatgaacat ccacatgaag caagtaaaat cgcacttttg
    10201 gctatgagtc ctttgatggt tttagctatt attgcaggat ttttcgaaca tagttttttt
    10261 gaatatttaa gcacaaaatt agtttttatt gatgcgcaaa atcaaattgt aatgatttgt
    10321 gcgagtgtag cagctatttt gggtgcaatt ttggctattt ttgcttataa aaattcttgg
    10381 tttaaagaaa gtattgaaga aaataaaatt cacaaacttt taagtaatga ttattttatt
    10441 cctagatttt atcatcaatt tatcgtttca aaatatgaaa gcttatgtac gattttaaaa
    10501 cattgtgatc tttatatttt tgacagaata gttgaaaaaa ttgctttgta ttctcaaaat
    10561 atttcacaaa aaatgattat gccaaacagc ttaaacttaa tgcttaggtt tttggtggca
    10621 gcttttgtga ttttgttgat tttagtatgg atggtgtaaa atgctaaatt atttgatatt
    10681 ttttccttta atttctgctt ttgtggtttt gctattaaat cgcggaggcg ttaaggtttt
    10741 tagcgttgtt gtaagtttta tgattttggc tttaaatttg gatatttttg cggatttttt
    10801 acaaggggta agctttgatt ataatctctc ttttaaaatt ttgaaatttt ttagctttca
    10861 tgtaggagta gacagtattg cacttgtatt gatgctttta agttctttga tgatattttt
    10921 aagcttttta tttttgaaac tagaacaaaa agcgcttata tcttgtatat tctttttaga
    10981 atttgctatt atgggacttt ttagcgcaaa agatggtttg ttgttttatg ttttttggga
    11041 attttctctt ttgcctttgc tttatattat gggggtttat ggtaaagatt ttagagcagg
    11101 ggtgaaattt tttatctatg cttttgcggg ttcaatttta atgcttgtag cattgattta
    11161 tcaagcttat ttaaattatc agcttttaaa tatcttcact tttgacttgg aaatttggaa
    11221 aaataatgcc tcagcagtaa attttacaga gcaactttta ctttttggag cattttttat
    11281 cgcttttgct atcaaagctc ctttatttcc acttcatact tgggcaccta aggtttatgc
    11341 aaattcgcct atacttgttt ctgtaatgct tgtagttttt aaaatggctc cttttggatt
    11401 tttacttttt tgtttaccac tttttccaga tgcgagtgtg tattttatgc ctttaattgt
    11461 agctttatgt atagtaagta tcgtttataa tgctttaatt gcttatagag cagaaaatat
    11521 taaagaattg attgcttata gttctatttc acatcttggt gtgatgattt tgggaatttt
    11581 ttctttaaat gctttgggta ttagtggtgc ggttttttat atgtttgcac atggtattgt
    11641 aacgggagct ttatttttaa tggttgaact tttataccaa agatatcata cttatgatat
    11701 ttctttttac cattctttag ccaaaaaagc acctttattt tcaattttct ttatgctcat
    11761 tttacttgcg agtgtttctt tgcctttaac tgtttctttt gtgggagagt ttttaattct
    11821 tttaggtata gcaaagatta atttatttta cgctttgttg gcaggtttgg tgattatttt
    11881 aggagcgatt tatatgttcg cagtatttag aaaaatattt ttcatgcaaa aacaaagctt
    11941 tatagagggt ttttctttac gttttagaga aatagtagcg cttgtgtgca ttgtagtaat
    12001 gatttttgga ctagggctta tgccaaatat acttttaaag ccgatacaaa aagatgtgga
    12061 taatcttata aaaacaatga atattagagc tgttgagcaa aatactttag attttttatc
    12121 taaaatagga gaggcaaatg ttaaataatt ttttaaattt agaactttta aatataagct
    12181 tatcttatcc atttttattt ttaattacaa ctgcaatagt tcttttgctt tgctctggtt
    12241 tttggaaatt tcatcgatcg ttttatatcg gcataagttc tttgtctttg attgtaagtg
    12301 cttttttgat tttaaataat gcaaatgctc aaggtttaga agcaaaagct tttttggcta
    12361 ctttaaataa tgatattgtt tcattttatg cttctttggt gattttgtgt ttttcatttt
    12421 tatatctttt aatgcaaaaa gaagaaaatc aaggtgaatt ttatgtttta tttttattta
    12481 tgattgcatc tttgctttta atggtttcaa gttcaaattt agtacttatt tttataggac
    12541 ttgagagttc ttctttagca ctttatactt taatagcaat gcgtggaagt gataatgcta
    12601 tttcaagtgc gataaaatac tttagtgtag cggctgtagg agctgggttt tttgttatgg
    12661 ctgtagcttt tatttattta aaaacaggaa ctttagattt atctgctaat ttagcgttga
    12721 aaaatgagtt tcaaaaagat cccatgcttt tgggtgctgg agtgatgatt ttcgttcttt
    12781 gtgcaattaa gctttctttg gcgccttttc atttttggct taaagatgtg tattatgcag
    12841 cacatacaaa tttggttgct tttatttcag ttgtcccaaa agttgccatg ttggttgtgg
    12901 ttattcgttt gtttgatttt ttaaataata caggttttga atatatcata atagttctag
    12961 cgattttttc tatgcttata ggcgcttttg cggctctaag tcaaaacaat atcaaaaaaa
    13021 tgtttgctta tagttctgta gtgcattctt ctttggtttt gatagcttgc attcctttat
    13081 taaaagaaca aaattttgat ggaattttgc ttgctatttt tggatattgg actttatttg
    13141 cttttgcaaa ttatgctgta tttatgattt taagtaatta tgagaataat tcttatgaga
    13201 gtttaaatgg gcttttggtt aaaaaacctt taattgcttt ttgtttaagc attagtgtgc
    13261 tttctttagc aggtattccg ccttttggag tattttgggg taaatttatg attttaaata
    13321 cagtaatttt aaatggatat tggtatttgg cgctttttgt ggctttatct tctgttatta
    13381 tgctttatgc gtatttaaag attttaattc atgttttatt tatgaaaaat gatagggttt
    13441 ataatattaa gtttagtttt atacaaaatt ttattttagc tttttgtgtt tgtgtaagca
    13501 tttttgctat attgttaatg ttataagagt tttgctataa ttattttatg agaatattat
    13561 ttttaatttt attaagtttt ttaaatgctt ttgcttttga gcttgtttta aacacgggtc
    13621 gcgaaaataa tcaagctttt gcagttttac atgcgagtaa tgatttagaa tttacatgtc
    13681 aaaaatttat taccgaagca aaagttcatt ttgaatgtga tattgcaggt atggttgata
    13741 ataaattaaa agatcagagt ttttctgctt ttgatttaaa atttatacaa gaagctcaaa
    13801 aaattaaaat gatcattttg ccaaaaatac aagcaagaat gtttgacact tctcaaaata
    13861 tttatataga taaagaactc agttcatcaa gttcgcataa aagtaaggct tttactttta
    13921 tttttacacc agaactagca cctattaaag actatgatgg actcgatttt aatatcaatt
    13981 ttccacatga gagtttgcct tatgttggag ctttggattt aaattctgat cctgttgtta
    14041 ttcctcaaag tgcagatatc aatacttatt tacgcatcaa aaaagaatac gataaggcta
    14101 attacaatca agtggtgatt gatgcacaaa atgctatcaa tagatatcgt ggcagtattt
    14161 ttactagtga atttatactt tataaattaa gagctcaaaa taaactttac actcaagatc
    14221 caagcatgcg tgatcaacaa attttagaaa agatgattga tgatgctaaa aattggacgc
    14281 gtacttttac aagtgataaa aatttttcag aagttttaca tataatgtta agaacttata
    14341 tcgctttagc tcagcgtgct gatgtagagt atacaatgtc gattttggat aatgaacaac
    14401 ctaataatta ttttactcag ttatcaaaac ttgattatgc agactatatt tataatttaa
    14461 atgaaaaaga aaaagctgta aatatttatg aaaatactta ttttaataca aaaaatttag
    14521 atttagctgc aagagcagct atgagtttgg caaagaattt gctttcaaat gagcaagtaa
    14581 ataaagctat agaatatatt aataccattt taaaagccaa tcctgaatat tttggaaaag
    14641 atattccaag atctttagaa cttgctaaat tatttaatca aaagggacaa tttgatataa
    14701 gtgcaagtat ttatgaagat gcctttgcta aaatgtccaa acttgatcca agttatgaag
    14761 aaactttaaa agatttagcc ttggttttat cacatgctaa cagatctagt gatgctaaaa
    14821 aataccttga tttgtatatg gatgattatt tagatggtaa gtatttagat gaaattaaaa
    14881 aagcaagtga tgaggtattc tttgctttag gtgataataa tgcaagcttt ttgcatcagc
    14941 gttatacaga tttaatgaag caatatgcaa ataaagatga gaatattgca aataaagctt
    15001 tagatgaaga tgttgcactt tattataaag agggaaattt tagtgctatt ttagcttata
    15061 aagatcttat agaaagtaaa aaaattccaa atgctactca atttttagag aaagcagcca
    15121 ttaatgattt aaaaaatgcc ataaaagctg ataattgtat caatgctgca aatattttta
    15181 tgcgttttag tgcttatgat ataggtcaga aaattgagaa taaaaaacaa atgttagctt
    15241 gtcttatcag aacttctaat gttgaacaag cacttgatta tatagataaa aattataatg
    15301 aagattctat attttatggt cttcaaaaag catctattct ttttgacaat aaacaatatc
    15361 ctcaggtgat taaaatttct aaagacatag ctaattctag aattttaaaa agtgatgatg
    15421 agaattttaa ggcttattat ttgcaatttt tatctttatt gcgtttaaat gactataatc
    15481 aagccattaa aattttgcaa attttagaaa gttttccaat gaattttagt atggtggaag
    15541 cttatgatgc tttactttct tacgctaatg atcataatat gcaaacaact attttaactt
    15601 acgcacctaa ggccattgac tatcaaaatt ttaaaggtat aaatcttttt agtcctaatt
    15661 tagaatttat atatcttgat gctttgacta aaatcaataa aaatgaagaa agtttagctg
    15721 ttttaacaga tttacttaaa ttaaaacttt cagatgaaga tagagcaaga gctttatata
    15781 tccaagcctt aacttatgaa agaatgcaaa atatacaagc tgaaaaagaa agtttaaaac
    15841 aatgtcttga aatcaaaagt gcttcaaatt ggcagaattt atgtaagagt aaaaatcaaa
    15901 ttttaaatca ataagtaaat ttagagataa ctagcttttt ggctagttat ctaaggttaa
    15961 aaccttttct tcttaacatc ttctaagata ttattagcta tatcacttac tgtactagaa
    16021 ataatagctg attcattagc aatttcaaca ttatctttag tagtttgatc aatttgagct
    16081 acgctatcat tgatttgagt gatacctgca gtttgttctt taatactttc tgccatatca
    16141 ttgatagatt gaacaagtaa attagtatta gcttcaattt ctgataaaga cttttgagtt
    16201 ctttc
//
LOCUS       DARGEM010000024        16089 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.024, whole genome shotgun sequence.
ACCESSION   DARGEM010000024 DARGEM010000000
VERSION     DARGEM010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16089
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.024"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..667)
                     /locus_tag="SFZ78_000620"
     CDS             complement(<1..667)
                     /locus_tag="SFZ78_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8211517.1"
                     /translation="MLLKAKYKKNISFFFKSLLISLQNFLKQFKPKKYKAYNKYVIVS
                     AVYNVEKYLDDFFKSIINQRLDFKNNIHLICVDDGSTDNSANIIKKYQKKYPKNIIYL
                     YKENGGQASARNLGLKYLKENNLNIPWVTFTDPDDFLDRDYFYEVDSFLKNQNNIAMV
                     ATNIIFYREKRKILYKDTHALNFKFKKHKSVYDNIKLNENIQLSVASCFLKCDYLKDT
                     FFDE"
     gene            complement(669..2297)
                     /locus_tag="SFZ78_000621"
     CDS             complement(669..2297)
                     /locus_tag="SFZ78_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8211518.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVIEKAKYFKSDENIEFIFVEGY
                     SSKNHELKNFIQANHHIYLKDMEQKAFSQGKCRNLGASCAHSNVLLFLDVDCYISLDN
                     FGKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYNDKFWDILIQEDLFTARNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYMYHFYHIEPNQNAYMQNKDKNHQFFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGEIIYKNISDFFIDKE
                     LKYELLLNFLQQEKITKIFLDASIKLQFDDIDYCDIFYFQKGILPHSWFFTKNLDLDY
                     KQDLNLSEQKLYQVKKYFLTLKEDEKKVILDLLGQNNDDKCDLYEMLYYLINELYSFE
                     HEGIFYQIIIDKEKILMAQKHDKSFYPLRSFVYKPYLHELKSIRPFSFLMKILGLEYL
                     GAMISHTKFYRLARKLFFNPKGFFEDLRIKKARN"
     gene            complement(2297..3244)
                     /locus_tag="SFZ78_000622"
     CDS             complement(2297..3244)
                     /locus_tag="SFZ78_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG8211519.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEERVIGIIQLYAIGNV"
     gene            complement(3254..4912)
                     /locus_tag="SFZ78_000623"
     CDS             complement(3254..4912)
                     /locus_tag="SFZ78_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG8211520.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVVQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(4914..6032)
                     /locus_tag="SFZ78_000624"
     CDS             complement(4914..6032)
                     /locus_tag="SFZ78_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG8211521.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTANEDLNYLKGYIESSDMLRILDEKIKLKDL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNGLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(6032..6694)
                     /locus_tag="SFZ78_000625"
     CDS             complement(6032..6694)
                     /locus_tag="SFZ78_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211522.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGQE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQIAVYDDVDEGIAVYQG
                     KA"
     gene            complement(6691..7473)
                     /locus_tag="SFZ78_000626"
     CDS             complement(6691..7473)
                     /locus_tag="SFZ78_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211523.1"
                     /translation="MLNVIHALFFRELKTRFGANRHLGYLWVVGEPMSITLAITVIVT
                     IIREYHHQVMPEGISIFMFLISGIMPYFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRFDVFPVHLLGVLFCIFLLMCSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLMPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(7545..7952)
                     /locus_tag="SFZ78_000627"
     CDS             complement(7545..7952)
                     /locus_tag="SFZ78_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211524.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQKKIYFSKFPFAI
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            8027..8590
                     /gene="ciaI"
                     /locus_tag="SFZ78_000628"
     CDS             8027..8590
                     /gene="ciaI"
                     /locus_tag="SFZ78_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG8211525.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            8626..9315
                     /gene="dut"
                     /locus_tag="SFZ78_000629"
     CDS             8626..9315
                     /gene="dut"
                     /locus_tag="SFZ78_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG8211526.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            9317..10030
                     /locus_tag="SFZ78_000630"
     CDS             9317..10030
                     /locus_tag="SFZ78_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG8211527.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(10013..10978)
                     /gene="tilS"
                     /locus_tag="SFZ78_000631"
     CDS             complement(10013..10978)
                     /gene="tilS"
                     /locus_tag="SFZ78_000631"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8211528.1"
                     /translation="MQIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(10968..12287)
                     /gene="rimO"
                     /locus_tag="SFZ78_000632"
     CDS             complement(10968..12287)
                     /gene="rimO"
                     /locus_tag="SFZ78_000632"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG8211529.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            12361..13458
                     /gene="prfB"
                     /locus_tag="SFZ78_000633"
     CDS             12361..13458
                     /gene="prfB"
                     /locus_tag="SFZ78_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG8211530.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(13616..13822)
                     /locus_tag="SFZ78_000634"
     CDS             complement(13616..13822)
                     /locus_tag="SFZ78_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211531.1"
                     /translation="MFDLGNQEIMKKYPNHKLYDYTSVRTISDINNPEGKIKEMKRDL
                     EIDKTPYSNYVFLLNPNDKKTIKL"
     gene            complement(14052..15170)
                     /gene="truD"
                     /locus_tag="SFZ78_000635"
     CDS             complement(14052..15170)
                     /gene="truD"
                     /locus_tag="SFZ78_000635"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG8211532.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDVSAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(15139..15960)
                     /locus_tag="SFZ78_000636"
     CDS             complement(15139..15960)
                     /locus_tag="SFZ78_000636"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG8211533.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKYGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         5614 a         2801 c         1998 g         5676 t
ORIGIN      
        1 tttcatcaaa aaaagtatct ttaagataat cacattttag aaaacatgat gcaaccgaaa
       61 gttgaatatt ttcatttaat tttatattat cataaacact tttgtgtttt ttgaatttaa
      121 aatttaaagc atgagtatct ttatataaaa tctttctttt ttccctataa aaaataatat
      181 ttgtagccac catagctata ttattttgat tttttaaaaa actatctacc tcataaaaat
      241 aatccctatc taaaaaatca tcaggatcag taaaggttac ccaaggaata tttaaattat
      301 tttcctttaa atattttaaa cccaaattcc tcgcacttgc ttgaccacca ttttctttgt
      361 atagatagat aatatttttt gggtattttt tttgatattt tttaatgata ttagctgaat
      421 tatcagtaga accatcatca acgcaaatta gatgaatatt atttttaaaa tccaatcttt
      481 gattaattat agatttaaaa aaatcatcta aatatttttc cacattataa accgctgaaa
      541 ctatgacata tttattatag gctttgtatt ttttaggttt aaattgtttt aaaaaatttt
      601 gtagggaaat taacaaactt ttaaagaaga aagatatatt ttttttatac tttgctttta
      661 acaacatatc aatttctagc ctttttaatt cttaaatcct caaaaaatcc cttaggatta
      721 aaaaacaatt ttcttgccaa gcgataaaat ttagtatgtg aaatcatagc accaagatac
      781 tctaaaccta aaattttcat caaaaatgaa aaaggcctta tgctcttaag ctcatgtaaa
      841 taaggtttat aaacaaaaga tcttaaagga taaaagcttt tatcatgttt ttgtgccatc
      901 agtatttttt ctttatcaat gatgatttga taaaaaattc cctcatgctc aaaactataa
      961 agctcgttaa tcaaataata aagcatttca tacaaatcac acttatcatc gttattttgg
     1021 cctaaaagat ccaaaatgac ttttttttca tcctctttta aagttaaaaa atatttttta
     1081 acttgataaa gtttttgctc acttaaattc aaatcttgtt tataatctaa atctaaattt
     1141 tttgtaaaaa accaagaatg aggtaaaatg cctttttgaa aataaaaaat atcacaataa
     1201 tctatatcat caaattgtag ttttatactt gcatctaaaa atattttagt gattttttct
     1261 tgttgtaaaa aattcaacaa aagttcatat tttaactctt tatctatgaa aaaatcactt
     1321 atatttttat aaatgatttc tcccacataa acactaatat ccttaaaatc ataattttga
     1381 tctttaaaaa gcattaaaac tttttcacct ttggctttaa aaacttgcaa aggttttaaa
     1441 tcgtgttttt tgatgttttt taaatgctta taaaaaaact gatggttctt atctttattt
     1501 tgcatataag cattttgatt gggttctata tgataaaaat gatacatata aattccataa
     1561 aaacaagcct cataaccaag taatgaaaac caagatctaa aacctttaaa gttaaaaaaa
     1621 ttccaatttc tagcatcata acttaaatta gtaggcattt tttcaaaact cacacaagct
     1681 tttaaaattc tagcaaaaag atcaaaatct tcataaccat gtccaataaa attttcatca
     1741 tttccgccta atcttaaaaa ctgatgttta tttatcacaa tacttgaagt agaacttggg
     1801 gcaaaaaatt ttacccaagt atttcttgct gtaaataaat cctcttgtat caaaatatcc
     1861 caaaatttat cattgtattg ttttaatttt tcattagctt ctttattaag atacactaca
     1921 ggtaaaacta tcaaagcatt gatattttga gaaatatttt taatttgaat tagttttaaa
     1981 atttttccaa aattatccaa ggaaatataa caatccacat ccaaaaacaa aagaacattt
     2041 gaatgcgcac aacttgctcc taaatttctg cattttcctt gagaaaaagc tttttgctcc
     2101 atatctttaa gataaatatg atggtttgct tggataaaat ttttaagctc gtgattttta
     2161 gatgaatatc cttcaacaaa aataaattct atattctcat cacttttaaa atattttgct
     2221 ttctcaataa ccctttcttc tatataagga cgctccttac ttaagccaaa aggaataata
     2281 acagataaaa gagccattaa acatttccta tagcataaag ctggataatc cctataaccc
     2341 tttcttcttt ccctactata atttctttga ttttatgttt tagcatgatc tcctctgctt
     2401 cacttgccat agcatcagca tcgactactt taggatttgt actcatgatt tctttagctc
     2461 taaaatcaaa tcttggttta tcgcttgtct ttaaagcacg acgcaaatcc ccatcagtga
     2521 tgatacccac taatttttca ttctcaagta ccacacaaag ccctagtttt ccactagtca
     2581 tcacatcaac aagatcgtta aattcagtat caggatgcac tataggaagg ttacttgaaa
     2641 ccataagatc ttttaccttg gttaaaagct tacgtcccaa acttccccct ggatgaaaaa
     2701 gagcaaaatc atcaggcttg aaatttctta ccttcatcaa agcagcagct aaagcatccc
     2761 ccataaccaa agttgcggtt gtcgaagaca taggagcaag ctgcaaagga caagcttcct
     2821 tttccacagc tatatttaaa aatatatcgc tttgctttac aagggtggaa ttttttttac
     2881 cacacattac tataagtgga attttacgct tttttatagc tggaatgatt tttaaaattt
     2941 cttcagtttc tcctgaattt gaaatagcaa ttaaaacatc ttcaggagtt agcattccaa
     3001 gatctccatg caaagcctct cctggatgga tgaaaaagct tggcgttcct gtacttgcta
     3061 aagtagctgc tatcttagca cctatatgac ctgatttacc cattccactg actatgcaac
     3121 gccctttggt atttagcatc aaattcacag cttgattaaa attttcatct aaatttttag
     3181 ccaaatccaa aatagcttgt gcttcttttt caaagacttc tttggctatt tcaagagtat
     3241 tcatttttaa accttaaaga ttaagtacaa cattggttgc aatagcaatt tgataaagaa
     3301 tttgagttaa cattgaaaaa atttgcaaat tctcactatc tacttttggc aataccaaca
     3361 cagaatcgcc tcgtttcata tctataccac tatgatattt ttcagctttt ccattgcttc
     3421 gtatcactaa aacttttgaa gtatccgctc tttctccata acctcctgca agattgatat
     3481 aatatcttaa atctttgccc ttatcataca caaaagctcc aggtaaagaa acctcacctt
     3541 gaactatgat gagattattc ttacttggta cattaatagt atcaccatct tctaaaataa
     3601 ccgaattata ggactttgga ttatcaatga caatttgacc cttaggctct acttgcttag
     3661 ctctttggat aaattctaaa atcgtttttg cttgttgagc tcttatagct gcaccttgag
     3721 ctgtaacaga accactagtt aaagctagag tttcaagctc tttaagctga gcattgataa
     3781 gttctttttg agttctagct acactttttc taaacacttg taaagcttgc atgtttgatt
     3841 gtggattagc tttaattaat ttagaaatat cttctaaagt cgttccttta cccacaacta
     3901 aagtttttaa accattatgc tcgccattta cacttatagt tatattttca gaaacatact
     3961 cagggtgaaa ttctacctca tctcccgttc taagtaaaac ttttgaaaat tgcattttat
     4021 tataagcact gacatcaagt ttatgatctt caccataact ttttacgata gcattagtca
     4081 cgataggttt agcacctgat actctagcta agtcagctaa agttttaata tcatttgaaa
     4141 gttcaaaacg aaaaggtctt tgcacatcac cgttaacaaa agcgtaattt tgaacatttc
     4201 ctactaaaat aacatctcca cttctaaaag gaaaaagatc catttgcccc tttagtaaaa
     4261 aatcatataa atcaatattt tttatcacgc tgttattacg caaaatttga atatctctaa
     4321 aacttccata ttctaaattt ataccccctg ctttatcaag atactggacc actgaatccg
     4381 aactaagtcc ttgataaagt cctggagcat taacgcttcc tgttacaaaa acactgacat
     4441 tttgataagc attcatatct gcataaacaa aaacattgct tttatagatt ttattaacac
     4501 gtgcttttat aacacttaca agggcgctat ttttcacacc tagtaaattt acagctccta
     4561 ctttagggat aaaaatattt ccttgagaat ccaccactaa aacttgcgaa aactcaacag
     4621 ctccccaaat tttaagactg atttgatcac caactgcgat cttataatct gggttataaa
     4681 ctctttgatt gtaattttta aaatttccat taaaaagatg agcgccaaat actaaaattt
     4741 gatgaatttt tgtaagatta ttttctttat ttgctatatc ataatttgag cttaaatttt
     4801 gatctatgct agttgtagta gaaccttgat cctctgctga aatgatttgt gaaacatcca
     4861 cagctccaaa acataaaata caactaaaaa gtaaaattaa tatttttttc attttaatac
     4921 ttatgctcct ctattatcat tttaataaat ttaacaatcc caaaaatcaa agataataca
     4981 ataaatgctg ttaaaatatc ataaattctt tcaggatatt ttgcgctttc tggaatatct
     5041 ggactttgaa tgatgacaag ttgttttatt tttcttaatg cttctattct agcactttca
     5101 taagctttta aagctgcttc ataagctttt tgcgcaaaag tagcttctat agttagatct
     5161 tgaaatttag cagccaaatc attaagcttt tgagaagaat tgttagctga aattttagat
     5221 ttttccctta aaagctgttt tttaatcgct tcaatttctg ctttaagtgc tactacttca
     5281 ggtgctgcat cattcatata gctttgtaaa gttaaaagtt tagcttcttt ttgagctaaa
     5341 ttagtctcaa tttgcgcaac caaacttgct ttagcttcag cttgtttcaa gggatcaaaa
     5401 accccatatt tattttgaaa agcaatcaaa ccattttgtg ctttttgata tcgttctttg
     5461 tatttttgta cttcattttc agcaaaagcc atttgttctc tagctgcttt atgagagatt
     5521 tcgttgataa acttttcgct ttcttgcata atagtttgag caatcaaatg agctgattta
     5581 ggtgtaaaac cttctacttc tacctgcaaa agcttagtag tttcatccgt atgcacctta
     5641 actcttgctt ggtaatattt aagataagat tctattgagc ttgaatccca aattttaaaa
     5701 ggcaaatcta tatgttgttc ttggtaaaga tctttaagtt tgattttctc atctaaaatt
     5761 cttaacatat cacttgattc tatataacct tttagataat ttaaatcttc gtttgctgta
     5821 gaagtgctac taagcaaaga caaaattcca cttgtttgag cactttctcc acttgttgat
     5881 ctaacatcta aaatcatcgt gcttacatat cttggtgctg caatcaatgt ataataaatc
     5941 acaacaaaaa tcattataaa ccaaacaatt ttaaaagaat caaatatgct taaatctttg
     6001 attttttcta ataaagtttt attttcttcc attaagcttt tccttgatat acagctattc
     6061 cttcatctac atcatcataa accgcaattt gtccattttt catataaatt attttatcac
     6121 accattcttt aatttcagct acatcatgag ataccataat cacttttgat ttgcttaatc
     6181 tttccctata taattttacg cttttttctc taaaagcagg atctccaaca gctccagctt
     6241 catcgattaa ataataatca aaatcaaagg ccatactaag tccaaaagct attctagcac
     6301 tcattcccga agaataagtc ttcataggct catcaaaaaa tttcccaagc tctgcaaaat
     6361 cttctacgaa ttttactttt tcttgaagtt cttgtccttt ataaccatat actctagcta
     6421 caaatttagc attatcccta gcagttaaag aaccttgaaa agctccattt aaacccaaag
     6481 gccaggataa ttttttatta gtaattatct taccactatc aggaagctct gccccgctta
     6541 aaagtctcat gagagtggac ttacctgcac cattaccccc catcaatcct atgctacaat
     6601 tttcaggaaa ttcaaaagta aaatttttaa aaacataatg tcttccaccg ctaaataaag
     6661 gataagattt agttagatta attagcttta tcattctttt tttgccgccg ttagagcttg
     6721 tctattatag tagtaaataa aaagtcctat aaataaaaca agtaaaatcc aaaatatagc
     6781 ataaaaataa ctatattcat cttgcaaagg ataattctca aaaaaattaa atcttaaaag
     6841 ctccattatg tgaagcaaag gattataata aaatatatca agtaaaggtc ttggcataag
     6901 ccaagtagga aatataatcc cggaactcca ataaaacact atgctaaaat aagctaataa
     6961 agttcttaaa ggctctacaa aatgccaaat aatagcaaaa caaatcccca aagcaaaagc
     7021 tgagcacata agtaaaaaaa tacaaaataa aactccgagt aaatgaacgg ggaatacatc
     7081 aaatctaaaa aaccatcctg caaaaaaaag cacagtgata aaaatcacaa aataaataca
     7141 aaattcaagc aaagttctag caataaatac atgtataggc tttacaggtt tataagcaaa
     7201 aagagccaaa tttgcctgag taccattcat aagctgagtt actatacttc taaacataaa
     7261 ataaggcata atacctgaaa ttaaaaacat aaaaatagaa attccttcag gcataacttg
     7321 atgatgatat tctcttataa tggtaacaat tactgtaata gcaagtgtta ttgacattgg
     7381 ttctccaact acccaaagat aacccaaatg cctattagca ccaaatctag tttttaactc
     7441 tctaaaaaat aaagcgtgaa ttacatttaa catttatttt ctatacctaa caatttacat
     7501 aaactataat cataactcat ttttttaaac aaaatcataa aaatttattt tttacaaaac
     7561 tcaagctttt tactaagtcc taaagcattg ttagtaaatt taagccaaaa aagctctaaa
     7621 gcataaattt ttgcactttt atcaagtata gcaaagggaa atttagaaaa ataaattttc
     7681 ttttgctcct tacttgccat tttaaactcg gccttagctt gcacaccttt taaaaaggct
     7741 attttacttt ctttggctat attaagtgct atacttgaat tttcactggc taatcttata
     7801 tgcttagtat cttcatggga agcgataata aaagctaaat tcttttcatc aaaagcataa
     7861 aaagcactag ccgtataaac acctttttca tcaatcatag cccaagataa aagctgctca
     7921 ttttttataa attctaaaat tctttcatcc atattataaa aattatacta aaatattttt
     7981 aaaaataacc gatttttgat ttaaactata aatataaggg gaagaaatgc aaattgatgc
     8041 tagtaaaaac caaagttttt cgatggatta tacaacaaaa agtggcaaac acttagcctt
     8101 atctatgtat gacaatcaaa gcataagtta tgcaaataat gaagaaggta aaactcttaa
     8161 tcttaagcgt cagtatggtt ttagctttac ttttgaaggc tctaaactca cacaaaatga
     8221 tcttgatgag attaaaaatg ctatgaaaga agttgaacct atgatcaaag attttttagc
     8281 aaattctaaa gttggagagt taaagccaaa ggaaattatc gaatcagcta tgcaaatggc
     8341 aaatgttcta ccaactccaa atgataaaaa ccatcaaaat gctattatga ataattttac
     8401 aaataaactc agtgatttgc taaaacaaaa tcaaacaaat gataaagata tcaatacttc
     8461 tatgcttgaa gatagcaaaa aacttcttga tgaagtttta gaacaaatga aaaaacaact
     8521 tgaaaaacaa caagaaaaag ccaaggaaaa tcaagataag acagatgata gtttaaatct
     8581 ttacgcttaa atcatataat attaaaaatt atcaaggagt tttaaatgac aaatatcgaa
     8641 attttagaaa atatgctcaa actccaacaa aaacttaacg acgaaacaaa cggcttaaat
     8701 tgggaaaatg gctacaccaa agaaggaaaa ctgatcagtt ggagacgctg tatttatatg
     8761 gaatgtgcag aacttataga ctcttttgca tggaaacatt ggaaaaacat ttcaaatccg
     8821 acaaattggg aaaatgtgcg tatagagatt gtcgatattt ggcattttat tttaagtctt
     8881 ttacttgaag agtatcgcga taaaaacaat aaagatttca aagctatagc cacagaagtt
     8941 aatgctgtaa gcgtgtttca agatttttgc aaagaagaag aataccctaa tgagggtgat
     9001 atttatggca ttttaaatga tatagagctt attatccata aatgcagtgg ttttggattt
     9061 aatcttggag aattactttc aacctatttt actctagcta ttaaatgtgg gctaaatctt
     9121 gaaattcttt ataagaccta cataggtaaa aatgttttaa atatttttag acaaaacaat
     9181 ggttacaaag atggtagcta taaaaaaact tggaatggca aagaagacaa tgaagtttta
     9241 gctcaaattt tagaacaaga gcttgatttt gatactattt ataaaaaact agaagaatgc
     9301 tacaaaaagg cataatttgg atattttaaa acttgcaatc aaagattttt taagtcttaa
     9361 atttttaaaa tttgccttaa ttcctttgat ttttagcctt atactgatgc tttttttagg
     9421 agtacttggc ttttcggcct tgcttgatta ttttaattct ttatttagcg ttggagaaga
     9481 ttcgttttgg gcgtggtttt atgctcttca ttttgtacaa attttaatca ccatcataag
     9541 ttttttattt tcaggtttta ttgttgtttt tgcttcggtt tttttagccc tttttatcac
     9601 ttcttttctt actcctttta tcgctaaaga aatcaaccaa aaatattacc attatgataa
     9661 tacaaacgaa gtttcaacct taaaaactat ctttgaaatt tttaaaatat ttataaaatt
     9721 tatagggatt ttattgcttt gcaccttggc tttattttta ccttttataa atatttttgt
     9781 atattatctt gctttttatt atctctttca caaactttta atgattgatg ttacaagcac
     9841 gattttagac aaagaaagtt ttaaaaattt tcattctgat ttttcgcctt tagagtttaa
     9901 atttagcact ctttgttttt atctactctc atcagtacca cttttaggac tttttttgca
     9961 agtatttttt gtgatttttc tcacacattt aagctatcaa agaattttaa aactaaaagc
    10021 taaggcttga aatatcgatt ttgtgattgt ataaataagc tcttaaaagt cttggaattt
    10081 tagctattct acactcttct ttgaaatttt taggtaattt ttgacaagtt tcatactcaa
    10141 aaacaatagc ttgttcgttt ttatatgcaa gtgctatttt accacctaaa acacaatcac
    10201 cctttaaaag ctcttttctt tgtgccgtgc ttaaaagcaa acctttcatt ttcaccgctc
    10261 tagcaatcaa gctttcattt ttagggcaaa taagaagtcc ttgaatttct ttgatatttt
    10321 caaaatcata aagttttttc ctgtcttcat caagataaga aaaacttctt tttaaaccct
    10381 gatgaaattc actcacaaag gcattagaga aattttttct tatataattt ctaaaatatt
    10441 tttcattttc attactttca tcatggaaat aaaaaatatc tttttctttt aaaaaagatg
    10501 aaatttcatc tttacttata aagagtaaag ggcgtaaaag tgtataattt gagcgttttt
    10561 cacattcttg catacctaaa atttcagcca aacctgcgcc tcgtgaaagt tgcatcaaaa
    10621 accattcaaa ttgatcgttt aaatgatggg ctaagataag atgatcataa ccttgctcaa
    10681 gacaaatttt ttcaaaaaaa tcatagcgaa aatctctggc ttttttttca aagttacttt
    10741 gaaatttagg agcgtgtttt atgaaaattt ttttatgaaa ttttaaagca agttctttgg
    10801 cttttaactc ttctaaatca ctattttttc tagttttgta atttatcatc acaagatcaa
    10861 agtcgatctt ttcttgcatt aaaagataaa aaagcacact agaatcactt ccataagaaa
    10921 aagcgagtaa atttttaccc ctttttaaaa gggctaaaat ttcatcttta atttgcatct
    10981 acttttctta aagccttagc aaggagtttt ttatcaaggt tttgtaaaat ttcacattca
    11041 taaatttgcc ccatttccaa atttccacat tcgctttcat taataagaat ttccccatca
    11101 atctctctat cccatcttaa atctttagct gcgataaaaa actctccctc actactttct
    11161 cctgtgcaaa ctactaaacg cttttgccct acttcttttt caaaactttt ttctatcact
    11221 tcatcaacaa ttttttctat gattttaagc cttttattga tcactttaaa aggcacttgc
    11281 tccatatcaa aagcggctgt atcttcttcc ttagaatacg caaaaacact caccctatca
    11341 aaaccaaagt ctttaacaaa ctcacaaagc tcttcaaaat ctgcctcact ttcacctgga
    11401 tgccctacga taaagcccgt gcgtaaaaag ctatttggcg cacttttcat taaatttagc
    11461 atttctttaa gtcttgtgct atttgcccca cgcttcatga ttttaagcat attatcactt
    11521 atgtgctgca aaggcatatc aaaataattt acaaaaattt cagaagctat aatgcgttta
    11581 atcaaagctt cactcgcact cgtaggataa agatataaaa ttctagccgc tcttatgcct
    11641 ttgatttttt ccacctcatc gattaagcgt ataagcccat ctttttcacc cttatcaaac
    11701 aaataagaac tcgtatcttg tgcaataaaa gaaaagtcct tataacctct agctaccaaa
    11761 tctttaagct cagctataat gctacttatc tcacgagatt ttaacttgcc tttaaaactt
    11821 gggatggcac aaaaagagca tttttgatta caaccttcgg cgatttttat aaaagcatgg
    11881 gaatttgaac ctgtgataat acgtttggaa ttttcactct gcaaataagt cgaatttgaa
    11941 aataaatttg tttttttaag tatcatttca tcgattcttt cataatcacc cacacctgtg
    12001 aaaagatcaa cctcaggaag ttctttcata agttcttcgc ggtaacgctg catcaaacaa
    12061 cccgtaacca ccaaaagaga atcttttttt ctttgttcgt gcaaatccaa aatcgcatta
    12121 atactttctt tttttgcact atcgataaaa ccacaagtat ttacgattat aacatcagct
    12181 ttgcttggtt catcgcaaag ttcataagca ctaaggcgcc ctagcatgat ctcactatcg
    12241 actaaatttt tattacaacc taaagacata agataaagtt ttgacatttt tttcctatat
    12301 taaagttttc ttttgatata atttttgact ttaaaaatat aattatagca aagaaatttt
    12361 atggataatt acgaatttag cgaactttta aaaactttaa aaaacaaagt cggcaacata
    12421 gcctccatca tcaagcctga aaatatccaa acaaggctta aagaaatcga agagcttgaa
    12481 aattctcctt ctttttggag tgatgttaaa caagcaggaa tcataggtaa agaaaaaact
    12541 aaaatcacca atctacttaa aaactatgaa aatgctttta atgctctaaa tgacgcaagc
    12601 gaacttttcg atctggccaa tagcgaaaac gatacagaaa cacttgaagc tttatttaat
    12661 gacgcaccaa aacttgaaga taccatcaca agtcttgaaa tttccatgct tttaagcggg
    12721 gaaaatgatg gtaaaaatgc cattgtttcc attcacccag gtgcaggtgg aacggaaagt
    12781 aatgactggg caagcatact ttatagaatg tatttaagat tttgtgaaag agaaggtttt
    12841 aaagtcgaaa ctttagactt tcaagaaggc gaagaagcag gacttaaaga tgtgagcttt
    12901 ttagttaaag gagaaaatgc ttatggttat ttaaaagctg aaaatggtat ccatcgtttg
    12961 gtaagaactt ctccttttga tagtgcagga cgccgtcata caagcttttc aagtgttatg
    13021 gtaagccctg aacttgatga tgatatagaa attgaaatcg aagaaaaaga cataagaata
    13081 gattattaca gagcaagcgg tgcaggcgga caacatgtca ataaaacaga atcagctgtg
    13141 agaatcacac attttccaac cggcatagtc gtacaatgcc aaaatgacag aagtcagcac
    13201 aaaaacaaag ccaccgcttt taaaatgcta aaatctcgcc tttatgaact tgaactcatg
    13261 aaacaacaag atagtgctaa tactggagaa aaaagcgaga taggttgggg gcatcaaatc
    13321 cgttcttatg tgcttttccc ttatcagcaa gtcaaagaca atcgcagcgg agaagctttt
    13381 tctcaagtgg ataatatcct tgatggggat atcaaaaaaa tgatagaagg cgttttaatt
    13441 gccttaaaag cggagtaaca gcttaaaaat aagtaatttc tgcaaaatgt cggtataaaa
    13501 agaattagaa agatagcggg attttcccgc ttgttttatt atcttgcata aaacctaaga
    13561 gcatcattca cagaacaata aactcttttc ttaaaatctt tatcgcaata aacactcaca
    13621 actttatagt ctttttatcg tttggattta ataagaaaac atagtttgag tatggagttt
    13681 tatctatttc taaatcacgc ttcatttctt taattttgcc ttctggattg ttaatatcac
    13741 taattgttct gactgaagta taatcataaa gtttatgatt tggatatttt ttcataatct
    13801 cttgattacc taaatcaaac atagcttgat cgttgccatt gtttttttac tcgactaaat
    13861 cgccatcgcc acaacctata atcaaagtca tagctcctaa agccaaagca cttgttaaaa
    13921 tctttttcat tatttttgct cctagtttta aaattaaatt aatataacta tacctaaatt
    13981 taaaatttaa atatcatttt tgcaataaat tctaaagtaa aaatcacgta aaaatttaac
    14041 tcataattat ttcactcaaa caaattttta tgcaaaattt cttctaaaac cacagtagca
    14101 taagagcctt tttgcaagaa aaactctata caaaaatgag ctttttcttc atcataacgc
    14161 cattttaact cttctaaata tccccacata aagcgtcttg aaccttgcat tttagcctta
    14221 aactccaaag tatctttaaa aatttcattt tctaaattta aggccaaacc ttctcctgtt
    14281 tcataagcct tagcaccgat taaaagcccc atggcgctta catctcttgc cttaaaacgc
    14341 ccaagctcag cacttaaatc ctcgcataaa aaacactttc caaaaggata atgccctaaa
    14401 acctcacctt ttaaaagctt aaaaaattgt tcttgttttt taagttcctt agcttcttct
    14461 ttagaaattt tataaatttg gatcaattct ttttcgctaa aatcatttgc aaaatgtgat
    14521 aactccactc ttttactcaa atagcgatta aaaagctcac tttgaaaagc tgaaattaaa
    14581 aactctttca tttttacatt tttcattttt ttgccacgca aaatttcaag cccttcttta
    14641 taattatccc caaattttcc aaaacgctga taaccaaaat aattcgtaaa accttgctta
    14701 tccaaattca tcaaagcttg ttctagtttt aaagcatcgc ttggtaaaac tttttttaag
    14761 cgtatgaaaa aagtatttcc ttttaaatgc cctattctta gcttgttttc atggataaaa
    14821 atttctaaaa ttttaagttt aggatgagaa aaatttgaca aaaaactctc aaatttttta
    14881 ggcatagaaa ggtattgaaa ggttgatcct tgcttatctt taagccctgc ataaccaaaa
    14941 tctcttattt taaccccgct tgtttcactt aaaattttta aagcttcatt tgtggttaaa
    15001 tcttttttat tgatatgcaa aataagatgt tcacccttac cgctaaattc atacaaaggc
    15061 ctttcacgca ctacaaaatc atcgctattt ttactaaaat acgcattaat aggactgtgt
    15121 tttaaactat acaaaggctt aaaaatggtg ttctcttcct ctaaattcat attttccttt
    15181 cactgctttt ccaaagatat ttaatttcac gccgtatttt ttggctattg tttttatatt
    15241 ttgacgctct ttttcatcaa aagcaaacaa aatttcatat tcttctccgc tataaagcgt
    15301 ataatcatca agttttttaa accaagaaat accgcattta tttaaggcta gaagtcttga
    15361 taaatccttg cttaaaccat ctgaaatatc catagcacaa gaaattaaag gtgcgatttc
    15421 ataaaaaaaa ctagctctta attttggctt tataaataca tggtttggtt ttaaagtgcc
    15481 cccattttgt aaaatttcaa gcccttttaa acttcgtcct aattttcccg tataagcaag
    15541 taaatgcccc ttttttaaac cttttctaaa aacagcttta tcgttaatct ttgaaatgat
    15601 agtaagacta atgtctattt tatcattgct tatagtatca ccgcctatga tttttatatt
    15661 aaatttccta gctgttttta aaaaaccttt ttgcaaggct ttgatctcat tttcgcttaa
    15721 attttttggt aaagcaagtc ctaaaagtgc gtattttggt acagcattca ttgaaatagc
    15781 atctgagata ttaacaagca ttgcttttgt agcaatttgc tctaagctaa accactctct
    15841 tttaaaatgc acattttcaa aaaacaaatc cttactaaaa caccaatcat caataatagc
    15901 tccatcatcg ccattttttt catttaaaaa agctttgata ataaaatctt ctttgttcat
    15961 aatgcgtgat tttataaaat ttccttttaa attctagtga attttagaaa aattttatat
    16021 aatatagaaa tatttaagga aaaaccatga aaaaattaga attaagaatt tttagatttg
    16081 ataaaacca
//
LOCUS       DARGEM010000025        15905 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.025, whole genome shotgun sequence.
ACCESSION   DARGEM010000025 DARGEM010000000
VERSION     DARGEM010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15905
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.025"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..249)
                     /locus_tag="SFZ78_000637"
     CDS             complement(<1..249)
                     /locus_tag="SFZ78_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8211534.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMT"
     gene            complement(246..890)
                     /locus_tag="SFZ78_000638"
     CDS             complement(246..890)
                     /locus_tag="SFZ78_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211535.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(967..2763)
                     /gene="lepA"
                     /locus_tag="SFZ78_000639"
     CDS             complement(967..2763)
                     /gene="lepA"
                     /locus_tag="SFZ78_000639"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG8211536.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            2890..4164
                     /gene="cmeD"
                     /locus_tag="SFZ78_000640"
     CDS             2890..4164
                     /gene="cmeD"
                     /locus_tag="SFZ78_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG8211537.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            4161..4901
                     /gene="cmeE"
                     /locus_tag="SFZ78_000641"
     CDS             4161..4901
                     /gene="cmeE"
                     /locus_tag="SFZ78_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG8211538.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            4904..7921
                     /gene="cmeF"
                     /locus_tag="SFZ78_000642"
     CDS             4904..7921
                     /gene="cmeF"
                     /locus_tag="SFZ78_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8211539.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKITKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNTNATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(7945..8751)
                     /locus_tag="SFZ78_000643"
     CDS             complement(7945..8751)
                     /locus_tag="SFZ78_000643"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8211540.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(8752..9471)
                     /locus_tag="SFZ78_000644"
     CDS             complement(8752..9471)
                     /locus_tag="SFZ78_000644"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG8211541.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(9471..9722)
                     /locus_tag="SFZ78_000645"
     CDS             complement(9471..9722)
                     /locus_tag="SFZ78_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211542.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(9726..11171)
                     /locus_tag="SFZ78_000646"
     CDS             complement(9726..11171)
                     /locus_tag="SFZ78_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG8211543.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            11311..12474
                     /gene="ftsW"
                     /locus_tag="SFZ78_000647"
     CDS             11311..12474
                     /gene="ftsW"
                     /locus_tag="SFZ78_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG8211544.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            12471..13499
                     /gene="murG"
                     /locus_tag="SFZ78_000648"
     CDS             12471..13499
                     /gene="murG"
                     /locus_tag="SFZ78_000648"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG8211545.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCKEIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(13470..14633)
                     /locus_tag="SFZ78_000649"
     CDS             complement(13470..14633)
                     /locus_tag="SFZ78_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEG8211546.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGGISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIIGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(14641..15492)
                     /locus_tag="SFZ78_000650"
     CDS             complement(14641..15492)
                     /locus_tag="SFZ78_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211547.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYNLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(15555..>15905)
                     /locus_tag="SFZ78_000651"
     CDS             complement(15555..>15905)
                     /locus_tag="SFZ78_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8211548.1"
                     /translation="SGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFK
                     KCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPK
                     QYQKTKNLYFLSKN"
BASE COUNT         5614 a         2620 c         2157 g         5514 t
ORIGIN      
        1 tgtcattcta ggatcaaaaa aatctttaaa ttttgcaaaa cttaatttag caagcatttt
       61 ataaacaaaa taaccataaa aataatgttt agagtgaagc aagtgttgta tttcatggta
      121 tttataaaaa gaatagactt tgaaattatt atcaagcttt cttacattta aggaaaattc
      181 agaaagctct agctcgcata attcacaaaa gcagagcaga gcaaaagctc cgcaatttat
      241 acacctcaaa gttcagagat taaactagct gctttatttg ccatttgttt tattaacaaa
      301 tgagtataaa aagttgtttc ttttaaatca tcaaaacctt gtacatcttg cttggtgcgg
      361 attgtaaatt tcttattttt atttatatca ctaacttgta aaactcctac tagttttgaa
      421 tgtaatccta tagcatcttg agttgctcca taagatataa attctaaatc aatcttactc
      481 acataaggtg aattttgatc gttattgtca agcacaacta ttcctctagc ttcaagttct
      541 tgttttaaat aagtataaaa taccgcatta aaattcacat caacaaataa ctttttccct
      601 ttagcattta aaaccttttg cccttctttt aaatcataaa atctatgtaa ataaaccttt
      661 ttcaaagcaa taccagtgtc taaagtgcgt ttattggcac aacattgaat tccaacatcg
      721 ctaatgtata aaagcccttt aatctttgct tcaaaaccac caggactttc acaagaactg
      781 cattgagaat ttttagaaat ttgattaact tgagcaaaag tatcttgttt agttgcacaa
      841 gcactcaaaa ataaaatagg cactataaaa atcaaaaatt ttttaaacat tttttctcct
      901 tagaaaatta ttttaaaatt gtattaaaaa tacaagcaaa tttcaagcca agttttaaat
      961 ttatcatcaa tctatcttta aaacactcaa aaaagcctct tgaggtaaat ttaccttacc
     1021 tatagctttc attctttttt taccttcttt ttgcttttct aaaagctttc tttttctagt
     1081 aatatcccca ccataacatt ttgctgtcac atttttaccc atggatttaa cagtttctct
     1141 tgcgatgatt ttatttccaa tacttgcttg aatggccact tcaaaaagct gtctaggaac
     1201 tatttctttc atagcactaa caagttctct tcctttactt tgcgcttttt cattaggcac
     1261 gataatgctt agcgcatcaa cattttcacc cgctacctta atatcaagtt ttaccaaatc
     1321 ccctactcta aattctatag gctcataatc aaaactcgca taaccttttg ttaaggactt
     1381 taatttatca taaaaatcca tcacaatctc atttaaaggc acatcatatt ctagcaaaac
     1441 acgctcaggt gtgatatagt ccattttaac ctgtactcct cttttgcgat ttaaaagagt
     1501 gattaaattc cctaaaaatt cacttggagt aatgatagta gctttaacat aaggctcttt
     1561 tatatgatcg attttattaa caggaggaag ctcgctagga ttttgaattt taataagctc
     1621 tccatcggtt tgataaattt cgtaagtcac agttggagct gtagcaatca aatcaagatt
     1681 aaattctctc tcaagccttt ctttgataac ttccatatgt aaaagcccta aaaatcctac
     1741 cctaaaacca aagcctaagg ccaaagaagt ttcaggctca taagtaatag aactatcatt
     1801 aagctttaat ttatccaaag catctcttaa atcttcaaat ttatccgttt ctataggata
     1861 aagtcccgca aacacaaaag ctttagcctt ttcaaaacca cctatggctt ctttagcttt
     1921 gttttttacc aaagtgatgg tatcgcctac ttgtacatca cctacggttt taagccctaa
     1981 aaccaccaca cctacttcgc ctgattgtaa agattgagtt ttaattggac ttaaagggtg
     2041 gggataaaaa agatcttgaa ctatatgttt tttatccgta ctcatgacta aaacttcatc
     2101 gtttttagca atacttcctt cataaatcct aaccaaagcc aaagcaccca aataattatc
     2161 aaaccaagaa tcataaatta aagccttagt aggagcttca tcatctgttt ttggtgcagg
     2221 gattttagta ataattgttt ctataagctc ttttataccc actcctgttt ttgcactcac
     2281 gcaaattgca tctttgcaat ctatacctat aatatgctcg atttcatgct ttactttctc
     2341 aacatcagca ttaggtaaat cgattttatt aatcacagga atgatttcaa gattattttc
     2401 aagcgctata taaacattag ctatagtctg tgcttcaaca ccttgagaag catctactac
     2461 aagcaaagcc ccttcacaac ttgccaaaga acgactcact tcataagaaa aatccacatg
     2521 gccaggagta tcaataagat ttaaaacaaa attttcatta ttaaatttat aatttaaacg
     2581 cactgattgt gcttttatgg tgataccacg ctctttttct atatccatag tatccataac
     2641 ttgtgaactc atctgcctat cgctaatagc accacactca ctaataatcc tatctgcaag
     2701 agtagatttt ccatgatcta tatgagctat aatagaaaaa tttctaatat tttttaccga
     2761 caaaatttca tcctaaatat aaaattttaa agctaggatt ttaacaaaat ttatgtttaa
     2821 aacaaataaa ttttatttta tataaaaaac ttcaattgaa atttatataa aacatattaa
     2881 aatatcaaaa tgtttgaaaa atatttaaaa tcagctatat ttttagctct ttatccctta
     2941 gcaatgttag cttctaattt gcacgaattt atagcactaa gtcaaaataa tgaatcctat
     3001 ctcattaagc aaatgcaaag cgaacaagca aatttagaca aagaacaagc ttttagaaat
     3061 tacctaccct ctcttagtct aaactcagct tatgtagcca acaataaaga tcgcttcatt
     3121 atcgatccac aagaaagttt atttgctaaa gtttctctta attttttgct ttttgatggg
     3181 ggtgctagag aggctaattt aagagcttta gaaagcagag aaaaattaag ccttttagac
     3241 aaagaacaaa ataaaaatta ccttgcccta aatgcaatca cactttattt taacacctta
     3301 agtcttgaaa aaattttact agccaatcaa caaaaagtat cttttttaaa atcaactttt
     3361 gaaagattgc aaaaatttta cgacgcagga cttagcccta aagatgaact tgaaagcatt
     3421 aaggctaaat accatttaag cttattagag ctcagtcaaa atgaattaaa acttgccaat
     3481 atacaaaaag agattaaaat tttaagcgat acagatttta aagtgcaagg gaatgctttt
     3541 ttagaaaatc cgcaacaaga aaaaagtcaa aactatgaag taatgatagc taaagaacaa
     3601 atcaatcttg ctaaagaaag tgtaaattta gcaaaagctg aatattttcc aaaattttat
     3661 attcaagata attttaactt ttataaaaat aattataatc caaaagttcc agctcctttt
     3721 gcaaatttag cggatcaatt cttagaaaaa tattctcaag gtaatcaatt tattttaggt
     3781 atggaatgga aaatttttga tttcaatgca agggctaaag aagttgaaaa agagcgttta
     3841 aatgttcaaa tagccaatgc aaatgcaaga tttagcgaga gaaaaaataa agaagaatta
     3901 aattatttag acaaaagttt aaaagtttta caagaacaaa ttttagctct taatcttagc
     3961 ttaaatgctg caaatttagc ttttgaaagt gtagataaaa aataccaagc aggacttgtt
     4021 tcttatgtag aatatcttca agctttagag gctaaattta aagcacaaag cgatttagag
     4081 cttgctaaaa atgaatttga aattactaaa gcaaattatt attttaatgc gggtatagat
     4141 cttaattcaa aggttaaaga atgaaaaaaa ttctattttt acttcttgtt tttaattgcg
     4201 cctttggcga agaaatttac gcaagtttca atgtagaagc atcaaaacaa agcaaacttg
     4261 cccttgaaag cataggtttg gttcaaaaaa ttcctgtaga aattggacaa aaagtcagca
     4321 aaggagaact tttacttgct cttgatcaag aaagtgaaaa aatagctctt caaaatgctc
     4381 aaaattctta tcaacttgcc cttgtagaat acgaaaatac caaaagtagg atgcaaaaaa
     4441 tcaaagctgt agaaaatgtt atagacaaac aaagctatga agatatgaaa gctaagtttg
     4501 atgctgctaa tttaaattta aacaaagcaa aaatcaatat agcttattat aaaaatatca
     4561 tggcaaaaaa agaattacgc gcaccttatg atgctattat cgcaaacaaa tttatacaag
     4621 tgggcgaagg agtaggagga gtagctcaac ctttaataga aattttttcc tatccacaaa
     4681 gcaaactgat tttaagtttt gatgaaaaat ataaagataa agttagatta ggcgatgatt
     4741 tcttttataa aatcgatcaa aatggtacag aattgaaagg aaaaatcagc cttatttatc
     4801 caagtataga agtaaaaaca agaaaaattt atgctgaagt gcaaaccaca aatctaacac
     4861 cagggctttt tggtgaaggt agaatcatca ctaaagatta aaaatgttta aactagctat
     4921 aaaccgacct attaccgtgc taatgttttt cttagctctt atgatttttg ggctaatctc
     4981 tgcttttagc atgagtgtaa atttatttcc taatgtttcc atacctctta taaaaatcac
     5041 aagcaagata aatggggatt taaatttcgt agaatcaaaa atcactaaag aaatagaaaa
     5101 tgctttaagt gaaatcgatg gagtaaagac cataacctca gctgcatatg ataattttag
     5161 tgtaagtgta gtcgagttta aactgggtaa aaatcttgaa gtagctgcca atgatgtgcg
     5221 tgataaaata ggaactttaa gcctaccttc taagcctgaa attgaaaaaa tcagttcaga
     5281 ttctggttct gctatttcac tttttctata ttctaaagat aaattacaac tcatgcgtga
     5341 aatcaatgac aaaataaaac cttttttgca aagagttgaa ggagtaggta aaatcgaagc
     5401 taaggggttt ttagaacccc aaattcgcat agaattaaaa ccaaacgaac ttagaaaata
     5461 caatcttaac gcccttgatg tagcaaatat catcaaaagt caaaatttta aacaagccct
     5521 aggcgaactt aacaacaatc aagataacta tatcatcaaa ggctattttg aagccacaaa
     5581 tttagaagaa cttagcaatc ttcgcataaa aacaggagta tttttaagtg atattgctaa
     5641 tatttcaagc ctttatgaag atgaaaaaca aagtgcttta tacgaaggta aagaaggggt
     5701 gcttttagaa ctcggaaaaa tcacaaatta taacaccctt gaaatgatta aaaatgtcaa
     5761 aaatgccttg cctattttag aaaaacaaat tccaaaagat ataagcatta atatgcttta
     5821 tgataaaagc ttaaatatcc acaagcacct ttctcaagtg atttttgata tggttttggg
     5881 gatttttcta acccttgtta tcgtgttttt atttttaaga aatttaagtg caactctcat
     5941 tgcttgcata gctataccta cttctatcat ttcaactttt tttattatcg atcttttagg
     6001 ctatgattta aaccgcttaa cttttatagc tttaacctta agcataggaa tttttatcga
     6061 tgatgctata gtagtgattg aaaatattgc taaaaaacta aaaacttatc cgcctttaca
     6121 agctgctttt ttgggtatca atgaaatagg ttttagcgtt ttaagcataa gtatagtttt
     6181 actttgtgtt tttatcccta tttcttatat gaactctata tcagggcttt ttttcaatgc
     6241 cttaggcata agcgttgcaa gtgggatagt tataagcttt ttggtttctg tatttttaat
     6301 acctagtatt ggggcaagat ttttaaatcc aaaagaaaac aagttttatg aaaaaacaga
     6361 agcttttttt gaaaaaatag agcaaaagta tgaaaattta ctctataaaa ttttacaaaa
     6421 taaagtaaaa tttatcctag ccactcttgt ttttataggg ctttcttttg ctttagccac
     6481 tcgcataggg cttgattttt tacctatgga agatgatagt gaaattcaag ttttgcttga
     6541 aagcaaaaag gatttaagtt tagaagccat gaaagaaaaa agtttaaatt tgcttgaaaa
     6601 aatcaaaaat gatagcaatg tcaaatacgc ttttttactt gtaggctatg atgatgccaa
     6661 agatgctaca aaggctaaaa tttatgttaa acttaaaaat ttagacgaaa gaaatttaag
     6721 acaaagtgcc atagtaagtt tatatcgtca aaaatttcaa gatgaaagtt taaaaatcaa
     6781 aattttagaa cttccaaaga tagagggtgc aggcattgat gatcccgtgc aatttttaat
     6841 cttaggagat gatttaaaca ctctaaaaga agctgcttct caggcaaaag aaattttagg
     6901 cactaatgca cgcattgtag atataagtga taatactaat gctacaaaag atgaagtagc
     6961 cttacacatc aacaaagaaa aagccaaact tttagatgtc aatcctcaat atatcgctgg
     7021 ggttttaggg tattctttct cgcaacttag cgtaggaagc atggatagag gcaattcaaa
     7081 agatgatatt atcctaagtt ttgctccaga atttaaaaaa gacatagaag ctttaaagcg
     7141 cattagcatt aaaaacaacc aaggtataaa tttagaactt tcaagcgtgg tggattttat
     7201 atacagtaaa gatttaaaaa ctatcaatcg ttacaataaa aaccgctctg tgaaaatcac
     7261 agctggagtg aatgatcttt ccttaggagc ggtgcaaaaa cttttactag ataatatgga
     7321 taaaatttta aataacaatc caagtcttag ctatgctttt tcaggcttta tcaatctttt
     7381 aggtgaaacc gtgcaaggtt ttgctatggc agtagcactt gcttttgttt taatttatct
     7441 tgttttagcc gcactttatg aaagttttat tctgccttta atcatcatga taaccatgcc
     7501 tttagccttt ggcggagctt ctatagggct ttttatcaca gggcataatt tttcactttt
     7561 tgtacttatt gccatcatct tactttttgg tatggtgggg aaaaatgcta ttttactcgt
     7621 agatgtagct aataaaaaat gccatgaagg tttagatccc gataaagctc ttttaatcgc
     7681 tggaaaatcg cgcttaaggg ctatattgat gacaactttt gctatgattt ttgctatgct
     7741 cccacttgct ctttcaaggg gtgcgggcta tgaagctaat tctcctatgg caatagccat
     7801 tatctttgga cttataagtt cgactttgct taccttactc gtagtacctg cactttttaa
     7861 attttgtttt aaactagata gcaaattaag aaaaatttat gagagagaaa aattaaatta
     7921 accaaaatga ttaatttaat ttttttaagt attattctta taaagtgctt ttaagttatc
     7981 ataggcgatt tgtatttttt caaactgttc tcttgcgtaa gctttttcta ttgcactttt
     8041 tccttgatga aaatcaggat gataaagttt taccaaaatc aaatattttt gtctgatttc
     8101 actaagatca ttttgcggag tgcattctaa agtattaaaa taattactaa aaagcttagc
     8161 taaagcatta aatttccatt tcatattttc tttattgtga atattttggc gaaatttttt
     8221 atactcttcg cggtcaactt caaaattcac gcaatatttt aaatgctcgc tctcatctgc
     8281 aaaagcttca aaaagttcaa gggtattctc gtttttatat tctaaaatta gaatatttgt
     8341 catttcatta tattctatat tatgatcttg aaaataattt cttatataag taataaataa
     8401 tttttcatta gagcttaact tcatcaaaat tctacccgca acaaaatcaa tcttgataaa
     8461 caacataggc ttaagcatat tattttgctc aaaaattaat ctaaaagttt taaaatgagc
     8521 atcttgtaaa ttctctatac cttcatttgt gcttttacga tatttttgat ctaaaacttt
     8581 taagaaataa cggcgctgtg gaatttcatt ttcttcaaaa aaagaaaaaa ttttattttt
     8641 tcgtcctatg acctttgtga aatttttggt aatcaagtct ttaaaatact gaaatacgct
     8701 aatatcatct gtattaacat tgatagtttc taaagtttgc acgatttgca tctatttctc
     8761 ccataaaacc tcattttcaa aaagctcttt agtgcctttt aaaatttcat tgggtgtata
     8821 atcggcttta taagataaag attgacactt ttttacaaaa tacccaagat aaatataatc
     8881 taagttcatt tttttagcta tttgtatttc attgagcaaa gaaaatttac ccaaagaaaa
     8941 atacgaaaaa tcaggatcat aaaaacaata aatgcttgaa attccatcct ctaaaatatc
     9001 aatcaaatca acacaaacga gcttatcttc tatataaaat gcaagctcat atccaaaatt
     9061 cataaaacca tcgacataaa gattataata ctgtttaaag cttaaatcat aacgcttcca
     9121 gttctttttt tcttccataa aacgatggta tttatcatat aaaaacaaat gttcattgct
     9181 taaattgggt gttctaagta taactttggt gttaatattt ttatttacaa cccttctttc
     9241 acttcttgaa aaattatatt cattaactaa aattctaaga cttaaacatt catcacaatc
     9301 tttacaaata gggcgtgaaa aatacctacc aaaacgacgc caacctcgtt ttattagctc
     9361 attattgatt tctttagggc aattttcaat gtatttatac tctattcttg aacgtttatc
     9421 ctttaagtaa ggacactgat cttcaagagt acaaaaacca atctcaagca ttaaattttc
     9481 ttaatatctg tatttttgat aaattcggaa aattcatcct gtagtttttc ttgctttaag
     9541 aaaatttctt gcatttcctt atctatgttt gtttcttgat ttttttcgcg aatatcttta
     9601 gctagttttt ctaaattttt tacacttgca ccactcttgc ttgatttctt cgctaatttt
     9661 gaagtattgg tgttagcttg catttctttt ttaatacttt taagactgtc taaaaaatcc
     9721 atctattatt ccctactttc tcgtattttt ttaagcgtag cagctattgc agctataact
     9781 tcttctttat tttcttgatg acgatcttct gttttttcta ataattcttg catatgtgtt
     9841 tctatgaaag aggtgtctaa ataccccctt ctaaattctc ttgtttttgt aatggcaatt
     9901 aaaaatggta ttgttgttct aatatcatca atcacaaatt ctttcaaagc acgctcaagt
     9961 ttattaaccg ctaaatcata acttgttgct ttaataataa gctttgcaag catggaatca
    10021 taataaggcg gcacagtata gtctttataa atatgactat caaccctaac agatggtcca
    10081 agagctgggt agtattctcc tatttttcca ggacttggaa taaaattttt ccatacattt
    10141 tcagcagtaa ttctagcttc aatagcaaaa cccctaggtt taatatcgct ttgttctaag
    10201 tccaaaattt ctcctgctgc aatacgaatt tgtcttacaa taagatcaat acctgtaatt
    10261 tcttcagtaa ttggatgctc aacttgaatt cttgtattca tttccataaa ataaaagcga
    10321 ttataatcat caagcaaaaa ctctatagtt ccagcatttg tataacctac agccttagca
    10381 gctgccacag ctgtaacacc catagttttt ctaagattat ctgaaattcc aggacaaggt
    10441 gctatctcaa ttaccttttg atgtcttctt tgaatagaac aatccctttc acaaagatgg
    10501 ataatatttc cgtagttatc tcctaaaatt tgaaattcta tatgtctggg attaactaca
    10561 tatttttcca taaatacttc atcattatta aagtatgtta aagcttctct tttgcaagat
    10621 tcaaaggcat tttcaagatc ttgttcttta tgaacaacgc gaattccgcg tccacctcca
    10681 ccacctgaag cttttaaaat aacaggataa ccaatcttct cagcaaaaat tttaatttct
    10741 tccatgctat aggaatttaa tttttcagtc cctggaacaa taggtatgcc atttttagcc
    10801 attaacttac gagcgatatt tttatttccc atcttatgga ttacttcaga ttttggacct
    10861 ataaaaataa ttccagcatc ttcacaagcc ttagcaaatt cgtaattctc acttaaaaat
    10921 ccataaccag gatgaatcgc atcagcacca caagccttag caatctcgac aatacgagca
    10981 acatctaaat atcctcttat agcatccgtt cctatacgat atgcctcatc tgcgattttt
    11041 acatgcaaac attcacgatc aggctctgta aaaactgcaa cacttttaat atgtaaatct
    11101 ctacaagcac ggattactct aacagctatt tcagctctat ttgctatgag aattttatgg
    11161 atttgattca taatttgcct tttttgttat atttttattg ttaattttag caaattttcc
    11221 ttacaaaaac ttagcaaaaa atttaattta ttttagttat aataaaactt tttaaaattt
    11281 taattccaat aaagaaaagt tataattata atggttgctg ataaaagatt attttattta
    11341 agttgtattt taatcaccat aggaatagta ttttcatact ctcttacagc ttttactgtt
    11401 ctttttcttg actatagcga gtttcatttt tttattcgtc agcttttttt tggaattagt
    11461 ggcatactta taatgttttt tatttctcga ttggatcctg ataaagcact ttctaaaaaa
    11521 attattttag ctattttgat tatttctttt atctttatca tcattttgcc atttttacct
    11581 tctgcattag caacagctag cggaggagct aaacgctgga tacgcttagg cccactctct
    11641 atctctcctg tggaattttt taaaatagga ttgatttatt ttttagcatg gagctataca
    11701 aggcgtattg atgatagtaa aaaagctatc agacacgagg ctttaattct tctgccttat
    11761 tgtatcttag cttctatagt tataggatat atttatatca ctcaaaacga tttaggacaa
    11821 agtgtaattt ctttcttttt gattctagct ttagcttttt ttgcaggagc tagtaaaaga
    11881 ctttttgctt ttggaacttt aatcattatg atgataggta taatggtaat ttttagtaac
    11941 caaagaagaa ttcaaagaat cgcttcttgg tgggggaata tacaagatgc ttttttacct
    12001 atgcttcctg attggctggc aaatgcttta agagtaagta gcaacagcga gccttatcaa
    12061 atttcacact ctttaaatgc tatagcccat ggaggaatgt ttggcgaagg cctaggactt
    12121 ggaactttta aattaggctt tttaagtgaa gtgcatactg actttgttct ttcaggaatt
    12181 actgaagaaa taggactctt aggtcttggg gttatttgct atatttatct ttggatgatt
    12241 ttaagaattt ttagaattgc aggaagatgt gaagctaaac aagattttat tttttgttca
    12301 ggcatagcct tacttttact tttttctttc tttatgaatg cttttggtat tatttctctt
    12361 actccactaa aaggtgtagc ggttccactt ttaagctatg gaggaagttc aatgtgggca
    12421 atttgcatag gcataggata tgtattaatg atttcaaaaa aggttaaatt atgacaatag
    12481 ctttaacagg tggtggaact ggaggacatt tggccatagt gcgttgctta ttagaaagtg
    12541 cgattaaaaa aaatatagaa tgtgtataca taggtagtca aaatggtcaa gataaagctt
    12601 ggtttgaaaa tgaagtacgc tttaaggaaa aatttttttt aagctctaaa ggagtggtta
    12661 atcaaagcaa atttgacaaa atcagttctt tactccacac cttaaaactc tccaaagatt
    12721 gtaaagaaat ttttaaaaaa taccacatcc aagccgtttt tagtgtaggt ggatacagtg
    12781 cagctcctgc atcttttgcg gctttattct cacatttgcc tctttttata catgaacaaa
    12841 attcaaaaag cggctcttta aatatgcttt taaaaccttt cgctacaaaa ttttttagcg
    12901 cctttgaaaa agaaattagc ccttatcctg tagcagataa attttttgat aatgctagga
    12961 ttcgcaaaga attaaaaaat attattttct taggaggatc acaaggagct caatttatca
    13021 acgaactagc tttaaattta gcaccaaaac ttcaagaaca aaatatcaaa atcatccatc
    13081 aatgtggaaa aaatgatttt gaaaagtgca aaaaacatta tcaaagctta aatatccaag
    13141 ctgatatttt tgattttagt ttaaatttgg aagaaaaaat gaaaaatgca gatctagcta
    13201 tatcaagagc aggtgcaagt actctttttg aactttgtgc taatactttg cccactattt
    13261 ttatacctta tccttatgca gctaaaaatc atcaatactt taatgctaaa tttttacaag
    13321 atcaagcttt atgtcaaatt tttatgcaaa actctattaa tcttgatgaa ttttttaagt
    13381 caatattaaa actaaatcta gaaaatattt ctacaagatt gcaaaatata acccaaaaaa
    13441 atggcgcaga tatgctaatc caaaaagctt tatttgataa tttgactttt ataagataaa
    13501 tatccaaaga tatttactaa aattccaaca aaaactaaca tcaaaatagc aaatgaaaaa
    13561 ttttcaaatt tgtcatgcaa aaaacctata atccattgtc cttgtgctgc aattaaatat
    13621 ccaaaaccct gagctaaagc agaaagtctc gctgctattt gagcattaga gcttttttgt
    13681 gcaataaaaa gcaacgcaat gccaaaaact ccaccccatg gaaaacccat gataaaagca
    13741 ctgataataa tagaaatttt actatcaaaa ataaagagca taccaaaagc gatcacatac
    13801 atactgcaca aacctgctat gtaaaaagta tgtaaatttt gtcttaattt tcctaaaagt
    13861 aaagggccaa aaagagacac tggagctgca acaagttgag caaataaaac catacttgta
    13921 gaaaattctt tatcaaatcc tttttctaca acaatttgaa cataccaaaa aaacaaagaa
    13981 taagctaaaa aactttgaaa tcccataaaa agagtaattt tccaagttgt taaatttata
    14041 aaaagattga tttttttatg agcttttttc ttaatacgaa aaaatctacc atttttagct
    14101 tgaggatagt aaactactaa agctacaaaa gaaaaaatag cccagaaaaa catagctcca
    14161 gctaaatcaa atacactaag caaaggtata gctaaagcaa tacctataat cgaagaaata
    14221 ctcaaaacaa gactataaat tcccattata cttgccattt tttttggaaa tttttcttta
    14281 ataaaactag gaagtaaaac atttgcaatt gctataccac agcccattgc taacattcct
    14341 aaaaataagc catatacacc aaaataagaa cgaataattt cgcctaaaaa aattaaaaaa
    14401 attccaaaaa caatagcacg aataggagaa aaatacccca caataaaaga aatacctcca
    14461 aaagctatca aaggaagact tgtaagtatg cctgctacgg ttgagtttaa ataatactta
    14521 tctttaataa tatcaataat aggccccact gcagtaattg gggctctaag attaaaagct
    14581 acaataataa caataataac attaatccaa aatatctttt taaaagaagc cataaaagcc
    14641 ttatttgtta agttctactt tgaatatttt accttctgcc atcttaggaa tccataaaat
    14701 attaccttca ataaatatat ctgcaggacc tttcatcaaa ggaagttcaa gttttacaga
    14761 tttaacatta tctaaattat aaatatatcc atttagatta tttccccaag aacttaccaa
    14821 taaaccatct ttataaggaa ctattccatc ataagattct ttttcatttt taattatact
    14881 gagttctttt gtatttaaat tataagccat tacaacaccg ccacttacac catcaggatg
    14941 ataaccagtt ataaaaagct tatgtttttt tctatctaga tataacccat ttggaccgcc
    15001 aaattttgct aaatcaagtt ttaataattc atcatattgc ttagttttta aatcaacctt
    15061 taaaataagc cctgtgccag tatcgctaac caaaagcgta ttgtcgtcta atttttctat
    15121 gtcatttaaa aagattgcac ctttaatagg taaattaaaa atttcttttt tagttttaag
    15181 atcaaaaccg cgtaaaacat cgatatctac cacataaaga gtttttccaa tctccatcat
    15241 gccttttggt gcattaagat gggttaaaaa tttatattct agcactttgc catttttatc
    15301 aagcttagaa ataaatccat cattatcttt cgccaaaggt tcaagttttt ctcctacatt
    15361 agatacataa acatagtttt tatctacaaa aatactttca gggcttttaa aaccatcaaa
    15421 ttcttgatat tttaattcac ttgcaccaag caaacttcca agaagcgcta aacttaaaac
    15481 atattttttc atattttctc ctttatttaa aaatattttc attgaattat atttatttag
    15541 ataaaaaaaa tgtgctagtt ttttgataaa aaatacaagt tttttgtttt ttgatattgc
    15601 ttaggagttt gctcatattt ctctttaaat ctttcaataa accaagctac cgaagaaaaa
    15661 gcgcactcat tagctatttc attgatattt tttttagaaa atttaagtaa aatctttgct
    15721 ttttgcaacc ttttttcatc taaccatttt ttaggacttt gtccaaaaca tttcttaaat
    15781 tctttagaaa aagttgctaa atctaatttc gcaaaattag acatttcatt tacgcttaaa
    15841 aattctctac cacaatactc aaaaagttgg gaaagatcaa ggcgaaattc ttttaaaatt
    15901 cctga
//
LOCUS       DARGEM010000026        15632 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.026, whole genome shotgun sequence.
ACCESSION   DARGEM010000026 DARGEM010000000
VERSION     DARGEM010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15632
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.026"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..493)
                     /locus_tag="SFZ78_000652"
     CDS             complement(<1..493)
                     /locus_tag="SFZ78_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEG8211549.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEI"
     gene            complement(490..1095)
                     /locus_tag="SFZ78_000653"
     CDS             complement(490..1095)
                     /locus_tag="SFZ78_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8211550.1"
                     /translation="MWGKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1085..2230)
                     /gene="thiH"
                     /locus_tag="SFZ78_000654"
     CDS             complement(1085..2230)
                     /gene="thiH"
                     /locus_tag="SFZ78_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG8211551.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2233..3009)
                     /locus_tag="SFZ78_000655"
     CDS             complement(2233..3009)
                     /locus_tag="SFZ78_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG8211552.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSKELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAAKAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(3012..3815)
                     /gene="thiF"
                     /locus_tag="SFZ78_000656"
     CDS             complement(3012..3815)
                     /gene="thiF"
                     /locus_tag="SFZ78_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG8211553.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(3812..4003)
                     /gene="thiS"
                     /locus_tag="SFZ78_000657"
     CDS             complement(3812..4003)
                     /gene="thiS"
                     /locus_tag="SFZ78_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG8211554.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4013..5110)
                     /gene="dapE"
                     /locus_tag="SFZ78_000658"
     CDS             complement(4013..5110)
                     /gene="dapE"
                     /locus_tag="SFZ78_000658"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG8211555.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(5115..5714)
                     /locus_tag="SFZ78_000659"
     CDS             complement(5115..5714)
                     /locus_tag="SFZ78_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG8211556.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLGNVIFMRSLAIFGFCFLTYMAYLMLKKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            complement(5707..6408)
                     /locus_tag="SFZ78_000660"
     CDS             complement(5707..6408)
                     /locus_tag="SFZ78_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG8211557.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLEWYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(6451..10290)
                     /locus_tag="SFZ78_000661"
     CDS             complement(6451..10290)
                     /locus_tag="SFZ78_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8211558.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLVDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKI
                     NNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLE
                     VFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYI
                     SFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIEL
                     DRLEKEKEKILQKYLFS"
     gene            complement(10299..12509)
                     /locus_tag="SFZ78_000662"
     CDS             complement(10299..12509)
                     /locus_tag="SFZ78_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG8211559.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IYELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFIL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(12499..12849)
                     /locus_tag="SFZ78_000663"
     CDS             complement(12499..12849)
                     /locus_tag="SFZ78_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211560.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(12842..14140)
                     /locus_tag="SFZ78_000664"
     CDS             complement(12842..14140)
                     /locus_tag="SFZ78_000664"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG8211561.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFDSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYSNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(14204..>15632)
                     /locus_tag="SFZ78_000665"
     CDS             complement(14204..>15632)
                     /locus_tag="SFZ78_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG8211562.1"
                     /translation="FPLIALNLILIIVYVVALRGPFKHVAINVQNYSFSEYSVVNDTM
                     LNPIMAFSWALKQYKEEAALKAITSLKAQELKEKLFDYLHQSPINLKAEKNHPSVFVN
                     LMESFGLNLADFANTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANLFFVSPFSN
                     ISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDEIIDENILM
                     KEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKIPQNDLPKL
                     ENIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVIIAATGDHRV
                     REMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYALSLNNVKY
                     LSVGGRNMLARSSDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDMNKAFNLDV
                     YTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         5068 a         2913 c         1923 g         5728 t
ORIGIN      
        1 aaatctcttc aaatttcaaa ctcactatag gatctaaaat ttgcgtattt tcttcaaaat
       61 gcggtgaaaa actttccaaa attccttgca aaatcttatc attttttacc caaaaaattt
      121 catagttttg aaacttttga tctagtttaa aaaaatcttt atacttataa ataagctcaa
      181 ttaaaaatgc attgtcaaaa aaaaataaat aagcttcata aactccttta ctaagtccta
      241 cattgcttaa agtatagctc ccagctttta aaaacaaagt ttcataagag ttaatcttat
      301 aatcttttga tgcagtgtgt aaaattttat atcctttgcg aacaaaagtt aaaagatgac
      361 ttcctacatt aacaaaagta gaatgcgaag tatccgtttg tgtatattta gcaaaagtgc
      421 aagatttaat ttttttataa ttgacacctt ttaattgctt taaatcttct ggtaaagaaa
      481 gaattttatt catcgtaaat tttgcctaca ttctaaaaga tactttttaa gatctttttc
      541 tttcattaaa atttcacgca tgcaaacacc tactacattt atatctttaa aattttctat
      601 attttgagca ttgataccgc ctatagcata aagtggaatt tgactaaatt caagcaagga
      661 ttttaaaaaa tcaatccctt taggttctaa acccatcttg caagaacttt caaaaatatg
      721 ccctacaaaa gcataattta ccttatagct catcgcctct aaaagctctt ctttgctatg
      781 gactgaagta ccaagtatat gaaaatattt tgttaattta ggttcttttc ttagcaaaga
      841 aagcggtgcg tgaaaataac gatgtcccaa ttttaaacac tccctatcaa aaaaatgcaa
      901 aaaacaagtc actttttgct ttgcgcaaat gcttaaaact tcttttgcta agtcataata
      961 ctcaaattcg cttaaatctt tttctcttaa aactatagca tctaccttag ccttagcaag
     1021 tttttcaatc tgctttaaaa agtctatctc tacacatttt ctatcgctta tggcgatgat
     1081 ttttttaccc cacatagata ctatcgctca tcacagcttg caaatttgat cttttaagca
     1141 tagctaaaat ttcatctacg cttctatcat ctgaaatttc aaactgctca tcgccctttt
     1201 tctcaccctt atgctcacct atacccacac tcactcctgc actcatttta gtagcaccaa
     1261 gcttgataac ctcatctcta aaacctattc tttcacgact tgaaatggta atgcccgcaa
     1321 aaggcaaaaa gagtctataa gcacaaagta cttgcaaaag gcgtttttca cttacatctt
     1381 taggatggat tttggcatta ttgataatag gtcttaaacg cggcactgaa atagaaattt
     1441 cagcatgcga ataagcttgt tgtaaaaaat gtgcatgaag cgccgtagca agagcgtctt
     1501 ttctaaaatc atctataccc aaaagtgccg caaaagccac tccacgcata cccgctttta
     1561 aagctctttc ttgagcatta aagcgataag gaaaaatgcg tttttcacca gctaaatgaa
     1621 ttttagaata ttttagagga ttgtaagttt cttgaaaaac agtcacataa tcacaaccct
     1681 tttcatgcaa aattttatat tcatcttcat tcataggata aatttcaacg cccacaacct
     1741 taaaatactc tctagctatt ttacaagcat ttgctatata ttctacactt gcaaactccc
     1801 tgccctcgcc tgttagcatt aaaatttctt ctaaaccact tttagcaatg gcttgcattt
     1861 cttcgtgaat ttcagcttca tttagcttag ctcttgcgat tttattacct ttttgaaaac
     1921 cacaataaac acatttagaa ttacaataat ttgacaaata aagtggggta aaaagagaga
     1981 tagaatttcc aaaatatttt tgcttgactt tagcggattt aaaggctaat tcttctatga
     2041 aatcttctgc tgcacttgaa agcaaggctt ttaaatgctc tatgcttaaa tgtgtttgat
     2101 ttaaagcatt tttaacatct ttagcgctaa attgactctc atcatagctt tgaacttgag
     2161 ttaaaacctt atttaaaatt tcgcttttta tttcctgcat gtgaggtaaa tactgcatat
     2221 aatcttgcat aatcaatccc ttaaaaagcc tgttaatgga gaacttgctt tagctttact
     2281 cacacttgcc aaacctgcta aaaaagccgc tcttcccgca tttactgcca aagaaaaagc
     2341 tttagccatc aaggctatat ctttagcttc agctatggct gtatttacca tcaccgcact
     2401 tactcccatt tgcatagctt cacaagcttg tgaaggactt ccaatacccg catctacaat
     2461 gataggcaaa tcaatttcat taagcaaaat ttgtataaat tccttagcac ataagccttt
     2521 attactccca ataggtgctg ctaaaggcat gatagccgca gctcctgcat cacgcatagc
     2581 tttagctgcg taaagatcag catgcatgta aggtagaggt gtaaaaccct ctttagctaa
     2641 aagctcgcaa gctttaatcg tttcataatt atcaggcagc aaatacctac tatcacttat
     2701 cacttctatc ttgataagtt ctccacaacc aagctctttt gaaagccttg caatgcgtaa
     2761 ggcttcttcg gcgtttcttg cgcctgaagt gttgggtaaa agtgtgatat ttttagggat
     2821 ataatcaagt atattagcga tttcccctgt atttgcacgg cgtaaagcta gagtgataat
     2881 ctgcgcttta gcttcttcta tggctgattt tataagctct agtgaatatt ttccagaacc
     2941 taaaataaat cttgaatcaa actcgtattt gcctattttt aatttatcat tttttaaatt
     3001 ttcttgcatt tttactcctt attcgctaaa agctctaaaa caagattact ttgatgtcct
     3061 gcacaaatat ttacccttgg tgccataagt ccatttccca ccttagcacc atttaccaaa
     3121 tccccacata catagaaatt tttagcaatt tttcttgttt gtatgctgtt gctatcacca
     3181 tagcccgcaa gccctgaagc acagattaaa acactatctt tgtaaaatct atgaaaattt
     3241 tgcgctatca tcgcttttgc gatagcacta tcaaaggctt cacaaactat atctatatct
     3301 ttaaacaaag attttaaatt atcctcatcg atttttaagg tacaaatttc aacgctgata
     3361 taaggattaa tttcgctaat ttgctctttt aaagcttcgg ttttaaactt gcccaaatca
     3421 cttacacgat aagcctgacg atttaaatta ctaggctcaa tcacatcaaa atcaatcaac
     3481 tttaaatacc ccactccact tcttgccaaa tttatcgcta tatgtgatcc aagtccgcct
     3541 aaaccacaca ccgccacgcg cccattttta agtttatcgt gaagctttgg tgtatgtctt
     3601 gctctcatca tagcatctag tgcgtctttt ggaggtaaag tatttttttc tatacaaaaa
     3661 agctcatcat tttcatttaa agcgatattc tcttttgttg caaaaccatt gataatccat
     3721 acatcatttt catttttgct gatattttca aaaaattcca aacttgtttt aaagtctgta
     3781 tcaagttctt tgccattgaa ttttactctc atcatccacc tcctacaaaa cttacgattt
     3841 cagctttatc attttctttt aaaatcaaat tttcaaattc actcttaggt ataatctctc
     3901 catttaattc caaggcgata agttctattt tcaagccttt ttctttgata aaatccataa
     3961 atttaagctc ttttaactca agcttttgtc cattgataat cattctaaac ctttaaaaat
     4021 tttctatcaa gtctttaaaa acaaggcaaa gtttttcaaa ttcttctata cttactcttt
     4081 catcaatagc gtgaattcta tcattacaaa ccccaaattc cactaccttt acaccgtatt
     4141 ttgcaaaata ccttgcatca cttgtgccgc ctttggtatt aagctctggc acttcatggg
     4201 tgattttttg aacgctttca ttcatttttt gaacgatttt attatcgata tttgtcaaaa
     4261 aagcttcgct tgattgtttt agctctaact catagtttaa accatgacaa attttttcta
     4321 cataactttt tacatcttct aagcttgtat caggggaatt gcgaacatta aacataagtt
     4381 ttaaatcatt tggcgtaaca ttacacaccc ccatacctcc gcgaatatca gttataacga
     4441 tttttgaagg actaaattca gcacttccag gatcaagatc aaaacccgct aaaagcttta
     4501 aaactggcgc aaaatcatgc acaggattga tacatttttc ggggtaagcc gcatgccctt
     4561 gttttccacg gattaaaagt tttccattga tagaaccacg acgccctatt ttaatactat
     4621 cgccgatttt tttaacgcag gttggctcgg caaccacagc ataatcaggt agcatatctc
     4681 tttcttgcat ccattctaaa acagccttag ttccatatat agcttcgcct tcttcatcac
     4741 ttgttaaaat aaggctaagt ctagctcctt taaaatccgc attctttacc gcatctacaa
     4801 aggctgctac tccgcttttc atatcttgag caccccttgc atagataaag ccttcttttt
     4861 ccacaggcgc aaaagcatta ttactccaac cctcgcctgc aggcaccaca tctacatgcc
     4921 caccaaaagc taaatgctcg ccttcatctt taaatttttt agtgagtaaa aggtttttaa
     4981 tgccttcttt ttctataaaa aaagcttcaa aatcactcag ttccatagcg atgaaattta
     5041 aagctccatc atcatttggc gtaacagatt taaattttaa aagttcgatt aaaaattctt
     5101 ttgcattcat ttttttatcc tataaaagtt ttatataata aattaagagc aaaatactct
     5161 ataattatag ctgaaattat attgattata aaaacaactt ttgcactaaa aacatgacta
     5221 tatcttgcca ccacaaaggc taaagcactt acccaaaaaa gtatagccac aacaagccct
     5281 aaagtcatca aataagcatg atcactactt aaaaccacac ttgcagcgct aagccaaaat
     5341 cctatcacaa aaggatttga accatttaaa aaagctccct taatataact tttcaaaaga
     5401 ctttctttaa attctttatg ctctaaattt aagctttctt tctttttttt tagcatcaaa
     5461 tacgccatat aagttaaaaa acaaaaacca aaaatcgcca aagaacgcat aaaaataaca
     5521 ttacctaaaa aatttaaaag cccaaattga agcaaaaaaa gataaagcat atctatgcta
     5581 aatgctccaa gtcctacagc tatggaattt ttaaaagctt ttagcgcata agttaaaatc
     5641 aaaatattta caggcccaaa aggcacactc actccaaaac ccaaaaaaac tccacttaaa
     5701 aaagaatcaa acattaccat ctttcataaa attttctata tcaagtgcga ttttatcaat
     5761 agcgcttata atatcttcta tatagatttt atcaaaatac cactctaaat tcgcatcttt
     5821 ttcgtagata tttaaaatac ttttttcgca cattgaagca taacgcccta caggcaaaac
     5881 cgccccactt gtgcctacgc tgataaaaag cgaagtttga tttagcaaag aataaagcgt
     5941 agcataagca ggggcttgct cttcaaacat gactatattg tgtcttaaat ccttgctttt
     6001 gcattttggg cattgtttat ctgtgatttt ttcataacct atattaaaaa ttccttcgca
     6061 ttttaagcag cgaagttcag gcaaaaagcc atgcaaatgt actacatctt tacaccctgc
     6121 acgctctagc aaatcatcta cattttgcgt gatgacaaaa aggtttttac cccatttttc
     6181 ttttaactgt gcgatttttt catgagcatg atttggcttt acattttgaa gttgtgccct
     6241 tcttgcatcg taaaaatcaa gtactttttt aggatttttt ctaaaacctg ttgcagagca
     6301 aacctccatc acatcgtatt cttcccaaag tccatcatta tctctaaaag ttttaagccc
     6361 acttggagca gacaaacccg ctccgcttaa tatcataatg tttttcatcg ctaaacctta
     6421 taaaatttac aaagtttagc gaaaaatgct ttaagaaaat aaatattttt gcaagatttt
     6481 ttctttttct ttttctaatc tatcaagttc tattttatat tcattgattt ttttctcaat
     6541 cttgtcagtt atatctgcta tttgatcttg aaattctaaa gaaggaagtt taactcttaa
     6601 tgcttttatt ctatctattg aagctctaag ttttcttgaa aatccttgtt ttttaccagc
     6661 ttcatttaaa ataaaactta tgtatttagc atttattttt gtatcatcaa cccttaatac
     6721 cccacaatga tcagttggat aaaacttttt attttttggt ataaatccca ccatccaatc
     6781 tccatctata ccccacaaaa cagaatcatt atcataatct tgcaaaattt ctttattaac
     6841 aaatccaaat acttccaaca catttgcact ataaacagga atttgtccat tttcaagcag
     6901 ctcattattt aaaactcttt ttccaatact tagtttaaaa attggatttg ataaagcata
     6961 ttctttaatt gttttattaa atgatgataa aaattcacta tccaaattta ttttacacaa
     7021 attattaatt ttatctaaaa tagaatttag ttcatattct tgattgtcct ctataatacc
     7081 acatttttga agcattgctt tgattaggtt ttgatactct tttatactca aacttaaagt
     7141 attatactgc tcttctatct tttcacactc tgctacgatt tgtttttgaa tttcaagcgg
     7201 tggttttgga ataaccatat tttgcaagat tcctaaattt atattttgtt gcgaagttgt
     7261 aataacttcg ttatataatt gaaatttaaa ataatcaata gcatacataa gatatttatt
     7321 tataaattct tcatttggaa taatagctac tatagcttga tttgttgtca tatcttcgcc
     7381 taatattcca actctaccaa tagttgcata aattgaaaca acaacagcac ctttttgtat
     7441 catttttgca ttagaattct taaaaccctc tcttgtaatt ttttctttag tatccataat
     7501 aacttgacga ttagagtaat cgctaattgt tagccactta atatccccat tccaataatt
     7561 tatatttttt cttgatggtg ttcctcccat gaaaaaatct ccacaaattt tcaatttaac
     7621 caatgggtat tgagacttta tttcttctct ttgagttttt ggatttaaac ttatagcttt
     7681 attaaattcc actttttcaa aatccatcat atcaacaagc cttgcttttg tagcataaat
     7741 ctgcaattct tgcgggataa catcaagcgt atttaaaaaa gatttgtaga ttaaagtatt
     7801 aagcttagtc tcattttgtg gattacctct ttcaaaaagt gggctcaaat aaggctcgtg
     7861 caattctttt aaaccttcat caccttttct attactccac tcataaccta aaaatttctt
     7921 ttgttctttt atatcacttg gggattttat gattaaaact tcttgattaa gacttagact
     7981 aaaataaagc aatttatcct tttctattgc ctgagcataa gctaaaaagg ctttatcttc
     8041 taaatcttgc ttatctttac tttctttata aattttagat tctttaagtc ttttataatc
     8101 gcttgtttgc ctaaatgcat tgcaataatc tttaaaggct tctagctctg caagtttaga
     8161 atctaagttt ccatttaaaa aattgctata aagctcttta tcaaattttc taaaatcaca
     8221 atacgcactt agataatttt gataaaagtt ttcactgtct tttaaatttt cagcttctat
     8281 gcgttcttta atcaaactat aatcttgaga aataagatga ttttcttgtt taaaagtttc
     8341 ttttttgcgt aaaaataaaa taatcgtatt tgtccctgtt gctccaaatg tttgattacc
     8401 tagctctaca atggcaataa aatcaaaatt ttgaaataat atttctcttg tatttttata
     8461 aatagaatct ttatttaaaa tagaacttgg taagataatg gcagctttag cattatcatt
     8521 taaaatttga tttgctcgct cacaaaaaaa gcattcaata gaattatttg tttctatgtt
     8581 tatatcatcg ttaaaaagtt tataggtatt tttagattta tcacttaaag tttctaaaaa
     8641 tccttttaca gaataaggcg gatttgctat aagcaaatca aaactatttg attctatttg
     8701 tggttttgct ttttctcctt ctaaattatt tgtatttgct aattcaaaag aagcaagtgc
     8761 atcagcgtat aaaatattga tttcattttg cccatacatt gcacttgata ccttagaaac
     8821 cttacttaag cgatactctt tttcaatacc ataaatattt ttataatgct ctttaagctc
     8881 atcttctgtt agataacgct taagctcatt ggcataggtg tttaaaaaat gtccagcacc
     8941 acaagcataa tcaatcaccc ttaaagcttt agagtttttg cttaacattt cttgaagcgg
     9001 taaagaatac ataataaatt cacaaatttg aataggggta aaaaactgcc cttcatcttg
     9061 cttcatacct ttttgcaaaa aaagttcaaa aagattgcct aaaaattgat ttgtagagtt
     9121 ttgggtaagc ttgtaatttg caaaaagctc tactatttct tttaatacaa gtgcattttt
     9181 taaaaataat tctttattat gcacttctaa aaatgcaaaa tcattatttg aataaaattt
     9241 taattctttg atgtaatttt gcattacttc ttttaaagtt tttatcttta attgcttaaa
     9301 gtctttttct atatcttcat tagatacaaa ggtaattttc tctcctaaga attctttcat
     9361 agcttcttta taaagccaca ttaatctatc ttgcatattt gcataagtat ctgccattac
     9421 accaaaatat ccaaatttga gattgttttt attaaaagtt tcatcataaa ttttgcaaag
     9481 aaaaatattt acaagtttat caaaggcatt ttccttacct gatatattat gcttgcgtaa
     9541 aatttttgca aattcgtgat atttaccttc ttctttaagt tctttaagat tatcaaaagt
     9601 tggagtaatt tctaaaattt tataggcatt gacatttgct tcaaaaatac cttgtttaaa
     9661 atattgcagt tcataacttt ctttccaagt tttaaaaagt tctatattgt tattagattt
     9721 tttataagaa ttttgcaatt ccttttcttt tagatattct tcgttatcgt aagcttgtat
     9781 gatgtaattt ttatattcta acttatcgct aaaatcactt gtataaagac aaagatattt
     9841 tacacctttt tcttgctgaa aataagaaaa aagctgtccg ccatcttctt gcattctatt
     9901 ccattctttt ataaattcac tatttttaga atctgtggtt ttacattcta taatcaaata
     9961 aggattgttt tcattatcct ttactaaaat atcagcctta ccaccttttt tatccctgcc
    10021 aagattccat tttggctcta actctaaatg ttcagcctta taaccttttt ctaaaagtct
    10081 atgcacacat tcaaaaacta caaaattttc agggtgtgaa aaattagaag tagttttatc
    10141 gtgaattttt atttcttttg ggtaattaat actttggttt ttataatcta ttaaaagtgt
    10201 gtaattattg attgttttta cataattttc atttttattt ttaaagccta agttttctag
    10261 aacttgtttt aaattatctt ttgtaatcat ttatttcctt ataatctcac caccttagca
    10321 ccaaagccac cttgattgat cggtgcgtca ttaaagccct tgacactttt atgagttttc
    10381 aaaaactctc ttacagcaaa ggcaagcttt cctgttccta taccatggta aactaaaact
    10441 tcatcaaagc ctgcaagcaa agcatctgaa ataaatttat caagccttga aatagcttca
    10501 tcactcctaa gcccgtgcaa atccaagcta acactaagat tagtcggttt tgccacacta
    10561 atgcttgttt ttggacttat tttagatgta ggagtgcttt ttttaagcag ttttaaaggc
    10621 acacgaagtt tgatcccatc actttcaacc atagcatcgt ttttagaaat gcttatgatt
    10681 ttacccttaa ttttttcata ttttacaaaa tcccccacac gcaattcttc gttttgctcc
    10741 atacttggca agatgatttc ttttttaagt tcattggctt tattaagact tctttgcttg
    10801 tcttttatat ctttaagctg tatggttttt ttagcttctt ctatggcttt gtgaaattta
    10861 aattctaaat ttctcaaact cgtacgaaat tcttgttcat ttttttcttt ttgctctttt
    10921 aaggaaagta aaatttcatc gactttttgc tcttttttct cgacattttc aagcttagct
    10981 tttagttcta attcaagatt gatattttta cccacaagct cttctaaatt ttctttatcc
    11041 tcgccataaa gctttttagc ctcgctaact aaattcggcg gaatctgata acgcaaagcg
    11101 gtttcaaagg cataagattt tcctatggtg ccttttaaaa actcgtattt tgggcgtgaa
    11161 agctcttcat catataaggc agcgatgagt tcaacttgct cattctttgc taaaagcatg
    11221 gcaaggcgtt tgtggtgtgt agtaatgatg attttaagat tattagctat gagttttgaa
    11281 attaacacac tatacaaaca agccgcttct tcaaaatctg ttccaagctc tatttcatcg
    11341 atacctaaaa gcaaattttt cctagaaaaa agtctagaaa aatgcaacat tcttcctgca
    11401 aaggttgaaa tgtcgttttt aacattttgc ggatcttcta tgatggcatc aaattcttta
    11461 aaagtaccga ttttactttc acttgctttt atatgcatag gcaaaagatg tttagctaaa
    11521 aatgctgcgc ttagcatgga ttttaaaagc atggattttc cgcctgcatt tacccctgtg
    11581 atgattaaaa cttgtttttt aaattccaaa ctcacgcttt ttggattttt taaggcagga
    11641 tgggcgaaat ttttaagcac taaatccgta ctttgatcgc acaaaataaa ttcaaaatcc
    11701 ctttttttag caagcaaaac tctagcacta taatggtcaa aaagatcaaa ggctgtattg
    11761 ataaatttta aaaaaggtag attttttgct aaaaaagctg agaaattttt agcgtattca
    11821 taataaattt cttctttttg atttttgatt ttttctatat cattttgcaa attttcaaca
    11881 cttaaaggca cgatataaaa gccaccgcca ctacttctac ctatgatttt tgctttaata
    11941 gcgtgattaa acccacctct tacaagcaag gcttcaagat tgtttataag atggatttgt
    12001 gtatcgataa gataaggcat taaagctttt gtatagcaaa atttcttaaa ctcagctatt
    12061 atgctttcgt ttttcaatct taaagcggca ttaagattta caagtctttc atctaaactt
    12121 tcttttaatt ctcctttctc atcgaaattc aaacaaagct ccaaagcccc gctaacaaat
    12181 tctatctttt gtagccaaga gtctaaattt gttcctagtt ttattttttt taacttttca
    12241 aaataacgaa aaatttttac aaattcaaaa atttcatcta aatgcaaaat tccttgctta
    12301 cttaaatgta ctaaggcttt atcaagattg ctaagctctg gcatagtagg aaattccacc
    12361 tcgcaaagct catatatacg tttaaaatga agattagaat ctccttgcaa aaaaatctcc
    12421 ttatctcttg caaaaagagc tttaaactct tctaaatagc tgtttaaatc aagctttgag
    12481 atcaattctt cttttgtatc attcatcatt taacctacaa tctttaatat ctatgattaa
    12541 agaattaaaa ctttgattat tatcctttga aataaaactt cctgtaccaa attcataatt
    12601 aaaatacgcc ttagaaacat tgatatcttt acataaaata tttttatttt gattaaaagc
    12661 tacgataata tctgttctta aatgactttt ttgtgtgttt tcaaattcaa aaaatactgc
    12721 taaaacaata aaaatcacaa gcaaaatacc aaaaaaaggt ttagtttttt tgcctaattt
    12781 ttcacgcaaa gcaaaagtga ttaaggctaa aattaaaata attaaaaaat ataaaaaaaa
    12841 cctactcatt tttttgcctt aatttattac tgatatctcc tgcaccaaaa cctataataa
    12901 gcccttcttc aaaaacttgc cccttagaag ccaccaaaaa tttaccctct cttttgatat
    12961 cttctacaaa taaagcctta ggaaaaaccg cttttaaatc aagccctata ggctcttctc
    13021 ctgcagcata aacaggtaaa attataagct cgtctacacc ttcaaaagcc tttgcaaatt
    13081 cctttaaatt tgcagccaaa cgcgtgtagc ggtggggttc aaagatagct gtgattttct
    13141 tatatccgcc taattttgcg tattcttgtg ctgcacttaa agtcgctttt atttcggtgg
    13201 gatgatgacc ataatcatcg attaaaacca aattttcatc agcatgtaaa atatcaaaac
    13261 gctttttaat accttgataa tttttaagcc tagttcttat cgtttctata tctaagaaat
    13321 ttaaagccgc caaaatcgcc aaagacgcat caagggctaa atgatatccc atgccaaaaa
    13381 ccttaaattc acctaaatct ttcaactcaa agcttgtaaa aggtttgaaa ttttctatac
    13441 gcatggtgca gtttttgata tctttgctcg gataaagctt ggttgactca tttttataat
    13501 ttttcaaaaa ctcatcttca gcattaatca cgcgaatttt agccgtatct aaaaactccg
    13561 cataagcatg atggagtttt gaaacttcat tgctataatg atctaaatgc tctgcttctg
    13621 cattagtaac tatagccaaa taaggatttg aatttaaaaa agaactatcg ctctcatcag
    13681 cttcaaaaac aaggttttgg ctttctttat aaatcatatt tgaatcaaat tcttttaaaa
    13741 tcgctccgat gatcacagaa gcatcatcaa gcaaagaagc caaaatactt gaagttgtgc
    13801 tttttccatg tgctcctgca actgcaaaaa cgcgcttatc ttctaagata agaggtaagg
    13861 cctccttgcg tgaaaggcat ttaatgccta attctttagc gtgtttaaat tcaggatttt
    13921 cttctttgat agcagcagaa taaataacta aatctttgtt taaaatattg tctttatgat
    13981 gagggatact gaccttaacc ccttcttttt ctagttcttt agtgatttta ctctctttaa
    14041 gatcacttcc gctaatttta aaaccttttt cttttaaaaa tcttgctaaa gcggaaattc
    14101 ctataccgcc tatgccgata aaatggatat tttgcatcat ttaaaccttt atactttaaa
    14161 ggctaaattt tagcactttt ttactaaaaa gaaaatataa atcctatttt gaaatgccta
    14221 aacgctcggc taattgatat aaatttaact ctctataaaa tttatcaaag tctttagtat
    14281 aaacatcaag attaaaagct ttattcatat cttttaaagt atcattactt tcaaaatagt
    14341 accctttacc gccactataa ataccttttt tatcaatcca tacagcatcg ttgatcccaa
    14401 attctaattt ctcatcactt gatcttgcta acatatttct tccgcctacg cttaaatact
    14461 tgacattatt taaacttaaa gcataaagag ttggaaaaat atctttatga gatcctacac
    14521 gatctttatc ataataaata ttatcttgca aatccttagg aatataaaga taaaaaggta
    14581 cactataagc aaaagctttt tgggaattta aatccatact catttcgcgt actctatgat
    14641 ctccagttgc tgctataata acactattct taaatggact ttgttttact ttatctagaa
    14701 attttccaaa ttcattattt gcataagtat aagctttgat aatattatct tgtttatctt
    14761 tttcataagg aagcatatta agcaaagttt gtggaatgtt ttctaatttt ggcaaatcat
    14821 tttgtggaat tttataaggt ggatgattgg atatggtaag agcaattata agggtgttgt
    14881 gtggattttt ttgaagcaag tcataaactt ttttatataa aaactcatca gctactccat
    14941 aaccattttc actatctttt gctccattat actctttcat taaaatattt tcatctataa
    15001 tctcatctac tcccaaaata ctgagataat ttttaatatt ttgccaagat ccattacctg
    15061 cacttacaaa aatcacctta tatcctgctt tcttataaat agcaataggt gttaaatcca
    15121 aataagtttt ctgaaatttg cttgtagaaa tattagaaaa tggacttaca aaaaataagt
    15181 ttgcaaaact tggtatagtt ccattactag aactcaaaaa acgtttgaat aaaaaatctt
    15241 gcttaaaatg tttatctaac gaacccaaaa aattatgttc tgtatttgca aaatcagcca
    15301 aattaagccc aaaactttcc attaagttaa caaatacact aggatgattc ttttcagctt
    15361 ttagatttat aggactttga tgcaaataat caaaaagttt ttctttaagt tcttgtgctt
    15421 ttaaagatgt gatagccttc aaagctgctt cttctttata ttgttttaaa gcccaagaaa
    15481 atgccataat tggatttaac attgtatcat ttacaacact atattcgcta aaagaataat
    15541 tttgcacatt tatagccaca tgcttaaatg gaccccttaa ggctacaaca taaacaataa
    15601 ttaatattaa atttaaagct atcaagggaa at
//
LOCUS       DARGEM010000027        15593 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.027, whole genome shotgun sequence.
ACCESSION   DARGEM010000027 DARGEM010000000
VERSION     DARGEM010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.027"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(3..473)
                     /locus_tag="SFZ78_000666"
     CDS             complement(3..473)
                     /locus_tag="SFZ78_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG8211563.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(530..1954)
                     /locus_tag="SFZ78_000667"
     CDS             complement(530..1954)
                     /locus_tag="SFZ78_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG8211564.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGVKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            2126..2440
                     /locus_tag="SFZ78_000668"
     CDS             2126..2440
                     /locus_tag="SFZ78_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG8211565.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            2443..3138
                     /locus_tag="SFZ78_000669"
     CDS             2443..3138
                     /locus_tag="SFZ78_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211566.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLKIENEIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            3138..3629
                     /gene="fldA"
                     /locus_tag="SFZ78_000670"
     CDS             3138..3629
                     /gene="fldA"
                     /locus_tag="SFZ78_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG8211567.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIALKLGISDVFNISDIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(3675..4205)
                     /locus_tag="SFZ78_000671"
     CDS             complement(3675..4205)
                     /locus_tag="SFZ78_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211568.1"
                     /translation="MSKITLILSFFITLFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLTLKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(4211..4921)
                     /locus_tag="SFZ78_000672"
     CDS             complement(4211..4921)
                     /locus_tag="SFZ78_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG8211569.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNTTVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(4970..6775)
                     /gene="selB"
                     /locus_tag="SFZ78_000673"
     CDS             complement(4970..6775)
                     /gene="selB"
                     /locus_tag="SFZ78_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG8211570.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(6772..8094)
                     /locus_tag="SFZ78_000674"
     CDS             complement(6772..8094)
                     /locus_tag="SFZ78_000674"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG8211571.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVTKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKNIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            8172..9845
                     /locus_tag="SFZ78_000675"
     CDS             8172..9845
                     /locus_tag="SFZ78_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8211572.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILVDSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAKDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQKMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLVRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            complement(9842..11143)
                     /locus_tag="SFZ78_000676"
     CDS             complement(9842..11143)
                     /locus_tag="SFZ78_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211573.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSVKWGLSSLFD
                     LSVALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFSENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            11309..11911
                     /gene="rdgB"
                     /locus_tag="SFZ78_000677"
     CDS             11309..11911
                     /gene="rdgB"
                     /locus_tag="SFZ78_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG8211574.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLTPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIVLSDDSGICVDVLEGNPGIYSARFSSKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLIGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILTKG"
     gene            complement(11942..14413)
                     /locus_tag="SFZ78_000678"
     CDS             complement(11942..14413)
                     /locus_tag="SFZ78_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG8211575.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSLFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLKFQITVISSNYIALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGISLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDSKKRHMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDRSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNKFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKAKFPNQHKEHILKQ"
     gene            complement(14413..14982)
                     /locus_tag="SFZ78_000679"
     CDS             complement(14413..14982)
                     /locus_tag="SFZ78_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG8211576.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(14992..>15593)
                     /locus_tag="SFZ78_000680"
     CDS             complement(14992..>15593)
                     /locus_tag="SFZ78_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG8211577.1"
                     /translation="YQVNDPLSGYNKAMTSFNVALYDYGLRPVLKGYNTITPEFIRLG
                     VRNFFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGGLMDVASKMGLKKHPA
                     DLGTVLAHWGVGSGFHIVLPILGPSNLRDTLALPATWYASFTAYIDPTWASIAISAYG
                     FGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK"
BASE COUNT         5354 a         2258 c         2319 g         5662 t
ORIGIN      
        1 aactaaaatt ttttgataaa ttttagtatt tttaggctta ttttctttaa aaaattattt
       61 ttagattttt tgagtaaaaa ttctgccaca tctttgcgtc caaacataat agcaaaagta
      121 taaggtgtca ttcctaaacc attattttca tcaatatttg ctccatattt aactaaaagt
      181 tcacacatag gtaagtatcc tttaaaacaa actcccgcta atggggtttg tccacgatcg
      241 tttttttcat ctacttttgc acctttttct aaaagcattt tagcgctttc ataagaatta
      301 ttataagctg caagcataag caagctatcg cctttatgag tttttaaatt tacatttaaa
      361 cctgcttcta tcatgatttt aagattttca cattcattat ttcttgcaaa attaaaagcc
      421 attttgcaaa gctcttcaaa tcttttttct tcttctaaac taagagttgt cattgttttt
      481 ccttaattat tataatcttt agtttgccac caaaagtggc aagtaaaaat tatttttcta
      541 aagctttttt aattcctttt gcataatcag gtgaaatttt ttcaaaatgt tctaaagctc
      601 tagtgataat tttttcatca actccctcca tagaagcggc gatattatga aaaagttgag
      661 ttttttgatc atcattcata agattaaata aagctcttgg ttgagtataa aagtcattat
      721 ctagtggagc atatctttgt gctacgcctt ctaagactaa atcaggttca agatagcttt
      781 tgtcttcttt tgggctatta tcatagctgt ttggttcata ataagctgca tcatttttat
      841 aactatcaaa attcatagca ccagcgacat tgtaagtatt cacttcgctt tttgcacgat
      901 ttacgggcaa aagatgataa ttagttccta ttctatatct ttgtgcatca ggatatgaaa
      961 aaattctagc ttgcaacatt ttatcagggc taaagccaat tccaggaacg atattgcttg
     1021 gactaaaggc agcttgttca acttcattaa aataattttg aggatttttg tttagaatca
     1081 tttcgcctat atccatcaaa ggcacaagac tatgaggcca aatttttgtt aaatcaaaag
     1141 gattaaatcc aagtttttct atatcttttt cagcaagaat ttgaacttga actttccatt
     1201 ttggaaaatc tttattttct atagcattat agagatctct ttgatgactt tctctatctt
     1261 ttgctataag ctcggcagct tcttggttgg taagattttt aatcccttgt tgggttttaa
     1321 aatggaattt cacccaaaat ctttcatttt tatcattaat aaaactataa gtatggcttc
     1381 caaatccatg catatgacga taacttgcag gaattcctct atcgctcata agaatggtta
     1441 cttgatgtaa actttcagga cataaactcc aaaaatccca agcagcatta ttacttctta
     1501 gatgagttct tggatctctt ttttgagtat gaatgaaatc aggaaattta tacgcatcac
     1561 ggataaaaaa agttggagta ttatttccta ctaaatccca gtttccttct ttggtgtaaa
     1621 atttaatggc aaatccacgt acatcacgct cagcatctgc tgcacctgct tcacctgcaa
     1681 cagtagaaaa gcgtaggaaa agaggagtta tttctccttt ttgaaatatt tttgccttag
     1741 tataagcaga taaatcagcg gtgattttta tttctccata agccccactt cccttggcat
     1801 gaacggttct ttctggaatt ctttctctat tttgatgagc aagtttttca agcaaaagat
     1861 aatcttgcat aagcaaaggt ccttttacac ccgcgcttaa tgaattttgg ttatcggcta
     1921 taatgtttcc aaaatcgtta gtcaattttt tcattgtttt ctcctaaaat aataaatttt
     1981 atcaattagt aaattatatc tattaaaaat taaaattaac tgaataattg cattttattg
     2041 ataataaatt tcaaaataaa tttagttttt ttatattata ataataatta tcaaaatata
     2101 ttttaaaaat cacaaaggag aatttatgtc agttttggtt attggtgcag atgaaatcac
     2161 tcctattaga gctgttttac atgatttagg tgctaaaaaa atagaacact gggatgcgcg
     2221 taatgaaaat agagttaatc gcaagccgat tccttgtgat acagaatgta tagtaatgtt
     2281 aacaagcttt ttaaatcata atactatgaa aaaaatcaaa aatgaagcta aaaagcgtaa
     2341 aattccatta gtttgtgcaa aaagaagtgt aagttgtgtg tattgtgaat attgtaaaat
     2401 ttttaatctt aataaagaat tttcttgcta taaaggttaa agatgttatt tggatttgat
     2461 gataagcaag aatttatacc gcaaatttat cgctatttaa acaatcaaga gcttatgttg
     2521 acttttttaa ctcaatataa tgcgagcgtt gatagcgctc taaaaattcc tctttcatat
     2581 gcaaaaaata ccaagagttt aaaaatgata tttggaaatt ttttacatga tataatgcat
     2641 gtttcatttg gtaagattca aaatataaat atcaagctta atgcatacgc tttttacttt
     2701 caaaaaagaa aaagcttaat ttttaatact aaaatatcta agaatgtcga tcttttaaga
     2761 cttttaagaa tttatcttta tggcatttgt tttgatgcgc aaattttatt tagctcttat
     2821 gtttatgata aggtttcttt tcaaaataat ggaaaaaata tagatcaaga tggtgatctt
     2881 attataatag ataagaaatt tgcaatttta ccactttgca aagagattaa tacacataat
     2941 ttaaaaattg aaaatgaaat tcatggatta ttgaatttga taaaagaaaa caattttgaa
     3001 aaattttata ttgtttgtcc gcgtaacaaa aatttcacac attttattga aataaaacat
     3061 tttttgtgtg atttaaacaa aactatgtta aaattagttc cgtataaaat atcaaatcaa
     3121 attataagga gaaaataatg tcagtagcag taatctatgg tagtgctatg gggaatacag
     3181 aaggagcggc taatacaatt gctttaaaac ttggaattag cgatgttttt aatatctcag
     3241 atattgatgc agctaaaata aattcttacg ataaattaat ttgtggaact tcaacttggg
     3301 gaagtggtga tttacaagat gattgggatg gttttgattt ttcagggctt agtcttggtg
     3361 gaaaaaccgt agctgtattt ggtatgggtg atagtgaaag ttattctgat actttttgtg
     3421 gtggcatggg taaattagct caaaatttaa aagatgcagg cgcaaatttg gtaggagaag
     3481 tttcaactga tggttataca tttgaagcaa gtgatgcggt tgtagatggt aaatttgttg
     3541 gacttgctct tgacaatgat aatcaagaag atcaaactga atcaagaatt gatgcttgga
     3601 tagaacaaat caaaccttat tttgcttaat aattcttaaa atcaagagtt tttatactct
     3661 tgattgtctt tttcttaaaa ataaaaaaaa ctcactattt gatttataat tttattttct
     3721 aaagataatt gacagcgttc tttatttcca agataagctg ttcttgcaag aagacttgtt
     3781 ttttgagaat tgtgattttt agagttgatt tgtaaattaa cttgcatagt atagtagttt
     3841 tctaccatcc attctccatc gctttccaaa ggatcaaaat cataaaaaaa tcttgctgaa
     3901 gttgtgattt tttgagcata agaatgcttt ttcatatcta caagattgat taaaatttca
     3961 taatctgcat tctcttttac ttcttttaag cctaaatttt taagttttaa agtcaaatct
     4021 ctatctagag tagtttgaag ttgactagga ttttgaaagg aaattttaaa actttgttgt
     4081 ttttgtgatc tgataaaaat gccttcattg cttgtttgaa taaagctttg tgtgaaagtt
     4141 gcattggtgc aagcactcat aaagagtgtt ataaaaaagc ttaaaattaa agtaatttta
     4201 gacattaggt ttatttaata atagttggag tagcgctaag acctaatgag cgatattttt
     4261 catataagga aaaaacttct tttaattctg catcgcttac ttttggataa tttttgatat
     4321 ttgcatcata gtatttgttt aaaattgcga ttttttcttt atcatttttt gctttttttg
     4381 cttctttgta gattagagcg gatttttcaa aagcagattt tccatgtact ggagttaaaa
     4441 tataattaac ttgatagttt ttaagttcat tatcaatttg agctaaatgt tctctacaat
     4501 aagggcattc aggatccgaa aaaacataaa ttgcaggttt atttttatct cccaaagcta
     4561 ttaccatggt ttctttttgt gctacagctt tagcattttt tgtaaaattt tctcttgctt
     4621 cttgaaattt tttcatttca tattcttgag cataagaaat tcccgttttc aagtcgataa
     4681 gatcaggggt aataagacta tcttttgtaa aaagaatgtt ttcttgtttt tgtccattta
     4741 attcaacgct tacaataaca ctttcaaaac ccgtattacc aaccttttga cgatttgata
     4801 cactaacggt agtatttgga aattgtgctt taatgctttt tgaataaaaa tcactaattt
     4861 ctgaattact tgcagcaaac aaagatgctg aacaggcaag aattaaactt aattttttca
     4921 tagtttacaa atcctttaaa taaattatgt ttaattctat aatgattttc taaatgtttg
     4981 ttaaaaatct tttttcagct tctttgctta cttgaggaaa tttgtctaag tattctaaat
     5041 aagcaatagc atattttctt gaaagattga aatattcttt catactttgc acatcaagac
     5101 tttgattttt taataaattt aaacattctt gcataagttt ttcaagagct tgtttttcta
     5161 taaaaagatt gtgtgaaagt cttacaacta agcctttttg ggtaagtttt ttgagtatat
     5221 tatctccgct ttttctatca agttctaaaa aatcataaag attataagga gcttcgggtt
     5281 taataccttg tttttttaaa atttcataca tttggttatt gtttttttct tgaagttttt
     5341 caaaatctat gcctttttta aaataaattc cattttgaaa atccaataaa tttgacatct
     5401 ctttaagccc gagttcgcaa aaattttcac ttgcccaagt aatccttaaa gctaaagaat
     5461 gtgctgaaag catggcataa ggattttttt caagtatgaa tttgatgaaa tttttaattt
     5521 cttctagact ttgtaaatga tatacattaa gatttttttc atcaacaaat acttgattta
     5581 attcttttgc taatttcaat gctttttgat gagaaagttt aaatctctga taacttgaaa
     5641 gcaagccaaa gccgtatttg tgtgcgtctt ttaagaaaga aaaagccgct ttaaaatctt
     5701 tatttttcaa aaacattaaa aatttatttt tttgttcttt ttttaaaggt tcgcttaaag
     5761 gatttaaaac cttaccaccg cctataacac gattgttttg taataaaata aaagcctcat
     5821 caaaacttaa aaatacattt ttatcaaaac taaaatgcac aaaaaattca tcattttcta
     5881 gtttttttaa tatatttatt ttgcattcta tttgtcttga acccacgcaa aaaatcattt
     5941 tgctattttg taaatttttt gctttaacta aagcatcgca ttctttaaag gctttaaaat
     6001 aacctttttt acttagtaaa taaccttttt tcaactcttt ataatcacaa tttaaactta
     6061 aagccacacg gttgcaagct ttgatttgct ctagattggt atcgtgattt tgtatatttt
     6121 taacaatgag ttctttttga gtgtctaaac agatgatttt ttcatttaaa gtgatacttc
     6181 cttcattcaa gctgcctgta acgacagttc ctataccttt tagagaaaaa actctatcga
     6241 tataataatg aaaaatcagt tcttcatcat tttctttgtt ttctatggta taaagataat
     6301 tttttaattc ttctatgcct tgattatttt ttatactggt atgaaatact tttaaaatgg
     6361 gataatctaa attttttaac tcttctaaaa tttctacact tttttgctct atgttttcac
     6421 aaagatcgca tttgctaagt actaaaatga tatttttaat atcaagaatt tttaaaattt
     6481 ctaaatgttc taaactttgt tcttttaaac cctcgttaat atctacgaca aataaacaaa
     6541 cactaaagcc aaaagctcca cttaccatag ttttaaccaa atctttatgt cctggaacat
     6601 cgataaaaga aatgttttta tcttttaatt taagatttga aaaacttaaa ttaatggtga
     6661 tttgtctttc ttgttcttct tttaaactat cgccttcaaa accatttaaa gctttaatga
     6721 gtgaagtttt tccatgatca atatgtcctg cggttcctat aataacagat ttcataagtt
     6781 ttccatttga ttaattgtaa gaataagttt ttgaagttca ttttctcgta tagttctaaa
     6841 atcaagaaca aattcatcat tttcaatgcg tcctatgata ttttcttttc taaatcgagt
     6901 ttgtagtttt aaagcatctc cttgaaaagt tagtatataa gtatctaaac ttttatcagg
     6961 catagaacct cctcctacta aacttttgct ttttttgagt tgggtttgaa attttaattc
     7021 tttttgcact cttaaagctt tttcttctat aaaggataag tcatcattta aaagttttaa
     7081 ggtaataatt ttttcataat ctttttgtaa ataagctttt aagctttcat ttaaaaaaga
     7141 tagggttaat ttatccactc ttagcattct taaaagttga ttttgtttaa gtttttctat
     7201 gagttctttt tttccaagta taatgcctgc ttgcacacta ccaaaaagtt tatctccact
     7261 aaaacttaaa atatcacatt cttgtacgag ttttttgatt ttaggttcat ttttaatcag
     7321 cttttcattt aaattttcac accagccaga acctagatca taataactca aaagcccttt
     7381 ttcttttgct agttcatgta gatcttttat atttacttca ctatgaaaac ccataagagc
     7441 gaaattagac ttgtgggttt ttaaaattag agcggtattt tcactgatag cttgttcata
     7501 gtcttttaag tgtgttttgt tactagttcc aacttcgcaa agctttacac ctgcagcttt
     7561 tatcacttca ggcacacgaa aacttccgcc aatttctaca agttctcctc ttgagcttat
     7621 gacttcttta tcataacaaa gagaattaag cactaaaaaa actgccgcag cattgttatt
     7681 gaccactaaa gcatcttcgc attcaaaaag cattttaagt ttttctagca ccaaagcata
     7741 gcgagagcct ctttttccat tttctaaatc aaactctaca ttagaataat tacaaatgat
     7801 atttttacac gcttcataaa gttcttcatg gattacactt ctgccaaggt ttgtgtgtat
     7861 aaccactccg cttgcattaa tcacactttg taaatctttg cgataaaaag ttttgatttc
     7921 ttttttgatt tctaaaagta gtttatcttt agaaatttca tcttgggaaa aattttcttt
     7981 tagttttgtg acaacttttt tacaaaaaaa tgctttgata taaaaaggat aggattttaa
     8041 actctcatct tcaataagag tgttaatttg tggaaaagtt ctaaatttgt tcatcttaag
     8101 ccttaagaaa atatttggtt attttaacat agaatttata aaatgatgtt ttaaagagat
     8161 taaggaagac aatgcaagat tttgtttata taaaaaatga tgttttaatc cctttgccag
     8221 atgctattga aattttagat caggcaaatg ataaagaagc attaatttgt aatgataaaa
     8281 atcaaaaagc gcaaatttat gcccctgaga ttaattttta tcttaaaaat tctcaagatg
     8341 aaattttaga gcaaagtaaa aatgttttaa cgctttataa agcaagagct agcgtttatg
     8401 atttggggct tgatttagaa caaagcaaag aagtgcaaaa tcgtttgatt ttagtagata
     8461 gcgatactca aaccgtagag tttttaaaag aacatggatt taaggttatt gctttaagca
     8521 gtgcagaaat tttagctgtt tttggaagtg taggggaact ttgtgctgtg gttaaaaatc
     8581 aaggcgaaga agtggaaata gattttgatt ttttgctttt taaagctaag gatttaagcg
     8641 ttgtgcgtaa agattttaca agacaaagtg gatgttataa tcttttaaat tttgaaaatc
     8701 ttgaagtatt gttagagttt ttgcaaagca aaagtccaaa atatcattat aaaacttata
     8761 ttagctataa tgctagcgtg tgtcaatacc acgaaagacg cagtgagcat tgtgcaaaat
     8821 gtgctgaaat ttgtcctact gtggcgattt taaaagatga tgaaaaaaag catttggaat
     8881 tttctcaagt ggattgtttg ggttgtggag gatgtattag cgtgtgtcct agcggatcgc
     8941 ttgattatgc tcctatgcca agagaaagtt tttttaccct ttgtgagttt tataaagata
     9001 aaaaaatttt aattattccc aaaaaaatgt ctttagaaaa tttaaatctt gctttaccaa
     9061 aagatgtttt accctttatg atagagggtg aaaaatggct ttcttctatg cattttttaa
     9121 cgcttttgca aaatagtgga gcaaatttgg ttttttatac ggattttgta tctcgtggta
     9181 gcaatgaggc tattgtactt ttaaatactt tttttgagag aaaatttcaa aaaaaagcta
     9241 tttttgttgc taaagatgaa aaagaattgc aaaatgtttt aaaagagcaa gaattcatac
     9301 aagatttaaa atatgatttt cataataaca ccttaactac aagagaaaat tttgccaaaa
     9361 gaatgcagaa aatgataaaa aatgaagatt ttggcagtat agaaagtggt gaatggttgc
     9421 gttatggtaa ggtagaaatt aatcctaaca cctgtacgct ttgtctttct tgtgtgggtg
     9481 cctgtaatgt aggagcttta atcgctgata aacaagaaaa tgctttgaaa tttaatgcct
     9541 ctctttgcac gacttgtggg tattgtgagt taagttgtgc cgaaaaagat actttaaaat
     9601 tagttcgtag tggaatggag tttagagctt cttattttga atatcaaacc atggcaaaag
     9661 atgagctttt tgcctgtata gaatgtggta aagaatttgc caccaaaaaa gctgtagaaa
     9721 aaatagccaa tttaatgaaa cctaaatttg gtaatgatga aaataaaatc aaaacacttt
     9781 attgctgtgc agattgcaag gcaaaagtga tgataaaagc aatgggtttt gcggggcaaa
     9841 attagatctt aattttgcct tctaattctt ctttatttgt aagtttgcta tcaaatttaa
     9901 caacaagatt tttagagttt ttataaatat ctacaacccc taaattttca ctaaaagtac
     9961 tgaaatttaa aggtgtttct aaaggtagat aaaggttttt aaaatcagct ggatttttta
    10021 agaaaaataa tgctacaagc caaattagag ctaaaattac taaaataata gctaaaagat
    10081 ttaaggcatc tagatgtaaa aatatccctc cgataatacc acctataaaa cttccaccat
    10141 atccaaaagc attaaacaac cctaatgccg cacctttttc atgaacttta caaaattttg
    10201 atgcacaact ttgcataata ggctcatgta aattaaaacc tataaaaaaa atcacaactg
    10261 ctatgataaa aaaatctata gaattactaa aagcaaagaa aagataagaa agtatgaaaa
    10321 aaacaattcc taagagtaaa atttgtttag ctaaacctct tttttcgcct aaacttccag
    10381 caaagcccat agcgataaaa cctgctacca tagaagcgct ataaacaatc caaagtttat
    10441 cagaagcaaa gcctaaatgt tttactagaa taataggaat acttaaaaat gctatactca
    10501 taagcatttt ttgcatgaaa ttagtaagat tcataagggc taaatttttt tgtttaataa
    10561 gatgaaaaaa aggagttttt tcattttcat gagtgatttt attttcttta ggtacaacag
    10621 tataaagtaa aattatacat aaaagagaca aagctacact aagatcaaaa aggctagata
    10681 aaccccattt tacactcatt aaaggagaga ttaccataga agctgcaaaa ctaagtccta
    10741 taaaagaacc cattaccgcc atggctttac cacgattttc ttctgtgata aaatcactta
    10801 tcattgccgt agctactgct ccaatggccc ctgcaccttg gagcattctt cctaaaagca
    10861 tggtgtagat attttccgca aaagagcaga ttaaagagcc tattataaaa ataatcagtc
    10921 caatgagcat ggttttttta cgaccaattt tatcacttaa aatcccaaaa ggcatttgta
    10981 aaatcatttg ggttaaggca taaacaccaa ctaaaagtcc cactaaaaat tcattagcac
    11041 cttcaagttt taaagcataa agacttaaaa ctggcaaaac tataaaaagc ccaaaaaacc
    11101 ttgttccaac tatgaaagat aagggtaaga cattatttag cattatcaat ttcctattaa
    11161 atttgaaatt taaattagga taattttact atgaaatgga ttaagcattg attaacatcg
    11221 ctttatcatt tgatatttaa aagctacgca caaggataaa ttttataaaa tcatattttt
    11281 gttttgatat tattttggag cttttgttat gaagattatc ctagctacga gtaataagca
    11341 taaggtttta gaacttaaag aaattttaaa agattttgaa atttatgctt ttgatgaagt
    11401 tttaacgcct tttgagattg aagaaaatgg aaaaactttt aaagaaaatg ctttgattaa
    11461 agcaagagcg gtttttaatg ctttggatga aaagcaaaaa aaagatttta tcgttttaag
    11521 tgatgatagt ggtatttgtg tagatgtttt agaaggaaat ccaggaattt attctgctcg
    11581 atttagcagt aagggcgatg ataaaagtaa tcgtgataag cttgtaaatg aaatgataaa
    11641 aaaaggtttt aaacaaagta aggcgcatta tgttgctgct attgctatgg taggtttgat
    11701 aggggaattt agtacgcatg gaaccatgca tggaaaagta atagatacag aaaaaggtga
    11761 aaatggtttt ggctatgata gcctttttat tccaaagggt tttgataaaa ccttagccca
    11821 gcttagcgtg gatgagaaga ataacatctc tcatcgtttt aaagctttag agcttgcaaa
    11881 aatcatttta aagattttaa caaaaggata aaaatgaaaa attttttaaa atatatagct
    11941 attattgttt taatatatgc tctttatgtt ggtttggaaa cttggctttc ttagaataaa
    12001 tagtgattaa aaagcttggt aataagaaca aacttccact taaaagcaaa atcattacaa
    12061 aaacggttaa aattccaaaa taaatcgttg gaatgaaatt actactcatc ataacactaa
    12121 aacctaaaac tatgctaatg gtagtataat aaagtgccga acctatacta aggtgagaaa
    12181 tcataatggc ttcttctagg cttttgtttt taatttcttc tctaaaacga taaatataat
    12241 gtatagcatc atcaacgcct atacctatag caatagcagc tatagtaata ctcatcatat
    12301 ccaaaggaat gcctaaaagt cccataagag caaaaaccac acttaaagga ataacattta
    12361 ccaatatagc cgcaactgaa aattttaaat ccctaaaaac aatgataaaa agtatgaaaa
    12421 tagctaaaat tacaaatata agagtatcaa attgcgatga aaaaagactt tggagcatat
    12481 tattataaag caccattatg cctgtgattt gcacttctac tccatcgttt tttacaagct
    12541 cgttgagctg ttttttaaga tctattaaaa acttattacg tcttaaattc ggatcagaat
    12601 caacaatacg catactaaat cttaactcgt tattctctat acttacaaaa ggtgaaagca
    12661 agtcttgttt aaatttagca ggtaaattct catttaaaaa cgcaagagca aaatcatcta
    12721 actcttttcc atcgttgata tttttcccta gggttaaaag actattaaga cttaaaaccg
    12781 agcctacaaa ttctttattt tctaaaaatt catgaacttt ttttgcaatg cgtgtttttt
    12841 tagagtcaaa ccaataagtt tcttgtgtgg ctaaattttc aaattcgctt tcaaaactat
    12901 caagagtatt gcttgtattt tgatcgtttt tattatttgg aaaacgaatg atgacttcta
    12961 aaggcaaggt tccacctagg tttttatcaa taaccaaaag tccttttttg atttcactgc
    13021 gatctttgaa ataattgaca aaagaatttt caactctgag ttttgaaatg cctattaaag
    13081 ctaagattat agcaagaact gaaattccat aaatcatgtg acgcttttta gaatcaagag
    13141 cggttttagc acaaaaggct aaaagattaa atttaaactc ttttttatga tagttttttg
    13201 gttttaaaag aactaagata cttgctaaaa ataaataact aaagataaga gctaaactta
    13261 tacctatact catcataata ccaagtttta tgataggttc gatatttgaa agcattaaag
    13321 aaaaaaatcc tatcatcgtt gtaacaatgg cataaaggct aggatttgct ttggctagta
    13381 aggtttcaag tactatgcgc tcaactttag ctttgggatg attttgggta ctttcgataa
    13441 aatgcgtgat caaatgaaca actacactta aggtgataat taaaaccaaa gcaatgtaat
    13501 ttgatgaaat aactgtgatt tgaaatttta aaagtgcaaa aactccacta gctgcactta
    13561 agcttataaa acaaataaaa agaggtaaaa aaacaaagcg ccatgaacgg aaaaaataat
    13621 aaagtgcaag tcctagtaaa aatacaagag aaacaccata gagcacaaga tcagatttta
    13681 tataagctat catatcatca gcgatcatgc ttacgccacc aaggtagagc gtatctttat
    13741 ttttttcata atttcgaact atgcttttaa tagtatctag actttgtttc gtgataactt
    13801 tttgcttgtc ttgatgtttt tttatagcaa gacgaatttg atctttttct ttttcatcgg
    13861 tagcaagatc gcgtttttct acaagatcat tataaactgt atcaggcttt aagtaaataa
    13921 taagccctgt tacttttcca tcttttgaga tgatattatt tttataaaag gggctattta
    13981 aaatttcatt tcgggctttt gtgcggttta tatcttggct ttctatgttt gggatatttt
    14041 ttaacagttc ttttaaatcc gtattttgtg aactttgaag caaaggggca ttgatgatgc
    14101 taaaaacgcg ctctactaaa ggggcctttt ctaattcttc atgaagtttt tttaatttgg
    14161 ctaaattttc atttgaaaaa ggtttttcat catagggttt gaaggctaaa agtaaaaaat
    14221 tatcactttt ataatgtttt gaaatttctc taaaagtttt taaatctgca tcatcttcta
    14281 aaagtaaact ttcagcactt gcatctacgc taagcttaaa agcaaaaagg cttaaaaaca
    14341 ggcatataaa caaggttcca aaaaaagtac tttttggacg agaaataaaa aactttaaaa
    14401 gctttgcaaa cattattcta tgacaatact ctcaagtttt tgaagtaggg catcaaagcc
    14461 ttggttggct aaaatatctc caaattgtga tctataagtt tgtactatac tcacacctaa
    14521 aacatctaca tcataaacaa gccagttgtt attatcattg taaaatttga aaatgatatt
    14581 tttttcttcc ccatctacta ccatagaagt ggttaaaaaa tagcgttttt cattttttaa
    14641 ctcaccattt ttgaccttta aaacctgatc tttataaaga ctgagtttat cggtaaaact
    14701 ttttttaaga cttgcttcaa aggctgtggt aaatttttct tgttcttttg gatttaattt
    14761 agaataattt ttcgaaagac tgagttttgc catgagttta taatctatta tgctatcaaa
    14821 aagtttaaaa attccatcag cagcttgttt tttgtcttct ttgctatctt gtaaaagttt
    14881 taagcttgca tcaatgtttt tttgcatagt actagaaatt tcatctagct gtaaggcaaa
    14941 agcattaaaa aataaagcca agattaaaaa tatttttttc attattttcc tttatttgct
    15001 aagttcattg cgtctttgct cgtaagcatc acgcaagaat ggatataaat taggcgtgtt
    15061 gtgataaatt tcatcaattt catcaagtct aaaactaagt tcattaccaa atccataagc
    15121 acttatagct atacttgccc aagtaggatc aatgtaagca gtaaaacttg cataccaagt
    15181 tgcaggtaaa gcaagagtat ctctaagatt actagggccg agtataggta agacaatatg
    15241 aaaaccgctt cctacacccc agtgagccaa aacggttcct aagtccgcgg gatgtttttt
    15301 aagacccatt tttgatgcca catccataag tccaccaaag cccataatgg tattggcggt
    15361 aaatctttta aattcttctc ccgcttcttc aaatttaaac tgcaaaatat tgcctacaaa
    15421 acgcaaagga gcaagtaaat tatcaaagaa atttcttacc cctaatctta taaattcagg
    15481 agtaatagtg ttatagcctt taagaacggg acgcaaacca taatcataca aagccacatt
    15541 aaaacttgtc atagctttgt tatatcctga aagtggatcg tttacttgat agt
//
LOCUS       DARGEM010000028        15454 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.028, whole genome shotgun sequence.
ACCESSION   DARGEM010000028 DARGEM010000000
VERSION     DARGEM010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15454
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.028"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            206..478
                     /locus_tag="SFZ78_000681"
     CDS             206..478
                     /locus_tag="SFZ78_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG8211578.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            465..1016
                     /locus_tag="SFZ78_000682"
     CDS             465..1016
                     /locus_tag="SFZ78_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8211579.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANNRFIKLQEKLMGFKSEIKT"
     gene            1000..2283
                     /locus_tag="SFZ78_000683"
     CDS             1000..2283
                     /locus_tag="SFZ78_000683"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG8211580.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPNLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2287..2598
                     /locus_tag="SFZ78_000684"
     CDS             2287..2598
                     /locus_tag="SFZ78_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG8211581.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKI
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2595..3689
                     /locus_tag="SFZ78_000685"
     CDS             2595..3689
                     /locus_tag="SFZ78_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG8211582.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3686..4531
                     /locus_tag="SFZ78_000686"
     CDS             3686..4531
                     /locus_tag="SFZ78_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG8211583.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4541..6439
                     /gene="tkt"
                     /locus_tag="SFZ78_000687"
     CDS             4541..6439
                     /gene="tkt"
                     /locus_tag="SFZ78_000687"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG8211584.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            6441..7550
                     /locus_tag="SFZ78_000688"
     CDS             6441..7550
                     /locus_tag="SFZ78_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211585.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNLRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALIVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            7551..8273
                     /locus_tag="SFZ78_000689"
     CDS             7551..8273
                     /locus_tag="SFZ78_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8211586.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINEKDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8276..9166
                     /locus_tag="SFZ78_000690"
     CDS             8276..9166
                     /locus_tag="SFZ78_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG8211587.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGVKAPVRLLGVEVGSVEEIGIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLIQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9166..9765
                     /locus_tag="SFZ78_000691"
     CDS             9166..9765
                     /locus_tag="SFZ78_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG8211588.1"
                     /translation="MLKQLFYILTFIFILCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            9821..10321
                     /locus_tag="SFZ78_000692"
     CDS             9821..10321
                     /locus_tag="SFZ78_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211589.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYGGVLAYIQDKRDEIKIILSELATAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(10690..11448)
                     /gene="map"
                     /locus_tag="SFZ78_000693"
     CDS             complement(10690..11448)
                     /gene="map"
                     /locus_tag="SFZ78_000693"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG8211590.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYSFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(11458..12201)
                     /locus_tag="SFZ78_000694"
     CDS             complement(11458..12201)
                     /locus_tag="SFZ78_000694"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG8211591.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTANIWLNL"
     gene            complement(12203..12661)
                     /locus_tag="SFZ78_000695"
     CDS             complement(12203..12661)
                     /locus_tag="SFZ78_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8211592.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(12670..13839)
                     /gene="nhaA"
                     /locus_tag="SFZ78_000696"
     CDS             complement(12670..13839)
                     /gene="nhaA"
                     /locus_tag="SFZ78_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8211593.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(13836..14984)
                     /gene="nhaA"
                     /locus_tag="SFZ78_000697"
     CDS             complement(13836..14984)
                     /gene="nhaA"
                     /locus_tag="SFZ78_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8211594.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSAIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(15127..15309)
                     /locus_tag="SFZ78_000698"
     CDS             complement(15127..15309)
                     /locus_tag="SFZ78_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG8211595.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         5760 a         2427 c         2374 g         4893 t
ORIGIN      
        1 atatgaaaaa aacgaagaaa ttctgcaaca atcatttaga aacttaaatg gaatttttgg
       61 taacaaaaac tttacagctt atgatttagg atttagcata caaaataatg acgaaccttt
      121 ttaatttatt taaatttcaa gccttaattt accttttttt aaacacaatc acgctaaagt
      181 atataaaaat ttttaaggat aaattatgat gccttttagt gatgaagagc ttataaatcc
      241 tgttaaagca agtttagaaa agagcttgcc tatgcttgaa cgtgatggcg gagggcttga
      301 atttttagga attaaaaatg ggatcgttta tgtccattta ataggagctt gtaaaggctg
      361 tgcatcgagt ggaacaacgc taaaatacgg tcttgaaagg caacttaaga ttgatattca
      421 tccggaaatc actataatca atttaaacgg cggagcagac gaatttgcaa aattataaaa
      481 aacttggaat tgaacatttt tacaagaaag attttaaaac tgcaaaaatg tatttttcta
      541 tggcttatga aaaacgcaaa aataaacgct tgctaaattt tatctgcctt tgtgatcttg
      601 ctttaaaatc tcctaaagaa gcttctttac tttttgattt ttatatagaa cattacaaaa
      661 tctctagcat tgataaagac ttagaagaaa ttttaagtac aattgaattt aaaaaacagg
      721 aaaacaaaca ggaaaacgaa tttgaagatg ggcatgcgtt aaattatcaa gattttttaa
      781 aaagcgaaga agaacttggc tttcaaaaaa gttttgaaaa tatcattaac agcactaaat
      841 tagttattga taatcgtgat gattttttag attttttgga aaaattactt gataatggct
      901 ataaagatat gactttaaat tacatagaaa atgttatgcc tcatttttgg gcaaataata
      961 gatttatcaa actccaagaa aaactcatgg gatttaaaag tgaaattaaa acttgaaaat
     1021 tcattcatta cagataacac cttagagtgt gaaaaagaat gctttttttt gcaaaccaca
     1081 caaaatgcta aatttcacgc tcaagcctta gaaaaaggtg caaaaatcat tgatgtaaat
     1141 gagtgtaaaa aacttttaaa aatcgatgaa aagattcaaa tcataggaat cacaggaacc
     1201 aatggcaaaa ccacaaccgc agcagcgatt tattctatct tattggattt aggttataag
     1261 tgtgggcttt gtgggacaag aggagctttt atcaacgatg aacaaatcga tgaaaaatcc
     1321 ttaaccacct cccctattct taaaacctta gaatacctac aaatagccac tcaaaaaaaa
     1381 tgtgattttt tcatcatgga agtaagctca cacgcgctcg ttcaaaaccg catcgaaggc
     1441 ttaaattttg ctgctaaaat ttttaccaat atcactcaag atcatttaga ttttcacggt
     1501 acttttgaaa attataaaga agcaaaagaa ctttttttta ccgatgagag tttaaaattt
     1561 atcaacaaag atgctttggc tattaaattt aatgtgcgta atgcttttac ttatggcata
     1621 gaaaatcctg ctttatatca aatcaaagct tattctttag aagaaggcat tagtgctatt
     1681 gtaacaaata aaaatcaaac ttttcacata gactcgccct tgctaggact ttttaatctt
     1741 tacaatcttc tagttgctag tgcttgtgtg aatgaactcg taaagcctaa tttaaaagac
     1801 ttggaaaaag ctatcagtgg atttggcggg gtttgtggca gggtagaaca agtagcaaaa
     1861 ggtgtgattg tagattttgc tcatacgccc gatggcattg aaaaagtgct tgacactctt
     1921 aaaaataaaa aactcatcgt tgtttttgga gcaggtggag atagagataa aaccaaacgc
     1981 cctttaatgg gaaaaatcgt cgaacatttt gcaaaaattg ctatcattac aagtgacaat
     2041 ccacgcagcg aagaaccaaa aaccatcatg gaagaaattt tatcaggctt tactaaaaaa
     2101 gaaaaagttt taatgataga agatagaaaa gaagctataa aaagagcttt agaactaaaa
     2161 gaaaatgacg atttagtcgt tattttaggc aaaggtgatg aaactactca agaaattaaa
     2221 gggataaaat atccttttag tgataaagta gttgttaatg aaattttaaa aaatcaagga
     2281 taatcaatgt ttgaaaatat ggatttttct aaaatgggag aacttttaaa tcaagttcaa
     2341 gaaaaagcaa aaaatataga actagaactt gcaaatcgtg aatttagtgc caaaagtgga
     2401 gcaggacttg ttaaaataag tgccaatgga aagggtgaaa ttatcgatgt tagcattgat
     2461 gattctttac ttgaagataa agaatccttg caaattttac ttatttctgc aattaatgat
     2521 gttttggcta tggttgcaca aaatcgttca agtatggcga atgatgtttt aggcggtttt
     2581 ggaggtatga aattatgaaa aaaattttaa ttatttgcat gctttttact ttgtcttttg
     2641 gtatagaaag acctaaattt gaagattttt tagcaggtta tgaaagaaat aaggcaagca
     2701 tgctcaacta tgaaggaatg ccagcttttg cactcagtga aaatttactt gctgtgttaa
     2761 aacagcctaa tgctaagctt aacaaatatg taaaatacga tccattttta aatttatatc
     2821 ttgtaagaac tgactttagc ctaatcccta ctcctatggg tgatgaagaa aaacttactc
     2881 gtaatgattg ggttggaatt tgggatccta ataaacctta tatagggcat attaagtatt
     2941 tagctcaaaa tattgatgaa aaagatcaac ttgattttaa ttctaaaata ggacttttag
     3001 ggactccatg ctgtgaaatg atggggattg ctttaaataa tagctctttt ataggcaatc
     3061 gctatttaaa acattttatg aaatataacg atgtttattg gggggatatt ggcgttgatt
     3121 ttgttgttcg agaaaataaa atttatgtta acaatgtaag aaaaaatcca caatttttaa
     3181 tcaacgatca agttataagt gttgatggct tgcccgccaa tgatttaaga aaactcaatg
     3241 aaaaaattct ttttgcagat cgcggaagca ctctttattt tcaagtgttg cgtgataata
     3301 tggatttaaa tatttctact gaagtttttg caaaagattt gagcaaattt aaccttcctg
     3361 attctaaacc aaaaccaaaa attacaaatt tcacaagcaa tcttggttta acggttaata
     3421 ctagtcttgt tgtaaccaaa atagatccaa aatcaaaagc atcaaatgca ggatttatgg
     3481 taggagataa aattttacgc gttaataata ttattttaaa taattttaaa gaattacaaa
     3541 atattttaag tgctggtaat gactttagca tcttaattga acgcaaaagt actaaattac
     3601 ctttatcaaa tttcaacaat gaactaggcg gaaatgccaa ctcaggtggc gatggtaaat
     3661 ttcaattttt cataaggctt actaagtgaa tttaaaagaa ctttttatcc atcacttaga
     3721 aaaaaatcta cctaaagttg aaagctttca tccttttttt aatgaagctt tagcacttat
     3781 gttaaaagcg gggggaaagc attttcgcgc acaattgctt ttaagcgtag tacaaagcaa
     3841 taaacctgaa cttttaaatc aagctttaga tgtggcttta gctttagagt ttatccatac
     3901 ttattcactc atacacgatg atttacccgc tatggataat gcagacttta gacgaggaat
     3961 tccaacctta cacaaaagct acgatgaaac tacagccata ttagtgggtg atgctttaaa
     4021 tactgaagct tttttagttc taagtcatgc tcatttaaaa gatgaaatca aaatcaaact
     4081 catcaaaacc cttgccttta atgcaggact taatggaatg gtcataggac aagctattga
     4141 ttgttttttt gaagacaaaa gactgagttt aaatgaactt gagtttttac acacacataa
     4201 aaccgcaaga ttaatcgctg cagctttaaa aatgggttgt gaaatttgcg aacttaacaa
     4261 cgaagaaagc aatcaaattt acaaacttgg tttaaaacta ggactgattt ttcaaatcaa
     4321 tgatgatatt atcgatgtaa ccacaagtca agaacaaagc ggaaagccta ctaacaacga
     4381 tattcataaa aattcttttg tcaatttact tggacttgaa caagccataa aaacaaaaga
     4441 aaatcttctt agtgaatgcg aacaagactt agaaaaactt aatgaaaaac tcgcacaaat
     4501 gatacaaaat ttaataattc aatacttata aaggcaaaaa atggacattc aaattttaca
     4561 agaacaggca aatactctaa gatttttaag tgctgatatg gtgcaaaaag caaactcagg
     4621 acacccaggt gcacctttgg gtttagcaga tattttaagt gttttaagtt atcatttaaa
     4681 acacaatcct aaaaatccca cttggctaaa ccgcgataga cttgtatttt caggcggaca
     4741 tgcaagtgct ttgctttata gttttttaca tttaagcggc tatgacttaa gcttagaaga
     4801 tcttaaaaat ttccgccaac ttcattctaa aacccctgga caccctgaaa tttcaactct
     4861 tggagtagaa atcgctacag gccctttagg acaaggcgtt gccaatgctg taggctttgc
     4921 tatggcagca aaaaaagcac aaaatttgct aggcagtgat ttaatcgatc ataaaattta
     4981 ttgtctttgc ggagatgggg atttacaaga aggcatttct tatgaagctt gttctttagc
     5041 aggacttcac aaacttgata acttcatact tatttatgat agcaacaata tctccataga
     5101 aggcgatgta ggtttagcct ttaacgaaaa tgtaaaaatg cgttttgaag cacaaggatt
     5161 tgaagtttta agtataaatg gacacgatta tgaagaaatc aataaagcct tagaacaagc
     5221 taaaaaatcc acaaaacctt gtcttatcat cgcaaaaaca actatagcaa agggtgcagg
     5281 agagcttgaa ggcagtcata aaagccatgg cgcacctttg ggtgaagaag tgattaaaaa
     5341 agccaaagaa caagcaggtt ttgatccaaa tatcagtttt catatcccac aagcaagcaa
     5401 aatccgcttt gaaagtgctg tagaacttgg ggatttagaa gaagcaaaat ggaaagataa
     5461 gcttgaaaaa agtgctaaaa aagaactttt agaaaggcta ttaaatcctg attttaacaa
     5521 gatagcttat cctgatttta aaggaaaaga tcttgctaca agagatagta atggtgaaat
     5581 tttaaatgtt ttagctaaaa atttagaagg atttttaggt ggaagtgcag acttaggccc
     5641 ttcgaataaa acagaacttc acagtatggg agactttgta gaaggtaaaa atatccattt
     5701 tggtatcaga gaacacgcta tggcagcgat taacaatgct tttgcaagat atggaatttt
     5761 cttaccattt tcggcaactt ttttcatctt tagcgagtac ttaaaacctg ccgcaagaat
     5821 agcagctcta atgaaaatca aacatttttt cattttcaca cacgatagca taggcgtggg
     5881 cgaagatgga ccaacacacc aacctataga acaacttagc acttttagag ctatgccaaa
     5941 ttttttaacc tttagacctg ctgatggggt ggaaaatgtc aaagcttggc aaatagccct
     6001 aaatgctgat attccgagtg cttttctgct ttcacgccaa aaactcaaag ctctaaatga
     6061 acctgttttt ggagatgtaa aaaatggagc gtatttactc aaagaaagca aagaggctaa
     6121 atttacactt ttagcaagtg gaagtgaagt ttggctttgt ttagaaagtg caaacgaact
     6181 tgaaaaacaa ggttttgctt gtaatgttgt ttccatgcct tgttttgaac tttttgaaaa
     6241 acaagataaa gcttatcaag aaagattgtt aaaaggtgaa gttataggtg ttgaagcagc
     6301 acattctaat gaactttata aattttgcca taaagtgtat ggcatagaaa gttttggaga
     6361 aagtggcaaa gacaaagatg tgtttgaaca ctttggattt agcgtttcaa agcttgtaaa
     6421 ttttatcctt agcaaataaa atgaatacaa atttcaaatt tcaaaataac actcttttta
     6481 tctttggaat ttgggataaa acaagcattt ataagttaaa aataaaagat tttttagctt
     6541 tgatccaaag caaggaagtg atttttgatt ttaaagatct aaaagcaatc gataccgctg
     6601 gagtgagatt tttccttgct ttggaaaatg atcttaaaga taaaaatatt aaaatcacca
     6661 aagaaggctt aaatttacgc tttcaaaccc tttttgaact ttgtgaaaaa aactaccaaa
     6721 gactaagcaa aacaaaaaaa tcacataaaa atttcagtga atactttatc gatcttggaa
     6781 aattaagttt agaactttta aaaattttaa gaaaattcat caatttcaca ggagcttttt
     6841 tcacaagtct ttttttatgc cttaaaaatc ctaaaaattt tcgctttatt gcttttttat
     6901 atcatataga aaattctgct tttaaagctt tgcctatagt tattttaacc gctcttttag
     6961 taggagtggt tttagcctat caggctgctt atcaactcgc acaatttgga gccaatattt
     7021 tcatagtgga tttgatggga atttcagcca ctagagaact tgcaccttta atcgctgcca
     7081 tagtaatcgc aggaagaagt gcaagttctt ataccgcaca aattggagtg atgaaaatta
     7141 ctgatgaaat tgcagctatg aatactatgg gttttcgttc ttttgaattt attattattc
     7201 cacgtgtcat ggctttgata gtggctatgc ctttaatcgt tgccattagt gatgcgatca
     7261 gtattatagg tggaatgatg gttgcaaaat taaatcttga tatttctttt gctgaatttt
     7321 taagacgttt tagagaggct gtagatataa aacatatctt tataggactt gcaaaagcac
     7381 ctatttttgg atttttaata ggacttattg cttgttttcg tggttttgag gtaaaaaaca
     7441 ctacacaaag cataggaatt tatacaacaa aaagcgttgt aaatgctatt ttttgggtga
     7501 tagcttttga tgctttattc tctgttgttt taacttctgc aggaatttaa atggttatta
     7561 aagcgcaaaa tatcattaca aaatttggag aaaaaattgt ccatgatggc gtaagttttg
     7621 aaatcaaaaa aaacgaaatt tttggtattt taggaggtag tggaagtgga aaatccgtcc
     7681 ttttaaaaca aatgcttatg cttgaacatt ttgatggtgg agaatatgaa attttaggct
     7741 ataaacttaa aaatatcaac gaaaaagatg cacttgcttt gcgtaaaaaa tggggtgtgg
     7801 tttttcagtt tgctgcactt tttagctttt ttaatgttta tgaaaatatc gccattcctt
     7861 taaaagaata cactcattta gatgaaaata gcatacaaga actggtttta atgaagctaa
     7921 aaatggtagg cttaaacgaa agtgttttaa aacaatttcc aagcgaactt agtggcggta
     7981 tgcaaaaaag agtggcaatt gctagagctt tagcacttga tagtaaattg ctttttttag
     8041 atgaacctac ttcaggactt gaccctcata gtagtcgtga atttgacgat ttggttttag
     8101 agttaaaaaa aagttttgat ctaaatatca ttttggttac acatgataaa gaaagtatga
     8161 aaaatttact cgatcgcttt atcattttag aaaataaaaa agttggattt tgcggcactt
     8221 atgaagaatt acgcttgcaa aatgaacgac tttttaaaag atttatggag taaaagtgga
     8281 aaatagagca aattattttt ttgtaggact ttttgttttt ggagtatttt ttgcaagcct
     8341 tggtttcata ctttggcttg gtggatactc taaagaagaa agttttaagt attatgaaat
     8401 tcacacacaa gaatccgttg caggacttgg cgtaaaagca cccgtaaggc ttttgggcgt
     8461 ggaagtaggt agtgtagaag aaattggcat ttataatcaa gatgaactcg gcgttaacat
     8521 acgcattaag gttaaaaata acacccctat aaaagaagat acttttgcta ctttgcaact
     8581 tcaaggtatt acaggactta aatttgtcca acttcaaggc ggaagtaaaa atagcaaaga
     8641 tctagtatct atccacggaa aacttccggt cattcctttt aaagaaagtt ttttagcgac
     8701 catagacaga caaagtgaac atattttttc tttggttaaa acggccgatg ataaatcaaa
     8761 agaactttta agcgaaaaaa atcttaaaaa tctagaaatc cttttgcaaa atctagcaga
     8821 actaagtgca aatttaaacg ctaattctaa aaatttaagc cttaatcttt caaacgcaag
     8881 tttaaaaata ggaaaaatgg ctgataatat aagccttagt gcgcaaaatt tcaactccag
     8941 tcttaaagac ataaaagaaa gcacaatgat tttaaaaaat ttcataaaaa aagctgatga
     9001 aaaattaaac acttatgatg atattaaagc atctttaatt caaaatttag agctttttaa
     9061 acgagtttta attgaaagca atattctaat agaaaattta caaaacagcc ctgctgattt
     9121 gatttttaaa gaaaccaaac ctaaactagg accaggagaa aaataatgct aaagcaatta
     9181 ttctatattt tgacttttat ttttatatta tgcggatgct ctttaagaca cgaaaccatc
     9241 aataaaaatg aaaatatcat attaaaagac gaaggaatag actcaaatat tttttttaaa
     9301 aaaaccggta aaattcttaa aattcgcaat gcaaatgcac ctttgtattt aaactcgcga
     9361 gctattgttt atatagataa tggttttagc aacaaatacg cacattattt ctggggagat
     9421 ttgccaagca atctttattc ttttttaatt ttatcaaaat ttgaacaaag caatattttt
     9481 acaaccttac tttcttcaac aagctcttta agtgcggatt atgctcttga aagcaggatt
     9541 aactcttttg agcaaattct taataacaat gaaaactacg ctcaaatttc tataagcgta
     9601 aatttcataa atcttgaaaa caatcaaata atagctcata aaattttcaa taccaaagaa
     9661 aaaatagaaa aaaaagatat ccgctctact tataatgctt ttcaaaaagc cttgaataaa
     9721 attggcaatg agattatttt ttgggtaaat tctaacttat cctaatttag gaacactttt
     9781 tgctttttaa atatttagca atatttttga aaggtaaaca atgaaaagtg atttagatat
     9841 atttaaaaaa cacttaggtg aaattcaggg cgtgaatgaa tttaaagcaa atcaaatttg
     9901 ctctcaaatc aatgatgcaa atgattttat aggagcactt caagtgcttg atatgtcttt
     9961 aaaaaaaata gaaaaaagca ttctagaaag aatagatgaa aattcagatg atatgcaaaa
    10021 aagaactctt gatgccacag cgtcacaact tatacaaaac tgctctttca tgggaacagc
    10081 tctttttgga aatattttca atgtttatgt tggtaaaaaa ctttttgaat ttgaaattgc
    10141 taatccactt ttaattcttc aaacaagtaa ttacggaggt gtattggcct atatacaaga
    10201 taaaagagat gaaataaaaa tcattctatc agaattagca accgcaatta ccatgggcga
    10261 aactatggat aatgctggaa tttataactc tacaatggat tttaaaaatt tatttaaata
    10321 agaatagtaa tcgtttgttc tctttaagca aatataatat attttagctt aaagagattt
    10381 tccaaactct aaaagagagt taggctacga ataaaaaggg gagggaaata gcctaaccca
    10441 aaagagatct taaaagatct ctttaaacca aaatacatat ttagataatt taacaatttt
    10501 tattaaatta tctaaaccat atttatgttt tagtttaata cgatgtgaca ttttattcta
    10561 aaaacactta atctgctata aaaatatcat ttagtaactt aacttattaa agaatattac
    10621 tacaatatta ttaaaaaatt ttaaattttt aggattttaa gaaaaaaata ttatttttat
    10681 aatttaatat catatcatag aaagaatttc agcacgccca ttaatcacgg caacacaatg
    10741 ttcataatga gccgcattca gcccatcaat acttccagca tcccattttc cattataatg
    10801 ctttggtgtt ccatcttttt ggcatatcat aggctctatg caaaacacca ttccattttt
    10861 aattttaggg ccactttttg cactcgcacc tttttctaaa tagtttaaaa tttcaggctc
    10921 tccatggggc tttcgtccta taccatgccc gcaatatcca cgaagcggga caaaacctct
    10981 tgcatggata aattcgccta aagcagctga aagttcctta aaacgcattc catcacgaat
    11041 aatatctata gcatgatata acgcgtcttt agcacaagag attaaagctt tatcagcggg
    11101 tgaaacttct cctatagcaa tagttcttgc tgcatcccca taatacccat caatcaaact
    11161 tcccacatca agacctaaaa tatcaccctc tttgataatt ttatcatctg gaattccatg
    11221 gatacaaact tgatttaaag atgtgcaaat ggcacctgga aaactataaa gtcccttaaa
    11281 tgatggcttg gcgccaaggc ttaaaatata atcttctgcc attttatcga tttgttttaa
    11341 gctcattcct attttaattt cattctctaa aaaatttaaa gtttttgcta caatttgatt
    11401 tgctattctt aatttttcta tttcatctgg ttttttcaat tctatcattt tatttcctta
    11461 taaatttagc caaatgttag cagtattttt taaagattca acatcgcttg aagcataaaa
    11521 atgtaatttt gctttatgat ttttcaaatc tatattttct ctttctttaa gaaattcaac
    11581 tatagcatct cctgaatgaa ttaattttgt tttatcacca aaatacttac ttaaagaacg
    11641 acctagtaaa gggaaatgag tgcaagcgag tatcaaagca tctggagttg tgatattttt
    11701 aaaataatac tccatagcac tttgcaaaaa atctccttca aaaatacctt cttcaaccat
    11761 aggcacaaaa agtcctgtag ctaaagcatt tatatttgta tatccttggg ataataaacg
    11821 cttttggtat tcttctgatt taatggttgc ttttgttgca atgactaaaa tttctttatt
    11881 tttatcatgc aaagctttta tcgttgcttc aacccctgca tcaattacac catatactgg
    11941 aaaatgtgct tttgtcctta aagcatctaa agcataagca ctagcagtat tacatgcaat
    12001 gataagcata tcaatttgaa attgttcaaa aaattccaat gcttcaagac agaactttat
    12061 aatagtatct ttatctttta ctccataagg aactcttgcg gtatctccat aatagataat
    12121 ttcatcaaaa agtctagctt cataaagaga ttttaaaacg ctaagccccc ctaccccgct
    12181 atcaaataca cctattttca ctttaatacc ttcttgctcc tatataacga gccttccaat
    12241 aagaactatt tagctcgact tcttttactc cacctttagt agataaatgt ataaattttc
    12301 ccttgctcat ataaatacca acatgcatac catttggccc tctacctgtc ttaaaaaata
    12361 ccaaatctcc tgtttgcaat tttgatttag aaacttttct tccagaacct aattgagttt
    12421 ttgtagtgcg aggtatgcgt atattaagct gagctaatgc gctctgtgta aatcctgaac
    12481 aatcagcacc ttttttacta gttccaccta aaacataagg ggtttttttc cattcatttg
    12541 caataacctt gagccttgct tctttatttg tgttgtaact aggacgatag tttagattct
    12601 gataaaaact acatccactt ataaaaaata taatcgtaat aataaaaaaa atatgcctca
    12661 tcaatcccct taagatcgag tagtaaagaa tttaagataa ataaaacccc aaatcccaga
    12721 acaaaatgag gctataagaa tagctaagtt atctgcataa ttaaaaatat cactaacttc
    12781 atacgccaat ccatcaataa acaaactcat tgtaaaacca attcctgtaa gtatgcaaac
    12841 cccataaagt tgtttcaaat ttgaaccttg gggcaaagct gcaaatttaa agcggattgc
    12901 caaataagaa aacaaaaata cacccacttg tttacccaca aaaagcccca agaaaatacc
    12961 tatacttaca cctgaaaaaa ttgctcctat atcgatattg gataaattta ccccagcgtt
    13021 agcaaaagca aataaaggca agataacaaa agcgagccaa aattttagac tttcatagat
    13081 ttcttctaaa aatgcttctc catttttagt ttgcatcggt ataaaaaatg ctgttatgat
    13141 tccagctaaa gttgcatgca caccactttt taaaacacta atccaaagaa taactgagca
    13201 aataaaataa aaagactttc ttgttattcc taaaatattt aaaacaagca ttgccaaaat
    13261 agcaattcct gcaacgacaa aagcagctat tgataatttt gtcgtataaa aaatagctat
    13321 aattaaaata gcacccacat catcaaaaat agccaaagaa agtaagaaaa tttttaaact
    13381 tgatggaata tgcttgccac acatcattaa aatcgctaag gcaaacgctg tatctgtagc
    13441 tgtaggtata gcccaacctt ttaaagtata agcatctcct atatttacca aagcaaacaa
    13501 catcgcaggt ataagtatac cccctaaagc agccataaaa ggtaaaacaa tatttttagg
    13561 atttttaaaa tccccatgca aaaattcctt cttaagctca agccctatag caaagaaaaa
    13621 tatagatata agcccatcat ttatccaaag taaaaaaggc ttgttaagct caaattcacc
    13681 tacactaaat ccgactttta aatttagaaa ttctcgataa tgttcgctaa aagacccgtt
    13741 ttgcacaagc aaagcaagca aagtacaaac tataagtaaa acgccgccaa aagcctcatt
    13801 taaaactaaa gtttttaatt tatgtactat attattcatt taacaatctt aagataaata
    13861 aaaccaacaa tggcacttaa aaaactagct actaaaatag caagtttatc cgcatattca
    13921 aaaatatcac tatttttata agccaaacca tcaataaaca agctcatcgt aaaaccgatg
    13981 cctgttaaaa tacatatacc ataaaatttt ccatatttaa tattttcagg taattttgca
    14041 agtttaagtt tgatagcaat aaaacaaaaa gtgaaaacac ctaattgttt tcctaaaaat
    14101 agtcctaaaa taatcccaag acttacagga gaaaatactg aaccaagatg catatctcta
    14161 atatcaattc cagcattggc aaaagcaaat aaaggtaaaa taaaataaac tacccaagga
    14221 tttaaatcct taagaacttc atgtaaataa ggttttttat tttttgtatc aagaggtata
    14281 aacaaagaaa tgatcacacc agccaaagtt gcatgtactc cacttttaag catagctatc
    14341 cacaacacaa cacctaccaa cacgtacaaa gaaagatggg tgatgtgata ataatttaac
    14401 aaaagcagag caaatataca aaacaaacaa ataataattg ctaaagctga aagctgatct
    14461 gtataaaaca aagcaataat aacaatagca cccaaatcat caaaaatagc taaagagagt
    14521 aaaaaaagtt ttaaacttgt aggaatttta tttcccaaaa gcattaaaat acccactgca
    14581 aaagctatat cagttgctgt aggtattgcc caacctttca tagcaaaatc atgagaataa
    14641 ttaatagcaa taaaaattaa agccggagta atcatacccc ctaaagctcc gaatataggt
    14701 aaagatacag ctcttatatt tttaagttgc ccacgtaaaa tttcatattt taactcaagc
    14761 cctatacata gaaaaaatat agctatcaaa ccatcattta tccataaatc caacgacttt
    14821 gaaatttgaa aatgatcaaa tcctactgta aaattagcat gaaaaaaatc tgtataaata
    14881 gcacttaaag aagaattttt acataataaa gctaaaaatg taaaaaatat aagcaaaata
    14941 ccagggaaag tttcacttaa aaccatcttc tttatcattt gcatccttgc tcctaagtaa
    15001 atatttgtaa aaatttaata cgataaataa aatggtaaaa ttataacgaa aaaatactaa
    15061 agaaataatt atttaaaaaa acaagcccaa gataccaaaa agttcttaag cttgttctta
    15121 agatatttaa gcgtaaatat ccaaaccact agagctagaa gcttgtggag cggaggcttg
    15181 agagacacct tccatacctt cgatgagttc attcatcaat gcctcgtttg tgtccataga
    15241 ttttttcaaa actgaagtat taacagcagt cattaaatta acattaccca tagaaacatc
    15301 tgaaaccata catcctcctt ttagattgag tcttaagact ttatttaaat cggatgatat
    15361 ttttaaaact taatattttt tactaaactt tttaaaattt ttcaagggaa ctaatatctg
    15421 aaattaaaaa tcataaattt tttaagataa aatc
//
LOCUS       DARGEM010000029        15380 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.029, whole genome shotgun sequence.
ACCESSION   DARGEM010000029 DARGEM010000000
VERSION     DARGEM010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.029"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..555
                     /gene="kpsS"
                     /locus_tag="SFZ78_000699"
     CDS             <1..555
                     /gene="kpsS"
                     /locus_tag="SFZ78_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8211596.1"
                     /translation="KKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETIL
                     SFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKA
                     LGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVC
                     NFKKYLLQTNQFNGNFYKNFFLDK"
     gene            628..1749
                     /locus_tag="SFZ78_000700"
     CDS             628..1749
                     /locus_tag="SFZ78_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG8211597.1"
                     /translation="MDREVFYIAGCDPKSYRFYYDLFKKNLKDYSHAFSIKVDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            1746..3107
                     /locus_tag="SFZ78_000701"
     CDS             1746..3107
                     /locus_tag="SFZ78_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG8211598.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDKVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFGKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVVEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            3104..3523
                     /locus_tag="SFZ78_000702"
     CDS             3104..3523
                     /locus_tag="SFZ78_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211599.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(3524..3871)
                     /locus_tag="SFZ78_000703"
     CDS             complement(3524..3871)
                     /locus_tag="SFZ78_000703"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG8211600.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(3871..4407)
                     /gene="fliL"
                     /locus_tag="SFZ78_000704"
     CDS             complement(3871..4407)
                     /gene="fliL"
                     /locus_tag="SFZ78_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG8211601.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            4530..5900
                     /gene="pgmL"
                     /locus_tag="SFZ78_000705"
     CDS             4530..5900
                     /gene="pgmL"
                     /locus_tag="SFZ78_000705"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG8211602.1"
                     /translation="MLDVIFREYDIRGLYGKELNKKSVKAIGFCLGKTMLNKGCKNVS
                     VGYDARYSANELFNYLISGLNKAGIKIYDIGLAPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGVAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            5947..6324
                     /locus_tag="SFZ78_000706"
     CDS             5947..6324
                     /locus_tag="SFZ78_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEG8211603.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(6355..6681)
                     /gene="rsfS"
                     /locus_tag="SFZ78_000707"
     CDS             complement(6355..6681)
                     /gene="rsfS"
                     /locus_tag="SFZ78_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG8211604.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(6709..7254)
                     /gene="nadD"
                     /locus_tag="SFZ78_000708"
     CDS             complement(6709..7254)
                     /gene="nadD"
                     /locus_tag="SFZ78_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG8211605.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            7314..8312
                     /gene="gap"
                     /locus_tag="SFZ78_000709"
     CDS             7314..8312
                     /gene="gap"
                     /locus_tag="SFZ78_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG8211606.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRQAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIMDDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            8315..9517
                     /locus_tag="SFZ78_000710"
     CDS             8315..9517
                     /locus_tag="SFZ78_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG8211607.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            9514..10185
                     /locus_tag="SFZ78_000711"
     CDS             9514..10185
                     /locus_tag="SFZ78_000711"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG8211608.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEELIGAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLVSLTKAPLLYGGSVNENNIKEILSVKYCGGVLIGSAALKVENFI
                     KLIKG"
     gene            10189..11013
                     /gene="fabI"
                     /locus_tag="SFZ78_000712"
     CDS             10189..11013
                     /gene="fabI"
                     /locus_tag="SFZ78_000712"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG8211609.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGLA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            11017..12510
                     /locus_tag="SFZ78_000713"
     CDS             11017..12510
                     /locus_tag="SFZ78_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8211610.1"
                     /translation="MGKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAVKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(12507..14000)
                     /gene="feoB"
                     /locus_tag="SFZ78_000714"
                     /pseudo
     CDS             complement(12507..14000)
                     /gene="feoB"
                     /locus_tag="SFZ78_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
     gene            complement(14552..15226)
                     /locus_tag="SFZ78_000715"
     CDS             complement(14552..15226)
                     /locus_tag="SFZ78_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEG8211611.1"
                     /translation="MYKTTDILNRVYAILNITDDKEFCGIYEIKPNTLSTWRTRNTIP
                     YELLLKISKEQNISLDSIFFGKMRINDDNLQLRYYTDVAAAAGYGAINSKLEYTEIVI
                     SKKFACEALGLPPLTRLDIIKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVIN
                     LDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIDQISCAEIIGVVCKAISIKTFEN
                     AIIKYE"
BASE COUNT         5296 a         2073 c         2713 g         5298 t
ORIGIN      
        1 aaaaaactaa atgaaaagat ttataattta gaaaaaaagt actttttggc gattttacaa
       61 gtttatagcg atacgcaaat taaatatcat tacaaaaaaa gcatagagca ctttatagag
      121 gaaaccatac tttcttttgc aaaccatgca agagctaaat cttatctagt ttttaaacac
      181 catcccatgg ataggggcta taagaattat tctaaactca taaatgattt aagtcaaaaa
      241 tatcatgtag aaggaagggt tttatatgtt catgataccc acttgccagt tcttttaaga
      301 aaggctttgg gttgtattac tataaattca acagtaggcc ttagtgctat tttagaaggc
      361 tgtccgacta aggtttgtgg caatgctttt tatgattttg aaggcttatc ttatccaaaa
      421 aaacttcaat ttttttggcg tgaagctcat gcttataaac ccaatcctgt tttggtatgt
      481 aattttaaaa aatatctttt acaaactaat caattcaacg gcaattttta taaaaatttc
      541 tttttagaca aataagacta aaaagctttg attaagagag cttttaaagc aaagttgtta
      601 taattaaaag caaaaagaaa ttattgtatg gatagggaag tattttatat agcaggatgt
      661 gatcctaaaa gttatagatt ttattatgat ttatttaaaa aaaacctaaa agattattct
      721 catgctttta gcattaaagt tgatttaagt aaaattgaaa aaaatgagca atttcctttt
      781 tttcaaattt cttgcgaagg agtacaaact aaatatcatt ttttaacatg gaatgatatt
      841 gttaagaaaa attggtcaga aaattataaa gatgctttgg cagattgtta tagttttttt
      901 agaatttata ctatcacagg gctttttatc aaatttggca aagagtcgat ttatcaactt
      961 atcacaggtt attatccttt tttttatgtg ttattttctt tactattttc tttggttttg
     1021 gcttttggaa gttttgcttt tttgcaaaat tatatgcatt tttctttagc tatcatcata
     1081 ggatgttttt taggattttt actaaatcat tttttattta aattaggtaa gaaattagct
     1141 gtattttgga tagcaagaat ttgtgctttt tgtgctactt ggcaagataa aaaaacaggc
     1201 actatgcaag aaagaatcaa gctttttgca aataccatag tagataagct aaaacaaaat
     1261 gaaaataaac aagattatga acttgtttta gtagcacata gtgttggaac tatagtttgt
     1321 atagaagttt tggagtgtat tttaagacaa aatttagatt tatctttact tcgtaaatta
     1381 aaaattctta ctttaggaga atgcattcct ttagtgagtt atcaaaaaaa agcggatgaa
     1441 tttagaaaga agcttgaatt tgtttcaagg tttgatttaa aatggtatga ttacacatcg
     1501 attattgatg gagcatgttt tcctcaagtg gattttttcc gcacgagtgg cgtaaatgct
     1561 aaatttacac ctccattttt aagtgctaaa tttcacactt tatatgaaaa acatgagtat
     1621 aaaaaaataa aaagagataa aaacaaagcg cactttttat atctttatag tattagtgtt
     1681 aaaggtgatt atgatttttt ttctttcatc ataatgccta aatttttaga agaaaaggta
     1741 aaaatatgag tgaatgcccc ttttttccaa aaccttataa aaataaagct tctacgctct
     1801 taactttttt gttaaagcgt agatcttggc ttgacgggct ttatgagcgt agttataaaa
     1861 tgcaaacagg ctatgtgaag atgccaaatt ttgatcttta tgtcataaat gatactaaag
     1921 aagttaaaag aatgatggtt gataaggtta gagaatttcc taaaagtgca tttttacatg
     1981 agcttttaag tccgctttta ggggagagta tttttactac aaatggtgaa gtttggaaaa
     2041 aacaaagaga acttttgcgt ccaagttttg aaatgactcg tatcaataaa gtgtttaatc
     2101 ttatgagtga agctgtggca gatatgatgg atcgttttgg caagtatcca aatcatgctg
     2161 ttatcgaagt agatgaagct atgactttta ttaccgctga tgtgattttt cgcaccatta
     2221 tgtcttcaaa actcgatgag ggaaaaggta aaaaaatctt aaacgccttt gtgacttttc
     2281 aagagcaaag cgtgcataca gccatgcgtc gtatgtttcg ttttccaaaa tggctttctt
     2341 atgtgctagg agatcgtaag cgtgctaaag ccggagatgt gatcagacag gttttaagtg
     2401 atatcataaa accaagatat gatatggcag ataatgcaga atttgaagat attttaggat
     2461 ctttgctttt agtagtggat gctgatacaa ataagcgttt ttcttttgag gaaattttag
     2521 atcaagtggc tatgcttttt ttagcaggac atgaaaccac agcaagttct ttgacatgga
     2581 cgctttattt gcttagtctt tatcctaagg agcaagaaaa agcttacgag gagattactc
     2641 aggttttaca gggtggagtc gttgaaattt cgcatctaag acagtttaaa tacttaacaa
     2701 atatttttaa agaatcttta agactttatc ctcctgttgg gttttttgca agagaggcaa
     2761 aaaaagatac ccaagttaga gataagctta ttaaaaaagg ttctggggtg gtgattgctc
     2821 cttggctgat acacagacat gaagaatttt ggacaaatcc gcatggattt aatccttctc
     2881 gttttgaagg agagtacaaa aaagatgctt atttgccttt tggggtaggg gaaagaattt
     2941 gtataggaca aggttttgct atgcaagaag cgattttgat tttggctaat attttaaaaa
     3001 cttacaaact agaacttgaa gaaggttttg tacctgatgt agtagggcgt ttaacagtgc
     3061 gttcggctaa tggtatgagg ataaaattta gcaaaagaaa gctatgaaaa gagttagaac
     3121 taaaattcgc gccaattttc gtcgtcgtgt aaaacgcact ttaaaaggaa gcttaaaaga
     3181 aaaattagca gggactattc tgctttgtgc aatagtacct ttagcagttt taggatatct
     3241 ttttatcgtg attataggaa ttttttttaa taccgcacga gcaagacagg gtgttagagc
     3301 cttagatcat tttgtaaatg caagcttgtt taatggctat gcttgggaga gcgtttcttc
     3361 tcatgcgtgg cgtgaaagaa atcgcaaaaa atgggcaagg attgttataa aaatcacaga
     3421 tttttttcaa aaagatcatt gtaaaagagc aaacaaaaga gaacaacctg tggtggattt
     3481 catactttca agaaatttag acaagcaaac tataggaaaa taatcaaact acagccacta
     3541 tggctatagc aaaaccatta tcatgagaaa tacttaggga agtttgagtg atattaaaat
     3601 cttttgtaat tttttgagaa tattttaatt taggcgcgtt tttttcatct tttgatattt
     3661 caatatcaaa aaaactgcat aattcacaaa ttccaacacc caaagccttg ctagcggctt
     3721 ctttagcagc ccaaagacct gctagagttg ctggattttt aatgagtatt tgttcttttg
     3781 ggcttagaaa tttatccaaa aaatttttgc catgtctaga atgaattttt tctattctag
     3841 aaatggcgat gatatcacag cctacacgca ttaagaaact acaaaatccg taaaataaac
     3901 atttttaata aagccatcgg ttaaaatttc attgattttt ccaactagct catcttttaa
     3961 acgttctttg cctttttgtg tacttacttc ttcaaaagtt ttagctgtta atgtacgaat
     4021 aataatatca cgaatgactg ggactttttt atcaagttca ggttttaaaa gttcgctatt
     4081 ttgttctagt tctatagtgc attttacata tcttgagccg ctatcgctaa gtaaatttag
     4141 ggtaaaagga tcaagtggat acataggacc tatattagca aaatcactac ctcgctgagc
     4201 aggagctgaa actttaggtt tatcggcttt tgcctcttct tttggagctt ctttgacttc
     4261 actttcatca cttgaactgc ttgaaataag ccaagcaatt actcccataa tactaagaag
     4321 taaaacaaaa agtaaaataa caataataat tacaagtgaa ccgccttttt tctttttcgt
     4381 ttcttcgttt tctaattctt catccataaa ttttccttca tttagtgaaa ttaatgtaaa
     4441 attgtagcaa aaatttcttt tctatccaaa tttgctttag aaaaacgata aattttaggt
     4501 taaagaagag atgaatttga aggaaaaaaa tgttagatgt gatttttagg gaatatgata
     4561 taagagggct ttatggcaaa gaactaaata aaaaaagtgt taaggctata ggtttttgct
     4621 tgggaaaaac catgctaaat aaaggctgta aaaatgtaag cgtgggctat gatgcaagat
     4681 atagtgcaaa tgagcttttt aattatctaa ttagcggact taacaaagcg ggaataaaaa
     4741 tctatgatat agggcttgcg ccaactccat tgggatattt tagtctttat gagggcttga
     4801 aatttgatgc aaatgttatg ataacaggct ctcataaccc aaaagattat aatggtttta
     4861 aaattactat taataaagaa agtttttttg gtgtagaatt aaaagagttt tcaaaagaag
     4921 tttataagca tttagatgat gatattgaag aaaatttaga agtagaaaaa tacgatattt
     4981 taaaccttta tgtgaaattt atgtgcgagc aatttagctt tttaaaggat tttaattata
     5041 aatttggtgt tgattgcaca aatggtgtgg ctggagtggt gatagagcct ttaatcaagg
     5101 ctttaaattt aaaagctcat gtaatgtttg cagagcctga tggacagttt ccaaaccatg
     5161 ctccagatcc tacagaagaa gaaaacttaa gtgcgattag agaattttta aatcaaaatc
     5221 aagattattc tttagctttt gcttttgatg gggatgctga tagaatggtt gctttgagta
     5281 aaactcatgt attttgtggg gatgagcttt gttatttgtt tgctaaagat atccctaatc
     5341 cacgcatttt aggtgaggta aaatgttcta aaaatctttt tgatgaagtg gctaaatttg
     5401 gaactatttt tatgggaaaa acaggacatt ctaatatcaa aaaaatgatg aaagaaaaag
     5461 atattgattt agctgctgaa gtgagtgggc atattttctt taaacataga tattttggtt
     5521 atgatgatgg aatttatgca tttttaagag ccttggagct tgtttataaa ggttttgatc
     5581 tagaaagtat gattaaagct ttaccaaaac tttatactac acctgaaatt aaaattcctg
     5641 taaatgaaga agaaaaattc aaacttgtgg aagaatttca aaaagagatt gaaaaaggag
     5701 ctttaaaagg tgttaaaagt ctttgtgaaa ttgatggagc taggatagat tttggcgatg
     5761 gatgggcttt acttcgtgca tctaatacca gcccttatct tatcacacgc tttgaggcaa
     5821 catctttaga aagagcaaaa gagcttgaaa gtatggtatt tactttgttt aatgatataa
     5881 aagctagatt taagaattga tgagataata ttccgcgatt taatttattt taaaaaggaa
     5941 ttaaaaatga aaaaaatact tattctactt acactatgtg cttttgcttt tggtgcaagt
     6001 gaatgtgata gaaaaatcga tcgtatcaat aaagaaatca gtttttctaa agcgcataat
     6061 gatacagcta gaactttaag cttagagctt gctttaaaac aagtacaaaa tgattgtgct
     6121 aaagatccta tgttttatga taaaaagtta gaagctaaaa aacttaaaga acaagaagtg
     6181 gaaaaaatcg aaaaagaact tgatgccttg aaagaacaaa aagattatat gagtaaggct
     6241 gagtataaag ctaaaaaaga agctttaaaa gaacaaaaag agaaaattaa aaaagaaatt
     6301 aaagaatata ttgataatct ctaaaaatta aaaggctaat taaatttagc ttttttaaac
     6361 cctacctttt ttaaggtttt ctagtaattc ttctatatta taaattcctc tgtgttctgg
     6421 tgttaaaaga tggattaaaa tatcgccaag atcaatcacg ctccattctt cgctactatc
     6481 tatgtttaaa aattcctcac ctttggcttt aagttgtgtt ttaagctcat cgatcaagga
     6541 tagagcgtgt ctttctccta aagtagctgc aataatgaca tattttacaa agtattcttg
     6601 ctcgctcatg tcaatggttt tgatattttc agcttttttt tcatctaaaa ttttaacgat
     6661 taaatctatt ctttcttgca ttattgtcct ttaatttttg aaattgtatc aatttttttg
     6721 taatttttca taatattttt ttacttcatc tttaatttct tcacaaacct catttgtatt
     6781 taaagtgtcg cgtatgaaag aagaagcgat ttttttattg gtttttaaat ctttgaaatt
     6841 cttaggaatt cctatatcat tgcgattggc aataacaaat tctactaaag aattgagttt
     6901 ttcaaaatca tgccaaagat gaagtttttc taaatgatct gcgccaatta aaagataaaa
     6961 tttactagga ttataaagct tataaagata cttaacactt tctatgctag gaacagggcg
     7021 tttttgcctg atttcaaaat cgcaaatttc aacttttggc aaatgtcccc aaagtttttt
     7081 aacccataag aatctttgct tttcatcagc actaaaactt tgtttaaaag gattgatata
     7141 agtaggcata ataataagtt tatcaatatc taatttttcc aaagcctcta aaacaacgct
     7201 attatgacca ttatgcggtg gatcaaaact gccaccaaaa agtgctatct tcattaaaat
     7261 tttaaccttt tttttgtaga atattagcat tatattttgc aaaaggaaat taaatggctg
     7321 taaaagttgc tataaatggt tttggacgca taggcagatg tgttgcaaga atcatcttag
     7381 aaagaaatga tattgagctt gtggcgataa atgatactac ggatattgaa cttacaaaat
     7441 acctttttaa atacgataca gtacatggtg aatttaaagg cagtgttgat agtgaaggcg
     7501 atgatttagt ggtaaatggt aaaaaaatca aagtatttaa aagtcgcaat gtaaaagatc
     7561 ttgactttgc aaaacacggc gcacaaattg ttttagagtg tacaggagcg catttaacta
     7621 tggcaaaatg tcaagaattt atagatatgg gagtgcaaaa agtgatcatg agtgctcctg
     7681 caaaagatga tacacctact tatgttttag gagtaaattc agaactttac aagggtgaaa
     7741 gcattatttc taatgcaagt tgtacaacaa attgtttagg tcctgtttgt cgtgttttac
     7801 aagataattt tggtatagaa aaaggactta tgacaacaat acatgcttat acaaatggac
     7861 aaagtattat tgatgctaag gccaaagata aacgccgttc tcgtgccgca gcgcaaaata
     7921 tcattccaac ttctacaggc gcagcaaaag ctatgaaact tgttatgcct gaacttaatg
     7981 gcaagcttca cggacaaagt atgcgtgtgc cagtgattga tgtatcaagc gtggatttaa
     8041 ctgcgcagct aagccgtaaa gtcagcaaag atgaaatcaa tgaagctttt agacaagctg
     8101 cagctacaaa tttaaaaggc attttaatgg tggatgatga tgaaagagtt tcaagcgatt
     8161 ttatcacttg ttcttatgga gccattgtag caagtgattt aactcaagtg attatggatg
     8221 attttatcaa ggtaattgct tggtatgata atgaatgggg ctattcaagt cgtctggtag
     8281 atatggcagt atatattgca aataaggctt aatcatgagt gatattattt ctataaaaga
     8341 cattgattta gctaagaaaa aagtttttat aagatgtgat tttaatgttc ctcaagatga
     8401 ttttttaaat atcactgatg atagacgcat aagatcagct attcctacga taagatattg
     8461 tttggataat ggttgtagtg tgattttagc ctctcattta gggcgtccaa aagaaattag
     8521 ttccaagtat tctttagaac ctgttgctaa gcgtcttgct agacttttag ataaagaaat
     8581 tattatggca aaagatgtta tcggcgaaga tgcaaaaacc aaagctatga atttaaaagc
     8641 aggtgaaatt ttacttcttg aaaatttacg ttttgaaaaa ggcgaaacta aaaatgatga
     8701 aaatttagcc aaagaacttg cttctatggt tcaagtttat atcaatgatg cttttggagt
     8761 atgccataga gcacattcta gcgtggaggc tattactaaa ttctttgatg aaaaacacaa
     8821 aggtgcagga tttttactcc aaaaagaaat tgattttgca agcaatctta tcaaacatcc
     8881 agcacgtcct tttgtcgctg ttgttggagg ttcaaaggta agtggaaaac ttcaagcatt
     8941 gacaaattta ttaccaaagg tagataaatt aatcataggc ggaggtatgg catttacttt
     9001 tttaaaagcc ttaggttatg atataggaaa ttcactttta gaagaagaac ttttagaaga
     9061 agctaataaa attcttacca agggtaaaaa tttaggagtg aaaatttatc ttccagtaga
     9121 cgttgtagcc gctcctgcgt gctcacaaga tgcgccgatg aaatttgttc cagcgcaaga
     9181 aattccaaat ggttggatgg gtttagatat aggacctgca agtgtgagac tttttaaaga
     9241 ggtgatttct gatgcgcaaa cgatttggtg gaatggacct atgggtgttt ttgaaattga
     9301 taaattttca aaaggcagta ttaaaatgag tcattatatc agcgaaggac atgcaacttc
     9361 tgttgttgga ggcggtgata cggctgatgt ggttgcgcgc gcaggcgatg cagatgagat
     9421 gacttttatt tctactggag gtggtgcttc tcttgagctt atagaaggca aagaacttcc
     9481 aggtgtaaaa gctttaagat ctaaggaaaa tgaatgatct ttgctgcaaa tttaaaatgc
     9541 aatcacacaa gagcaagttt taaaatttat gctgaaattt taaataaaac tatgggagca
     9601 aaatgtgatg atattatcgt tttcccacct agtgtagcat ttttagaaaa tgaaaataac
     9661 ttcatacaag gagcccaaaa tttttatcct tgtgttaatg gtgcttttac aggcgagctt
     9721 ggaaaagagc atttggacga atttgggatc aaatgtgttt taatcgggca ttctgaaaga
     9781 agagctttag gagatgaaga gcttattgga gctaaatttg attttgctaa agagcatggt
     9841 tataaaattg ttttttgtat aggtgaaaat ttagatacaa aaaattcagg caagacttta
     9901 gagtttttaa aaaaacaact tgaaattatt gatttaaatt atgaaagact cattatcgct
     9961 tatgagccta tttattctat aggaacggga gtgagtgcac aaagtacaga tatcgctaaa
    10021 gtgcttgaat ttttagtgag tttaaccaag gcgcctttgc tttatggtgg aagcgtgaat
    10081 gaaaataata ttaaagaaat tctaagtgta aaatattgtg gtggagtttt gataggctct
    10141 gcagctttaa aagtagaaaa ttttataaaa ttaatcaaag gataaaagat gattatgaag
    10201 ggtaaaaaag gccttattgt aggggttgcg aataataaat ctatcgctta tggcatagca
    10261 aaagcatgtt ttgatcaagg agccgagctt gcttttactt ttttaaatga tgctttaaaa
    10321 aaacgcgtag aacctatagc acaagagttt aattctaatt ttgtttatga gcttgatgta
    10381 aataataacg agcatttaga ttctatcgct gaaaaaatca aaaaagattt aggtgagatt
    10441 gattttgtag tacatgcggt tgcttttgct ccaaaagaag ctttagaaaa ttctttttta
    10501 gaaacttcaa aagaagcttt tgatatagct atgcaaactt ctgtgtattc tttactttct
    10561 ttaacacgtg cggttttacc tattttaaaa gataagggtt cgattttgac tttaagttat
    10621 cttggtgggg ttaaatatgt gcctcattat aatgttatgg gtttagcaaa agctgcactt
    10681 gaaagttctg tgcgttattt ggcaagagat ttaggggtaa aaggaatccg tgttaatgct
    10741 atttcagcag gtcctattaa aactttagca gcaagtggaa taggggattt tagaatgatt
    10801 ttaaaataca atgaaatcaa ttctccttta aaacgcaatg ttagtataga agatgtagga
    10861 aattcggcta tgtatttact tagcgattta gcaaatggtg ttacaggtga aatacattat
    10921 gttgatgcag gatataacat catgggtatg ggtgatgttg aaaaaaatga agaagggcaa
    10981 actgttcttt gttgggataa tcaaaaagga taaaaaatgg gaaagcttag caatgaagaa
    11041 ttaaaaaata tacttgaaga tcgcattaaa aaacttgaga attctacttt aaaagaggac
    11101 aaggttatca atgaagaaag tgtaaaaatt cttgctaggc atttatcttt aggcaatgaa
    11161 attccagctc ttgctcaaag attttttcaa atcgcaccta aaacaaaatt agtatggctt
    11221 catctttgtg aatgtacagg gtgtagcgag agtttgttgc gttctgagtt gccaagtttt
    11281 gatgagctta tttttgattt tttttcttta gaatatcatg aaactttaat ggcggcaaat
    11341 ggcactaagg ctgaagagct tttagagtat gttttagaag aagattttat tttagcggtt
    11401 gaaggtggtg ttgcagccat tgataccttt tttcttacta taggagcgca aggagagagt
    11461 ggctatgaaa ttttagaaaa actagccgct aaagccaagg ctatctttgc agtgggtact
    11521 tgttcaagtt atggtggtat tcaggctgct tatccaaatc ctagtaaaac ttgtggtatt
    11581 agcgaagtct taagtcaaaa agtagtaaat atcccaggtt gtcctccaag tgatataaat
    11641 atcattgcga ctttaagttt ttttgcttta tttggagttt tgcctgaact tgatgagcaa
    11701 aatcgtcctg tgtgggctta tggtaaatgt ttgcatgata tgtgtgaaag aaaggcgaaa
    11761 tttgaaagtg ggatttttgc tgaacatttt gacgatgaag ctgtaaagaa tggagcttgt
    11821 ttatttaaga taggttgtaa aggaccttat acttacaaca actgtcctaa agtgaaattt
    11881 aatgctaaaa cttcttggcc agtggctgca ggacatggtt gtatagcctg tagtgagaaa
    11941 aatttttggg atgagtttgg gaattatgaa aaacctatgg caaatatttt ttcttacgct
    12001 aaactttgca atgaagagtt aaaacaagaa ttttttctag aagagcaaat taaaatttta
    12061 gaacaaatag attttgaatt tgaaagcaat ataaaactta ttttacaaaa tatagctaaa
    12121 aataaattag gtgcttcgct tgtagaaaat tataaaaaat cctttgagaa aaactatgct
    12181 tttatagaac aaaattttga tgaaaatcct atgccttcaa aagatttttg gaaatatctt
    12241 gagatgagtt ttattttggt taaaggcgca tttttaaaag ataagaatga ttttttaatt
    12301 gcggcaaaaa attatgcttt taaacatgca agtccttatg attttaagtt aaatatgaat
    12361 gctgaaaaac caaagcttga tgtgagtaaa tcttttcgta tgactttaat ctatctttgc
    12421 ggtgggcttg attttgaagg tattgcttat agtattttaa aagcttttga agataatatt
    12481 actaaaattt catcattaaa agcaagttaa tttaataaaa ttttagcaat atgaaaccct
    12541 ataaaagcta ctatataagc acttgtgcag gtaaaaagaa agagaaagag agtatatttt
    12601 agctttccac tttcttttga aaaaactata gttgctgcaa agcagggatt ataaatcatt
    12661 acaaataaaa taaaagccac tgcacttggt ataggtatat ttttggcaat aattcctttt
    12721 aaatcattat ttgtttcatc tacatctttt cctagtgaat aaagtactcc catagttgaa
    12781 atcatcactt ctttagcggc caaaccactg attaaagata cgcttaattt ccaatctaac
    12841 tcaaggggtt taaaaatagg ttctatgcct ttgccaaatt gtcctagata actttgttct
    12901 atagctcttt cttgagcgtt aaaatcattt aaattttctt cattttttgg aaaattgcta
    12961 gcaaaccata tgagcaaaga ggctaaaagt atgaaagttc ctgctttttt aagatacatt
    13021 ttggctttat tataaaccat aaaccaaact aaatgccaat ttggcatacg atattttggc
    13081 atttccataa caaaaggttc atcaagtcca cgaaatgctg tcattcttaa aaattttgca
    13141 gcacaaagtc ccaaaatcgc acctaaaata taaattccaa aaagataatt tcctgctttt
    13201 tcacttggaa aaaaagcacc gataaaaagc acatatacag gaagtcttgc cccgcaactc
    13261 ataaaattga tcacaaaaag agttaaaagt ctatctcttt tgttcttaag agtgcgtgta
    13321 gccataaaag caggtaccga acaaccaaaa ccagtgatta gcggaataaa acttttacca
    13381 tgcaaaccaa atttatgtaa aatcccatca agtaaaaaag ctactcttga catatagcct
    13441 gtggtttcta aaagagctat gcctaaaaat aaaattatta tattaggtaa aaaaagtatc
    13501 acagcaccaa cacctgcgat aatcccatca gctaaagctg aagcgatgaa ggtattagaa
    13561 atattgtttt taacaagttc acctaaggca ttaaagcctg attctatata atccatagga
    13621 atttgcccta agctaaaggt gagttgaaat aaaagccaca ttaaaaataa aaatataggt
    13681 aagccaaaga atttatggat aagtaaggca tcgatttttt tggttaaatt tctttcttct
    13741 tttttgtgtg tgataatttt gtcggcggaa aaataaaatg taaccataga aaaataaaat
    13801 gatacttttt ggttgcattt tatttttcta caaaccttaa acttaaaatg taattattgt
    13861 atttctttta ctttattttt ccaaaaatta acaaatttct catcgatttt aggatttatt
    13921 tcagcttctt ttattaaatc atttatataa tcaattcttt tttgcttgga tttaatggtt
    13981 tttaactttt gagcttcttc ataatactta atgcattgat tttcaaaaag atttacatca
    14041 taattatctt ccaaaagctg aattatatct ataattaagc cataggcttt aggatatcct
    14101 ttctgtattt tttgttctat ttctaatgca agttttcttc tgctttctgc aatatcttta
    14161 ttttttgatt ttaaagctat attaacgctt tcttctgcaa tttgaataaa tcttattgct
    14221 tctgcatatt catcttgatt atttaaaagc aaattgtgca aaaattttcc ttgctcattt
    14281 atagaaagtt ttttatattg ttcatataat tctcgatagg gtctttctaa tctttcgatc
    14341 atttcttctg taataatagc tttaccataa tgaatttttg ctgcttctat taaagaaatt
    14401 tcataatatt tagatattac ttctatctct tttaaatctt gtttagtaag aacaccatct
    14461 gctatttttt ttaatttcga ttccgtttta aaaccagaat aaataaataa agcaattatt
    14521 ataattaata ttgcaataat aaaatatagc atcattcata ttttataata gcattttcaa
    14581 aagttttaat tgaaattgct ttacaaacaa cgcctataat ttcagcacag ctaatttgat
    14641 ctatattaac aacaatgtcc ttataaaaag aattcataga gctcaataca atttcattta
    14701 caaaaggttg cttgaggagc tttttgcagt aaatttcacc atcaagatta ataaccacga
    14761 tatctccatt ttttacaagc tcgagtttat ttttactaac atcaacagct ataacatctc
    14821 cattatgaat aaaaggctcc atactatccc ctataacttt aataatatca agccttgtta
    14881 aaggcggcaa tcccaatgcc tcgcaagcaa attttttgct tattactatt tccgtatatt
    14941 ccaatttgct atttattgca ccatatccag cagcggcagc aacatccgta tagtatctta
    15001 attgcaaatt gtcatcatta attcgcattt tgccaaaaaa gatgctgtca agcgatatat
    15061 tttgttcttt tgatattttc aataataact cataagggat ggtatttcta gttctccaag
    15121 tacttaatgt attgggtttt atctcataaa ttccacaaaa ttccttgtcg tcggtaatat
    15181 ttaaaatagc ataaactcta ttcaaaatgt ctgttgtttt atacattatg aacctttttt
    15241 attaaaaaat tcacaaaatg cgataaaata acttgactta attcgcattt tgtcttataa
    15301 tttgaaaaat tatttacaaa ttgtatctta aaaaatatca atttgaaata aaaattacaa
    15361 attaaaggag atattttgtt
//
LOCUS       DARGEM010000030        15225 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.030, whole genome shotgun sequence.
ACCESSION   DARGEM010000030 DARGEM010000000
VERSION     DARGEM010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15225
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.030"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1583)
                     /locus_tag="SFZ78_000716"
     CDS             complement(<1..1583)
                     /locus_tag="SFZ78_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8211612.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     IPLNKTIQITVAQGIDPIESQDESLILAYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFVEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDSNYDE
                     EFAILGEQISKLNHKMNKIRQYILSSKNGILSVEKKITELKNQGQNVPIQYEKALKDF
                     SLQNLELNKLQNEEKELLER"
     gene            1687..3138
                     /gene="murJ"
                     /locus_tag="SFZ78_000717"
     CDS             1687..3138
                     /gene="murJ"
                     /locus_tag="SFZ78_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8211613.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            3138..4526
                     /locus_tag="SFZ78_000718"
     CDS             3138..4526
                     /locus_tag="SFZ78_000718"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG8211614.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLD
                     TPNGTIWEKINA"
     gene            4519..6261
                     /locus_tag="SFZ78_000719"
     CDS             4519..6261
                     /locus_tag="SFZ78_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211615.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFSKHNDILCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            6293..7351
                     /locus_tag="SFZ78_000720"
     CDS             6293..7351
                     /locus_tag="SFZ78_000720"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG8211616.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            7348..8598
                     /locus_tag="SFZ78_000721"
     CDS             7348..8598
                     /locus_tag="SFZ78_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8211617.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTM
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDDNLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            8591..9487
                     /locus_tag="SFZ78_000722"
     CDS             8591..9487
                     /locus_tag="SFZ78_000722"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG8211618.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            9487..10266
                     /locus_tag="SFZ78_000723"
     CDS             9487..10266
                     /locus_tag="SFZ78_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG8211619.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(10307..10612)
                     /locus_tag="SFZ78_000724"
     CDS             complement(10307..10612)
                     /locus_tag="SFZ78_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211620.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(10624..11220)
                     /locus_tag="SFZ78_000725"
     CDS             complement(10624..11220)
                     /locus_tag="SFZ78_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8211621.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            11294..12034
                     /locus_tag="SFZ78_000726"
     CDS             11294..12034
                     /locus_tag="SFZ78_000726"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG8211622.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDKGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            12038..12964
                     /locus_tag="SFZ78_000727"
     CDS             12038..12964
                     /locus_tag="SFZ78_000727"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG8211623.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFDFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LATAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            12961..14373
                     /locus_tag="SFZ78_000728"
     CDS             12961..14373
                     /locus_tag="SFZ78_000728"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG8211624.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLREFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNKIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKNIKKEILDWMQK"
     gene            14370..15089
                     /gene="kdsB"
                     /locus_tag="SFZ78_000729"
     CDS             14370..15089
                     /gene="kdsB"
                     /locus_tag="SFZ78_000729"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG8211625.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
BASE COUNT         5271 a         1850 c         2693 g         5411 t
ORIGIN      
        1 cgttcaagaa gttctttttc ttcattttgt agtttattta attcaagatt ttgtaaagag
       61 aaatctttta gggctttttc gtattgtata ggaacatttt gaccttgatt tttaagttct
      121 gttatctttt tttcaacgct taaaattcca tttttacttg ataaaatgta ttgtcttatt
      181 ttattcattt tatgatttaa cttagaaatt tgctctccta aaatcgcaaa ttcttcatca
      241 taattactat caagagtttt aattttagca tgaaatttat tgttatcccc gttgatgcgt
      301 tctattgtgg tgttttcaaa aaacacacaa gaattattac tttctaaatt ttctatatag
      361 attttatcag cttgtatatt tccgcctaaa ctttttttaa ttctcacttc tttagctttg
      421 attgttccac cttcgagcaa atctatattt aaaatttcgg cttctacaaa tcctctatga
      481 gtttttatat aggcttgttt ggcttgaatt ttggctttag agtgtgtagt gccttcaatt
      541 ttcattttgg tggcattaag ttgagtgttg cttcctacgc ttccgactac atttaattct
      601 tcacattcta tcccaacgcc agaatttaca gcatctttta cttctgaaag aaattttata
      661 ttgattttga catttttgtc tagtccagct cttataatcc ctatattttt aaaatctacc
      721 ccattaaaat ctagttcatt tgcaatatca aatttttcac catcttgtac tacataacct
      781 ttttttaagg ctatatattc tgtgtatcca tcttgctcta cttgtttaaa agctgaagaa
      841 caagaaaatt taactttatt ttcatttgcg gctaaaactt ttaaggtgtg caaatttaag
      901 tcttttcctt ctttaccttg tttaaatttg gcgtgtttta aaacaacttc gttttcatca
      961 acaacaataa tacctgagcg tttttcatcg atagtgtagt ttttggtttt ttctttataa
     1021 gccaagatca gggattcatc ttgactttct ataggatcaa taccttgtgc aacggtgatt
     1081 tgtatagttt tatttaaagg gatgttttta tgttggttgc aaaaagacat taaatttttc
     1141 ttaaaatcaa aaatgcggat acctattaaa aatttaagtt tcaacatctt tttataaata
     1201 ttttgcaaaa gttctagtgc tagtttttca tgaaagtcta aatttgtaaa atcaatttga
     1261 gcaactattt tggttaaatt tttatttgca actagtttga ctgcttgaga tgctttgctt
     1321 tggtttatac cgtggaaaat ttctattttg tattcttgct tgatttgaag atcatttttt
     1381 aaaaaaattt catctttatc aaaaagagtt aattcttttt cagagatttt ttcccattct
     1441 aaatctccaa aacgatattg tgtagaaaac gccaataaac taaaatcaag ctcatttaag
     1501 ctaaggtttg ttcgtgaagc tacgcttaaa agctctcgag ctggattttc tgtataggca
     1561 ataatttttt catccaaagc caaaactttc cccttgtaaa aaattaagaa tgtaattata
     1621 gtcaattttt aatcaatttt agttaaaata gttctcttta tattttgaaa tttatgaaaa
     1681 aatttaatga agagtttagt atttaaaaat tttattatca atgctttagg aattttattt
     1741 tcaagaattt tagggcttgc tagagatgtt ttaatagcgc tttttttagg agcagggctt
     1801 tatagtgata ttttttttgt ggctttaaaa atgcctgctt tttttagaag aatttttgca
     1861 gaaggggctt ttggacaaag ttttttgcct aattttgtaa aagcgaaaaa aaaaggagct
     1921 ttttgcgtta gtgtaatgat gcaatttagc cttatagttt ttttattttg tcttttggta
     1981 agttttttct cctctttttt taccaagctt tttgcttttg ggtttaacgc agatactata
     2041 gctttagcgg ctcctttggt ggcgattaat ttttggtatt tgttttttat ttttttagtt
     2101 acttttttag gagctatttt aaattataga caaaaatttt tcattacctc tttttctgcg
     2161 gcattattta acttaagtat tgttatagct gccttttttg tggataaaaa tgcaccgcaa
     2221 aatacacttt attatttttc ttatgcaacg gttttaagtg gggtggcaca gcttatttta
     2281 catttgcttg ttttaaaaaa caatcctgta atacgtgcta tgactttaag tataaaattt
     2341 aaaaaagcca aggcgaaatt acaaggtttt tatggcaatt tttttcatgg agttttaggt
     2401 tcttctgcga ctcaatttag ctcattgctt gatacaacta tagctagttt tttaatgagc
     2461 gggagtattt cttatcttta ttatgcaaat cgtgtcttcc aactccccct ggcacttttt
     2521 gctattgctt taactcaagt ttcttttcca aaaattttaa aacatttaaa aagtgatcaa
     2581 gaaaatttag ccttaaaatt tatgcaaaga gcattagcac ttttaagcat tttgcttatt
     2641 gcttctagta ttgtaggttc tgtgtttgct ttggaaattt caaagctttt atttgaaaga
     2701 ggaaatttca ctcacgaaga tagtgtgatt acggcttatg ttttgattgc ttatcttata
     2761 gggcttttac cttttggttt gcaaaagctt ttttctttgt ggctttatgc aaaatttaaa
     2821 caaaaaacag cagcttggat cgcggtaaaa tctttaatta tcagtgcttt atgttctatg
     2881 gcttttatat ttttgattaa agatgaaagt ttaaaggtta ttgcagtggc actttcaagc
     2941 tctattagtg ctttttattt gcttggagct aatatcaaag aatttggttt taagaaattt
     3001 tttgctttaa tatctattaa aatttgctta ttggttatag ttgctttgat tgtttttacg
     3061 atcttgctta ttttgattaa accttatatt ttaagttttt ttataggaat ttttacaagt
     3121 tttaaaggag ttttttaatg agattattag acagtgtaac aaaagagaaa ataaaacttg
     3181 ataaaaaaga tattagtatt tacttatgcg ggcctacggt ttatgatgat gcacatttag
     3241 gacatgcaag aagtagtgtt tgttttgatc ttttgcgtag ggttttactt gctcagggca
     3301 atagggtaaa atttgctaga aattatacag atattgatga taagattttg aaaaaaatgg
     3361 ctcaaagtgg tcaaacttta gaggaaatta cggaatttta tattaaaagt tatgaagagg
     3421 atatgagggt tttaaatgta ttagatcctg attttaaacc tcgtgcaacg cattatataa
     3481 cagctatgct tgatttgatt aaaaagcttg ctaaggatgg gtttgtttat actctagaag
     3541 atggaattta ttttgataca agtaaagatg aaaaatattt aagcctatca aatcgcaatt
     3601 tagaagaaaa tatctctcgt ctaagtaatg aagtgcaaaa aagaaatgaa agcgattttg
     3661 tgctttggaa atttgatgaa aatttttacg aaaatgaatt tggcaaaggg cgcccaggtt
     3721 ggcatactga atgtgttgct atgattgatt ctatttttga aaatactctt gatatacatg
     3781 ctggagggat agatttgctt tttcctcatc atgaaaatga agctgcgcaa tgtcgttgtg
     3841 gatgtaagag aaaattagca aatatttggc ttcataatgg ttttgtaaaa atcgatggcg
     3901 aaaaaatgag taaaagttta aataatagtt ttttcataaa agatgcttta aaagaattta
     3961 tgggcgaagc tttaagattt tatcttttga gttctcatta tagatctcat tttaattatt
     4021 ctttattgga tttagaaaat gctaaaaaac gtttagataa attttatcgc cttaaaaaaa
     4081 gattggattt aggtgaaatt tctgattttg atgttttaaa tgatattgaa ataaaaagcg
     4141 aaattgctaa gcaaatttta gagattttaa atgatgattt aaacgtttct aaagccttag
     4201 ctcttttaga tgattttata aataatgcaa atttagagtt ggataaagaa agcaaaaata
     4261 aaattttaaa acaaaatatc aaagaagctt taagtgagct agctaaaatt tttggctttg
     4321 gttttatgga tacaacttta tattttcaat ggggtgtaag caaagaagaa cgagaagaga
     4381 ttgaaaagtt aattttagaa agaactgagg ctaagaaaag caaagatttt aacacagctg
     4441 atacaataag ggaacaacta agtagtaaaa aaatcactct tttagatact ccaaatggaa
     4501 caatttggga gaaaataaat gcataatgag atgaatttaa aagaggtttt aatacgcttt
     4561 aagccctttt ataaaagata ttggaagcaa tttgctatag ctatttttgg tatgatttta
     4621 gcaagcggag gaactgctgg aagtttttat gctttagagc ctattttaaa ttatattttc
     4681 gttgaaaaaa atgaagcttt actttataca gtgccttttt tgctagtatt gatgtatttt
     4741 tttaaaaatc ttggaactta tctacaaagt ttttatgttt cctttatagg aacagatatg
     4801 ttaagagtat tgcgtgctag ggttttaaaa aatgttttac gcttggatat ggattttttt
     4861 aaacgctata gaagcggaga gcttgtaagt cgttgtacta atgatattaa tgcacttcaa
     4921 agtatagtat caaatattat tcctgatttt tttagagagc ttttaactgc tataggactg
     4981 cttgcggtag tcttgtatca aagtcctact ttggcttttt ttgctttagt gattttgcct
     5041 ttagctattt ttcctttggt atggtttgct aaaaaactta aaaaatatgc aagaaatata
     5101 caagaaacaa attcggattt actttcttat ttgggtgaaa ttttttcaaa tattgaattg
     5161 atcaaagcta atgataatga aaaaaaagaa agtgataaat tttctaagca taatgatatt
     5221 ttatgtaaat taaacctaaa atccgcacgt attgatgcac ttacaagtcc tttaatggat
     5281 atgatgggtt ctgttggggt tgctgtggtg attattgtag ggggtagaga ggttatcaat
     5341 ggttctatga gtgtgggaag ttttatcagt tttgtttcgg cactttttgc gatatatact
     5401 cctttaaagc gtctttcgtc tttatatgga aaacttcaag gtgctgttgc ggcaagtgaa
     5461 agaacttttt atttattgga tttagaacct caaattaaag gtggaagcaa agaattaaaa
     5521 aacattgaaa aaattagctt tgaaaatgtt gaatttgctt atgaaaaccc gcataaaagt
     5581 gttttaaaag gcgtaaattt tgattttgtt aaagggcaaa tgcttgctct tgtagggaca
     5641 agtgggggag gcaaatcttc tattattaat cttttgatgt atttttatga aaagcaaaaa
     5701 ggtaaaattt tactcaatca agaagatatt agcactttta ccatagaaag cttacatgct
     5761 aaaataggac ttgtaacgca aaatatttat ctttttaatg atagttttgc tgcaaatatt
     5821 gcttatagcg aagagttaga agaagaaaaa gtcatccaag ctttaaaatt ggccaatgcc
     5881 tatgaatttg ttaaagaaat gggcgggatt tgggctgaag tgaaagaaca tggtaaaaac
     5941 ttaagtggag gacaaaaaca aagaatagca atcgctagag ctttatataa aaatcctgat
     6001 gtgcttattt ttgatgaagc aacttcagct ttggataatg aaagtgaaaa agcaatagtt
     6061 aaaactatag aaaatttaaa acaagacaga ttgattttag tggttgcaca tcgtttaagc
     6121 actatagaaa atgcagataa aatagtagta ttggataagg gtaaggtatt ggcaataggt
     6181 aaagatgaag agcttttgca aacttgttct ttgtatcaaa aatttaaaag caaagaaaaa
     6241 acaaagccta gctttagtta attttagtta gaattttaaa aaggattaaa aaatggctta
     6301 tgaaatgata aaacctttac tttttaagtt aaaccctgag tatacacatg ctttggttga
     6361 atgtagctta agggctttaa gtgctagttt tccaggagct ttaagttttt tagcacacaa
     6421 atatatagtt gataatgaga gtttaaggca aaatttactt ggacttgatt ttaataaccc
     6481 tgtgggttta gcaggaggct ttgataaaaa tgctactatg ataagacctt tgagtgcttt
     6541 aggatttggc tttttagaag tgggaacttt tactccaaaa cctcaagaag gcaatgaaaa
     6601 accacgtcta tttagacttg taaaacaaga aagtatacaa aatgctatgg gttttaacaa
     6661 cgaaggtgct gaaaagattg ctttaagact tgcaaaaact tatccttttg ttttaccctt
     6721 aggagtaaat atagggaaaa ataaaatcac tccaaatgat aaagccttgg aggattattt
     6781 tactttgttt agagatttta aggatttatg tgattatttt atcgttaata tctcatctcc
     6841 taatactaaa aatttaagag agttacaaaa tgatgatttt ttaaatacct tgcttgaaga
     6901 agccaaaaaa attacttcta agcctatttt gataaaaatt gctcctgata tgaaaataga
     6961 tgatgcttta aatttatgtg aaaatgctat taaaaaaggt gcagatgggt ttatattagc
     7021 caatactagt gttgattata gcttactaga taataatcgt acttttggtg gtattagtgg
     7081 aaggttgatt acagaaaaaa gtggtatttt tttcaaagaa gtagctaaaa ttctttttgg
     7141 caaaaccttg cttattgcaa gtggagggat tgatagtgct gatattgctt atgagcgtat
     7201 taaaaatggg gctaatttgg tgcaagttta tacagctttg atttttaaag gtccttcttt
     7261 ggtaaaaaat atcaatcaaa atcttataga gcttttaaga aaagatggtt ttttacacat
     7321 tagcgaagct gttggggtaa atttaaaatg attgcttatg aaaaaattca attaaaaaac
     7381 aagcttgaag tttatgcttt gcctgtaaat aaaaatagcg atgtgattag cgttgatatt
     7441 ttttataaag taggttcaag aaatgagatc atgggaaaaa gcggcatagc tcatatgcta
     7501 gaacatttaa attttaaaag tactaaaaat ttaaaagctg gcgaatttga tgagattgtt
     7561 aagggttttg gtggtgtgga taatgcaagc acaggttttg actatactca ttattatatt
     7621 aaatgtgcga agaaaaattt agataaagct ttggaacttt ttgcagaact tatggcgaat
     7681 ttaaatttaa aagatgaaga atttcagcct gaaagagcag tggttttaga agagcgtaga
     7741 tggagaacag ataataatcc tttgggatat ctttatttta gactttttaa tcatgcattt
     7801 atgtatcatc cttatcattg gactcctata ggttttttta aagatataga aaattggagc
     7861 attgaagata ttaaagaatt tcacagtatt tactatcaac ctaaaaatgc gattttactt
     7921 gtaagtggcg atatagaaag taaagaagtt tttgagcttt caaaaaaaca ttttgaaaag
     7981 attaaaaata ctaagactat gcctaaaatt cacacaaaag agcctaagca agatggagca
     8041 aaaagaatat atttgcataa aaactcagat actgaactat tagcccttgc ttataaaatt
     8101 ccaaatttca agcacaaaga tatacctgct ttaaatgctt tatccgagct tttaggaagt
     8161 gggaaaagtt ctttaatgag tgaaattttg attgataaat taaatttaat caatgattat
     8221 tatgcttatg ttaatgattg tatagatgac aatttattta tttttatttg taattgtaat
     8281 cccaatgtta atgcagaaaa agtagaaaaa gaacttttaa aaatcattga taaacttaaa
     8341 atgggtaaaa tttctcaaaa agatttgcaa agagtgaaaa ataatgtcaa aagtgatttt
     8401 attttctcac ttaacaatgc tagtgcagtg gcaaatattt atggttcata tctagcaaga
     8461 ggagatatca atcctttgtt aaattatgag aaagatatac aaaatttgga attaaaagat
     8521 ttgatttctt gtgctaaaaa atattttatt caagaaaatt caactacggt aattctaaga
     8581 aaggattcaa atggataaaa atattatcat tggggcgatg acggctctta ttacaccatt
     8641 taaaaatgga aaagttgatg agcaaagtta tgcaagattg attaaaagac aaatagaaaa
     8701 tggcatcgat gcagtagttc cagtaggaac aacaggagaa agtgcaactt taacccatga
     8761 agaacataga acttgcatag aaatagccgt tgagacttgt aaaggaacta aagttaaggt
     8821 tttagcaggt gcgggaagta atgcaactca tgaggcagtg ggtttggcta aatttgctaa
     8881 agagcatggt gctgatggga ttttaagtgt ggcaccgtat tataataaac ctacgcaaca
     8941 aggactttac gagcattata aggctattgc gcaaagtgta gatattcctg tgcttttata
     9001 taatgttcca ggaagaacag gttgtgaaat ttcaacggat actattatca agctttttag
     9061 agattgtgaa aatatttatg gagtaaaaga agcgagtgga aatatcgata agtgtgtgga
     9121 tttgcttgca cacgaaccta gaatgatgct tatttcaggg gaagatgcga tcaattatcc
     9181 tatactttca aatggtggaa agggagtgat ttcagtaact tcaaatttat tacccgatat
     9241 gattagcgct ttaactcatt ttgctttaga tgaaaattat aaagaagcta aaaaaatcaa
     9301 tgatgagctt tataatatca ataaaatttt attttgcgaa agtaatccta ttcctattaa
     9361 aacggctatg tatttagctg gattgataga aagtttggaa tttagacttc ctctttgttc
     9421 tccaagtaag gaaaattttg ctaaaattga agaagtgatg aaaaaatata agatcaaagg
     9481 attttaatga atacagaatt tcaaggaaaa actttagtga ttagcggtgg aactcgcggg
     9541 ataggcaaag ctatagttta tgaatttgct aaagtgggtg caaatatagc ttttacttat
     9601 aattctaatg cgcaaattgc tgatgaaatg gttcaagatt tggagaaaaa ttataaaatc
     9661 aaagctagag cttatgagtt taatatctta gaacctgaaa cctataaaga actttttgaa
     9721 aaaattgatg tggattttga tagagtggat tattttatct caaatgctat catttcagga
     9781 cgtgcggttg taggtggcta tactaaattt atgaagttaa aaccaaaggg aattaataac
     9841 atttttacag ccacagtaaa tgcttttgtt gtgggcgcac aagaagcagc taaaaggatg
     9901 gaaaaagtag ggggtggaag cattatttct atctcatcta caggaaattt agtgtatata
     9961 gaaaattatt caggtcatgg tacagcaaaa gccgctgtag aagctatggc aagatatgcg
    10021 gctactgaac ttggagaaaa aaatatccgt gtaaatgtcg taagtggtgg gcctattgaa
    10081 actgatgctt taagagcttt tacaaattat gaagaagtaa aacaggctac tataaattta
    10141 agccctttaa atcgcatggg gcagcctgaa gatttggctg gagcatgtct ttttctttgt
    10201 tcaagtaagg caagttgggt gacaggacat actttcatcg ttgatggtgg tacaactttt
    10261 aaataaaaat taagaaaaat caatggattt ttcttaaaaa tatttttcaa tcaagtttta
    10321 atttccaccc taaaaaaaca cttaataatg caagtaaaaa aataaaattt aaagtccaat
    10381 taccaaaacc tataaaacct atagataata cgctgtaaaa aaatcctcct acagctgaat
    10441 aaatacaaat cgtacttaaa gatccatttt ctgccatttt tttacatggg cagattttat
    10501 aaaatttttt atcattaaat tgatttttct ttttatttcc caaaaataaa ccaaaaaggg
    10561 caaaaagatt taaaaaaata aaagcatata ataaaatttg atctaattcc attttaatat
    10621 accttaaaaa tatctaagcc aagagggtag atggacttgc tcttctttta aagtagtttc
    10681 ttgtccatgt cctggcaaaa gtttaaaatc ttctttgtaa gtcataactt tttctaagct
    10741 ttgtttcatt aaatttgcat ctgaataagg aaaatcccat cttcctatgc ttctataaaa
    10801 taaaaaatct ccactaaaca tgatattttt acctacaatt tctatcatag tgcaacctgg
    10861 tgtatgtcct ggtaaaaagt gaaatttaaa gtcaagtccg cctatagaaa tgatattttc
    10921 atcatcaatc aaataatccg ctttgctagg cataaaacct tgattaaaag gatcttcaag
    10981 cataaaagta tcatttttat gaatataaat ggggatttga taggcttgtt ttactttttc
    11041 attatcccaa acatgatcgt aatgtccgtg agtgtttaaa atcgctaaag gattttttac
    11101 atgttttttg atgaaattta gcgcatcaaa accaggatca attataattt ctccatgctc
    11161 accaaataaa atataacaat ttgtctcata agctccacaa gcttgtttga taatttgcat
    11221 tttttgcctc tttaataaaa aatttgcctt aaataaatat aattatacat taaattttta
    11281 aaaggcaagc tttatggatt ggcaaaagat tacggaaaaa atgtgtgatt ttatacaaga
    11341 aaaagtgaaa aattctcaaa gtcaaggtgt ggttttgggg cttagtggcg ggattgattc
    11401 tgctttggta gcaacgcttt gtaaaagagc tttaaaagag aatgtttttg ctcttttaat
    11461 gccaactcaa atttcaaaca aagccaatct tgaagatgct ttaaggcttt gtgcggattt
    11521 aaatcttgaa tataaaatca tagaaattca aagcatttta gatgctttta taaagcaaag
    11581 tgaaaatacc actctagtat ctttgggaaa ttttgcagcg cgtattagaa tgagtttgct
    11641 ctatgattat tctgctttga aaaattcttt agtcataggc acttctaata aaagcgaatt
    11701 gcttttaggt tatggtacga tttatgggga tttagcttgt gcttttaatc ctataggatc
    11761 gctttataaa agtgaaattt atgccttagc aaaatacctt aacttgcatg aaaatttcat
    11821 caaaaaagct ccaagtgcgg atctttggga aaatcaaagt gatgaggcgg atttaggttt
    11881 ttcttatgca aaaatcgata aaggtttaaa agctttagaa actaatgatg aaaaactttt
    11941 aagaacgctt gatccttctt tgattgctat gttaaaaaat cgcatgcaaa aaaatgcttt
    12001 taagggaaaa atgcctgaaa ttttggaaat ttaaacaatg aatgaagaaa aaaattatga
    12061 actttggctt gataattatt tttttaagcc caatttttgg caaaaatgcc ttgcttttat
    12121 acttttacct ttaagtgtgc tttatgcttt ttttgcgatt ttaaatactt tttttcgtaa
    12181 aaaaatagtt tttaaaaagc ctgttattag cgttggtaat ttaagttttg gaggtaatgg
    12241 aaaaaccccg ctttgtaaag ctatagcaag ggaatttgat ggcgttttta tagtacttag
    12301 gggctataaa agaaagtcta aaggtttgtt tgttgttaaa aatcaaaatg aaattttatg
    12361 caccttagca caaagtggcg atgaagctat ggagtatgct tttgaagaaa atatcaaagg
    12421 tgtgattgtg agtgaagata gagtaaaagg tattgaaaaa gcctttgaat tgggagctaa
    12481 aatcgttgta ctcgatgatg ctttttctaa atttcatatt aaaaaatttg atattttgct
    12541 tgaaagcaaa atcaaacctt attttgattt tactttacca agtggagctt atcgtttgcc
    12601 aaaattttat gaaaaaaggg ctgattttat tgcattagaa ggcagggatt ttgtgcgtta
    12661 ttcttttgta aaagaaaatc caaaggctgt tttggcaact gctattgcta aaccttttag
    12721 attgtatgag cattttatca aagcaagggc ttgttatttt tttaaagatc attatgagtt
    12781 taaaaaagaa gaattagaaa atttgctaaa aaaacataat tgcgatacac taatgcttac
    12841 ttttaaggat tttgttaaag ttaaagattt tggttttaaa tgtcaaatta tagaattaaa
    12901 tatagaatta aaagattcat taagggaaaa aataaaaact tatatcaagg agtttgagca
    12961 atgaaattag tcgagagtag aaatgtaaat aatgtatcaa gttttaagga agctttgatt
    13021 aacccaaacg ccccagaagg agggctttac tcgcctttaa atttgcctat ttttgaagga
    13081 gaaaaatatg ccaatttgtc ttataaagat tttgctttaa agcttataga aagttttggt
    13141 tttggcgaag aagagctttt taaaaaggct ttgaaaagtt acgaaagctt tgatgataaa
    13201 aatacaccta tttctttgca aaaaatctct gaaaaaacct atattaacga gctttggcat
    13261 gggcctacaa gagcttttaa agatatggct ttacagcctt ttggcgtgct tttaagagaa
    13321 ttttcaaagg ataaaaatat tttaattatt tgtgctacga gcggcgatac aggacctgca
    13381 accctaaaaa gctttgaaaa tgcaaaaaat gttaaagtag cttgtatgta tccaaaaggt
    13441 ggcacaagtg gagttcaaga gttgcaaatg cgagctttag ataaggataa tttgaaagtt
    13501 tttgctatag atgaggattt tgacgcagcg caacgcactt taaaagaatt gcttttttca
    13561 aaagattttc aaaacaaaat taaagcttta aattatgagc tttgcgcagc gaattctgta
    13621 aattttgggc gtattttatt tcagattatt tatcattatt atgcgagttt aaaacttttt
    13681 aatgagtttt tagaagaagt acaaatcatt gttccaagtg gaaattttgg caatgcttta
    13741 ggagcttttt atgctaaaaa aatgggagct aaaatttcaa aaatcaaaat cgcttcaaat
    13801 gtgaataata ttttgagtga attttttaat catggcgttt atgatttgcg tgaaaaaagt
    13861 cttaagaaga ctatttctcc agctatggat atacttattt catctaatat cgaaagactt
    13921 ttgtttgcga aatttaaaga taaaagaacc aaagaactga tgaatttgtt gaaaaatgag
    13981 agatatttta aacttgaaaa agaagaattg caaagtttac aagaagattt tgaggcggat
    14041 ttttgcaccg atgaagaatg tatgcaattt atcaaacaaa gcaagatttt aatcgatccg
    14101 cacaccgcaa cttgttttaa aatgcttgat cctttaaaac ctagcattat tacctctaca
    14161 gcagaatgga caaaatttac tccaagtatg ataaaagctt tatacgatag ggattctaag
    14221 aatgaaaaag aagatttaaa atttatagct aaagagttta atgtccaagt taaagatgaa
    14281 attttggctt tatttgactt gaaaaatagc gatgaaaagg tatttgaagc caaaaatata
    14341 aaaaaagaaa ttttagattg gatgcaaaaa tgattattat tcctgcaaga ttaaaatcaa
    14401 gtcgttttca tgagaaaatt ttatgtgatg taggtggagt gcctatgttt gtggctactg
    14461 caagaagggt aagtagtgtg gatgaagttt gtatagcttt agatgatgaa aaggttttaa
    14521 gtatcgctaa agaatatggt ttaaatgcag ttttaacaag caaaaatcat gaaagcggta
    14581 cggataggat taatgaagct tgtaagaaac tatctttaaa agatgatgag attattatca
    14641 atgtccaagc tgatgagcct tttatagaat gtgaaaattt attaaaattt aaagaatttg
    14701 caagttcttg cttggataaa aaagctttta tggcgagttg ttataaaaaa atcactcaag
    14761 aagaagctat ggattctaat ttggttaaag tgctttgcga taaagaagga tatgctttgt
    14821 atttttcaag agctaaaatc ccttatgaaa gagaaaatta cgaggaaagt tttaaagggc
    14881 atttaggcat ttatgcttat agtgtaaaag ctttaagaga gttttgttct ttattaagtt
    14941 ctgcacttga aagagcggaa aaattagagc aattaagagc tatagaaaat ggtaaaaaaa
    15001 tcaaaatgct tgaaatttca acaacaagca tggggattga taccaaagaa gactatgaaa
    15061 aggctttaaa aatttattta gaaaaataac tccaccccaa aatggaacag atcttgctta
    15121 tattatttta atatatttag attgaaggca aaaaaatcta aatcaaggaa ttaatatgag
    15181 tatctttagc atcaatgata actcaaatta taattctata ctttc
//
LOCUS       DARGEM010000031        15204 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.031, whole genome shotgun sequence.
ACCESSION   DARGEM010000031 DARGEM010000000
VERSION     DARGEM010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15204
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.031"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(48..242)
                     /locus_tag="SFZ78_000730"
     CDS             complement(48..242)
                     /locus_tag="SFZ78_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG8211626.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            382..1029
                     /gene="rpe"
                     /locus_tag="SFZ78_000731"
     CDS             382..1029
                     /gene="rpe"
                     /locus_tag="SFZ78_000731"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG8211627.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHVESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1026..1796
                     /locus_tag="SFZ78_000732"
     CDS             1026..1796
                     /locus_tag="SFZ78_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8211628.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFILKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEILKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     regulatory      1810..1914
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1971..3263
                     /gene="thiC"
                     /locus_tag="SFZ78_000733"
     CDS             1971..3263
                     /gene="thiC"
                     /locus_tag="SFZ78_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG8211629.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3255..3773)
                     /locus_tag="SFZ78_000734"
     CDS             complement(3255..3773)
                     /locus_tag="SFZ78_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211630.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3763..4290)
                     /locus_tag="SFZ78_000735"
     CDS             complement(3763..4290)
                     /locus_tag="SFZ78_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211631.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4287..5246)
                     /locus_tag="SFZ78_000736"
     CDS             complement(4287..5246)
                     /locus_tag="SFZ78_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG8211632.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(5248..5877)
                     /locus_tag="SFZ78_000737"
     CDS             complement(5248..5877)
                     /locus_tag="SFZ78_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG8211633.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(5861..7162)
                     /gene="miaB"
                     /locus_tag="SFZ78_000738"
     CDS             complement(5861..7162)
                     /gene="miaB"
                     /locus_tag="SFZ78_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG8211634.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDILEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7159..7401)
                     /locus_tag="SFZ78_000739"
     CDS             complement(7159..7401)
                     /locus_tag="SFZ78_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211635.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7528..8616
                     /gene="nusA"
                     /locus_tag="SFZ78_000740"
     CDS             7528..8616
                     /gene="nusA"
                     /locus_tag="SFZ78_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG8211636.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8632..9819)
                     /locus_tag="SFZ78_000741"
     CDS             complement(8632..9819)
                     /locus_tag="SFZ78_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211637.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLARLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INNKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     AYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            9893..10939
                     /locus_tag="SFZ78_000742"
     CDS             9893..10939
                     /locus_tag="SFZ78_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG8211638.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDKEIIDHFE
                     YLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10939..12159
                     /locus_tag="SFZ78_000743"
     CDS             10939..12159
                     /locus_tag="SFZ78_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8211639.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILLRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETMNAYIKKHQ
                     ELLNISFASIQNEN"
     gene            12149..13972
                     /gene="recG"
                     /locus_tag="SFZ78_000744"
     CDS             12149..13972
                     /gene="recG"
                     /locus_tag="SFZ78_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8211640.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKAKKDLAKKLPN"
     gene            complement(13969..14352)
                     /gene="ctb"
                     /locus_tag="SFZ78_000745"
     CDS             complement(13969..14352)
                     /gene="ctb"
                     /locus_tag="SFZ78_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG8211641.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            14447..15043
                     /gene="nssR"
                     /locus_tag="SFZ78_000746"
     CDS             14447..15043
                     /gene="nssR"
                     /locus_tag="SFZ78_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEG8211642.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAVFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKNLDTISQKQIAIDLNV
                     RAQSLSRVLKELKISELIDTKKGRIEILNKDMIMKELW"
     gene            15059..>15204
                     /locus_tag="SFZ78_000747"
     CDS             15059..>15204
                     /locus_tag="SFZ78_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8211643.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKI"
BASE COUNT         5370 a         2027 c         2511 g         5296 t
ORIGIN      
        1 ttatttttaa attggaaatt ttaaaattga ggaataaatc ctcaaaatta tttagaattt
       61 tgttttttta gagttctcag agtagaagct gcgattctca tttttctcgt ggtgccatct
      121 tctaaagtta cacgaactgt tctgagatta ggtaaaaagc gtctttttgt tttattgtta
      181 gcatggctga cattattacc caccattgga cccttgcctg tgatttgaca tactcttgcc
      241 attttcttgt ccttatgaaa atttttaaat gaagattcta tcaaaattaa gcttaaaata
      301 ttccataatt tatagttttt ttaatatata agtcgataaa atattattta tcacatttat
      361 atatagttta aggttttgat catgtatgta gctccaagtt tattgtctgc aaattttttg
      421 aaattagaag aagaagttaa agctattgaa gctgcaggtg cagatctttt acatattgat
      481 gtaatggatg gacactttgt tccaaatttg actttcggac cttgcgtgat cgaaaaaatt
      541 tcaactatta gtaagttgcc attagatgtg catttgatgg ttaaagatgt aagtaaattt
      601 atagatcttt ttatcccttt gaaaccaaaa ttcatttctt ttcatgtgga aagcgaagtt
      661 catcctataa ggctttgtga atatataaga agtcaaggaa tccatcctgc tattgtttta
      721 aatccacaca ctcctattga ttctattaaa cacatgctag aatttgtaga tatggtgctt
      781 ttaatgagtg ttaatcctgg atttggtgga caaaaatttt tacctttggt acatgaaaaa
      841 atcaaagaat tacgccaaat gattgataaa aaaaatgcta aagtttttat agaggttgat
      901 ggtggtgtta atggtttaaa tgctagcgat ttagaggaat ccggagctga tattttggtg
      961 gctggaagtt atattttttc ttctaatgat tataaaactg caatttcatc tttaaagctt
     1021 gaattttgag tttacagcaa attgatcaga ttatttctat attaaacaag caaagcaagc
     1081 cttatgattg ggtgatgcaa gagtttgcca aagttgaaga attaaaaaat tttgatttag
     1141 atttggaaac ttttgagctt ttgggtttgg gcttaacttt gaataaagat aatattttta
     1201 tccttaaaac acgcacaaca aaaattaaag atgaaatttt ttgtatagta gatatagaaa
     1261 gtactggcgg tgtaagtaag ggggaaattt tagaaattgg agcagtaaaa attcaaaatt
     1321 ctaaagaaat tggacgcttt caaagttttg ttaaagtaaa agaaattcca gaaaatataa
     1381 ccgaacttac gggtattact tatgagatgg tggaaaatgc tccaagttta acaaaggttt
     1441 taagtgattt taggcttttt ttaaaagaca gtatttttgt agcacataat gtgcgttttg
     1501 attatagttt tatttctaag gctttaaatg agtgtggttt tggcatttta cttaatcgtc
     1561 gtatttgtac tatagaattt gcacaatgtt gtatagaaag tccaaaatat aaactagagg
     1621 ttttgaaaga atttctgggc gtggaaaata cgcatcatag ggctttagat gatgctttgg
     1681 cagctgctga aattttgaaa tattgccttg gaaaacttcc ctatcatata aaaactacag
     1741 aagaacttat aaattttaca aagactgcca cgcataaagc aaaaataaat atttaaagtg
     1801 tataattaaa acataaatga cgggagcttg tgtaacaggc tgagagtaag ctaaaagctt
     1861 agaccgaacc ggatctggat aatgccagcg tcgggaagat ttataaattt caatacttta
     1921 aaaatttata ctcacccttc atttatccaa attttttaaa ggataaattt atgaaaactc
     1981 aaatgaatta tgcgaaagaa ggtattttta ctaaagaaat gcagattgtt gcacaaaaag
     2041 aaaatttaag taaagatttt ttgcttgaaa atattgcttg cggtaaaatt attatccctg
     2101 caaatattaa tcataaaagt cttgatccaa atggtatagg ttttggactg cgtactaagg
     2161 ttaatgtaaa tttaggagtt tcaaatgatt gcgttgatta tagcgaggaa atgaaaaaag
     2221 tagagcttgc tcataaattt gacatagaag cgattatgga cttaagcaat tatggcaaaa
     2281 caagtcgttt tagagacgag cttgttaatg tttcaaaagc tatgatagga acagttcctg
     2341 tatatgatgc ggtaggattt ttagaaaaag atttaaaaca aattggtgct aaagactttt
     2401 tagatgttgt atatcatcat gctaaaagtg gggttgattt tatgacaatt catgcaggta
     2461 ttaattctcg cgcagcgcat atttttaaac aaagtaaaag acttacaaat atagtttcaa
     2521 gaggaggctc tgtgctttat gcttggatga tgatgaaaga tgctgagaat cctttttttg
     2581 agtattatga tgatttgctt gacatttgtt taaaatacga tgtaacttta tctttgggcg
     2641 atgctttgcg tcctggctct actcacgatg caagtgatgg ggcgcaaatt tcagagctta
     2701 tagaattgtc actccttact caaagagctt gggatgttgg ggttcaagta atgatagaag
     2761 gtccagggca tatggctatt aatgaaatag aggcaaatat gcaattagaa aagcgtttat
     2821 gcaaaggagc gcctttttat gtcttaggac ctttggtaac agatattggc gcagggtatg
     2881 atcatattag tggtgctatt ggaggagctg tggctgcagc tagcggtgct gatatgctgt
     2941 gttatgtaac acctgctgaa cacttaagac ttccaaattt agaagatgtt agagagggta
     3001 tagttgcgac taaaattgca gctcatgcgg gagatatagc taaacttcca aaagaaagag
     3061 caagagatga tgagatgagt aaggctagac aagagataga ttgggagaaa atgtttaaac
     3121 ttgctattga tggagaaaag gctaaaaaaa tgtttaatga gcgtcgccct gatgatttaa
     3181 actcatgttc catgtgtgga aaaatgtgtg caatgaatac tatgaatcaa attttaaaag
     3241 gcgaagatgt gagtttagct tgaataaact ttgagagtaa gatctataga gatgccttgc
     3301 tctcctgctt taagattaag tggataatca agcttgatta agttattata gttttttaga
     3361 gcatcaataa aatcataaag tcttctagga ttgttcattg tcgctttaat ggctaagcgg
     3421 ttttttagat atttttcttg tttttcgggc ttagtttctt gaatttttac attttgaaaa
     3481 tatttttgta aaaaaatatc aaaatttcct atattaaaat tttgctcaaa ttgctctaaa
     3541 cttttgttgt tttcgcttct tagagttgat attttatctt cactaaagtc aaattttgat
     3601 ttagcggctt ttaagatagc aagttgtgaa ttttctctaa gatttgcttg tttgtaattt
     3661 tttaatgtcg gtaaaagtaa aaataagatc aaggctgtgc aaacgcttat aaaacttaac
     3721 gcgcaaatga taagctttaa taaatcaatt tcttctagac ttttatcttt catctgcaac
     3781 tcctggaatt tgtttactaa tactaacaaa acgataccac ccattatcta agcgataata
     3841 ggttgtatag ctttgatcaa agatgctttt taaaggggtt tctaaaagta gagtaaacat
     3901 ttctcttgta ggagtgactc cgataagttt taaggaatat tcgtcttgtt caacactttc
     3961 aagagtaata ttatcagttt ttacaataat atcaaataga tttcttaagc tttctttaac
     4021 aatttgattt tgagtgttaa aatttttcgc tatttggctt tgatcaaata aaatttcata
     4081 aagcatttca ttttgcttag tttgattttg aagcactata acttgttgtt tttcatcatc
     4141 gatagagcta ttgattaatg caatttttat tgtatatgta aaatatacta gcaagataaa
     4201 taatatacta aaaccaaaaa gtcctagcca aattttatca aagagtgtga aaataggttt
     4261 ttttcttggc tgtatgaagc tataagtcat ttaagctcct tttgcatcaa ttctatcata
     4321 agatctaagg tgttgatttg tttcgttttt atctctaaaa aagtttcact ttctaaaaaa
     4381 tcaatagcac ttatgttaat atctgattca ctatataata aaataccatt gataaatacc
     4441 ccagcatatt tatcatcatt ataaaatttt tcaatgctcg taataatata acggcatagt
     4501 tccatatcat tgctaaattg atttaattca tcaagattaa aattatcatt attattcaaa
     4561 gtttcaagat tattttcttg atcaagtaga tcaaatttat tatttaaggc ttcattgaag
     4621 ttatctaggg taacttcagt atcattgttg ttgttttcaa tttcttgatt atcttctgat
     4681 ggaagttcaa gctctaaacc taattcttgc tcaaatattt taaaatcacc gtataaaata
     4741 gtattgcctt tagcaacaat aattgccaaa agatgtcctt gcttaaatcc ataaagtaaa
     4801 atttgatcat caggctgttt ttctttttgt atattgtagt aaagaagagc aaaaggggaa
     4861 tataaaaaat ctaaacctct atattcttca aaaagctcgc tataatattc cacatgttcg
     4921 gtagccgtat aaacaagggc attattaaac aaaatatgct gtaagctgat ttttcctata
     4981 ttaaagtgct cacaatcttg aatatttgta ctaggtatta atccttgttc tttggcatct
     5041 aaaaataaag cagtgtggta aaataagaaa tgcttgctta aattttttat gtattctagt
     5101 aaattttcgc ttttatcaaa agttttttca ttgctactga ttagtttatt tcctctataa
     5161 atagaagctt ttacaatatt ttttttatct tctaaaataa tactaataaa aagttgtgga
     5221 aatatttttt taagtaaaaa taacatttca ttccttaaat tgatcagcta agctaatttt
     5281 atcaaattgt ttcattagaa attctttagc tttttcttta tctaaagata aaatatccaa
     5341 aggttcactt agactataag taatcttact aaaaggtttt ggcaagatca tcttatccca
     5401 acttttaaat ttccaaaaac gatttgcttc atagtttaaa attcttatct ttagttcttt
     5461 tttttgagcc aaaatgatag aaccatctga aatactatga taaggccctc gtggaccatc
     5521 gggcgtgata actatatcgt cattttgttc taaaacttta aatgcagctc taagtgcact
     5581 gctagcaccc cttgaagtgc ttcctcttac agtatcaaga ccgaaaagct tgatgatttt
     5641 tgcaatttgt tctccatctt tatggtggga gatcatgaca taggcttttt tatttttttg
     5701 tctataatgt ctaaacgcaa aaggcatgag tgctaatttt ccatgccaaa aaagtatcac
     5761 accagcttta cggtcaactt tttcaccttt atagtgcttt ttacagctta aaaaaataag
     5821 ccattgcaag atgaaaatta tatatgttaa gcaatggatt ttaaacgatt tccccatata
     5881 aaaccatacg ctttgcatta gttattttta cttctttaaa ttgccctaaa agttcttcgc
     5941 taccttcaac ttgaactaaa aaattattat ctgttcttcc agcaatgcta ttgcctgctc
     6001 ttaattcttc aaataaaact ttaaaagttt tattttcttg tttttttaca atttcatcta
     6061 aaatttcact atgacgattt tgtaaggtgc taagtcttct tgaagctgtt tcttcatcga
     6121 tttgattagg catggttgcg gcttttgtta aagggcgttt ggagtattta aaagaaaaaa
     6181 tttgttcaaa acgcactttt tccaaaatat ccatagtttc ttcaaaatct ttttcacttt
     6241 cccctggaaa agctacaata atgtctgtag aaatgctaac atttggacaa agttctctaa
     6301 gttttaaagc tctatttaaa taccattctt tagtatagcc acgcttcata gcttttaaaa
     6361 tttcacttga gccgctttgt aaaggcatgt gcatggattt gcaaactttt ggattattgg
     6421 caaaaacttc taaaaattta tcatccatgt gcaaaggatg tggacttgta aagcgaatgc
     6481 gttccaaacc ttctatagtg ctaagttctt ctaaaagatc tgaaaagtcc atttttttat
     6541 gttcgtttct aaatcttttg ccatagttat tgacattttg tcctagcaag aaaatctctt
     6601 tagcgccttt ttcaatagct ttttgagctt ctttgtagat gatgttaaaa ggtatggaaa
     6661 tttcatctcc tctagtatgt ggcactatac aataagtgca gtgtttgtca caacctatgg
     6721 agatattaat ataggattta taaatactat ttctaaaatc tgcaaaagca aattcacttt
     6781 catcatagtc tatgtccacg cccataaatt ttggagtttt tatagcttga gtgattttgg
     6841 aaatatttct tgctcctaga acaaaatcca cataaggagc acgtttgaaa atttcatttc
     6901 ctaaatgtga tgcagtacat ccacaaactc ctattttagc accttctttt ttaacttttt
     6961 caaaaccacc tacttctgag aaaagtttat gcacaggttt ttcacgcact gaacaggtat
     7021 tgataagaat aagatctgct tctttgatat cttctgttag tgcgtaattt tctttttgtg
     7081 ttaattctgc gatcatatgc tcagaatctc tgacattcat cgcacaacct aaagtttgga
     7141 taaaaagttt tttagcactc aaagaatatg tacctcatac ataaaatcat tatcatcaag
     7201 tccgtatttt acggttctat gataaatgct tactcctttt ttttcaaaat gatttacaag
     7261 ggcaatgagt tgtttgtgtg tattatcttt atcaaaataa aaaaactttt gtccttcttt
     7321 ttctatagcc tcttcgattt tttctaggct aatattttta ggtttttcat taatcaaagt
     7381 tcttgccaat tttaattcca tagctaaatc cttaagaatt ttcattttaa tctataattt
     7441 tagcaaattt tacttttaat taaacttatt aaggatataa tttttatcta catttttaaa
     7501 tttcccacaa aaaaggtttt ataaaatatg gaaaagatag cagatattat cgaatctatt
     7561 gctaatgaaa aaaatttaaa cttagagaat gtaagagaaa aggtagctac cgctttaatc
     7621 aatactgcaa aaagaattta tggacaagaa tatgagtttt ttgtggatcc taaaaattta
     7681 aatctttatc aaaaaattac catagtagca gataatgacg agagattgca aaataaaagt
     7741 gagagtttta tcgcgttaag taaggcaaaa tcagaagctc cagatgttga aataggagat
     7801 gaattaacct atgaatgttc tttggaaaat ttaggaagaa ctgcggtaaa taccttgcat
     7861 aaagaacttg aatatcatat acaaaaatta ttagaacaaa ctatttttga aaaatataaa
     7921 aacaaagtag ggcaaatggt ttttggtaca gttgttagag tggataatga agaaaatact
     7981 tttattgaaa tagatgaatt aagagctttt ttaccgagaa aaaatcgcat taaaggggaa
     8041 aaatttaaaa taggtgatgt ggtaaaagct gtgatacgcc gtgtttatac agataaaggt
     8101 attaaaatcg agcttagtcg tacaagtcct aaatttttag aatgtttact tgaagctgag
     8161 gttccagaaa tcaaagatgg ttatgtcaat attataggat gtgctagaat tccaggtgaa
     8221 agagcaaaaa tcattcttca ggccaatgga gcaaatatcg atcctgtagg tgctacagta
     8281 ggtgttaaag gtgtaagaat taatgcagta agcaaagagc ttcataatga aaatattgat
     8341 tgtatagaat ttacaaatga gagtgaaatt ttaatttctc gtgccttggc tcccgctatt
     8401 gtaaattctg taaaaattga agataaaaaa gctattgtaa gtttaaatag cgaacaaaaa
     8461 agcaaagcca taggaaaaaa tggtattaat attcgccttg cttctatgtt aagtggttat
     8521 gaaatagagc tcaatgaatt aagctcatcg cagctaaata atgccatcag caatgaagaa
     8581 gcaatgaaaa atcttcaaga tttgtttaaa atttaaaata tttgtgaatt ttcacaaata
     8641 ttttttataa aaccacttcc aataaaatgc cgcaaagata aaaatcatac ccaataagcc
     8701 tgtaattagt tctaaactca agcctatttc aaataaaaag cccataagca ttgaaataat
     8761 agcgctaaaa ctaagataaa tcatatctgt ataagcgatc actctaccat gatatgcttt
     8821 gtcagcattt ttttgtatca tagtgtaggt gtaagcccaa agtgctgagg taaaaaaacc
     8881 tgcaccgatt aaacctaaaa aagaaatata aaaattaaat tgagttaaag cccaaagtat
     8941 aataccaaaa ccttggccaa gatacatgta aaataaattt ttattattaa taaatttact
     9001 taaaaccata ggtcctatag ctaaagaaca agcacgtacc gcatttaaaa accctattac
     9061 taaagcagca gataaaactt ctttatattg atgttgcgct aaaagcgtaa ccaaggtttc
     9121 ataagcagtt aaacctataa aagcgtgaag caagataaga tgaaaaatta tcttattgtt
     9181 taaaacatag aaaaatcctt cttttatcat ggtaaaaaag cgactttgtg ttttttgatg
     9241 aaaatcagga atgcttaatc ttgctaaaaa agaaatgcct atgagtataa gtatacagtc
     9301 aaatagaaaa gcggttttaa ctcctagaaa ataaataaaa attcccgcac ttgccatacc
     9361 tgctgtataa gaaatcgccc aaatgacact gtgcatttca ttagcgagtt taagttcttg
     9421 aggagttaaa attttggcca ataaactcat ttcagcttga aaataaatcg aagcaacaca
     9481 aagtcttatg aaaattaaaa taaataaaag ccaaagcata ctaagacttg tgacaaaaat
     9541 aagacaaaaa atagaaatta attctatgct aatcatgctg agtaaaagtt ttttaggttt
     9601 atttttctct actatgacgc cattaatagg agcaagtaaa actccaggta aaaaagcaag
     9661 catagcactt gtagctgttg cccaagtagg agcattaagc tcaaccaaaa gggtaaaaac
     9721 tcctgtttga gaaaaccatg ctccaaaata tactataaac tgaaccgaag ctaatattct
     9781 gatattttta ttatttttta atagttcaat gtaattcata agcgaaacta tagcataatt
     9841 tatattttaa atgctataat tattttaatt atgtaaaaaa caaggaaaaa ttttgaaaag
     9901 actggataaa aaagaagctt tagatttatt acaccatgca agtttaacag aacttggaga
     9961 aatggcttat aaaagaaaat tagaacttca tcctgaaaaa atcaccactt ttgttgtaga
    10021 tagaaatatt aattatacca atgtttgttg tattgattgt tctttttgcg ctttttatcg
    10081 ccatcataaa gaagatgatg cttatatttt aagctttgaa gagataggca aaaagataga
    10141 agagcttgaa gctatcgggg gtacgcaaat tctttttcaa ggcggggtgc acccaaaatt
    10201 aaaaatagaa tggtatgaag aattagtttc ttggataaaa gaacattatc caaatatcac
    10261 tgtacatggt ttttcagcgg ttgagatcgc ttatatcgca aaggcatcta aaatttcaat
    10321 tactgaagta cttcaaagac tacaagctaa aggtttattt tctataccag gagcaggtgc
    10381 tgaggtgcta agcgataggg tgcgtgatat tatcgcacca aataaatgtg atacagctac
    10441 ttggttagaa gtacatcgcc aagctcataa aatcggtatg aaaagtacag ctactatgat
    10501 gtttggaacg gttgaaaatg ataaagaaat catcgatcat tttgagtatt tgagaaaatt
    10561 gcaagatgaa acagggggat ttagagcttt tattttatgg agctttcaaa gtgataatac
    10621 tgctttaatc caaaaacatc cagagattat gaaacaaagt tctaacaagt atttaagact
    10681 tttagcttta gcaagacttt atttagataa ttttaaaaat ttgcaaagtt cttgggtaac
    10741 tcaaggctcg cttataggtc aacttgcttt aaaatttggg gccaatgatt taggctcaac
    10801 catgatggaa gaaaatgtag taagtgccgc aggagcaagt tatagaatga atcaagatga
    10861 gatgataagg ctgattagaa gtttaggcga aaatccagct aaacgcaata ccgcttatga
    10921 aattttagaa aggttttaat gcagtattta gagagtaggg gtattaaaat cccttttatt
    10981 tttgaaaaaa attctgattt tcctattgtt gttttaaagc ttgtttttag aaattgtgct
    11041 agaagttatg atgaaatagc aggcttagct aagatgtttt cacgtatttt aaatgaaggc
    11101 gtggatgata aattttttaa ggatttagaa tttagagcga taaatttaga ggcaagtagt
    11161 ggttttgaaa gtttggaaat caatctttct tgcttgaaag aaaattttga ttttgcttta
    11221 aagagtttag aaaaattgct tttaaaacca agaatagaag aaaaaatttt gcaaaaatta
    11281 aaaatcaatg ccttaggtga acttgcgagt aaaaatagtg attttgatta tttagcaaaa
    11341 aatttactca atgctcaaat ttttaaatgt aaagaatttc aaagtccaaa cgatggagat
    11401 gaaaaaagta tagaaacttt gtctttaaaa gatttacaaa atttttataa aaattttatt
    11461 catcttagtg atttggttgt gattttagga ggagatttag aagaaaaaca agccaaggaa
    11521 gatcttttaa aactcttatc aaaacttcaa ataggcaaaa aaaatactcc aaaaaaatat
    11581 gagttaagca aaaacatcaa agatgaaatt ttgctacgcc cagaaagtga acaagcttat
    11641 atttattttg ctacaccttt ttttgctgat tttaaagata aggatttata tcttgcaaaa
    11701 attgcattat ttgttctagg gcaaggagga tttggttcaa ggattatgga agaaattcgt
    11761 gttaaaagag gtcttgcata ctcagcttat gctatgcttg atatgaatat gtctttttct
    11821 agagtttttg gatatttaca aactaaaaat gaaagcgcta aagaagctaa aaaaatcgta
    11881 aaagagcttt ttgaagattt tataaaaaat ggcatgactc aaaatgaact tgatcaagct
    11941 aaaaattttc tcataggatc aactcctttg cgttatgaaa gcttaagcaa gcgtttatct
    12001 atgtctttta acgaatttta tcaaggttta aatttgggat attataaaga agagttaaaa
    12061 cttatggaaa aggttaaact tgaaaccatg aatgcttata ttaaaaaaca tcaagagctt
    12121 ttaaatataa gttttgcaag catacaaaat gaaaattaaa gaaagtgatt ttgaattttt
    12181 taaaaaatta aaaattagaa gtgctattga tttagcgctt cttttaccta aaaaaattga
    12241 aaatttaaat ccaagtaaaa atcctaaaga aaatgaaatt tgcacccaaa aaatcactat
    12301 aaaaagcgtt agttcaagaa aaaatcaact ttttggttta ggtttttgtg aggaatggca
    12361 agaaaatatt tcttttgtgt tttttcatcc tagagcttgg cattttggta tttgtaaggt
    12421 aggaaaagag cttattttta atgctaaact ctcgcatttt aatcacactt ggcaatttaa
    12481 caatcctaaa attttaactt cttttgaggg ttttagtcca aagtatcaaa ttttaggttt
    12541 aaaagataca aaaattgctg cttttataca taaatatctt aattatgaaa atttaaaaga
    12601 aagtggcata gaggataaat atatacattt tcttttaaat ttgcatgctt atgatgaaaa
    12661 aagttttttt atgtttgaaa atttgcaaaa ttttagcaaa gatttaaaat atatagaaat
    12721 atataatttt ttaaagcgtt taaaagctaa aaaaacgcat tttaaagctc atcaaatcaa
    12781 tgtttttaat atagccaatt ggcttaaaga tttgcctttt tctcttacta aagatcagct
    12841 taatgcctta aaagacatag aaaaagattt acactcaaaa gaagccaaaa ggcgtgtgat
    12901 tatgggtgat gtagggtgtg gtaaaacctt ggttttactt ggtgcggctt tgatggttta
    12961 tcctaagcaa gctattttaa tggcacctac tagtatttta gcgtatcagc tttatgaaga
    13021 ggctaagaaa tttttacctg attttatgaa tattttgttt attaaagggg gtaaaaaaga
    13081 aaaagattta gaacaaaata tccaaaaagc aaatcttgtt ataggcactc atgctttaat
    13141 tcatttagaa agccataatg ccgtacttgt aatgatagac gaacaacatc gttttggatc
    13201 agctcagcgt gagaaaattc attctttaag taaacaagaa tttgcccctc attttataca
    13261 gttttcggct acgcctattc caagaacttt aagcatgata caatctgaac ttttaaattt
    13321 tagtttcatt aaacaaatgc cttttaaaaa agatatcaca acttattgta tacaaaatga
    13381 aggcttttct aagcttagcg agaagatcaa agaagaaatc gctaaaaatc atcaaattat
    13441 cattatttat cccttagtga gtgctagtga taatattcct tatctttctt tagagcaggc
    13501 taaagaatat tggcagagtc actatgaaaa agtttttgta actcatggga aagataaaca
    13561 aaaagatgaa attttagagc gttttagaga tgagggaaat attttactaa gcactacagt
    13621 ggtggaagtg ggcatttctt tgccaagatt gagtatgata gtgattgtag gagcggaacg
    13681 tttaggactt gctactttac atcaacttcg tggccgtgta ggtcgtgtag ggcttaaaag
    13741 tacttgctat ctttatacta agcttaaaga aattccgagt cgtttaaaag aatttgctag
    13801 cactttagat gggtttaaaa tagcagagct tgatcttaaa aatcgtttga gtggagattt
    13861 gctcgatggt tttatgcaac atggaaatga gtttaaattt tttgattttt ccaaggatga
    13921 ggagatttta gaaaaggcaa aaaaagattt ggcaaaaaaa ttgccaaatt aatgtccgcc
    13981 gtacttgtaa agcatatttt gaaaatgtga agctatcatt tgtgcacgct gtaaaatgac
    14041 atttttcatt tcttcattat aaactatatt taaactttct tcaaaaagtt ttagccaaat
    14101 ttcaaaaaac tcttgaggaa aaggaggtag atctaagtgc ttttttaagg gttgcccatt
    14161 ataatcacct tcgcctaaaa gcatgcctgc ccaaaaattt cctatttttg ctttatgttc
    14221 tttccattct tcatcgcttg ttccaatagc attgttaaaa ataggaccta aatccttatc
    14281 ttttctaact ttttcataaa atatttccat gagttttgct atgctttctt gattaattgt
    14341 ttcaaatttc atataagcct ttcttaaatg ttaattttat ggcgttaata tagcaaaaat
    14401 aagataaatt aaatttaaca taagttaaga atggaaatat tatataatga aagattattt
    14461 agaactttta tctagtgtag gaaaattaaa aaaatttcaa aaaaatagta ttttatttta
    14521 tgaaggcgaa gaggctaaaa aattttttat tttactcaag ggaaaaatac gcatttataa
    14581 aagtacagca agtgataaag aaattacttt gcattatttt aatcctccaa attttatagc
    14641 agaaatgcct gcttttaaaa aattaaatta tcctgctaat gctgtttttg aagaggatgg
    14701 agaaattttg gaaattgatt ttattaattt tcaaaattta tgcagtgaaa ataaagaatt
    14761 caatttttta cttatcagtt cactttttga taaaattaaa attttagaaa agaaattatc
    14821 tcaaaatgca ttagatttaa ggacgagatt attaaagtat cttttggaaa atgaaaaaaa
    14881 tttagataca atttcacaaa aacaaattgc aattgattta aatgttagag cacaatcttt
    14941 atctcgagtg ttaaaagaac ttaaaatttc agaacttatt gatacaaaaa aaggtagaat
    15001 tgaaatttta aataaagata tgatcatgaa agaactttgg taaaatttaa ggtagagaat
    15061 ggattttgat tttatattag ctcaagctcc tgctttttta acggctgctt ggcttacgat
    15121 aaaactaagc ttttttggaa ttattttttc tttgataata ggtttgtttt gtattttaat
    15181 gagttatttt aaaataaaaa tttt
//
LOCUS       DARGEM010000032        15127 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.032, whole genome shotgun sequence.
ACCESSION   DARGEM010000032 DARGEM010000000
VERSION     DARGEM010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15127
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.032"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..590)
                     /locus_tag="SFZ78_000748"
     CDS             complement(<1..590)
                     /locus_tag="SFZ78_000748"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211644.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNNEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKL"
     gene            811..1650
                     /locus_tag="SFZ78_000749"
     CDS             811..1650
                     /locus_tag="SFZ78_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8211645.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKENNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            1691..2938
                     /locus_tag="SFZ78_000750"
     CDS             1691..2938
                     /locus_tag="SFZ78_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211646.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(2921..4189)
                     /locus_tag="SFZ78_000751"
     CDS             complement(2921..4189)
                     /locus_tag="SFZ78_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG8211647.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEIKSNNWIKCEFKEEGEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            4257..4784
                     /locus_tag="SFZ78_000752"
     CDS             4257..4784
                     /locus_tag="SFZ78_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG8211648.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            4793..4966
                     /locus_tag="SFZ78_000753"
     CDS             4793..4966
                     /locus_tag="SFZ78_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211649.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(4967..5545)
                     /locus_tag="SFZ78_000754"
     CDS             complement(4967..5545)
                     /locus_tag="SFZ78_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211650.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(5618..6508)
                     /gene="cmoB"
                     /locus_tag="SFZ78_000755"
     CDS             complement(5618..6508)
                     /gene="cmoB"
                     /locus_tag="SFZ78_000755"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG8211651.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(6591..8319)
                     /locus_tag="SFZ78_000756"
                     /pseudo
     CDS             complement(6591..8319)
                     /locus_tag="SFZ78_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(8378..8518)
                     /locus_tag="SFZ78_000757"
     CDS             complement(8378..8518)
                     /locus_tag="SFZ78_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211652.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(8506..10144)
                     /locus_tag="SFZ78_000758"
                     /pseudo
     CDS             complement(8506..10144)
                     /locus_tag="SFZ78_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(10514..12503)
                     /locus_tag="SFZ78_000759"
                     /pseudo
     CDS             complement(10514..12503)
                     /locus_tag="SFZ78_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            12931..13305
                     /locus_tag="SFZ78_000760"
     CDS             12931..13305
                     /locus_tag="SFZ78_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8211653.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(13297..14487)
                     /locus_tag="SFZ78_000761"
     CDS             complement(13297..14487)
                     /locus_tag="SFZ78_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211654.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(14484..15092)
                     /locus_tag="SFZ78_000762"
     CDS             complement(14484..15092)
                     /locus_tag="SFZ78_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG8211655.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFGLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWSELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
BASE COUNT         4859 a         2142 c         2300 g         5826 t
ORIGIN      
        1 tttaattttg cgttataaaa ttttatatca agattatcta gataattgtt ttcttgtttg
       61 tttatagagt tatcaaatga taaagtataa gaatccgagc ttaatttatt gataaaagat
      121 ctgatttttg gatcttgttg aaataagctt gcattgatgt cactaacaac tttttctcca
      181 agtttaaaat cttcaaaaac caaatttgat tgtatgcttt tttggttttt aaaaagatcg
      241 ttgtaatatt ctttaatgct aattgatgca tttgcttcgc ctttgtaaat ttcatttgag
      301 cgaattttga tattttttgc ttgaaatagt tcttgatact cattgttatt atcttttgca
      361 agagttttga aatttggact taaacacgct ataaaatcac catctgcatt gcatttaaaa
      421 tcagaaaatt caatctttat tccagagtcc tgagaaagac ttgcaatttc ttgtttaact
      481 gtttgattta gttgattttc atatttttta actgtttttt catctatgga atttccgcaa
      541 gctgaaaaca aaacagctat tccaatagag agaaaaatac cttttttcat agttttctcc
      601 ttaaaaaatt taaaaaaaag attatatctt tttttactta aaatttaaac aatactaaaa
      661 gagagtgtgt gattaattac atttttacac ataggaaaat ctttttagtt tgtttcaaat
      721 gcattattta taattttaag tataattaac tttgcaatta ttatatattt ttgcaacagc
      781 tttaagctta tttttaaaga aaggaaatgt atgaaaaaaa tacttctaag tgttttaacg
      841 acctttgttg cagtagtatt ggctgcttgt ggaggaaatt ctgactctaa aactttaaat
      901 tctcttgata agatcaagca aaatggagtt gttaggattg gggtatttgg cgataaacca
      961 ccttttggtt atgtagatga aaaagaaaac aatcaaggct atgatatagc tttagctaaa
     1021 cgcatagcaa aagaactttt tggcgatgaa aataaggtgc aatttgttct tgttgaagct
     1081 gcaaataggg ttgagttttt aaaatcaaat aaagtagata ttattttggc taattttact
     1141 caaactccgc aaagggcaga acaggttgat ttttgcttgc cttatatgaa ggtagcttta
     1201 ggcgtagctg taccaaagga tagtaatata actagcgtag aagatttaaa agataaaacc
     1261 ttgcttttaa acaaaggtac aacagcagat gcttatttta cgcaaaatta tcctaatatt
     1321 aaaactttaa aatatgatca aaataccgaa acctttgccg ctttgatgga taaaagaggc
     1381 gatgctttaa gtcatgataa taccttgctt tttgcttggg tgaaagatca tcctgatttt
     1441 aaaatgggta tcaaagagtt aggtaacaaa gatgttatcg caccagcggt taaaaaaggc
     1501 gataaagaac ttaaagaatt tatcgataat ttgatcatta aactaggcca agagcagttt
     1561 tttcacaagg cttatgatga aactttaaaa gctcattttg gagatgatgt taaggctgat
     1621 gatgtagtga ttgaaggtgg aaaaatttaa taaagggctt tttgcccttt atattgattt
     1681 aggataaaat atgcaaaaaa aatacaaaaa tattatttat gcttctttgg gtggaatttt
     1741 agaattttat gattttgtgc tttttgcctt ttttttggat atttttgcta aggtattctt
     1801 tccgcaaaat gatgcttttt ggatgcagat aaatgcttat atagcctttg gtgctgctta
     1861 tttagcgcgt ccttttggtt ctattgtgat ggcacatttt gctgatagat atggaagaaa
     1921 gaatattttt tatatttcta tgcttttgat ggttttgcct agttttgctt tagctttttt
     1981 accaagttat gaaagtatag gtatatttgc tactttgatt ttatttacta ttcgtatttt
     2041 gcaaggttta gccgttggaa ctgaggtgag cggagcttgg atttatgtga gcgaatttgt
     2101 taaagggcgt caaattcctt tggctcttgg ttttatttca gcgactttaa ccataggttt
     2161 attgctagga aatattgcca ctttaggcat aagatcttat tttaccccag aagaagttca
     2221 aagctatgct tggagaattc cttttatcat aggaggattt tttggaattt tagctttgtt
     2281 tttaagaaat aaactcagcg aaactccaga atttataaaa gttcaaaatg aaaagaaaat
     2341 tttaagtttt ccattgtttg aagctttgaa aactcataaa atgagtatgc ttgtttgttt
     2401 tttaatgacc atggttttaa caagcggtgt ggcaactttg atgattttac ctaagtattt
     2461 tgaaagtctt ttagctatga gtaaaacttc tgctttatgg gtgcaaaatt ttgctatttt
     2521 agcggtgatt tttggagctt tatttcaagg ttttttagca agcaaatggg gaagctatag
     2581 gatttgtttt atttttagta tagcttttat tatttttggt gtgcttttta gtttttatga
     2641 tgagaatttt ttattttatt ttttactggc ttgttttgca caaggtatta ttactttcgc
     2701 gcctgttttt atgacgcaaa tttttaaaag tgaactgaaa tttagcgggc ttagttttgc
     2761 ttataatatt tcttatgcga ttttaggttt tttaacccct tttatagtta atgcttttta
     2821 taaagagtat ttgggtattt atcttgctat agtgggatct tgttccttgc tttgcgtgtt
     2881 tttgttaaaa cgcgtttttg caagaagcaa gattaaagaa ttaagcattg tcttttaaaa
     2941 cttcaaaaac aaccttagat attttttcaa ctgaagcgat ttcacaatgc tcatcagttg
     3001 aatgaggatt atggatattt gggcctatag aagcgcataa aagctcttgt tttttctcta
     3061 taatgccaca ctcaagccct gcatggatag ctgaaacttt ggcattaggc gatacttttt
     3121 taagcgcttt aaaaaccatg tcgctaagtg cgtttggttt gccttcccaa ggtggataga
     3181 aattaaaact tcttacttta aaatcaaaag ccttgaaaaa ttctaaagtt tcaaattcta
     3241 cttgcttaag tccatcaagt atattagatc ttgcaaaaag tgcgaatttg atttggttat
     3301 cttgcattct taaagtagct aggttaatgc ttgtttgaac tatatctaga ttttcatcat
     3361 aagctctaac tccatgagtg aaagaattta taaggcttaa aagtttttta ctttgatcgc
     3421 aaatttcaaa ttcgccttct tctttaaatt cacattttat ccagttatta ctctttattt
     3481 catctttaaa atgcactaaa gctttggcgt gtttaggtat agaattgatt ctttctccgc
     3541 cttcaaaaga aatgatttct ccttcatttt cttgtatgaa tttagccatt tctttgatgg
     3601 aacttttttc attgcgtatg atatttatgc ctgagtgtcc acctttaaaa ttttgcgcac
     3661 aaagctcata aattttaccc ttttttctaa gggtattaaa agacaaactt gcttctatat
     3721 ctactccacc tgcacagcct atcatgatct catcatcgct ttcatgatct aaatttaaaa
     3781 gcattttaga ttctaaagtg tgctcgagtg aattcactcc catgagtcct acttcttcat
     3841 cgtttgtaaa aagacattct aaattttcaa attcagccat agcactcatc atgatggcta
     3901 tacctatgcc attatctgca ccaagacttg aatttttggc tcttaaaaag ccattttctt
     3961 cataaacttc taagtttggt gcatcgccca tacagaccat atcataatgg ctttgtagac
     4021 aaatttttgg tttgcctttt atggcatgga tatttcctgc cttatctaca ctcaccttaa
     4081 agcctttatc tttggcgtaa gagcttaaaa attctttcat ttgttctgtt tcataactgc
     4141 aatgaggaat tttgcataat tgtttaaaat tttctataac attttgcatt ttatctcctt
     4201 tgttttgata aaattatggc atatttttta aaatttaaag gcaaaatgat taaaaaatga
     4261 gaataaatta taaaaaatta tttaatctaa gaaaattatt aagtgatcca aaaaaacttt
     4321 tttctgtatt aatcttcact cttgtagttg tttttatcca gaactatatt gcccaaaatt
     4381 ctagttttga aggaaaagta gttagaatta ttgatggaga tactatagaa gttaatcatg
     4441 aaaacaaact cgctagaata agattttttg gtatagatgc accagaactt aaacaaagtt
     4501 ttggaaagca gtcaaaagaa gctttaagta gaattttaag tggcaaacaa gttgaaatta
     4561 tttataaaaa taaagatact tatggtagaa ttgttgctat tgtaaagctt aatgatgttg
     4621 atattaatcg atttttggta agcaaaggct atgcttgggc tgatacttac tatagtaacg
     4681 cttataccaa agaacaagaa aatgctaaga aaaatcattt aggtctttgg aaagagagta
     4741 atcctataga gccttataaa tggagaaaac acaataaatt ctaaggaaaa acatgaaaaa
     4801 atatacttta atggtgctat tagctttagg aatttctgga tgttttgtaa atgaaagagg
     4861 gatttcaaat cgtttttatg atgattgtaa agagtattat gatggaagtg gaacttatca
     4921 taaggattgc ccaaaaaatt gggtagatat taaaatgact ccttgattat tttccaccca
     4981 cagaggccat taatgcagct gctacagctt ctggattgtt gattttggca ccttgttctt
     5041 gattttctgt aggtttaaca gtgttaagtg gcggacgctt gagtttaaat atatgctcat
     5101 cggtgctaac aacttgtatc gttccttcaa acattttaac ttctttaaca tgtccaacca
     5161 cttttacatc tctttttttg gaggtttcgt caaaaagtgc atgagcttca agttctaaaa
     5221 catcgcctaa tttaagcgga gcataaaaaa aacattttga tccaataatc actgaaaatt
     5281 ctttattgat agaggcttgt gctacatagt ttgccgcagc gaaaataaag gcatcaaaaa
     5341 tcaatccttg atcatctgct accatttcgc ttgtggttat taaaattgat ttggcatagt
     5401 ttttatcaat ttctataatg gttccagcaa gagaggtgtt taattcagga caagtgagta
     5461 attctgctct aacgcgagat atatcttctg cagatgcgta ttcttcaagt tgtgcatatt
     5521 cttcaaaatt atcttttttt gccatatcta acctttaaat tctacttatc tacttcaaaa
     5581 tatctaattt tcaatatcgg taaaaaataa aaagaattta tattttaatg cgtatataaa
     5641 ctcttttggg tgcttcatag ccttcaatgg taagattttt atcctttgga tctaagaaat
     5701 tttccagcga aaaagagtct atccattctg tttttctttg ttcgttttca tcggtttttt
     5761 ttgtagccaa aacttcaaat tctttaaatc ctgctctttc acaccagttt tttaatgcac
     5821 taatgcttgg tacaaaataa atatttggaa ttttagaata agttttatta ggcacaagag
     5881 cgatttctct ctcatcttct atatacatgg tatctaaaaa aacaactcca tttttattaa
     5941 gtcctgcttt taaatctttt agcattttta taggatcact tctatgataa atcaccccaa
     6001 gacagaaaat cacatcaaat ttcaagccat agcttggaag atcttctacg cctaaaagtt
     6061 cgtattttat aggagtttta gctaaagcgt taatgagttc aaattgcaaa cggtatttga
     6121 tagaaggatc aaaacctatg agttttgcag gattaaattc aagcatttta aacatataat
     6181 aaccattatt acagcctata tcagcaacgc atttttgaga aatttcgttc atgaaaggct
     6241 ttagaatgtt gaatttaata aaactttgcc attctgtatc gatgaaaaga tcgtctattt
     6301 taaaaggacc ttttctccat ggtttaagtt cttttgctat agctaagatt tcatctttgg
     6361 cttgagaatt tgtagataaa tttacactat catctaaaga aaaattacaa gcaagattga
     6421 gagctttaag ttcttgaatt ttagcgtata aagggtgatt tagaaattgt ttttcaagta
     6481 aattttcttg catttttatc cttgacattt gcttttaatg ctaaattata acattaaaag
     6541 cttttatggc aatataaatt atatgcatta aatatttgat caaaaataac tcaaaaatac
     6601 tttctaaaga ttacataagc tttagaacta taatcatcat ctagcttata cttctttaaa
     6661 gctctagcta aatcaagctt gacataaaaa ttccctgttt tattataaag cagttgtaaa
     6721 ccataagcat ctatatagtt tgtataagaa tcattctcat accaagaata acttatatca
     6781 taaaaaggag taatataaaa aatcttttaa aggagtagcc attctaagtc caaagctggc
     6841 cactacagca ttatctcatt attataagcc cttactccat aaggacctcc taaagatatg
     6901 gtttcactac tatctaatgt agatccattg ataacttgtt gataatttaa actaaaaaga
     6961 tgagtaaagg tatcattaag gaaataagca ttgttaagat tgacattgag tttagcaaat
     7021 tttccaaagc catctccatc tgttttagaa ctcattccta atatagtagt tcccccatct
     7081 ttaacattat catagcttac attagcacta taagaaaaac tatcattact aatgccatta
     7141 taaactcctt ctataccaaa gcttatcgta tcagagcttt tatctatagt catgatattt
     7201 aatcttgaat tactaagctt tttatgataa taacttgaag ttaaataaaa agaattataa
     7261 gtcgtaatcc acaaaggata ttttaaatct atacctagat tttcagaagt tcctataaag
     7321 tttgcatttt tataagctcc tcctaaagca tagtttcttt tagaataact tcgagtgatt
     7381 tttaaattcc ctaagaaagt agtatagctt ataccatagt tagtttgtgc ttcatcgctt
     7441 ctttgcaaat aagcattaag actatctctt tgatgagcta tgttattaaa actcatacta
     7501 gcaccacccc tattatctgc ctgattcttt tataccgtaa ttatctccat aaaacaatac
     7561 agaaacaaag ctatcactag gggtagtttc tatcactata tctgtgtcac ctagattatc
     7621 tcctgctttt aaagaagcaa gggtttgtat gccatacatt tcattgactt tataaaccgc
     7681 atcttctact aatttagtag tgatgatttc acctttatga ttaggtaatt tgctttctat
     7741 agtataatct cttacactag aattgttttg aaccacatat ttacctaaaa cacctaaggt
     7801 gatattgatt tgaatttgat cttttagttc ttgttgtggg atataagctg tagcagcagg
     7861 ataaccacta acttgaacat aataagaaat aatattggct atatcttgta agtcttgaac
     7921 tgaaatactt tcttttttgt aatcgtttaa ggcttcttgt aaaacttgct catctaaacc
     7981 tagatcttta aagtttatgt ttttattggt aatatgaaag ttaaagctaa ctttatgaat
     8041 tgattcttct ttagaagtat tttttaaaga aggagtgttt gaatttgggg ttttagtttt
     8101 taaagtatta tcattagaca agttaggttg atttttttga atgttgttat tatctttttg
     8161 agtgtttttc tttgtgttgg tggtttttga attattatta ttattattat tatcactagt
     8221 attagaatga tctatgataa tcactccatc ttttactttt aaagtgttat tgtagttttt
     8281 taagttagca tcttctttat aaggagattg ttctaacatt tgtatggttt ttttattatc
     8341 tttagtatca ctagcataaa ggcttaagat agctaaacta gatagtaaga taatgcgttt
     8401 tatttaaatt ttccttagtg tttgtttgat ttttaatctt taaactttgt ttgtttttta
     8461 attttttaac aagatccaaa aggcttttaa ccttttggat tttaatcatc ttgagcaagg
     8521 atttcctgct ttaaaattat ccgatactat acaacattac cactttcttg agtactggct
     8581 tcatctatac ttgcttgttt atcatcttca ttgatatttg gatcttcatc tgtagtttgt
     8641 ataaaaagct gtagcaatgc caggttcttg ttgtcctatg gtatcatttg ggttattatt
     8701 agaaccgttg ttgttgctat tgttaatatc acctgaatcg gttccatcgt ttccgttgtt
     8761 ggagttgtta gatcctaaat ttataatgga tactggctta tagtttgcac tatattttca
     8821 ttgactgtaa gatgactagt tccatttatg ctcgcacttg ctaaagtttt attagaattt
     8881 tctaaactag aattagtatt cgctgtagcg atttgaagag ctattgtagc ttgttgtaaa
     8941 tcactagaaa ctttatctac agcttgtttt aaacctgcaa taactttatc gccattatta
     9001 cctgttatac cacttagagc tgtattgtaa gctttaactg cttcattata agcatttgca
     9061 gcagtatcgt aagttttttg agcgttttct tgcccttcgg tcattttagg aattttgaga
     9121 aagaatttcc tttgttttaa taatggcttg attagctttt cctagatcac cataagaatt
     9181 tcccaatact tcctttaaag cgtttgcaaa tgttgcatta ttgctatctt gagtttgtcc
     9241 atataaagca gtaataaaat ccatactttg attatgcttg ttagttcatc agctgttaat
     9301 atttttccat ctttataaaa tttacttaag tcgctaatat caacactaga attaaatttc
     9361 aagtcattaa atatagaatt taaaacttca tttgagatgt tatctttagc aataagatcg
     9421 ctagtttctt tatagcctat tgtgtctgtt ggatctcctc ctggtccagt taagccttta
     9481 ttagatctta tactcaatat tacagagtct tcttttttat tgtatttgat gcaggaccac
     9541 gaatgacaaa tgtatcatta ctatagacat taagatagac ggtattggat tgttcttttt
     9601 tatttgtaaa aatgaattta ccataatcag tgccaccata tttcatattt gaaacttgat
     9661 tgcctgccat agcaactctt tctcctaccg ttatagtttc taaatttata acatttcctg
     9721 cattggattt aattacaggt gatattgttt taggatttcc tttaaatgct gaaagttttc
     9781 catcttttgc aaactccttc atctccttat cacctattga tgaagcagac agaacaattt
     9841 ttttccacct ttacccacta ctatgccatt aggattgatt aaaaagatat tattgcttcc
     9901 gctattgagt gttccatcta taatgagagc ttttagaacc atagacaata tttaaataat
     9961 tttggttagt ttttccttgt ccaaaattta cagtttcatc acttgctata ttaaaaccac
    10021 cactaacact tatacttcca cttgttccat gagtgaactt acccccactt ggtaaagcat
    10081 agctttgtgt aaaaagtaaa gaacctacaa ctaaagacaa agaaagttta tttaactttt
    10141 tcatgacttg ctcctttttg taagattaag atttaagaat cttttgttta tatttataaa
    10201 aatacaaata aattattcct atcttaaaga taggaataat ttattttatc cttgcgtaaa
    10261 tgcttttgcc atcttgagat attcttactt cataagaaag tttttgtaaa ttcatctttt
    10321 ttaatttatc tatagaactt agtttaaaat cttctttgtt tttttgcatt ttttcaataa
    10381 agctttgaag ttcttcttga tttaaagtat tagagttttc atctataaaa ccttgctcac
    10441 tttgtaagat taagatttct ttatttttaa tataggggta ttactctttg agggtgtaaa
    10501 gagctaatac tccttagcta gaaatattaa taggagcatc gtatgacttc aaaaagggga
    10561 gttgtgttga ttttattgga tacaataaga taataatgct caaagttatt aataattcta
    10621 gcttcaactt tagtatttaa aatcagtcta ttgtttttac ttaaactgat atctgaagga
    10681 gctatagcat tagaagtact ataattatct tcataatgta ctaaggctcc tgctaatata
    10741 tctatgaaag tgtttttaaa tatatttaaa ttcccgccta tataaggtat tattataaga
    10801 tttagcttca cttaaacctg taatggccga aggagctata aaaacagaat tgttattttt
    10861 atactcatca agattgagat tgtttatgat taaggtatta tcatggccat tgtttgaaag
    10921 tccagctata atacttaaaa ttccttctct tttatctgaa gctacaccaa ataaagtatc
    10981 attgataatg attttattat aagcagcttc attataagcc ataatcaaat aagcattatc
    11041 agctgcatta gaagaatagt tttttatatc tatggtatta tgattggctt tatctaaagc
    11101 tcttatgatg attttagaac ctttatctgt attacttgta tcagtaatgc tttgaacatt
    11161 gttataattt atagtattat aagaagcttc tttggcttct gttaatacag ttagatttct
    11221 aaaagaagca aaatctttaa tcgatacttt attgttatta gcactactag gataaaagtc
    11281 ttgattatta agaaggtttt tcttagctgt ataaatgtat acaggtaagg ttgacataga
    11341 attattaata taaactttat tataatccgc actgccttct aaggttctag cagctataat
    11401 atttaaagca tctttatagc tttgagaaag atcggttgtg gtaagatcgt ttttaatgtt
    11461 aatggtatta tgattaactc ctttagttgc aaagtcacca taaaaagaat gttggttata
    11521 acctaagaag ttattagcga tttctaaagg atgttttaat tctatgttta aggtattata
    11581 atttacttct ccattattat aagctcctgc gtagaagtta aacaaagctt gagcaaaaat
    11641 gttcccattg tttttatttt tttaggtttt taatatcttt taatattgat agtattatct
    11701 aaggcttgtc cttgttcggt ttttccaccc aaaaaatcag caaataaaac agaattataa
    11761 gctaagggtt gtttatcatg gttcatatac atatcaagat taaaactatc tatgtctaaa
    11821 aggtttttac tggcttgaaa gtttttatct gattcgctat ctatataacc tgcgctaata
    11881 tgagcagcag ctaaactagc ataagctttg cttggaccat ggataatcat attagcatct
    11941 ttgataaaga ttttattgtt ttttacatta ccttgataag ctaaaccacc tacaaggtga
    12001 gtgattcttt catcaaaggt attattacca tttttatctt ttttaggcaa gaaagtaaaa
    12061 aactctacac tgctacctgc ttttatattt aaactattat ttgtagaatc tccataagtg
    12121 gttatagctc cgattaaata aggagaacca tttaaggcta aatcataagt gttctcaact
    12181 cccatactaa tatgggcatc tttttgaagt atggtttggt tatagcttgc attactataa
    12241 tgagtaaagg tagaactcat taagaaattc atgcgttgat tgcttttaga attactaggg
    12301 tttttatatg agtatcttta ggtttaagat aaaaaaccga actaagttct ccttgttcta
    12361 atataagttt gttataactt gcatcagcat gatcggtttt tgctgtgatt aaaaaaggaa
    12421 gcactctaac tgttttttat actacgatcg gctgtattaa caccatgcct tgctttaaaa
    12481 gaaagaaatt catcttctct catatcagga gtaagtaaat aatgtttaaa atttaaatcg
    12541 tttatatttg taatatttgg tttatgattg ttaaatattg ttaatatatt gtttagaact
    12601 cttagcataa taatttatac cttggaattt tttataagta gaattggttt tatcataaag
    12661 ttcgttatca ttaaaataat gctttggaat attgaaattt cgattgtctg tagtatttgc
    12721 ttgagtggct gcaaaagcgt tgatgcttaa gaaggtaaca atggaaagtt taaaacaaaa
    12781 tttctctata ccccctccca gtgaagttaa aaagctttat taaattaaga ttggacggaa
    12841 tttttaatat aaactaaaaa gcgatatcaa agaatttccg ttgtataatc taatgttttt
    12901 taaatgtgaa atatttttta aggtaaagcg atgaaaatgc gtgtgtatta tgaagatact
    12961 gatgcgggtg gagtggtgta tcatagtaat tatttaaaat tttgcgagag agtaagaagt
    13021 gaaatttttt tcaataaaaa agtagatatt tttgatgcgt ctaagggaca ttttttactt
    13081 acaaaagcaa attgcaattt cttaaaacct gcaaaacttg gagatatgat agagattaaa
    13141 acaaaaattt tagaagtcaa aaatgcttct gtggaaattt tacaagaaat ttataaagat
    13201 gaaattttgt tttttaaaat ggaattaact ttagctttta ttaaaaacga aaaaccagct
    13261 agaatggata tgcagttaaa aaagctcttt gaagaattat tttaattctt caaagcttgc
    13321 ttgcttacct tgcataagac gcactttgta atcaacttga gaatttttga ttttctcatc
    13381 aaataaactt tcgctttttt tatttaggaa ttcggtataa aagtaatcaa ctcctatgct
    13441 agtagcataa gcaatccagt tataatctat actttgatta aaaatttcat taagatagac
    13501 taagttatca tcgtggttat tgatagaatt agcaatgata aaattttctc tatctccttg
    13561 ttgtgttaaa cttaaaaatg ttggattata gttgatttga gtggataaaa gcacataagg
    13621 atgaatgtta taaattctta gttgagaact tgctagagct gttttgatca atggagcgtt
    13681 aaaaaatatt gaggcattat taactccacc ttgtgatctt aaaagtctgc tgaaatcaag
    13741 cttctcgcct tctatggtat atattctagc attattattt tgagcaagaa ttcttgaatt
    13801 tagattgctt gataaggcag agccatcgct aaatattgcg atattagcat ttgatttgct
    13861 taaaagtgtg gcaatttgag catcatagtc aatacttcca aaaataatat tttgatttga
    13921 aatttgtatg ttgtttttat ggatagtcgg tatgaaaatt ttcatatttc ctgagtaatt
    13981 tttcaactca ttagcacctt ttaaggtaaa tccagctatg gcatactgat atccttgagc
    14041 ttgtgctgca tcaagcgcgg ctcgaatttt atcactatct tctgtgccgg ttaaaaaaac
    14101 ttttactttg atttcagctc tttgtcttaa aagataggct atgcttgaat ttattatagt
    14161 atttgagtag ctttttatgg ttttttctgg gataattatc gcaagtttga cagaagtaat
    14221 tttttgaaca tttttttcaa aatcagtaat ggaatttaat aattttgcat aaacattaga
    14281 taaaaattga tcgttttgat ctgcaaattc acttaaaaaa ctaagatata atcttgattc
    14341 taaaagatca aaaagacaat ttgtgttgca ttcttgaacg cttaatttag gataaaaatt
    14401 ttcaacgggt tttacatcga ctaatttttg ctcttttgca ttaagcaaaa agcaagataa
    14461 gaaaaatatt aaaaatattt ttttcataaa aatcctttaa ttttttttaa atcttgtata
    14521 aaattttttt cataacttgg atttttttct ataaaatcta aatcataact tggcattatg
    14581 aaaaaatttt tataagcaaa aacttcacct tttaaaatgt gataatcttt aaatcccaag
    14641 cttttaaatg tatattctcc tagacaaagc aaaaaagcag gttgaatcag ttttagttcg
    14701 ctccagaaaa atggtaagca agattgtagc gaaaaatcat caaattttcc attacaaaaa
    14761 catttaaata aataagaaaa ataaaaatct tcatcgcaaa gccctaaaat ttgataaata
    14821 tagtgtttta atttttcacc tttttttgaa ttaagtaaaa ttccgctttc attttcactc
    14881 ttttgcccaa aaacatcaag aattagcaat ttggcatttt ttatcttagg ctccataaga
    14941 ccaaattttc ttgttttgga aaattggcat aaggtgcaag atgaaacaag ttgttttaat
    15001 tcttgaaaat tttgtacttg ttcaaagtgg tttgtatgtg tatcaacaaa gttaaatccc
    15061 atagctttta aataataaag acttcttatc ataaatcaca caatttttct aaattttctc
    15121 cacttag
//
LOCUS       DARGEM010000033        15014 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.033, whole genome shotgun sequence.
ACCESSION   DARGEM010000033 DARGEM010000000
VERSION     DARGEM010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15014
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.033"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..731
                     /locus_tag="SFZ78_000763"
     CDS             <1..731
                     /locus_tag="SFZ78_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG8211656.1"
                     /translation="NHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTKEGVIF
                     SYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLE
                     QAKMFTKIAALCLENKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPS
                     ENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFE
                     DGKEIKFIKSQGISVENESLKIIF"
     gene            797..1213
                     /locus_tag="SFZ78_000764"
     CDS             797..1213
                     /locus_tag="SFZ78_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8211657.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
     gene            1473..2723
                     /locus_tag="SFZ78_000765"
     CDS             1473..2723
                     /locus_tag="SFZ78_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEG8211658.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            2738..4102
                     /locus_tag="SFZ78_000766"
     CDS             2738..4102
                     /locus_tag="SFZ78_000766"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG8211659.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(4110..4631)
                     /locus_tag="SFZ78_000767"
     CDS             complement(4110..4631)
                     /locus_tag="SFZ78_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211660.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(4612..5622)
                     /gene="ribD"
                     /locus_tag="SFZ78_000768"
     CDS             complement(4612..5622)
                     /gene="ribD"
                     /locus_tag="SFZ78_000768"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG8211661.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(5828..5915)
                     /locus_tag="SFZ78_000769"
     tRNA            complement(5828..5915)
                     /locus_tag="SFZ78_000769"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5879..5881),aa:Ser,seq:tga)
     gene            complement(5937..6010)
                     /locus_tag="SFZ78_000770"
     tRNA            complement(5937..6010)
                     /locus_tag="SFZ78_000770"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5976..5978),aa:Cys,seq:gca)
     gene            complement(6029..6117)
                     /locus_tag="SFZ78_000771"
     tRNA            complement(6029..6117)
                     /locus_tag="SFZ78_000771"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6081..6083),aa:Leu,seq:taa)
     gene            complement(6127..6201)
                     /locus_tag="SFZ78_000772"
     tRNA            complement(6127..6201)
                     /locus_tag="SFZ78_000772"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6167..6169),aa:Gly,seq:gcc)
     gene            complement(6273..7025)
                     /locus_tag="SFZ78_000773"
     CDS             complement(6273..7025)
                     /locus_tag="SFZ78_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211662.1"
                     /translation="MLAFFKGLSVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNNLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISEKEQILNAKALFICK"
     gene            7098..8117
                     /gene="mutY"
                     /locus_tag="SFZ78_000774"
     CDS             7098..8117
                     /gene="mutY"
                     /locus_tag="SFZ78_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG8211663.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFNTEFYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFQTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(8103..9361)
                     /locus_tag="SFZ78_000775"
                     /pseudo
     CDS             complement(8103..9361)
                     /locus_tag="SFZ78_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            9527..10384
                     /locus_tag="SFZ78_000776"
     CDS             9527..10384
                     /locus_tag="SFZ78_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG8211664.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSNISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLYQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(10381..11187)
                     /locus_tag="SFZ78_000777"
     CDS             complement(10381..11187)
                     /locus_tag="SFZ78_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8211665.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(11184..11960)
                     /locus_tag="SFZ78_000778"
     CDS             complement(11184..11960)
                     /locus_tag="SFZ78_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211666.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLNPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKRVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIVYKNSKPYILALKEKK"
     gene            complement(11960..12946)
                     /locus_tag="SFZ78_000779"
     CDS             complement(11960..12946)
                     /locus_tag="SFZ78_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8211667.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(12921..>15014)
                     /locus_tag="SFZ78_000780"
     CDS             complement(12921..>15014)
                     /locus_tag="SFZ78_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8211668.1"
                     /translation="TNLNAQESNEAINLQKVVVSATGFEQDADSNLRNVISIEGKDLQ
                     NKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIAVKVMIDGRAINVLDNSHG
                     VTPLNSINLDNVERIEIIPGGGSVLYGNGTRGGVINIITKKQKSDAFAINLKSSTYNH
                     GGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGYNEKGYFINTKTYIDINDNSDL
                     TLGYNYFKSKNTSSGYLTKTQAQSNPTQKGNSDNITQINRPEISLDYHYYFDDIWEFN
                     LEAFWQNQKINYLKDVSTMSYRGMSLPVYQNGSGFEDTLTGISLKNKLNYANNSYFIF
                     GYEFANHDAKRKSLVYYSAAPIINYHRMTTLMDMTKQSHSIFALNSHNFNEFFTLSGG
                     ARYEFSTYNTNRSYRNEMSMNGRPPSSNPMITDSTTLFDTDKNTNNFAFEITPNFKYS
                     DTGNLYLKYERGFVSPTPAQFVNRNNNTSNGIPPYYSSNLKAEIFDTFELGIDDFWWD
                     FYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQNFLDDDLI
                     FRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFIDLTYFSRAKDGG
                     TIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQDSINDQYL
                     VGNGRNYYVEFKYAF"
BASE COUNT         5104 a         2181 c         2413 g         5316 t
ORIGIN      
        1 taaatcacaa ttttacctct tttgttcttc ttgatgaagt tgattttaat ttttcggagt
       61 taaaaagcat tttagaagat aaatttaata taaaaatagc tgatgaaaat tttaccaaag
      121 agggcgtgat tttttcatat gaaaatatgt tagttactct aaatttgatt aaaaatccta
      181 tacctaatca cgaagcagaa tactatgcaa attttaattt tatgtggaaa gatgccttag
      241 agcaaactaa aaaacataaa gctcatcttc ttatagcggt gctaagtcaa gatcaaagca
      301 aattagaaca agctaaaatg tttacgaaaa ttgcagcttt atgtttggaa aataaacatg
      361 ctttaggttt ttatacaggt gcagttgttt tagagcccag tttttatata gaaaatgcaa
      421 aaatgttaga tgataatcgc ttgccggtat ataattggat atatgttagt gtttatccta
      481 gtgaaaatgg agttaatgct tatacttatg ggcttagaaa ttttgataaa ttagaacttg
      541 aagtttgtga tttaaacata gaagaaaaag aacttttctt ttgtatttat gatattgttt
      601 tgcatatttt aacttatgat attaatctaa aagataaaga tattttaaaa tttgaagatg
      661 gaaaagaaat aaaatttata aaaagtcaag gtataagtgt tgagaatgaa agcttgaaaa
      721 ttatttttta agtttcacat tcacttcaca gttttgagtt aaactttcgc caaccaagac
      781 aaaaaaagga gaaattatga aagcaaaact aactttactt gctttgttgg gtactacggt
      841 gcttttagct aaagatatgg ttgttcctgc tagcgaactt ccaaataatg ccaaagaatt
      901 tatttctaaa aattttaaaa ccgctcaaat tggtttggtg aaaaaagata tagattctta
      961 tgatgtgatt ttaaatgatg gaactgaaat tgattttatg atcaatggag agtggaaaga
     1021 agttgatgga aaatataagg ctttgccaca tactatctta cctaatgtta tgaaaaaagt
     1081 gagtgcaact caaccaaatg ctcaaattct tgaagtagat aaagaaatta atggttataa
     1141 atttaagttt aataacaata tggaagttta tacagatatg caaggaaata tcctaggtca
     1201 aaaattagat taatttttga aaatttaact cccttagaaa atttgatgca aaaatttgga
     1261 agcatagtct tccaaatttt tattttttga ttgcaaaacc caaaatatat ttagttttaa
     1321 aataatactt tattgataca attgattgtt tttttataaa attaaattta caaaatgtta
     1381 cataagattt aaaatatttt ttttaaaaaa taattattta taaatatttt gctaaaataa
     1441 aagagatgta atcttaaatt taaggaagaa taatgaatac tcctaaatgg actagtcacg
     1501 atacaaggtg ggttttatct ctttttggaa cagctattgg agccggcgta cttttgttgc
     1561 ctattagtgc tgggcttggt ggattgatac ctttgttagt tatacttgtt ttagcttttc
     1621 ctatgactta cttagctcat agaaatttat gtcgctttgt gctttcaagt tctaatccaa
     1681 aagatgatat tacttttgtt gcagaaagtt attttggcaa gggcggtgga tttttaatta
     1741 cacttttgta tttttttgct attttgccta ttttattggt ttatagtgct aatcttacaa
     1801 caactttgct tgagttctta atcaatcagt tcaatttcaa tgcagatctt actcatgctg
     1861 ctcgttggtg ggtgagtttt ttgattgttg gagttttggt tttgatttct attcttggtg
     1921 aaaatgttgt aacaaaagca atgagttttc ttgtttttcc ttttattata tttttattta
     1981 ttttttcatt gcttttaatt ccacaatgga atttatcgtt atttgcaaat gttgattttt
     2041 ccgtaatttc aacaagtaat ttttgggtta ctttatggct tgttattcct gtgatggtat
     2101 ttagttttaa tcactctcct atcatttctt cacttgcttg ttattgtaaa aaagaatatg
     2161 gtggttatgc tgaacctcgc gctagaaaaa ttatttcttt ggcaattatt cttatggttt
     2221 ttgttgtaat gttttttgtt ttttcttgtg ctttaacctt tacaccagaa gattttgcat
     2281 cagcaaaaga tcaaaatatc aatattctta cttttatagc aaataaattt cctgaagttt
     2341 ctttactagc ttatgttgga cctattgttg cacttgtggc tattagcaaa agtttcttag
     2401 ggcattatct tggttctcaa gaaggcttaa atggtatttt atataaagca agtaatggta
     2461 gaattcaagg taaattcgct caaactttaa cagcgatcat tacctttgct atcgcgtggc
     2521 ttgttgcgta taaaaatcca agtgttatag gaattatcga ggctattggt ggtcctgttt
     2581 tggctatttt gcttttctta atgccgcttt attgtattta tcgttttgat attttggcaa
     2641 gatttcgtaa taaattttta gatctttttg ttttggtaat ggggatagtt gcaatttctg
     2701 ctgcaattca tgatctttta taaattaagg ataaaaaatg agtaatttaa gcatttttaa
     2761 aataggtgtt ggcccttctt cttctcatac tttagggcct atgcttgctg gaaatttatt
     2821 ttgtaaaaaa gttgctaaaa agcttgatga aattgataga gttgaggtta ctctttatgg
     2881 ttctttgtcg ttaacaggca aaggacactt gagtgataag gctgtaattt gggggttaaa
     2941 tggcttagaa gctaaaaatt taagtgcggc aatacaagat gaagtaaata aaaatgctat
     3001 tgaaaatgct caaattgatt tttgtggcga gaaaaaactt agttttaatt atgaaaaaga
     3061 tttgatattt tctaaagatt ttttaccttt acatgagaat ggtatgaaaa ttaaagctta
     3121 tgattgtaaa ggtgggttag ttgatgagga aacttattat tctgtaggtg gaggctttgt
     3181 tttaacagct gcggaattag aaaaaaaagg taaaaattct aaccaaaata aaaagaaaaa
     3241 actagatata gagcttaata acgctaaaga agctttagag ctttgcgata aaagagattg
     3301 ggatttagca gagctttcct atcgttatga attgcaattt cacactaaag aggaaattcg
     3361 tgcttattgt cttgaaattt gggaagtgat gcaagaagtg tattataatg gtacgcatcc
     3421 aaatgaagat tatttgcccg gaaaacttca tttaaaacgt agagctaaag ggcttaaaga
     3481 aagagtggcg atgacagctg atcctatggg cattatagat tttatttctt tatatgctat
     3541 tgcgattgct gaagaaaatg ctagcggagc aaaagttgta accgcgccaa caaatggagc
     3601 atgtgccgtt atccctgctg ttatgcttta tcttaaaaac catactatag gttttagtga
     3661 tgaaaaagct atagagtttt tattaacagc aatgcttata ggttcttttt ataagaaaaa
     3721 tgcaagtatt agcggagcag aagcaggctg tcaagcagaa attggtagtg ctagttctat
     3781 ggcagctgcg gctatggcaa cagttttagg ggttaatgct tttaaagcat gtaatgctgc
     3841 tgaaatggca atggaacatc atctaggttt aacttgcgat ccagttgcag gacttgtgca
     3901 aattccttgc atagaaagaa atgcctttgg agctattaag gctataagtg ctgctagaat
     3961 ggcaatgaca cgcaaatcca ctcctatggt aagccttgat gaggttatag aaaccatgta
     4021 tgaaacagga aaagatatga attataaata caaagaaact tctttaggtg gtcttgctac
     4081 aaatttaaaa acagtatgct aaagtgtttt tacactttgg tgtatttttt cattcttaga
     4141 cttaaaaatt ctttcatttc ttctttggaa aaacttttaa gaatgcgaat ttgcttaaaa
     4201 agcaagccaa gattgattgc tcccatcact aaaagcaata agcaaatcat taaaaaaaca
     4261 agatctatgg ctccaaattc attaatcata gccaaacttg caaaaaatac gctcgctaat
     4321 aacaaaaaaa ataaaagcaa tatttgtttt aattttgcct cattaaaatt atcgcaattt
     4381 tgagtgaaat ttctaaaaag tatgatcttt ttacccaaat ttgaaactaa aatttcatca
     4441 ttttctttaa ataagccttc ttttaaactt tgataaaaaa agatttcatt atttaaattt
     4501 aaagcatctt tgtagcttga taaggtgtag tctttgtaaa aaaaggattt taattcattt
     4561 ttcttttcta ttttaaataa tcttaaatca tttctcgcat aaaaaaatcc actaaagttc
     4621 ataaatgcca taagtatcac tccctaaaaa attcctataa agtggcttga aatttaaagg
     4681 tattgtaaca tttttttcat catttaaact tgaactttgg aaaatcaaaa acatatctat
     4741 ttcatcttta aaggttttga gaaaattttc tccaccctca tacattaaaa atttagcttc
     4801 acttggaatt tgggtataaa tttggcggtt tggaacctta aataaaggga tatttttatc
     4861 aaaattatct atattttgac ggcttaagat acaaagatta ggcgcttttg ctttgcaaag
     4921 cctagcatct agtatagggt gatcttttct tatggtttct ccaccgacta caagcaaatc
     4981 aatcaccgct ctaattttat gtgcataagt gcgacttagc tcattgctta cgattttgcc
     5041 aaaaggcgag ccattcatag aaagggctaa tttaaaaagt ttaaattgcc ctttttgcca
     5101 ttttaaaaaa ggttttaaaa gtttttttcc ttcttcttta agtatgtcaa attcaacctc
     5161 tatgccttgt ttttttaaaa attcagcccc accacttgcg attttatttc catctttaac
     5221 gctgatgaaa atttttttaa aacctagctc gctaaagagt tttgcacaag gaggcgtttt
     5281 tccttgatga gagcaaggct caagtgtgac aaaagctatg ctatctttaa atacaccttg
     5341 atggtttttg caaataaact catgcaaggc gtttgcttct ttaggcaatg aaatttcagg
     5401 tcttaagctt ttaaaagcat gagctatggc attaagttcc gcatgagcta atccagcttt
     5461 ttcatgagct tttatggcta aaattttttc atttttatct aagattacac agcctacagc
     5521 cggatttgga taggttaaaa actgatattt ccaagcctca tttaaagcta aattcatata
     5581 aaattctttc atttgcctac cttgtatttt aaaatttgac atatttttaa aattttatat
     5641 ttttgtttta agataacaaa ttctaaattt tccatttgta tttcttattt ttaattatat
     5701 tagccatagt ttttctaagt ttttttagga tataacaaaa atagtaagat tgaagtatta
     5761 tttttcattt gtagtatcct ttataatttc aggaatgata taagcttgat aaactagaaa
     5821 gtcttggtgg ccgggagaaa gggattcgaa cccctggagg tgtgaccctc aacggttttc
     5881 aagaccgccg ctttcgacca ctcagccatc tcccgataaa gtaaagtttt gccttttgga
     5941 ggcgacatcc ggattcgaac cggagatcaa ggctttgcag gcccatgcct taccgcttgg
     6001 ctatgtcgcc ctgataatgt tgaaaaagtg gtgcccgagg ccggacttga accggcacgg
     6061 aagaaaaatt ccgagggatt ttaagtccct tgtgtctacc aattccacca cccgggcggg
     6121 tgattatgga gcgggaaacg agattcgaac tcgcgacccc aaccttggca aggttgtgct
     6181 ctacccctga gctattcccg cataaatttc tgaaagaatt gaagataaaa gtatagcaaa
     6241 ataaacttaa aaggagttta ttttgcctta agttatttgc aaataaataa agctttcgcg
     6301 tttaaaattt gttctttttc gctgataatt ggagatgaaa gttctatatt gtcagatttt
     6361 gcatttagca ttctaggtgc gatattggta ttggcattta cttgtaaatt tttcaataca
     6421 caagttttat taagatctaa agagtaagtt ttttcatatt cgtatgatgt ttttaaaagc
     6481 tctttgtaga gattttcttt gttgttgttt agtgtatctt ttgaaaattt tgtttgtatg
     6541 gctggtgttg aaacgctgat aaaattattt ttagctatga tagaattgat gtcatttaaa
     6601 agattgttaa aatctgcaag ttggttttct ttaaattcac attctaaatt cgcatcaaat
     6661 ctttgacctt ttggagtttg tataccatct ttataggaaa aattaggttc taaagaaaaa
     6721 cttcctccgc tacaaaaatt ttcttttttt gagcgttcta aaatttgatt gaaagtattt
     6781 gtgatttcag ctttttcact attgtctaat gtaatttttg aacttaaatt ttcatttgcc
     6841 caaaaattaa tatttgcata taaaatatcg ggttttagtg tattgcttac ttctatattt
     6901 cttgaaaaat ataaatcatg attagagtct tttttgccta aaaattctac attaaaaact
     6961 actcctgcaa caaaaagtaa taaacataaa aaacctacac ttaaaccttt aaaaaaagct
     7021 aacatggata tccttaataa tttaatttga gctaatttta gcaaaaaatt ttaaaatttt
     7081 ttgttatact ctcatttatg caaaaaaaag agcttgaaaa actacaagaa aatttacttc
     7141 tttggtatga aaaaaatgga cgcaaaactt tgccttggcg taatttacaa agtcaaaatt
     7201 gtgatgaaag tttaaagcat attgatagag cttatggagt ttatatcagc gaaattatgc
     7261 ttcagcaaac tcaagttaaa tcagttttag aaaggtttta tttccccttt ttgcaaaaat
     7321 ttcctacttt agaaagtttg gctaatgcta atgaagacga gcttttaaag gcttggcaag
     7381 gacttggtta ttacactcgt gctagaaatt taaaaaaggc agctttagaa tgcgtggata
     7441 agtttggggc taaattacct aaagaagttg aggatctaaa aaaattaagt ggtataggag
     7501 cttatacagc aggcgctata gcttgttttg gctacgatca aaaggtttct tttgttgatg
     7561 gcaatatacg ccgtgtgctt tctcgtcttt ttgctttgga aaatcctagc atgaaagaac
     7621 ttgaaaaaag agctaaagag cttttaaatt taaatcatgc ctttgatcac aaccaagctt
     7681 tgcttgatat aggggctttg gtttgtgtgg gtaaaaatgc aaagtgtggg atttgtcctt
     7741 tgtatgattt ttgtcaaggc aaatttaata cagagtttta tccaagagct aaaaaaatac
     7801 tttatgagag tttaaattta aatctttttt tgtttgaatt taataaaaaa tttgcgatac
     7861 agaaaagcca agataagctt tataagggta tgtataattt tccttttttt aaagaaggag
     7921 aatataaact ttctaaagat atgagttttg taggggagtt taagcacggc tatactaagt
     7981 ataaacttaa tatcaaggtt tatcatcaaa ttttaaacaa tgaaaataaa aattatgaat
     8041 ttcaaacctt aaaagagtta gaaagtaccg cactttcggc actttcttta aaagcgttaa
     8101 aattaattaa gctctgattt tttaggcaaa cataaagtag ctataagcat gatgattgta
     8161 aaaatagcta tatagataaa aaagccattt tctatacctg catttttaaa ttgtaaagca
     8221 acccaaggag cagatcctcc aaaaacagca tttgaaatag cataacccaa acctgtccct
     8281 aaagctctta catgttcagg aaaaagtttt gctttaaaaa tcccagcaac tgaagtataa
     8341 aaacttaaaa taacaaacaa taataccacc aacataaatg tcaaagaagg attattttgt
     8401 gcgttattgg ctataagtga aaaaatagga taaattccta ccaatgccaa aatacaaaat
     8461 acaattaaag atcgtttgtg acctatttta tctcctatat atccaaaaag aggttgaatg
     8521 atcattagta taaataaagc acctaagaaa agattattaa caagcatttt atccataccc
     8581 gtattttcca taaaagtttt agtataagtt gtaatggtgt aaaaagctaa agaacctcca
     8641 gaggtaaccc caagtaccat taaaaaaggt ttccaagatt tgcataatgc ttttaaagta
     8701 ccacgatctt catgctggtg aagttttgta gcactttcat tcatcatttt tcttacaaaa
     8761 agcgagccta gtgctaaaat tctgcctatt acaaaaagta ttctccaagc ataatctttc
     8821 atatcatcaa tgctaaaaaa taaaaacatt atactaatgc ttgcaacggc caaaagttga
     8881 ccacctatta gggttacata ctgaaaagat gagtaaaaac cgcattttcc ttccgtagca
     8941 agttctgaaa gataagtagc tgctatgcca tactccccgc ctacactaag accttgaata
     9001 agtcttgcta ttaaaagcaa gataatagca agatcgccca ctgtatcttt gcttggtaag
     9061 gctgctatca taaaagagcc taaagccatt aaaaccactg atataaccat agatttttac
     9121 gacctacttt atcagctaaa gagccaaaaa gccaagagcc tataggacgc ataaaaaatc
     9181 ctgctgcaaa aaccccaaag gcattgattt gctggataac aggattatct gaagttgaaa
     9241 aagtatgagc aaaataagtt gctgtaaaag catagatata aaaatcaaac cactctacta
     9301 aatttccgct acttgcagca ataatagagc gaattttttt cgtgcgagta agctcttgca
     9361 taaacccttc cttaatttta gatttttatt taagtatagt gtgatttttg tttaatatat
     9421 ttaaaaataa agaagagaaa taaaaaagat aaaaatatcg ataaaaatgt tacatatttt
     9481 aataaatttc ataaattttg gtaaaatgtt tactctagga aatataatga aatttaaaaa
     9541 aatatatata gaattaagcg atatttgtgg tttaaaatgt gatttttgtc cttctcaaaa
     9601 aggaattcgc ggggtaatga gtgaagaaaa atttcaaaac ttagcttatg aaatttctaa
     9661 taaagctgag ctttttacct ttcatctttt gggcgatcct ttgcttttac ctaatttgga
     9721 aaattatcta aaaatcgcaa aagatgaagc tatgaaactt gaaatcacta caagtggctt
     9781 ttatctaaat tctaaaaatc aagctttatt gttagggtat gagaatatcc atcaaatcaa
     9841 tatttcttta atgtcttttt taagtcaaag caatatttct ttagaacagt attttaagcc
     9901 tattttagaa ctttgcaaaa agcatttaga gcaaaaaagc ctttctttta tcaatctaag
     9961 actttggaat ttagatgcta attttaaagc acctaagtca aatttaaaaa tttatgagtt
    10021 tttagccaaa gaatttgaag ctaagatcga tgcaaactta agtaaaaatc gcttgcaaag
    10081 acatattttg ctttatcaaa ataaactttt taaatggcca aatttaaaag atgaacccct
    10141 ttataaaaaa ggaaaatgtc atgctttaaa agagcaaatt gggattttaa gtgatggaag
    10201 tttggtgcct tgctgtttgg atactaaagc agatattaac ttgggaaatg tttttgaaaa
    10261 taactttgat aagcttttta aatcaccgcg tataaagatg atgaaaaaag cttttgaaga
    10321 agataaacgc atagaaaaac tttgtcaaac ttgcgaattt tttaaagcaa gattgggtga
    10381 ttaaaaattg ttattttcta gctttgtttt aaattcttga attctatcta ttatcttagg
    10441 actaagacgt aataatatag gtgtatcttt gttaaaataa atacttcctg ttttaactgc
    10501 tttggtattt ttcaataaag catttgtatc taaaagattg tttttagcat taattccaag
    10561 aatgagtatg tctggatttt gtttcagtat gtattctgct gatataacag gtcttgaaat
    10621 ttgactttgc gggcttaaat ttttaatccc tataagtctt aaaatatcag ctattaaaga
    10681 attatcatta aaggccatta aagggttgct agaataaaga taaatcgcac ttttatttag
    10741 gggtttatcg cttaattttt taaatttttg gttaaattct tgttttaaaa gctctgcttc
    10801 tttttctttt ttggtgattt ggcctaaggt tgtgatattt tttgttatat cttctaaacg
    10861 ctcggctttt aaattgatac ttttgatacc aaaattttta agtccttctt ctaaatttaa
    10921 agaataagag cttaaaatca ccaaacttgg ttttaatgct actatttttt caagcgaagg
    10981 atttgaaaaa gtgcctacgc ttgtaagttt tgaggtttga tctttaggat aaatatttga
    11041 gtgttgtaaa gtagcaatgc ctacgatttg atcttcagcc ttaagcataa aaagggtttc
    11101 tatgcttgca ggatcaagca ctacaaggcg ttcttttgca tttagtgtga ttaaaaacaa
    11161 actcataata attaaaattt ttttcatttt ttctccttta aagctaaaat ataaggttta
    11221 gaatttttat aaacaatctc gcagtttaaa tcataaattt cttttaaaat ttcttgagta
    11281 aaaagttctt tgcttgttcc aaaatacttt atctcccctt cttttaaaaa aaggatttta
    11341 tcgcaaaaca tagaagctaa atttaaatca tgcaagatag caacaacggc aatatttttt
    11401 tctttaactc gtttttcaca aaggcttaaa agttctatag catagtttaa atcaagggct
    11461 gaagtgggtt cgtctaaaaa aagaattttt ggctttttaa gcaaagctct tgctaaaagc
    11521 attctttgaa attcaccccc gcttaaagaa agtatgcttc tttctagaaa attttcaagt
    11581 cttaaatctt tagcaaattt tttaatttct aaaatatctt ctttagaata agaactaaaa
    11641 gcgtgtttta aattcgcata tttactcatt aaaagcacat ctatgacttt taaaggggtg
    11701 tttaattctg atttttgagg cacaaagccg caaattttgg caaattcctt aagagaaaaa
    11761 tccttgatat ttgtgttaaa aagacttatt tctcctttat ttgggtttaa atttttaagt
    11821 ataagtttta aaagagtgct tttacctgag ccatttggcc ctaaaattcc tataaaagcc
    11881 tgatttttaa gttctaaatg aatgtttttt agtaaatctt tttggtgata agcaaagctt
    11941 aaatcatgta tttttagcat tataaaaatc tcctagcact taaagccaag tataaaaaaa
    12001 taggagctcc aaaaaatgca gttaaaattc caatcggaat ttgcacagga gctaaaagag
    12061 ttcttgctaa agtatcacaa ataagtaaaa ataatcctcc aaatgctgta cataaaggga
    12121 taactaaggc attattataa tttttaagca aaagtcttat agtatgagga atgatgagtc
    12181 caacaaagcc tataagtccg ctaaaagcaa ccgcaaaaga tacagccaag gatgagacaa
    12241 tgagtaaatt tatctttaat ttttgagcat ttacccctag atttctagct tcatcatctc
    12301 cgcttaaaag tatgtttaat tcgtttttat gagcgtaaaa ataaaacaaa caaaaaatta
    12361 aaggcaagat taaaattcct acacgaaacc aagaagcatt gcctatattt cccataagcc
    12421 aagcgactat tttaaaagaa tcctcgccta taagataagt gaaaaaagaa gtgaaagccc
    12481 ctaaaaaaga tgaagctgct atgccgataa tgagtaaagt tgctatagaa gctttagaag
    12541 aaattttaaa aactcctagg gcaaaaaagg cagagcaaac aaaacctaaa attccataat
    12601 aataatcatt caattttaac aaatacgcca aaaccgctcc aaaggttgcc gcagaagcta
    12661 tacctatgat ataaggatca gctataggat ttgaaaatac attttgagtg atagccccac
    12721 tactagctaa aagcataccg attaaaatcg ccattataat ccgtggtaag cgtccatcta
    12781 tgattatttg tcttaaaatt tcatcttggc taaagatata tgaaaaaagc tcttttgggt
    12841 ttaaattctc atctcctaag caaagtgctg taaaagaagc gattatataa gctaccaaaa
    12901 gccctataat cactaaaatt ttagaatgcg tatttaaatt caacatagta gtttctgcca
    12961 tttccaacta ggtattgatc atttatactg tcttgatagg tgtagtatct tttatcgaaa
    13021 agattgcgaa ttcctgctaa aatttgtaat tttttataat tatatttcat gccaatatct
    13081 gttaaaaaat aatcccttat ccaagaattt ttagacattt ttcctgtatt ttcatctata
    13141 gtgccaccat cttttgctct agaaaaatag gttaaatcaa taaaatttga gaaattttta
    13201 ttccaagcgt attcaagccc agctgtggct ttgatttttg aaacataagg aattctcatg
    13261 ccgtcattaa cacctttaga aattttagca tcaagataag ttagactttc tctaaagatt
    13321 aaatcatcat ctaaaaaatt ttgactcagg cttaattcta ctcctaaacg gcgagtttga
    13381 tctatattat aatatttcca ccaagatcca ctagtagaat gagggtttcc aagataagaa
    13441 atttcatctt tgcttagagt gtaaaataaa gttagattaa agccgtaaaa atcccaccaa
    13501 aaatcatcaa ttcctagttc aaaggtatca aagatctcgg cttttaggtt cgatgaataa
    13561 tagggtggta ttccattact agtgttgtta ttgcgattga caaactgagc aggtgtagga
    13621 gaaacaaaac ctctttcgta tttaagataa agattgcctg tgtcagagta tttaaagtta
    13681 ggggtgattt caaaagcaaa attattggtg tttttatcgg tatcaaaaag ggttgttgag
    13741 tctgtgatca taggatttga tgatggcggt cttccgttca tactcatttc atttctataa
    13801 gatctattgg tattataagt gctaaattca tatctagctc caccggataa agtgaaaaat
    13861 tcattaaaat tatgagaatt aagagcgaaa atagaatggc tttgtttagt catatccatt
    13921 aaagttgtca tcctatgata gtttataata ggtgcagcgc tataatacac caaactcttt
    13981 ctttttgcat catggtttgc aaattcataa ccaaaaataa aataagaatt atttgcataa
    14041 tttagtttgt tttttaaact tatccctgta agcgtgtctt caaaaccact tccattttga
    14101 tatacaggaa gactcatacc tctataactc attgtagaaa catcttttag ataattgatc
    14161 ttttgatttt gccaaaaagc ttctaggtta aattcccata tatcatcaaa atagtaatga
    14221 taatccaaag aaatttcagg gcgattgatt tgtgtgatat tgtcactatt acctttttga
    14281 gttggattgc tttgagcttg tgtttttgtt agatagccac tgctggtatt tttgctttta
    14341 aaataattat aacccaaagt taagtcgcta ttatcattga tatcaatata ggtttttgtg
    14401 ttaataaaat aacctttttc attataacct ttttgatatc catcaaggtt aaaactttgt
    14461 atatcaaagc taaaagctaa attttcattt atttgtttgg cgccattgat acctaaattt
    14521 ccacctagtc caccatgatt ataggtactg ctttttaaat ttatagcaaa agcatctgat
    14581 ttttgttttt ttgtaatgat attaatcaca ccccctctag taccatttcc ataaagcaca
    14641 gacccacccc caggtatgat ttctatgcgt tctacattat ctaaattgat actatttagc
    14701 ggggttacac catgggaatt atcaagaaca ttaatagcac gcccatcgat cataactttt
    14761 acagctatat tggacttatt tccttgtcca cgcatgtcta tattgcgtcc aagtccaaaa
    14821 tttacaaaac taatgcccga aattctttct aaggcttgtt ctaaggaaac ataaccttta
    14881 ttttgcagat ctttgccttc aatgctgatt acattgcgta aatttgagtc tgcatcttgt
    14941 tcaaaacctg ttgcactaac aacaactttt tgtagattga tagcttcatt tgattcttgt
    15001 gcatttaaat tagt
//
LOCUS       DARGEM010000034        14699 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.034, whole genome shotgun sequence.
ACCESSION   DARGEM010000034 DARGEM010000000
VERSION     DARGEM010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.034"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..313)
                     /locus_tag="SFZ78_000781"
     CDS             complement(<1..313)
                     /locus_tag="SFZ78_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211669.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQ"
     gene            complement(300..1175)
                     /gene="era"
                     /locus_tag="SFZ78_000782"
     CDS             complement(300..1175)
                     /gene="era"
                     /locus_tag="SFZ78_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG8211670.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQASHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            complement(1172..2491)
                     /gene="hslU"
                     /locus_tag="SFZ78_000783"
     CDS             complement(1172..2491)
                     /gene="hslU"
                     /locus_tag="SFZ78_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG8211671.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            complement(2488..3030)
                     /gene="hslV"
                     /locus_tag="SFZ78_000784"
     CDS             complement(2488..3030)
                     /gene="hslV"
                     /locus_tag="SFZ78_000784"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG8211672.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            complement(3030..3473)
                     /locus_tag="SFZ78_000785"
     CDS             complement(3030..3473)
                     /locus_tag="SFZ78_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG8211673.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            complement(3486..4706)
                     /locus_tag="SFZ78_000786"
     CDS             complement(3486..4706)
                     /locus_tag="SFZ78_000786"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG8211674.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVIVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4862..5107
                     /locus_tag="SFZ78_000787"
     CDS             4862..5107
                     /locus_tag="SFZ78_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG8211675.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            5104..5511
                     /gene="tsaE"
                     /locus_tag="SFZ78_000788"
     CDS             5104..5511
                     /gene="tsaE"
                     /locus_tag="SFZ78_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG8211676.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            5504..6232
                     /gene="lptB"
                     /locus_tag="SFZ78_000789"
     CDS             5504..6232
                     /gene="lptB"
                     /locus_tag="SFZ78_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG8211677.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            6232..7482
                     /locus_tag="SFZ78_000790"
     CDS             6232..7482
                     /locus_tag="SFZ78_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG8211678.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPTGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            7646..9070
                     /locus_tag="SFZ78_000791"
     CDS             7646..9070
                     /locus_tag="SFZ78_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8211679.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FAPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            9212..9399
                     /gene="kdpF"
                     /locus_tag="SFZ78_000792"
                     /pseudo
     CDS             9212..9399
                     /gene="kdpF"
                     /locus_tag="SFZ78_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            9409..11104
                     /gene="kdpA"
                     /locus_tag="SFZ78_000793"
                     /pseudo
     CDS             9409..11104
                     /gene="kdpA"
                     /locus_tag="SFZ78_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            11114..12989
                     /gene="kdpB"
                     /locus_tag="SFZ78_000794"
                     /pseudo
     CDS             11114..12989
                     /gene="kdpB"
                     /locus_tag="SFZ78_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            12991..13599
                     /gene="kdpC"
                     /locus_tag="SFZ78_000795"
     CDS             12991..13599
                     /gene="kdpC"
                     /locus_tag="SFZ78_000795"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEG8211680.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVGKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            13602..14699
                     /locus_tag="SFZ78_000796"
                     /pseudo
     CDS             13602..14699
                     /locus_tag="SFZ78_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
BASE COUNT         4645 a         2115 c         2603 g         5336 t
ORIGIN      
        1 tttgatcata taaatttaaa acacaataat cactttcctc aataaatctt tcatcaaaca
       61 aagcttgaaa aattaaaggc tcaggaaagc aaaaacgact ttttttcaat ttgtaaacag
      121 gcgctaaaaa acaatgataa atttcattat gtttaaaaaa agctatttga tagtcaaagg
      181 gtttgcttag cttaaaatct gcggttaaat tgttaaaaag ttcgtcttct ttggatattc
      241 ctgttctttg agcataaagc aaatctgtag attttataaa atttatttta tttaatgaat
      301 taattttcat catttaaaag tttttttaaa aattcttcat ctttttgcca gttttttttc
      361 actgttacga aaagctttaa aagtactttt ttttgtgcaa gttttgaaat tttaaagcgt
      421 gcatctttgc ctattctttt taaagttgcc ccttcttttc ctataagcat acccttgtga
      481 gagtttgtat ctgtgatgat attggcttct aggattaaaa gattaggtgt gtctttggtg
      541 cgattgataa gcacttcact actataagga agctcatcgc ttaaattttc ataaatactt
      601 tcaagtatga aatctctata aagttctttt tcgctactcg cacttaaaaa ttcaggatca
      661 taaaaatact catgttcatc aaggtatttt actatctcat ctaacaagcc ttttttatag
      721 ctttttttct tagaagaata aggaatgata gccttaaaat gttggctaaa ttttgcatat
      781 tcgctaagtt tttttaaaag cgtagcattg tcggttaaat ctactttatt taaagcgatg
      841 atatgtgatg cttgtgggtt tagactaagg aaattttcat agtcttttgt actatcaaaa
      901 acacttgcca caaataaaat cacatcacaa tctcccatgg atttaatagc actttggaca
      961 agcagttgat taagcgtagc accgctttcg tgaagtcctg gggtatcgat gaaaatgatt
     1021 tgattttttt catgcatcac tatggctttg attttacgcc ttgtggcgtt ttgtttgtga
     1081 gaaactaggg cgattttttc ttctaataag gaattgatta aagtactttt tcctgcatta
     1141 gtacgcccta tgatactaac aaagccactt ttcacaaaat ataccttgca agatctttat
     1201 tttctatgat atctccgagt ttttcttcta ccattttttt atccactacg aattttttac
     1261 ccgcatactc atcagcttca aagcttagat cttcaagtaa tttttctatt acagtatgta
     1321 agcgtctagc acctatatct tgcatttctt cattggctct tgaagctatt tttgctattt
     1381 ctttaatagc ttcatcatta aattcaagtt ctaaattttc agtttttaaa agctgagagt
     1441 attgttttaa aagtgaattt ttagggcgtg ttaaaatttc ataaagagct ttatcatcaa
     1501 gactatctaa ttccactctt aaaggaaagc gtccctgaag ttcagggata agatcacttg
     1561 gtttgctaag atgaaaagcc cctgcagcga taaaaagaat atgatcggtt tttaaagtac
     1621 ctatttttgt ttgtacattt gatccctcga ctataggaag taagtctctt tgcacccctt
     1681 ctttacttgg atcttggcgg tttgaatttc cgcttgaaac agcgatttta tcgatttcat
     1741 caataaaaat aataccttca ttttccgctc tttttaaggc ttcgcttttg atgctttctt
     1801 ggtctaggat tttttctcct gcttcatttt ttaaagcatt tttagcgtct ttgattttca
     1861 tttctttttt gactttttta ctgccaacgc ctataacctt aactatatct tgcattgcac
     1921 ccatttcagg aggtaggtta ggattggtat cgaacatatt ttgtgaaatt tctatctcta
     1981 tggtgctttc atcaagatcg ccatttctta gtttagttct cattttttca agactgtttt
     2041 tatattcttc ttgtttttca tcgctgatac cctttggtaa aggtggcaaa agtttttcta
     2101 aaattttatt ttctataaat tcatcgattt tatctttgtt tttttctctt tgctcatttt
     2161 ttaccaaatt taaagctgca ttggcaagat ctcttaccat gctttctaca tcacgaccta
     2221 caaaacctac ttcagtatat ttactcgcct cgattttgat gaaaggaaag cccatcattt
     2281 tagctaaacg cctagcgatt tctgtttttc ctacacctgt agaacctatc atcaagatat
     2341 tttttggcac tatatcatct tgcaactcag ggctaagttg cattctgcgg tagcgatttc
     2401 ttaaagctat agctatgatt tttttagctt ttttttgtcc tataacataa tcatctaaaa
     2461 atttaacgat ttcttttgga gttagattca tttctcatcc tcgattacat aagttttgat
     2521 attggtattg gtataaatgc aaatttcacc tgcgatttga aggcttgatt ttacaagttc
     2581 ttcttcatct aaatcggtat gttttgctaa ggctctagca gctgaaagtg catagtttcc
     2641 accacttcct atagctgcga tttgcccatc ttcaggttcg accacatcgc ctgtaccaga
     2701 aagtagaaaa atgtgatttc tatcaagtac gagcatcatg gcttcaagtt ttcttaggta
     2761 tttgtctttt ctccattctt tagaaaagtc aatcgctgct tttaaaagat cgcctttaga
     2821 actttgaagg agattttcaa acatatcaaa aagattaaaa gcatcagctg ttgatcctgc
     2881 aaaacctgct aaaactttgc cattgttgag ttttctaatc tttacagcat tgccttttag
     2941 caccgtattt ccaaagctta cttgtccatc tccgccaatt acggatttat ttttaccttt
     3001 gtaagctaaa atcgttgttg cgtgaaacat tattctgcct ttatatttat gttaaattta
     3061 gcatggattg cgtgtccaag ttttacgctt acttcgtgga ttcctaagct ttttaaggta
     3121 tcacattcta aacttttttt atcgatttct atatggcttt gttcttttag ggcgtgagcg
     3181 atttcatctt tggttacgcc accaaacaaa cttccatttg cacctacggg ttttgaaatt
     3241 tcaagagtga ttttgctaag ttcttctttg agtttttcta aatttgcgat ttcaaagcgt
     3301 aaattttcag cctctttttt cttgtcgctt tcatattttc ttaaaacttc attagtagct
     3361 gctttagcaa agcctttagc gattaagaaa ttttgtccgt agccgtcttt tacttctttt
     3421 atttctcctg cttttccaag tgcttttaca tctttgatta ataatacttt cattttattc
     3481 ctttattaaa attttcttcc attttttcct gcgatgataa aacgcaaagc attaagcttg
     3541 ataaagcctg ctgcgtcttt ttgattatac acttcatctt cttcaaaagt acaataagct
     3601 gcgttaaaca agctatcgtt cgaactttcg cgtcctataa ctatcacatt gcctttataa
     3661 agctcgagtt ttactctgcc attggcgtga atttgagact catcgattaa ggcttgaagc
     3721 atcattcttt caggcgagaa ccaatagcca ttataaatta aactcgcgta ttttggcatg
     3781 agttcatctt ttaagtgtgc tgcttctcta tcaagcgtga tgctttcaag cgctctgtgt
     3841 gcttttaaaa gtatggtacc acctggtgtt tcgtaacaac cacggctttt catacctaca
     3901 tagcgatttt ctactatatc aaggcgtcct ataccgtgtt tgcagcctag ttcgttaagt
     3961 ttggttaaaa gtcctgcagg acttagtttt tctccattta tcgctactaa atctcctttt
     4021 tggaaatcaa gttctataat ttcactttca tttggagcat cttttgggct tttactccat
     4081 ctccacatat cttcttcagg tgcgtgtgca ggatcttcta agacaagtcc ttcgtaagaa
     4141 atatgaagta aatttgcgtc catagaataa ggagattttc cttttttctt agaaatatca
     4201 ataccgtgtt tttgtgcata agcaaggagt ttttcacgac tgtttaaatc ccactcacgc
     4261 catggagcga tgatttttaa atcgggatta aaagcaagat aaccaagttc aaaacgcact
     4321 tgatcatttc ctttacctgt ggcaccatga cttactgcat cagcacctgt ttgcagggcg
     4381 atttgtgctt gagtttttgc tataagtggt cttgctatac ttgttcctaa aagatattct
     4441 ccttcataaa tcgcattggc tctaaacata ggaaatacat aatctttaac aaattcatct
     4501 cttaaatctt taatgaaaat attttcttct tttatgccta aagaaagggc tttttttctt
     4561 gcaggttcga gttcttcacc ttgaccaata tctgctgtaa aagttacaac ttcacaatta
     4621 tactcatctt gaagccattt taaaataatg ctcgtatcaa gccccccaga atacgctaaa
     4681 actacttttt ttacttcatt tttcataaga tatcctttgt taaaatagat ttgaaaattg
     4741 taaaattgta tccaaatttc attaaagaaa agtttttact tgctattttc ttaaaaaaat
     4801 aaagcaaagg cgtaagcaaa ttttgttcca aaaattgatt ttttttgcta aaattgcttt
     4861 tatgagagta gataaatttt taaatgtagt taatatcacg aaaagaagag ctatttctga
     4921 agatatgtgt aaaagtggtg tagtggggat taatggcgtt attgttaagg cgagtaaaga
     4981 ggttaaggta ggtgatatta tcactttaca ttttactgaa tacactcaaa aatataaagt
     5041 gctagctcta cctagtacga aaagcattcc taaaaacgca caaaatgaat atgtggtaaa
     5101 attatgaaag aatttatttt agcaaaaaat gagatcaaaa cgatgcttca aataatgcct
     5161 aaagaaggtg ttgttttgct tcaaggagat ttggctagcg gaaaaacaag cttagtgcaa
     5221 gcttgggtta aatttcttgg tcttgatgca agggtggatt ctccaacttt ttccattatg
     5281 caaagatatg aaaatcatga tatttgcatt tatcattatg atatttatca agaaggttta
     5341 gaaggacttt tagcgaatgg tttatttgaa aatttttttg aaaaaggttt gcatttggtt
     5401 gaatggggcg gtgaaaattt gaaaaaaact ttaatgaaat ttggaatttc tactatccag
     5461 attaaaatta gcattaaaga tgacaaaaga aagtatgaaa tttatgagta aattagaaat
     5521 tgtaaatttg gaaaaaatta ttaaaaaaac taagattata catggaattt ctttggaggt
     5581 taatagcgga gaagttgtag gacttttagg gccaaatggt gcaggaaaaa caacaacttt
     5641 ttatatgata tgtggactta tttctccaag tagtggaaaa gttcttttag atggtttaga
     5701 tgtgacaaaa gatcctttaa ataaaagagc tcgatcaggg ataggttatt tacctcaaga
     5761 aagtagtatt tttaaggatt taagtgtaga agataacctg cttttagcgg ctcagatttt
     5821 ttataaagat aaaaaaattt tacatgataa agttgagcaa atgcttgaac ttttaagtat
     5881 agaacctatt cgtttaagga aaggtttaag tttaagtgga ggcgaaagaa ggcgttgtga
     5941 gatcgctcga agtttgatgt gtgaacctaa gtttttgctt cttgatgagc cttttgcagg
     6001 tgttgatcct atagcagtag ctgaaattca aactttaatt aaagagctta aaagattagg
     6061 aattggggtt ttaattaccg atcataatgt gcgtgagact ttggctattt gtgatagagc
     6121 ttatgttata agatcaggtt ctttacttgc tagtgggaat gctgatgaaa ttgcaaccaa
     6181 taaagacgtg aaaaagtatt atttaggagc ggagtttaaa ctccttgatt gatgttaaag
     6241 caaaaaatca cccaagcgcc caagactaaa atttctcaaa ctttacgctc ttggttgcct
     6301 attttacaag caaatataga ggatttaaaa gaaaatttag ataaatttgc tgaggataat
     6361 cctttcttaa atgttcaaga ttcgatacaa actcatgata agggtaagaa ttattttgat
     6421 tcattttata aacataatgt aaattcggct tttgtggata gtaaaggact tgccaaaaaa
     6481 agtgtttatg agcttttaaa tgaacagatt cttcctcctt tgtttcctac aagcaaatct
     6541 caagaacttg caaaaaaaat tatagaatgc ttaaatgagg aaggatattt tgaacacgat
     6601 gaagaatttt taaaagagta ttctttggaa gaaattgagc gagtaagagc aagatttaaa
     6661 tttttagatc ctacaggagt gggagctaaa gattataaag aagcattttt atttgctctt
     6721 gaaaatatgg agttagatga agatattgat gagttttgta gaatgttgat tatggatttt
     6781 gaaaatatac aaaactatac caaagagcct ttatataaag aagcattagc tgtacttaag
     6841 cgctttagca ctcccccttt tttggaatat tttgaagatt ctcgtataat tgttcctgat
     6901 atttttgttt ataaagaaaa tggtgaaatt aaagtaaaaa tcaatgatga ttattatcct
     6961 gaaatttcaa tccaaactga tggtttagag catgattttt taagtcatta catcaaagaa
     7021 gcaaaaaatt tagttgatgc tttagcgatg agaaaagcta ctctttataa aatagggctt
     7081 atgatagtag aatatcaata tgattttttc atgggaaaag agataaaacc tatgactttt
     7141 aaggatttag cacttgattt agaacgcaat gcttcgacta tatcaagagc tgtggcaaat
     7201 aaatatttaa gttgtgaaag aggacttatt cccttgcgtg atttttttgc ttttgctctt
     7261 gatgaagagg gagagacttc aaatgtaggt gttaaagaat ttgtggcaaa tttagtaaag
     7321 aatgaagatc gaaataaacc tttaagcgat agtaaaattt tagaattaat caaagaagaa
     7381 tttaaagtcg atatagggcg aagaactatt acaaaatatc gcaaacatct taatatagca
     7441 agctctacag atagaaaaaa attatatgaa cttgaaggat aaaattctat caatctatca
     7501 aacccattac acttttgttt tatatttaaa tttaatttaa ataatataaa aaattattgt
     7561 tttattttta gaaatattat tctttaattt aaaaatgtga tacaataata actgttttta
     7621 aatattaatt ttcaaaggag ttaaaatgga ctttttaaca agccttagtg agggagggca
     7681 atttgcaatc caaatcatta tcgttttaat ttgtcttttt tacggtgcaa aaaaaggcgg
     7741 catagcgctt ggtttacttg gtggtatagg tattttaatg cttgtatttg cttttcatat
     7801 aaagcctgga aaaccagcca tagatgttat gcttacgatt ttagcggtag tggttgcgag
     7861 tgcaactttg caagcaagtg gtggtttgga tgttatgctt caaatagcag aaagaatttt
     7921 aagacgcaat cctaagtttt tgacaatatt agcacctttt gtaacctgct ttttgactat
     7981 actttgtgga acaggacatg tggtttatac tattatgcct attatttatg atatagcgat
     8041 taaaaacggt attcgtcctg agcgtccaat ggcggcagct tctatatcat cacaaatggg
     8101 tattattgca tctcctgtat ctgtggctgt tgtgagtttg actgctttgc ttttaaatgc
     8161 taatcataaa ttagcaggtt ttgatggcta tatcaatctt cttcaaatta ctatacctag
     8221 tacgcttttt ggtgttttat gtgtgggaat tttttcttgg tttagaggaa aagatttgga
     8281 taaagatgaa gtatttcaag aaaaacttaa agatcctgaa tttaaaaaat atgtttatgg
     8341 ggattctaaa acacttttag gtgttaaact tccaaaaagc aattgggttg caatgtggat
     8401 tttcttagga gctattgctt tagtggcttt attaggtgta tttgatttct tgcgtccaaa
     8461 ctggggacaa gttgtaaaaa atggcattcc tcaagtagac gctttaggca atcctaaaat
     8521 ggatgtttta tccatggttt cagttattca gatgtttatg cttttagcag gttctttgat
     8581 tatcatcttt actaaaacag atgcaaagaa aatcggctct aatgaaattt ttaaatcagg
     8641 tatgatagct cttgttgcag tttttggaat ttcttggatg gctgatacta tgtttgcagt
     8701 tcacactcct atgatgaaag cagcgcttgg agatatagta aaagagcatc cttggactta
     8761 tgctgtaatg cttcttttaa tttcaaaatt tgtaaactct caagcagcgg ctatttcggc
     8821 ttttgctcct ttggctttag gaattggtgt tgaacctggt gtaattgttg cctttgcggc
     8881 tgcttgttat ggatattata ttttaccaac ttatccaagc gatttggcta ctatacaatt
     8941 tgatagatca ggtactactc acattggtaa atttgttatc aatcatagtt ttattttacc
     9001 aggtcttata ggtgtaatca cttcttgtat agcaggatat tttatcgcta tggcagcggg
     9061 ttatctttaa aaatttttag taggattttt cctgctaaat tcttcatttg tctttttatt
     9121 taatatagat aaaaattata aataaatcat aaaattagta ttaatcaaaa tataagctta
     9181 acaaggatag gataaatcct attttgaatc aatgagaaag ggctatccta tggatgttat
     9241 ctttgctttg cttctgcttt tagcttttgg tagtttatgg ttgtttatcc gtttttgtga
     9301 aattcaaact aggacaagcg gatgatattt ttactagttt taagcttaat acttgctctt
     9361 tatttatttt atgctctatt atatcctgaa aaattttaaa ggaaaaatat tctagaaatt
     9421 ttaataacac tgattatagc ttttatattg gctttaattt ttggaaatta tctttataaa
     9481 attgcaagct gtaaaaaaaa ctatttttga ttttattttt aatccaattg ataacttaat
     9541 ttataaaatt tgtgcaattg atagaaaaaa tatgacttgg caaaaattat tctttgcatt
     9601 taattgcttt taatgcctta gtggctattt tttctttcgt gattttttat ttacaagata
     9661 aactttttta aatcctaatt cgataaattc tatgaaaggg gatttgaatt taaatactgt
     9721 aattagtttt attacaaata caaaccttca gcattgtagt ggagagagtg ctttaagttt
     9781 gctttcgcaa aatacaggca ttttacttgc tatgtttgtt tcaagtgcga gtggatattc
     9841 tgcttgtatg gctttttgtc gtgctttatg tagtatgcaa atgggaaatt tttatgaaga
     9901 ttttacgcgt attattacgc gtttgatgtt gcctttaagt tttattttgg ctgtaatttt
     9961 tatctctgaa ggcgtggtgt aaaattatca cgcaaatttt agcgtgctta ctttagaaaa
    10021 taaatttcaa agcattgcca caggtcctgt tgcagctctt gagtctataa aacatttagg
    10081 gacaaatggg gggggggtgg tttttttggt gctaattcaa gcatgccttt tgaaaatcct
    10141 gctttactta caaatttttt gcaaatttta tccatgatgc ttattcctag tgcctgtgtt
    10201 gtagcttttg gattgatggt ttatcataga aaagaaagac aaggttttgc tcttatggga
    10261 aaagaagggg agttattttt ggtgcaatgg ggattatttt tatcatttct ttgcttttaa
    10321 tttattttag cgaaaaaatg tcaaatccaa atttggattc tttgggttta aatgcaaatt
    10381 tgggaaattt ggaaggtaaa gaaataagat ttggcacaga tggttcgagt ttatttagtg
    10441 ctgtaactac tgcttttact acaggaagcg tcaataatat gcacgatagt ttaaatccat
    10501 taagtatcag tgctactttg ctaaatatga tgctaaatgt agctttcggt ggcgaaggag
    10561 tagggcttat gaatatgatt atttatgtgc ttttaaccgt gtttatttgt gcattaatga
    10621 taggtagaac tccagaattc ttgggtaaaa aaatagaaag cgcacaaatg aagcttatag
    10681 ctttggtaat tcttatccat cctttattaa tccttgtttt aagtgcatta gctcttgttt
    10741 ttgcaaaaga tagtataagc aatcctagct ttcatggctt ggctcaaatt ttgtatgaat
    10801 ttagttcttc ggcagcaaat aatggttcag gacttgaagg tttaaaagat gataatttat
    10861 tttggaattt aagcacagct tttgctatgt tttgtgggcg ttatttggtt taatagctca
    10921 gcttgctata gctggatcgc ttttggctaa aaatacacaa gaaaatactg caaattcttt
    10981 aaaaacggat aatttaactt ttatgtttgt gcttgtttgt attatatata tttttgctgc
    11041 acttactttt tttccagtgc ttactttatc aagcgttgca gaatatttat ctttatggca
    11101 ttaaggagag tcaatgtcta aaaaacaaaa taaactcatt ataaaagaaa ttttaaataa
    11161 tgccataaaa ggagcatttt taaaatttga tccacgcttt atggtaaaaa atcctgttat
    11221 gtttatggtg gaagttggat tgattcttac tttgatttta agtatttttc ctactttgtt
    11281 taatggaaat tctgatgaaa gaatttataa catcttaatc acttttattt tatttgtaac
    11341 cttgcttttt gcaagttttg cagaaagtat tgcagaagga aggggtaaag cccaagcagc
    11401 taccttaaga caaagcaaaa aggattctaa agctagacgc ataaaaagtg atggcagtga
    11461 agaaatgctt aattctagcg agttaaaaat aggtgatata gttttagtta aagcaggtga
    11521 acttatacct aatgatggag aaattataga aggtgctgcg cgtcaaaaaa ctccaaatga
    11581 aattgctctt aatactcttt taattgtact tagtttgagt tttttggtgg tggttgtaag
    11641 tttatatcct tttatgcaat ttttaggcgc gagtttgcct atttcatggt tagtagcatt
    11701 gcttgtatgt cttattccta caactatagg ggggctttta tcagctatag gaatagcagg
    11761 tatggacagg gtaacgcgtt ttaatgtgat cgcactttca ggcaaggctg ttgaaagttg
    11821 tggtgatgtt gatactatga ttttagataa aacaggaacg attacttttg gaaaccgttt
    11881 ggcaaatgaa ttttatgaag ttcaaggtat aagtaaagaa gaaatgatta aagcttgtgt
    11941 tttatcctct ttaaaagatg aaactccaga aggtaaaagc atagttgcat tggctcaaaa
    12001 aatgggttat gaattagaag gtaatgatat taaagaattt atcgaattta gcgctcaaaa
    12061 tagaatgagt ggtgtggatt tgcaagataa tataaaaatt cgcaaaggtg cttttgatgc
    12121 tataagagct tatataagcg aaatgaatgg aaaaattcct agcgatttag aaactaaggt
    12181 aatggaaatt tcaaatcttg gtggtactcc tttggtagtg tgtaaaaatg aaaaaatttt
    12241 aggagtgatt tatctaaagg atacagtaaa acacagtaaa accaggactt aaagagcgct
    12301 ttgatgagct tagaaaaata ggcataaaaa ctttaatgtg taccggagat aatcctttaa
    12361 cagcagctac tatagccaaa gaagcagggc ttgatcgatt tatagcagaa tgcaagcctg
    12421 aagataaaat agaagctatt aaaaaagaac aagcccaagg taagatagta gccatgacag
    12481 gagatggaac caatgatgct ccagctcttg cacaagctga tgtaggtata gctatgaact
    12541 caggaactca agcagctaaa gaagcagcca atatgataga tcttgattct aatcctacta
    12601 aaattttaga agtagttgaa ataggaaaag gtttgcttat tactagaggc agtcttacaa
    12661 cttttagtat ggcaaatgat attgctaagt attttgctat tttacctgct atgtttagtg
    12721 tggttttacc tcaaatgcaa attttaaata ttatgcattt agctaccccg caaagcgcta
    12781 ttttatcagc acttattttt aatgctatta ttatactttt gctcatacct attgctatgc
    12841 gtggagttaa atttaagcct atgaaaagtg agcatttgct tttaagaaat ttgagtattt
    12901 atggtttagg tggtatgata gcacctttta tagggataaa aataattgat attcctacag
    12961 cttggatact tagaatttta ggagtgtgat atgcttagaa ctttgcttag tttttttgtg
    13021 gtaatgctaa tattgtgtac tcttatttat ccttttgctt taaatacagt tgcaaaattt
    13081 atttttcctt atcaatcaag tggaagttta gtgggtaaag aaggtcgtcc gactttggat
    13141 ataagcaaag cggtaggttc aaaacttttg ggtcaagatt ttaataagcc ttattttcta
    13201 cattcaagag catctgtatc aaattacaat acaagtgata caaatgaaag cagtgtaagt
    13261 tcaggtggat ttaattatgc tatgtcaaat cctgctttaa aagagcgtgt gcaaaaagat
    13321 ttgcaaaaat ttttagatga aaatccgcaa attacaaaag aacaaattcc tttggattta
    13381 ttaagtgctt caggatcagg tcttgatcct catatcagtc ttcaagcagc cctagtacaa
    13441 attcctagga taagtcaatc ttcaaaaatc accaaagaag aactagaaaa aatcattcaa
    13501 gaaaataccg agtctaaatt tttagggatt tttggggaag aaaaggttaa tgttttagct
    13561 gttaatatag ctattgctaa agccatgaaa aaagaataaa catgcaaaga caaagtcctg
    13621 aacaaattct taaaaaactt gaggttaaag ctaaggaaga agaaaaaaac aaacttgcaa
    13681 aattaaaaat tttcttaggt tatgctgcag gttctggaaa aacttatgct atgttaagtg
    13741 aagccagaac tttaagggat aatggagttg atgttgtttt aggctatata gagcctcacg
    13801 atagacctga aacaatggct ttaacacaag gttttgaaag tatagctaat cttgaaattc
    13861 cttataaaaa tatagtatta aaagaatttg atttagacgc tacccttaag agaaagcctg
    13921 ctttggtttt agtagatgag cttgcacact aatgctaaag gcttgcgtaa tgaaaagcgt
    13981 tttcaagata tagaagaact tctaaaagca gggattgatg tttatactac tttaaatata
    14041 caacatttag aaagcttaaa tgatttagtc gctaatatca gtaagataga agttaaagag
    14101 cgtattcctg atcgtatttt tgatgaggct gatcaggttg aacttgttga tattgaacct
    14161 aataagcttt taaaaagaat gcaagatggt aaaatttata aggaaaaaca agctaaacta
    14221 gcacttgaaa atttctttcg ccaagaaaga cttatagctt tgcgtgagat tgccttaaga
    14281 agacttgctt caagagtgaa tttaagagca agtgaacaaa ggcttattaa tgatgattta
    14341 gcttatcata ctggagagca tattttagtt tgtattaatg cttcaaatgc aaaggttatt
    14401 cgtgcagctg caagacttgc tttagctttt catgctaaat tgagtgcgct ttatatgaaa
    14461 aatcccaata ttaaagaaga aaaagcctta gaagaaaata tagaactagc taaaagtttt
    14521 gatgctgaaa tcattagcgt atatgatgat atagcaagac aaattgcaga gtattcaagt
    14581 cttagcaatg tttctaaaat tgttttaggt aaaaataaag ataaaaaagt ttaaagaaga
    14641 gatttttgaa gctgttgcta aaaaagcacc caatattgat ttatatattg ttaatgaaa
//
LOCUS       DARGEM010000035        14679 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.035, whole genome shotgun sequence.
ACCESSION   DARGEM010000035 DARGEM010000000
VERSION     DARGEM010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.035"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            4..555
                     /locus_tag="SFZ78_000797"
     CDS             4..555
                     /locus_tag="SFZ78_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8211681.1"
                     /translation="MKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDMNF
                     KLNLIDGGSISVKKENVVLNFNDEGKAILFVFFTTWCTPCIAEIPHLNKLQEKYNNDF
                     NIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKHSK
                     LINQYLGLIPEEMLEIDIQKAIL"
     gene            555..1421
                     /gene="ftsY"
                     /locus_tag="SFZ78_000798"
     CDS             555..1421
                     /gene="ftsY"
                     /locus_tag="SFZ78_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG8211682.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1421..2761
                     /gene="radA"
                     /locus_tag="SFZ78_000799"
     CDS             1421..2761
                     /gene="radA"
                     /locus_tag="SFZ78_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG8211683.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2830..3510
                     /locus_tag="SFZ78_000800"
     CDS             2830..3510
                     /locus_tag="SFZ78_000800"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG8211684.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3507..3698
                     /locus_tag="SFZ78_000801"
     CDS             3507..3698
                     /locus_tag="SFZ78_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211685.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3720..4568)
                     /gene="metF"
                     /locus_tag="SFZ78_000802"
     CDS             complement(3720..4568)
                     /gene="metF"
                     /locus_tag="SFZ78_000802"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG8211686.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKIIQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4578..6842)
                     /gene="metE"
                     /locus_tag="SFZ78_000803"
     CDS             complement(4578..6842)
                     /gene="metE"
                     /locus_tag="SFZ78_000803"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG8211687.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6854..7624)
                     /locus_tag="SFZ78_000804"
     CDS             complement(6854..7624)
                     /locus_tag="SFZ78_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8211688.1"
                     /translation="MTLFTKAFCVATLFTGFAWADEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7635..8627)
                     /locus_tag="SFZ78_000805"
     CDS             complement(7635..8627)
                     /locus_tag="SFZ78_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG8211689.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYIEQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPSNA
                     FDKLYGKNSYEHCKIIHYPKSSKNTTQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(8940..9434)
                     /gene="luxS"
                     /locus_tag="SFZ78_000806"
     CDS             complement(8940..9434)
                     /gene="luxS"
                     /locus_tag="SFZ78_000806"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG8211690.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9549..10967
                     /gene="gatB"
                     /locus_tag="SFZ78_000807"
     CDS             9549..10967
                     /gene="gatB"
                     /locus_tag="SFZ78_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG8211691.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSIFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFKSLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKEKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            10964..11860
                     /locus_tag="SFZ78_000808"
     CDS             10964..11860
                     /locus_tag="SFZ78_000808"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG8211692.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            11870..13048
                     /locus_tag="SFZ78_000809"
     CDS             11870..13048
                     /locus_tag="SFZ78_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8211693.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13056..14582)
                     /locus_tag="SFZ78_000810"
     CDS             complement(13056..14582)
                     /locus_tag="SFZ78_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG8211694.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKEQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
BASE COUNT         4860 a         2110 c         2540 g         5169 t
ORIGIN      
        1 aagattaaaa aaatactttt actagtggca atatcttgtt tgtttgttgc ttgtagcaat
       61 gataaagaaa aacagcaaaa tgatgtaaat ttaagcaccg aggcaagtat aaatcaaagt
      121 gatgatatga attttaaact taatttgatt gatggaggat caatttcagt taaaaaagaa
      181 aatgtcgttt taaatttcaa cgatgaaggt aaggcaattt tgtttgtatt ttttaccact
      241 tggtgtaccc cttgcattgc tgaaatccct catcttaata aattacaaga aaagtataat
      301 aatgatttta atatagttgg ggttttatta gaagataaat ctaacgatga gattcaaaaa
      361 tttatagaac agcataaaat atcttataaa gtcgctaatg gtgaaaataa ctatctttta
      421 gctaaagctt taggtggggt aaatggaatt cctaccatgt ttctttacaa taagcattct
      481 aaattgatta atcagtattt agggcttatt cctgaagaaa tgctagaaat cgatatacaa
      541 aaggctatac tttaatgttt aattttttta aaaaaggact tgcaaaaact cttgaaaata
      601 ttgttgggat taaaggagag aataaaaaga taaccaaaga tttgcttgaa gaaattttgc
      661 ttgaagcaga tgtaagttat gaaatagttg aagagataat ttattattta ccacctcaaa
      721 atgaagtaaa aaaagaagat ttaaagcgtg ttatgggttc ttattttctt tatgaaaaaa
      781 aagaaaccaa tcaagaaaaa ccttttgtag agcttatttt aggagtaaat ggagcaggaa
      841 aaacaacaag tattgccaaa cttgcttatt tatataaaaa ccaaaatcaa aaagtgattt
      901 taggagcgtg tgatactttt agagcaggtg cgattgaaca attaaaactt tgggcgcaaa
      961 aagtggatgt agatatagtt ttaactgcac aagggcatga tccttcagcg gttgcttttg
     1021 ataccatttc taaagcaaaa gcaaaggatt ttgatagagt tattatcgat acagcagggc
     1081 gtttgcaaaa tcaaaaaaat ttagcccatg agcttgaaaa aattgtgaga atttcaaaca
     1141 aagctttaga aggtgcaccc catagaaaaa ttttagtttt agatggaaca cagggaaatg
     1201 ctggaatttt acaagctaaa gcttttaatg agcttgtaaa acttgatggt gtgattatca
     1261 caaagcttga tgggacagct aaagggggtg cactttttag tatagcaaga gagcttgagc
     1321 ttcctatttt ttatgtaggc gtgggtgagc aaatgacgga tttgcaagaa tttaatgcaa
     1381 gtgcttattt agatacttta ttagatccta tttttgaata atggcaaaaa ataaagcact
     1441 ttttgaatgt caagcttgtg gaaatcaaca aagcaaatgg cttggaaaat gtcctgattg
     1501 tggagcttgg gatagttttg tagaattaaa agctgagcaa attaaagttt taaaagagct
     1561 tgcgcaagtt agtatgaaaa caagtgaagc tgtttgtatt gaagatgtgg aattagaaca
     1621 ttttacaaga tacagcacag atgataatga gcttgatttg gttttaggcg gagggcttgt
     1681 tgaaggttct ttagtgctta taggcggaag tccaggtgtg ggaaaatcta cgcttttgtt
     1741 aaaaattgct tcaaatttag ccaaacaggg taaaaaagtg ctttatgtca gtggcgaaga
     1801 aagtaaagct cagattaaat taagagctga tcgccttgag gctaatactc cgaatttatt
     1861 tttacttact gaactttgcc ttgaaaatat tttagaagaa ttacataaaa aggattatag
     1921 tattcttatc attgattcta tacaaactct atattcaaat aaagtcactt cagcagcagg
     1981 aagcatcact caggtgcgtg agattacttt tgaacttatg cgtgttagca aggcttataa
     2041 tatcagtact tttatcatag ggcatattac taaagaaggt gctatagcag ggcctagggt
     2101 tcttgagcat atggtagatg tggtgcttta ttttgaagga gatgccacta aagaaatcag
     2161 acttttaaga ggctttaaaa atcgttttgg tggaacgaat gaagtaggta tttttgagat
     2221 gactgctaag ggtttgatta gcgcaaaaga tttagcaaat cgttttttta ctcgtggaaa
     2281 ggctatttca ggaagtgctt taggtgttgt gatggaagga tctcgtgcct tggttttaga
     2341 agttcaagct ttagtgtgtg aaagttctta tccaaaacgc agcgctacag gatatgaaaa
     2401 aaatcgctta gatatgcttt tggctttgct tgaaagaaaa cttgaaattc ctttagggca
     2461 ttatgatgta tttgtaaata ttagcggcgg agtaaaagta agtgaaactg ctgcggattt
     2521 ggctgtggtt gcagctatta tttcaagttt taaaaatcgc cctttgagca aagatagtat
     2581 ttttataggg gagcttagtt taaatggaga aattagagag gtttttagcc ttgatacgcg
     2641 tttaaaagaa gctaaaatgc aaaaatttaa aaatgccatt gttccttcta agcctttgga
     2701 agatataggg cttaagtgtt ttgttgctaa agaactttca caagttttag aatggatgta
     2761 aattttcatt aaaatataag taagattttg ctaaaattcc gagtttagaa taaaattttt
     2821 gaggaaacca tgaaagattt atttttattt agctctttgc ttgatgcaag tcatactttt
     2881 tcttattttt ttcacatagg tttggtagct ttaattgctg ttatagtggc tatgatggct
     2941 actcgttcta tgcaacttgt tccacgcggt atgcaaaatt taggcgaggc ttttttagag
     3001 ggagttttat ctatgggtag agataccatg ggaagtgaaa aaggtgcaag aaaatatctt
     3061 cctttggttg caactttggg gattatagtg ttttttagta atattatagg cataatacct
     3121 ggttttcact ctccaactgc aagtttaaat ttgactttgt ccttggctat tatagttttt
     3181 gtatattatc attttgaggg tattagggcg caaggttttg taaagtattt tgctcatttc
     3241 atgggaccta ttaaactttt agctcctttg atgtttccta tagagatagt ctctcatctt
     3301 tctcgtgtgg tttctttgtc cttccgtttg tttggaaata ttaaaggtga cgatttattt
     3361 ttgatggtaa ttttagcttt agttccttat atagctccac ttcctgctta tgtgctttta
     3421 acttttatgg catttttaca agcttttatt tttatgattt taacttatgt atatttagcg
     3481 ggtgcaactg ttgttgagga aggtcattga tctatatttt agaatttttc aaaggtgcat
     3541 ctttagcttt aatgcttttt ggtgcacttt tcttcttttt taaatataat tcttttttct
     3601 atctttgctt gggtattata ccaggtttgc ttttatcttt aatttttgtt ttacttatag
     3661 aaaaccataa gctaaaaaat gaaaataagt taagataaaa gcaaaaaata gtttattttc
     3721 taagcatgaa gctcttcttt aagcaaatgc tttacagctt cataaatttt aatagccgct
     3781 ttggatttat tcatagtata aagatgaatt ccatctacac cacttgtgat taaatcgaca
     3841 atttgatcgc aagcatacgc gatacctgca tcttctaaag ccaaagtatt attttcatat
     3901 ttttctaaaa ttttaacaaa tttaggaggg attttagctc cgcaaagttg agaaattttt
     3961 aaaacctgtc ttttgttagt aataggcata atacctgcgt aaataggtat gtcaatacct
     4021 gctaaagcac aattttgttt aaaagtataa aaatcttcat tatcgtaaaa aagttgagta
     4081 atgagcttat ctgttcctgc atttacctta gttttaagat ggtgtatatc ctcgatgaaa
     4141 tttttagatt cattatgttt ttcgggatag catgcggcat aaatttcaaa gtattcttgt
     4201 ttttttataa aagaaattaa atcactagca taagaaaaat ctttgctttt ttctaaattc
     4261 tcacatatat cgcctcttag ggcaagaatt tgattaagat ttttttcttt gcatttttga
     4321 agtatctgaa tgattttttc tttactagaa tggatgcaag gtaaatgtac tatgctagga
     4381 atttgatatt cttcctggat taagcttgca atttctaaag tgttttgtga gttaatagag
     4441 cctccagctc caaaggttac gctgataaaa ttagggctta attgccctaa atcatctaag
     4501 atagcatgaa gatttttgat attttcatcc tttcttggtg gaaaaacttc aaaagaaaaa
     4561 ctacacatga aaactcctta taattgttct cgtatttttt gcgtagccgt aactaaattt
     4621 ttaagagagg ctataacttc ttcataggct cttgttttaa gtccgcagtc tggattgatc
     4681 caaatttgct ccttgggtaa tttgtttaaa attttttcta tagttaaact taattcttct
     4741 acgcttggaa ctctagggct atgtatatca taaactcctg gtcccacctc agttttaaaa
     4801 cgaatagctt ttagggtatc taaaagactt aagtttgatc ttgaagcttc aaaagaaatc
     4861 acatcagcat ccatagcgtc aatttctttt aagatatcgc taaattcact ataacacata
     4921 tgagtgtgaa tttgagtttt agcttttacc ccactatgca caagattaaa agcaggaata
     4981 gcccaatcta aatactcact atgccaatca cttttcctta aaggcagttt ttcacgcaaa
     5041 gccgcttcat caatttgtat gatttttata cctgcatttt caagatctaa tacttcatct
     5101 cttatagcta aggcaatttg ctcagtgctt tcttttagac taatgtcttc tcttggaaag
     5161 gaccaattaa gtatggttac aggtccagtt agcatacctt ttacgatttt ttgacttaaa
     5221 ctttgtgcaa atttagacca agctaaggtg ataggcttta tgcgcgatac atcaccccaa
     5281 atcacaggag gtttaacgca ccttgtgcca tagctttgca cccaaccatt ttgagtaaat
     5341 aaaaagccct ttagattctc tccaaaatac tccaccatat catttctttc aaattctcca
     5401 tgcactaaaa catcaagtcc tatttcttct tgaatttgta tgcattcttt gattttttgt
     5461 tggttaaatt cagtgtagtt ttgagctgaa attttttctt gcttaaaggc aaggcgatta
     5521 gatcttacat cagcactttg aggaaacgaa cctatggttg tggttggtaa aagagggagt
     5581 tttaaaaatt ctttttggat taaggcgcgt tctttaaaac taggcgttct ggtaaaatct
     5641 tcttttttta aagccttaag ccttgctttg actttttcat ctaaacgctc tgggatattt
     5701 ttaaaaagct cttgattggc tctaaagagc ggattttctt cgctagaatt tagaatttct
     5761 tttaaatctt taagttcttg aagtttttct ttggcaaagg aaaaaagttt aagatagttt
     5821 gaatctaatt tgctttcaaa ttcagtgcta taaggcacat gtaaaagtga gcaagaagtg
     5881 tttaagatga tattttgtgt atatttttga agctctttaa taagctttag gcttttagca
     5941 taatcattag tatagatatt tttgccatta ataagacctg caaaaaggat tttatcttta
     6001 gcaaagccgt atttttgaac taaggctaag ctttgtttac cttcgataaa atcaagaccc
     6061 aaagcatcaa atttgctttc taaaagttta ggataaatat ctcttaagtc tccaaaatag
     6121 ctttgaagta aaattttaag atcttttttg tgatttaaaa gttcttggta aaattcttca
     6181 aacaaagcga tatcttcctt gcttaaatca taaaccaaat aaggctcatc aagttcaagc
     6241 catgtcactt taagttcatt tagtttatca aaaagctcta tgtaagcgtt taaaagcttt
     6301 tctttggcga gtttttgagt tttttcatct ttaaaggcaa tgagcttaaa aagtgtgaaa
     6361 atgcctatta aaacaggctt gctttctatg ccaagctctt tagcttcgag atattcttta
     6421 aaaattttat cccctgttaa agctataata tcagcattat cgcactcagg caccaaataa
     6481 tgataatttg tattgaacca ttttttcatt gctaaggctg taacatctcc attttctcct
     6541 tgataacctc gactttgagc aaagtattca tctaaagcat ctaaatttaa atttttatac
     6601 tttgtatgaa caatgttaaa aagcacagct gcatctaaga cattatcata aagtgaaaaa
     6661 tcattactag ggataaaatc aatgccagct ttttgaattt cttgccagtg tctaatcctt
     6721 aaatccttag cactctttaa aagctcctct ttagaacttt ggtttttaaa gtatttttca
     6781 atagcaaatt ttaattctct atttgcacct attcttgggt aagaaatgat tgaatttttc
     6841 atatttgttc tccttaaaat gtagggatta aagcaccctg atatttttct tctataaatt
     6901 ttttaacttc atcgctttgc aaggccttta ctagggcttt gattttagga aggttttcat
     6961 taccttcttt aacggcgatg atattgccat attcactata tttactttct gtataaagcc
     7021 catcttttac agggtttaaa cctgctaaaa tagcaaaatt gctattaata agagaataat
     7081 ctacatcatt taaactcctt gtaagttgag cgtcttttaa ctctacaaat ttaagcttct
     7141 taggattttt agtgatatct aaaggagtga tgagctcatt atccttaact tctataagtc
     7201 ctttgcttgc tacaatgcgt aaagcacggc tttcatttgt aggattattg ggtatagaaa
     7261 tgctttgtcc ttcctctggg ttaaattctt tatatttttt tgaatacact gccataggtt
     7321 ctatatggat actggcaact tttacaagat gggtgccttg cctttgattg aattctttta
     7381 aataaggttc atgctgaaaa taattagcat ctaactcacc attttcaacc attacattag
     7441 ggattacccc atcattaaat tcataaattt ttaaatcata accttgtttt tgaagtgctg
     7501 attttataaa tcttaaaata tctgcatgag gtgttataga agagccaact ttaagttctt
     7561 catctgccca tgcaaaaccg gtaaaaagag tagcgacgca aaaagcttta gtaaataaag
     7621 tcattttttc tcctttatgc aaaactaaat ttttctatca agtcactatg ataaatactt
     7681 gctacatcag gatgagagcg tatcattctt ttaaaataat tacttgcaac atttcttaaa
     7741 agtggatttt taggatcagt atccacacct ttgctttctt tggcaagctc tggatttaac
     7801 ttaaaaatag gtatatcctt atcaagttgc actccaagaa aataagctat gctaaagcgt
     7861 tcttttgggc ttaaattcac gcggtgaata gtagctttta aatagccatt ggtagctagt
     7921 tctaaaaatt ctcctatatt aactacaacg ctattttcaa gtgggggtat actaagccat
     7981 ttaccatcta taaaagcttc aagtccgctt tgtttttctt gaaaaacaaa agtgataagc
     8041 ccgccatctt tatgtgaacc cacgccttga gtagtgtttt ttgaactttt aggataatgt
     8101 atgattttac aatgttcata agaatttttt ccataaagtt tatcaaaagc attgctaggt
     8161 agatcaagag cttgagcgaa ggcttttaaa agctttaaac aagctttttt ggtttgtttg
     8221 tgccaagtta agaaagtttt tttaagttct ggaatttcac taggccaaag attaggacct
     8281 tctagtcttt gccataaggg tgagtttaaa ttccagttta aagcatctct ttctgtgcct
     8341 atatccagtt gttctatata atccttagat cctgctgtgt attcaaaacc ttcgctagta
     8401 taacctctaa attgaggaga atgtaccata gaaataagct ctttcgaact tctagaaaga
     8461 ttaaaaaatt ctttgccaag tttgaataat ttctcgttta aatttttatc tatactggta
     8521 ttgataagat aaaaaaaacc tattttagaa gcaatttctc ttaaattttt aagaaaagtg
     8581 cttttatctt tttcataagc ttgtaaatca agtataggta agttcatttt tgctccttaa
     8641 attaaaatta aggataagaa gatattttga attaaaattt tattagagaa atttttgtaa
     8701 gttaagattt taaatgagta ttttgaaaaa ataaactttt ttgactttct tacacattat
     8761 atctccttat ccactttttg gacctttgga aacataatgt taagccaaag gacgcactag
     8821 atactacaca tctcgcacat cagtttcatt ttttctcctt attaaaataa taaaatttca
     8881 aaatcatata taaaaatata ttaattaaag cttaattgtt taaaaaataa agattctttt
     8941 taagcattct cgagttttaa ttctttgtta ttcattatgc taatacctag atttaaaacc
     9001 ttttgggcaa tttgtttggc ttcatctaaa gaatgcattg cgcaagttcc gcattgatag
     9061 atattaagtt caggaatttt gctttgatcg cttacgctta aaacatcttt catagctgct
     9121 ttccaagctt tagcaacact tttttcatct ggtgttccaa ttaaactcat ataaaaaccc
     9181 gtgcgacaac ccataggtga aatatcaata atttcaactg aatttgaatt taaatgatct
     9241 ctcataaatc ctgcaaataa atgttctaag gtatgagtac ctttttcgct cataatgtct
     9301 ttatttggta tgcaaaaacg caaatcaaac acgctaatat catcgccctt aggtgttttc
     9361 ataactttag ctaaacgcac agcaggagct ggcattttag tatggtcaac tttaaagctg
     9421 tctaataatg gcattttaac tccttaaata taaattgtct aagaattata gcatttaaag
     9481 ttaatattta aagcctttct aaaagaaaaa aagataaaat aaaacattta aaaattcaag
     9541 gaaattttat gtttgaagta gttataggtc ttgaagttca tactcagtta aatacaaaaa
     9601 caaaaatctt ttgctcatgt gcaacttctt ttggagaagc tccaaatacc aatgtttgtc
     9661 ccacttgttt ggccttacca ggagctttgc ctgttttaaa tgaagaggct gtaaaaaaag
     9721 ctatagcttt tggaaaagct gtcaatgcaa caattaataa aaaaagtatt tttaatcgta
     9781 agaattattt ttatccagat ttacctaaag cctatcaaat ttcacaattt gatatcccta
     9841 tagtagaaaa gggtgagctt tttatcaatg taaagggtga aaataaacgc ataggtatta
     9901 caagagcaca cttagaagaa gatgcaggta aaaatatcca cgaaaataat ttttctaaag
     9961 tggacttaaa tcgtgcagga actcctttgc ttgagattgt cagcgaacct gagcttagaa
    10021 gtagcgatga ggcagtagct tatcttaaaa aacttcattc tattatacgc tttttagaca
    10081 tttcagatgc aaatatgcaa gaaggaagtt ttagatgcga tgcaaatgtt agtataagac
    10141 ctaagggcga tacaaaactt tatactagag tagagattaa aaatcttaat tcttttcgtt
    10201 ttatccaaaa agctatagaa tatgaggtaa aaagacaaag tgaggcttgg gaagatggaa
    10261 cttacgaaca agaagtagtt caagaaacta gactttttga tacgacaaat ttagttacaa
    10321 gaagtatgcg tggcaaagaa gaagcggcag aatatcgcta ttttcctgat cctgatttat
    10381 tgcctgtttt attaaaagat gagtttttgg atattaaaat ccctgaactt cctgatgaga
    10441 agaaagcacg ctttatagac gagcttggta taaaagaaag tgatgctgag gttttaatca
    10501 gttctttaga aatgagtcgt ttttttaaaa gtcttatttc tcaaaattta aatcctaaac
    10561 tttgtgtaaa ttggttaaat actgaactta tgggactttt aaaaggagaa ttgactatag
    10621 aaaattctcc cgtagatgct caaaagcttg gagttttaat taaacgcata gaagatggca
    10681 ctatcagtgc aaaagcggct aaagatgttt tggcttttgt atttgaaaat actagcgtgg
    10741 aaattgatga agctatagaa aagctaggac ttaaacaagt aagtgatgac tcagccatag
    10801 aagcggtgat tgaacaaatt ttaaatgcaa atgccgataa ggttgcagag tataaaagtg
    10861 gtaaagagaa gctttttgga ttctttgtag gtcaaaccat gaaagaaggc aaaggagctt
    10921 ttaatcctgc aaaagtaaat gaaattttaa aaacaaagct tggttgatgc gtatagcggt
    10981 tattggtgcg ggaaaatggg gcagtgcttt acatctagcc ttaaaagaaa atcacaattg
    11041 ttttatcagt tctttgcatc agcgtgattt agaagatttt gttagcataa aagaagcttt
    11101 agaatgtgaa tatcttgttt ttgctttaag ttctcaaggg atgcgtgctt ggcttaaaga
    11161 aaatttcatc aacaagggac aaaaaatttt aattgcttca aaaggcatag aagatcaaag
    11221 ttgtcaattt ttagatgaaa tttttttaga ttttgtacca aaagaaaatt tttgtgtttt
    11281 aagcggtcct tcttttgctg ctgaagtgat gcaaaaactt cctactgctt tgatgattag
    11341 cgggataaat caagagcttt gtaaaaaatt tgcaagtttt ttccctgatt ttattaaaac
    11401 ttatattgat aatgatgttc gtggtgctga aatttgtggt gcttataaga atgttttagc
    11461 aattgcaagt gggattagtg atgggttaaa acttggtaat aatgcaagag cagcactgat
    11521 ttcaagagga cttatagaaa tgcatcgttt tggtaaattt tttggcacta aagaagaaac
    11581 ttttttagga ttgagtgggg caggggattt gtttttaact gcaacgagtg ttttatcaag
    11641 aaattataga gtgggtttaa aactggcgca aaatcaaaaa ttagatagta ttttagccga
    11701 acttaatgaa gtagcagaag gtgtaaaaac tgcttatgct atagaaaaac tagcaaaaat
    11761 gaaaggaatt tatacaccta ttgtaaatga agtagtggca atttttaagg gtaaaagcgt
    11821 gcaagaagca acgcagaatt tattaaagca aaatgattaa ggaaaaatca tgataattaa
    11881 aaatgcaaaa atttatggag attctttaca agatatagag attaaagaag gaaaaattac
    11941 caatattggt tctaatttac aaggcgaaga aattttagat gctaaaggta tgactttact
    12001 tccatctttt gtggatttgt gtgtgagttt aaaaaacgat aaattttctt tagctaattt
    12061 agagctttta gaaaatgagt gtctaaaagg aggaatttct agtatagttt tgcgtgattg
    12121 catggatttt gatgaagaaa gttttgcttt atttttacaa aatttagctc aaagaaagat
    12181 gcaaattttt tcaagtgtgc gggttaagga tacaaacggc aagcttaaaa atttagccac
    12241 tcttttaaat aaaggtgctt gtgctctaga acttgacagc tctttagatg caaatacttt
    12301 aaaagtaagt tcacaatatg cttttatgaa agactctcca atttttgtgc gttgttatga
    12361 taaggatttt gatgataatg gagtgatgaa tgattgtgaa atgagttttg agctagggct
    12421 tataggcatg agtaaaatcg ctgaaactag ccagatagct aaaatgaaag aattggctaa
    12481 attttataaa aataaagtta tttttgatct tttaagtttg aaagattctt tagtattatt
    12541 agatgaaaag gatttaaaac ttgtaagcat tcatcatctt atcaaagatg atagtgcttg
    12601 tgaagatttt aatacggctg cgaaacttat gccaccttta agaagcaaag aagatgtttt
    12661 ggctttaaga gaggctttaa aagaaggaaa gattagcttt ttaacttccc tgcatagtgc
    12721 aaaatcaatt tctttaaaag atttagcttt tgatgaagcg gcttttggaa ttcatagcgt
    12781 atgcgaattt ataagtcttt gttatacttt tttaatcaaa gaaggatttt taaattggca
    12841 agagctttgt cgatttacaa gtaaaaatcc tagtgaattt ttaggtttaa atagtggagt
    12901 tatagaagtt ggcaaagaag ctaatctagt tctttttgat gagaatgaag aaatttttgc
    12961 tccaaaaagt tctctttatt ctgaggataa actttttgga aagattaaga tgcatataat
    13021 taaaggaaaa aatattttag aaaaataagc tttacttaaa ttcctaaaga tagtttaaat
    13081 cctaaaaata caagtgctgc cataatacca gcggctggta aagtgataat ccaagccaat
    13141 cctataggct tcatcataat ccaatttgcg tttttattat acactcctat acccaagata
    13201 gcacctatga gtatatgggt ggagctaaca ggaattccaa attgtgtagc taagagtata
    13261 actatgcttg caccaagttc tgcagaaaat ccagtagtag gccgtatggt tgcaagtttt
    13321 gaacccactg tagtaatcac ttctttacct aaaaaccaaa gtcctacaac tagagcaact
    13381 ccaaacatag ctaaagcagc aaaaggtaca ggagaagtcg cgttaattgt gccgtttttt
    13441 aagacatcta aaatcgctgc aaaaggacct atagcattgg ctatatcatt ggctccgtgt
    13501 gaaaatgcaa aactagaggc tgtaaatatt tgaaaccatg agaaaattct atcagtagtt
    13561 ttattaagtt ctgttttttt aacgattttg actatagcaa atgttacaac ataacttata
    13621 gttcctataa ttccgataat ccaaaagttt tgtaaaatat ccaaagtgct aacattattt
    13681 aaacctttaa ataaaaacat tgccgaaatg atagcagcag caatacaagc aatgattggc
    13741 atatgagttt ttaaaataga gtaaatatct atatcttttt cttgttcttt aaattccttc
    13801 attttatttc tatagaaatt attttcttgt tcttcttcat ccaaagctat agcggaaagt
    13861 tctttgattt gttcttcttg ggattttgtt tttaaattta aaaaatattc ttctttgaat
    13921 ttttttcttt cttttttgat atttttcaaa tcatcattta gtttttctga tggttttaaa
    13981 attttcttat caatatatga ataaataata taagctacaa taccccctaa aagaggcgaa
    14041 gctacccaag aaatagctat tcttaaaatt tcactccatt taaccataga gagtgtttgg
    14101 attccatcaa attttaaaag ccccatcata atactagcac ctacaatccc accaactata
    14161 ctgtgtgtgg ttgatacagg taagcctttc ttggttgcaa taaaaatcca aaccccagag
    14221 cttaaaagtg cagcaagcat aatgataaca aaaagcatag gatctaaaga atttggaaaa
    14281 ataacaatac cgctgcgtat ggtcttagta acttctgcgc ctgcgaagat tgccccgctt
    14341 agctcaaaaa cagctgctat aattaaagct tgtttaatgg ttactgtttt tgcgccaacg
    14401 cttgttccaa aagaattggc tacatcattt ccacctatat taaatgccat aaaaatgcca
    14461 aatatagaag caagaataaa aagaatcaat tgatgttgcg aaatataacc aaatccccaa
    14521 ataacaaatg cgatagtact gataataaaa ataacaaaag ctatgaggtt gtctttttgc
    14581 attaataacc cttttttatt ttaattatac acttatttac tttaaatttg ctaattttat
    14641 tttttagtct ttgtggaatt tttatttata ttatttttt
//
LOCUS       DARGEM010000036        14189 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.036, whole genome shotgun sequence.
ACCESSION   DARGEM010000036 DARGEM010000000
VERSION     DARGEM010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14189
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.036"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            77..979
                     /gene="mltG"
                     /locus_tag="SFZ78_000811"
     CDS             77..979
                     /gene="mltG"
                     /locus_tag="SFZ78_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG8211695.1"
                     /translation="MIFILGIFYYLTQPLKSNSVVFIPQGSISQIITYLKQNKYQMSN
                     IDKYILFFLGHPQSGWINIGTKDLNRAEFLHKLTIAKAALQTITLIPGETSVIFLEQA
                     AKQLGLDKDILLKEFQAQAPYDEGVFLPETYKIPKGITENLLIQMLLNHAEISNKKTS
                     EKIFGDYNPKKWHQYIIIASVIQKEAANDNEMPIVASVIYNRLKKGMKLQMDGTLNYG
                     IYSHVKVTPQRIRQDNSSYNTYKFTGLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDK
                     NTGVHIFSTNIDDHNKAINLQKGK"
     gene            1060..1491
                     /gene="flgB"
                     /locus_tag="SFZ78_000812"
     CDS             1060..1491
                     /gene="flgB"
                     /locus_tag="SFZ78_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG8211696.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1501..1995
                     /gene="flgC"
                     /locus_tag="SFZ78_000813"
     CDS             1501..1995
                     /gene="flgC"
                     /locus_tag="SFZ78_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG8211697.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2002..2298
                     /gene="fliE"
                     /locus_tag="SFZ78_000814"
     CDS             2002..2298
                     /gene="fliE"
                     /locus_tag="SFZ78_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG8211698.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2305..4113
                     /locus_tag="SFZ78_000815"
     CDS             2305..4113
                     /locus_tag="SFZ78_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8211699.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4110..5878)
                     /locus_tag="SFZ78_000816"
                     /pseudo
     CDS             complement(4110..5878)
                     /locus_tag="SFZ78_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
     gene            complement(5882..6316)
                     /locus_tag="SFZ78_000817"
     CDS             complement(5882..6316)
                     /locus_tag="SFZ78_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211700.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDVYPKF
                     CDLIDEKIRQFKENVQNTNLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6316..6633)
                     /locus_tag="SFZ78_000818"
     CDS             complement(6316..6633)
                     /locus_tag="SFZ78_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG8211701.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KSY"
     gene            complement(6630..8456)
                     /gene="htpG"
                     /locus_tag="SFZ78_000819"
     CDS             complement(6630..8456)
                     /gene="htpG"
                     /locus_tag="SFZ78_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG8211702.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDASK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLAKIINKAFS"
     gene            complement(8529..8897)
                     /gene="crcB"
                     /locus_tag="SFZ78_000820"
     CDS             complement(8529..8897)
                     /gene="crcB"
                     /locus_tag="SFZ78_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG8211703.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKCLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYPHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(8891..9583)
                     /locus_tag="SFZ78_000821"
     CDS             complement(8891..9583)
                     /locus_tag="SFZ78_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG8211704.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9564..10760)
                     /locus_tag="SFZ78_000822"
     CDS             complement(9564..10760)
                     /locus_tag="SFZ78_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8211705.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPLSDENNDFESNVDDPFVAKGSLVLTNNEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFVLSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10757..11404)
                     /gene="purQ"
                     /locus_tag="SFZ78_000823"
     CDS             complement(10757..11404)
                     /gene="purQ"
                     /locus_tag="SFZ78_000823"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG8211706.1"
                     /translation="MKVAIIRFLGTNCEFDTAYAFEKLGVKTQIIWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNGNAFLKNFKKDEIINLPIAHGEGNYYADEAILKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11406..11651)
                     /gene="purS"
                     /locus_tag="SFZ78_000824"
     CDS             complement(11406..11651)
                     /gene="purS"
                     /locus_tag="SFZ78_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG8211707.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(11660..12370)
                     /locus_tag="SFZ78_000825"
     CDS             complement(11660..12370)
                     /locus_tag="SFZ78_000825"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG8211708.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12372..13706)
                     /locus_tag="SFZ78_000826"
     CDS             complement(12372..13706)
                     /locus_tag="SFZ78_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG8211709.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISNLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDKATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGTTKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13833..14123
                     /locus_tag="SFZ78_000827"
     CDS             13833..14123
                     /locus_tag="SFZ78_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG8211710.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAIEENDIQSIKELNKAIDMFMK"
BASE COUNT         5062 a         2321 c         1877 g         4929 t
ORIGIN      
        1 tataaacaaa gctaatataa gcacaacaaa aaatacaaca atatataaaa ttttcttttt
       61 catacgcaac ttctttttga tatttatttt ggggattttt tattatctaa ctcagccttt
      121 aaaaagcaat tctgtggtat ttattcccca aggttcaatt tctcaaatta taacatattt
      181 aaagcaaaat aaatatcaga tgagtaatat tgataaatat attttatttt ttttaggaca
      241 ccctcaatca ggctggatca acataggtac aaaagattta aatagagctg aatttctaca
      301 taaactcact attgctaaag cagcacttca aaccattact cttatcccag gagaaacaag
      361 cgtaatcttt ctagaacaag cagccaaaca acttggactt gataaagata tacttttaaa
      421 agaatttcaa gctcaagctc cttatgatga aggagttttt ttaccagaaa cttataaaat
      481 cccgaaaggc attacagaaa atctactcat tcaaatgctt ttaaaccatg ctgaaatttc
      541 caataaaaaa acttctgaga aaatttttgg tgattataat ccaaaaaaat ggcaccaata
      601 tatcatcatc gcttctgtaa tacaaaaaga agctgctaat gacaatgaaa tgcctatagt
      661 tgcaagcgta atttacaatc gacttaaaaa aggtatgaaa cttcaaatgg atggaacttt
      721 aaattatgga atttattccc atgtaaaagt taccccacaa agaataagac aagataatag
      781 ctcttataat acctataaat ttacaggatt gcctaaagaa gcggtttgta atgtttcttt
      841 agctgctatt cgtgcagcta tttttccttt aaagacagat tatttatatt ttgtgcgtga
      901 taaaaatact ggagttcata tttttagcac aaatatagat gatcacaata aagccataaa
      961 tttacaaaaa ggaaaataat ttttgatatt tttatacaaa atagttaaat tggaacagta
     1021 tttgcttgtt aatattaaaa attataaaaa ggataaaaaa tgattaaccc atttaaatca
     1081 aaagaactag tcactggtgc tttagcgggt agaaatctaa gaaatcaact catcaatgcc
     1141 aatcttgcaa atgttgatac tcctttttat aaagcaagag atattgaatt tgaaacagct
     1201 ttggtaaatc gtgcaaatga aattttcaaa aaaaatgaca aaaaagaatt agaattggca
     1261 gtaaccgaag aagggcatca aaaaccttgg aaatttcctg atcctagtaa atctactatt
     1321 tacttaagag atggtcattt ggcaagaaat gatgcaaata ctgttgatct agatgtagaa
     1381 actacagaaa tgagtaaaaa tacagttatg ataacagctc ttgatggagt tttaagaaga
     1441 caaagcaata tctttagttc tatacttgat gcaagctcta aattaagtta aaggtaaatt
     1501 atggcatact taagtgattt tgatattagt ggttatggtt taagtgctca acgttttaga
     1561 atgaatgtta ttagctctaa tatagctaat gcaaacacta caagaacagc tgaaggtggg
     1621 ccttatagaa gacgcgaagt gatctttaaa gcaacagatt ttgataagct tttaaatgag
     1681 caaattaaca aagataataa ttttttaaaa tatgaaaatc ctttaaatga tccaagttcg
     1741 ccagaagaag ctaaacctgc tattcaaagt gttgtagtgg ataaagtggt cagagatgac
     1801 aaagattttc gtatgaagta tgatccaagc catcctgatg caaatgctga aggttatgta
     1861 gcgtatccaa atgtaaaccc tgttattgaa atggcagatt tgattgaagc tacaagagct
     1921 tatcaagcca atgtaagtgc ttttacaagt gcaaaaacta tagctcaaag tgcgattgat
     1981 ttattaagag gataataaaa aatgaacaat attaatgatt taagattaaa taataatatt
     2041 tcaaatacca acaaaagtca aaattccaca ggaattggtg atgaatttgc caagatgctt
     2101 aaaaatgaaa tcgatgattt aaataaagca caagaaagtg gagaagctgc aatgacagac
     2161 attgccacag gacaagtaaa agatttacat caagcagcta tagctatcac taaagctgaa
     2221 agcagcatga aatttatgct agaagtaaga aataaagcaa tcagtgctta taaagaaatc
     2281 acaagaactc aaatttaaac cctaatgcaa gaatataaaa aaaatagggt ttcaaaagtt
     2341 gcctttgcct actgcatggc acttttgttt atgattattt ttatcagctc tacttttttt
     2401 cttacatcaa aacgtcatat acctaacact gaaaaagatc aatacgctct tgctctaaga
     2461 ggatcgatta taaccaaaga taattttact atcacaagtt ctaaacaaat ttatcgtgct
     2521 gaaattgatc ttagaagcat taacaaagat aaatttgatc tatttttaaa gctttttcaa
     2581 atttatagtg ggataagtaa cgatcaagta gcagatatta aaaaaagaat gcaaaatcaa
     2641 aaaaaacgct cttataattt tgttctttta caaaacttag actccaagca agcaagctac
     2701 cttaaagatc ttgctaaaaa actttatata caaggttttt tcaaagcttt tacaaataac
     2761 tcaggaagag ttgaaacaag aggattaaat atcatcgaac atgaagaaga tagaatttac
     2821 atgtcaaaag attcttttac tcctattatc ggttatacta aaatgatatt agatccagaa
     2881 agtggaattt taaaaaatat aggagttaaa ggtttagaaa aatactacga tgcatgtcta
     2941 agccctgttc aaaatgaaaa aattcaagga cttaaagata taggtggaaa tattatttta
     3001 aatctaaatt cactacaaca aaaaaagatc aatggttgtg atttatattt aaatctttct
     3061 ttaaaactgc aaaaaagtat agagaaagct atagatcaaa gaaatgagga tttaaaagcc
     3121 aatgaaatca tcgttggggt aatggaaagt aaaacaggaa gaattttagc tctagcaagc
     3181 tcaaggcgtt atgacccaca aaatcgcgga aaggatctat cagttcttaa tgcaagcgct
     3241 atagaatacg gctatgaagc aggttctgtt atcaaacctt ttatctttac aacagcctta
     3301 agacttggta aaataaaaat ggatgaagtg attaatactt atggcggttc ttacaagcta
     3361 ggacgtttca ccatcaaaga cgatcacaaa atggacaaaa tgactatgga ggaagttata
     3421 agatattctt caaatatagg catgatacaa attgctaaaa ggcttaacaa tatagaaatc
     3481 gtatcaggac ttaaaatatt taaatttggc gaaaaaagtg gtattgatct accctatgaa
     3541 caaaaaggag aaattccaaa tcctaagcgc ttaagagata tagaaaaatc tgttttaagt
     3601 tatggttatg gacttaaaac aacctttata caactccttg cagcttataa tgttttcaac
     3661 aatgatgggt tttatatcac accacgttta gctgaaaaat tctatcaaaa tggacgcttt
     3721 acaaatcttg atgatgatgt aaaaaaagaa aaaattcttt ctagcgaagc cgctaaaacg
     3781 atgcaaaatg ttcttataaa tgttatagaa aaaggaacag gaaaaaaggc aattacacaa
     3841 ggtattattg caggaggtaa aacaggaacg gcaagaatag ccgaaagaca aggttacacc
     3901 tcaaatcgct acaatgcatc cttttttggt tttgcaaatg atttaaatca cgcctatacc
     3961 ataggagttc tcgtaagaca tcctactaaa ccttatagtt attatgctgc acaaagtgct
     4021 ttgcctatgt ttaaagatgt tgttgatatt ttaatcaatg aagaatttct aacgcctata
     4081 caagacaata accaaactag cacaaacaac tagtttgata tatctttaga aaatatcacc
     4141 tcaacagcac ctataagttc ttcagcaatc ttagcagcaa aagttgtatc attaagtatt
     4201 gaaattcctt cagctgttgt gatttttctt actgaaataa gatgttcaac attgctcaag
     4261 gttaaagtat cgatttcttt taaaatttct tttccttttt gaagattttt aataatcaaa
     4321 taaagctttt cacgatcttc aacaactcta agctcttcga tacttcttaa aagctctcct
     4381 aaattcgatc taattttatt gtactctaaa gccaaaaatt cattagaaga actagaatat
     4441 ttcttaatat ttgcttggat aatttttaaa tttttagttg tttcggctaa atttttagct
     4501 gccatcttaa aggtaaaaat tttatgattc tttgtttcat cgttaatata aacttgtgct
     4561 ttagttgaaa aatcgataat agcttcaaaa agaaccttta tcctagtttg atacaaatag
     4621 tccaaatcca catttttact aaaccacttt ttattttcta aaatttcttt aaaactttta
     4681 tcactttgta tatctttacg actaaaacct atagcatgag caacaattgc ataggtattg
     4741 ttataaagat gctcgctttc tttccttaaa gcttcgatgg ctgtgtcact aaacttaacc
     4801 aaactactat caagatataa aggcttgtct ttattcttat ctttaggagc ttttactatc
     4861 ttatttaaaa aaagaacaat ttgaggagta aagaatgaaa aaagcacaac accaattaaa
     4921 ttaaacaaag tgtgaaataa tgctactttc aaagctatat cttctatgtt taatacaatg
     4981 gataaaaaat taagaaaatg tataaaataa ggaaaaataa gcactattaa aaaagctata
     5041 ccaaaattaa aaatacaact tgcaaacgct aatttctttc cttcaatatt ggtacttaaa
     5101 gaagctaaaa cagccgttac aactcctcca acactagtac ctaaagttgc tgctaaggaa
     5161 ttttcaaact gatttgtcct gcaagtaaag cagcgacaat aatagccatt gtagctgtgc
     5221 ttgattgtat aactcctgta agcaaagcac ctaatcctaa aaaaacaaaa actcctttaa
     5281 aaccagcaaa atcaaaacga gaaagatcaa ttatatgttt aaaattttca aaaccacttt
     5341 taatataatc cacacccaaa aagaaaaatc ctataccaat aaaaatatta cccaaacctt
     5401 ttaaaacact atctttttga aagaaaaata atactccaat aatcaaaagt gggatagcta
     5461 gcattgaaat tttaatattt gtcaaaccaa caatcagcca agaacttgcc gtatttccta
     5521 aatttgctcc aaaaataatc cctatgcccg cacccaaaga aataagccct gcactcaaaa
     5581 aagaaatcgt aataatagaa actaaagttg aagattgcat aattaaagta cttaaagtac
     5641 caaaaagtat actttttatc tttgtatcgg ttgacttcgc taaaattttt tcaagcaaac
     5701 caccactaaa agctttaaaa cctataccta aattagtcat tccaataaga agtattgcca
     5761 ctcctgctaa aagattggca agctcgtcat aacgaattaa aataaaaatc agaactaaag
     5821 taaaaatact ccatgaaata aatttaaaat attttaaaga atttctttcc tcttgcaatg
     5881 cctaaccttt tagtttttca aattcattca tcagaaattc tcttaaattt tcggcttctt
     5941 cttcgccttt ttctagatac tcaagcaata aattttctaa ttcctttaaa aaagaaaaaa
     6001 gttcattttg ccagatacta tcgtttttat tgcttaaatt catggtttgt atgaaagtca
     6061 actctctgct taaatcccca agtttttcta aaaattcatc tttttgatca gaatttttta
     6121 atgctaaatt agtattttgg acattttctt taaattgtct gattttttca tcgattaaat
     6181 cgcaaaattt cggataaaca tccattttaa taggctctaa aagggtttgc tcgtctatat
     6241 ttaaagtaag ctttttaaca gcaaaataaa gagctaaaaa agacaaagct gctatgagta
     6301 aataaattcc tagcattaat aactcttaag ggctagcatt ccgccatcta aattgatgct
     6361 ttcaagtccc aatttttcag ctataaattc agctgcaacc atgcttctat ggccactacg
     6421 acaaataaaa gcaagttttt tactttcatc tcttttgctt tgaaattcat ctaaaaattt
     6481 agcatttaaa agcccttgat tatcatataa agccacacat tgcgcattag gtaaaatacc
     6541 ttcttcccat tctaaaggag tacgcacatc aaaaatttga tatgcgttta aatcttgctt
     6601 tgtccaaaga cttgcaggga tattttctat catgaaaaag ccttattgat aatttttgca
     6661 aggcttgcat taaattcagc aggattatcc actcccatac cttcgcttag ttttgccata
     6721 tttaaaacta gggttgctat atctgcacta aaactttcgt tgtttttaag acctgtaaaa
     6781 atagcgtgct ttggattgat ttctaaaata ggtttgaaat tttgttcttg acccatttgt
     6841 tttaagagtt gttgcatagc aaaatcaggt ttatttttat cgtaaactat acaacttggg
     6901 ctatctttca agcgactggt tagtcttaca tcttcaactt gatcttttag aagttcttta
     6961 aatttagcta caagtggagc aaaagtattt ttttcttcat cgcttagttc atttttatct
     7021 tctacttgat taatggctac aaatttcaaa ccttcaaatt ctagcatagg agttactaaa
     7081 gaatcaatct catcatccat gagtaaaact tctatatttt tttgcttata ttcttcaagt
     7141 aaaggagagg ttcttaataa actttcatta tttcctgcta tataaaaaat ttccttttgc
     7201 tcgccttgaa ggtcattttt atactcttct aaagagcgta aattttcacc tttggtgctt
     7261 ttataaagca tgagttttaa aagactgtct ttttctccgc caaaaccata aagtccttct
     7321 tttaatacct taccaaaggt tttaaagaaa gataagtatt tttctttatc attgttttta
     7381 agtttttcaa gttcacctaa aatcttttta acgctagctt ctttaacacc ttttaaaatt
     7441 tgattttctt gtaaaatttc acggcttaca ttaagtggta aatcttctac atcgataatc
     7501 ccacgcacaa aacgcaaata agttggtaaa agttctttat catcatcgct gataaataca
     7561 cgttttacat aaagttttaa gccgctttga taatccacac ggaataaatc aaaaggtgca
     7621 ttttgtggta tgaaaaataa ggaattgtat tctaattttc cttcgctttt agtgtgaaga
     7681 taaagtaaag gtttgtttga atcatgaaaa ttttgctcat aaaatctttc ataatcttct
     7741 gctttaaggc ttgatttttg cattctccat aaagcgttgg ctttattgat ttgagaaatt
     7801 ttaagttcag tttttccttc ttcttcgccc tctttagcag gagtaaattc ttctttttcc
     7861 atgaaaattg gaaattgaat atgattagaa tatttttcta taatgctttc gattttataa
     7921 gtattagcaa actcatcatc ttttaaatat aaagtaatgc ttgttccttg ttcttctttg
     7981 cttgcgtcat taatctcata accatttgca tcggaactcc aaagataagc tttatcatct
     8041 aaagcttttt tacttaaaac ttcgattttg ctagccacca taaaagcaga ataaaaacct
     8101 actccaaatt gtcctatgag ttgagaatct tttttagcat caccgctcaa attttctaaa
     8161 aagcttttag tgccgctttt tgctatggtt ccaagattgt tgataagatc atctttatcc
     8221 atacctatac cattatcact aatacttaaa gtttttttat ctttatcaat tttgatttca
     8281 attttaggtt caaattttaa gcttttatat ttatcatcac ttacgcttaa aaaattaagc
     8341 ttatctaaag catcgcttgc atttgaaata agttctctta aaaaaatttc tttattagaa
     8401 tataaagaat gtatcataag ctgtaaaagc tgattgactt cggtttgaaa ttgcatttta
     8461 acttcctttg taatttttta aagtggtatt ttagcaaaaa atacaaattc taaagtaaat
     8521 ttaaagattt atttgaaaat tataaaacca agccatgcgg caaataagca aagaaagaca
     8581 tttaagataa tatttaacgc aaaatgagga taatttccac tttgcaaaag aagtaaattt
     8641 tgataagaaa aagtagaaaa agttgtaaaa gctcctaaaa aacctgtact tataaagctt
     8701 ttaagtaaag gagataaaca tttattttgt gcataagaaa acaaaagtcc tatgataaaa
     8761 gaacccaaaa cattaacaaa aagagttcca aggctgatag aataaggaaa aaatttattc
     8821 actaaattaa tagaaaacat tcttaagatt gctcctataa atcccccaaa accaacaact
     8881 aaaagggtat ttagcaaagc ttagctcttt cttgatcgag taattcttgc attttttttc
     8941 tagtgttttc aagccatttt tcatcatttg tatcgactaa atccatacaa atgattttaa
     9001 gcactccgct gcttgcacta aaactttttg tgtctaaaat ttttgcagaa tccacaatta
     9061 aaatgggttg aactttaaga tttaattttt cacttaaaat ttttgctcca ctttgaaatt
     9121 taagcatttt ttcattttta gatctagttc cttctggaaa aatagccaaa accctatctt
     9181 cactaattct ttcttttgct tcttttaaaa ctcgtaccaa atcacgcgga ttttttctat
     9241 ctatacaaag aagttttggt tttttcatag caactttgaa aataggaatt tctcctaatt
     9301 cttttttggc aatccagcat aaatttttag gatataattc ttctaaagcg atgatatcta
     9361 aagcactttg atgattcatt aaaatcatct gagcttgcgg attaaaagtg ccaatgattt
     9421 cttgtttata agagatagta tatctttgaa atttagccca aattttgcgg attttccaaa
     9481 gtgtgttttg agattttgta aagcaaaaac aaaaaatcac caaagcaaca cttaaaacaa
     9541 aaaaaatcca aaaataaaga gctttaattt ttttgtaaat catctttatt aacccaacct
     9601 atttttccat cagaaaacag tactttaata taattttgtc ttttgcccaa aacttctact
     9661 ttttcatctg catttgccgt ataaaaataa gttgaaggct ctgtaggtaa gattttagcc
     9721 ctagaaccag ccttgataat tgcattttga gtattggtat ctacaagaaa actaagtaca
     9781 aaacaaacaa ctgccaaagc cagaataatg taattttttc tccatacaaa taaagctcca
     9841 aataaaaccg ctaaaaacca taaggtatat tgtttataaa tatttaagtc tttatttaca
     9901 ggatttaaat cactctgagt gctgatctca tcgtcactaa tttttagttt taaatttata
     9961 ttttcaagct ttttactgtc cttattgaaa tacgaaaatt caaaatttgt tttacttaat
    10021 ggcaaaatag cataataaaa agcactagaa gcattaaagt ccccttttaa attttcaata
    10081 ccttgctttt gaattccttc tataaaaaag cttttaagat ttgtattggt tgcgtttagt
    10141 tctaccatca taatgatatt agcatcatca aaataactcg ctttaacttt tttaatttcc
    10201 aaagaacttg ccacaaggtg tgaaaaatct ttattggata aagtattttc aaatttgata
    10261 ggattaagat tgatatcagc ctcttgaaaa gcttcattat ttctaagaag tttgatagaa
    10321 attttactca aactagcatt tgaatttttg gcttcaaacc ataaagttgt tttatattcg
    10381 ttattgataa attcccattt tgcatctgga tttaaaaaag ataagttagt tttttctacg
    10441 cttatgttaa aatcaaattt tgtattttcc gtagtgcgag catagatcgt aataggaaaa
    10501 acttctccaa catataccct acttggatat tcattatttg taagaaccaa actcccttta
    10561 gctacaaaag gatcatctac attgctttca aagtcattgt tttcatcact tagcggaata
    10621 ttttgataaa ttttttgttc ttcttggggt aatttttgta attctttttg catattttca
    10681 tcttggccgc taaatacaga aatttcaccc ctgccaaaca atacaacaac actaaaaatt
    10741 aaagttaata aaattttcaa aataaaaagc ctttaagcat tttcaaacct atatcattac
    10801 ctaggacttt ttcacaagca cgctcaggat gtggcatgag tccaaagatt tttttgtttt
    10861 catcacaaat tcctgcgata tcaaatacag aaccatttgg atttggctcg tattttaaag
    10921 taataagatc tttatcttgc aattctttta aaatagcctc atcagcgtaa taatttccct
    10981 ctccatgggc aattggtaaa ttaataattt catctttttt gaaatttttc aaaaaggcat
    11041 taccattaga aactactctt aaattttggt tttttgagat aaaactaaga ttgttattat
    11101 gcttcattgc accttttaaa agaccgcttt caagtaaaat ttgaaaacca ttacaaatac
    11161 ctaagatata tcctcccttt tttgcatgat taaaaacacc ttgcatagca ggagcaagtt
    11221 ttgcaatagc tgcacatctt agataatctc cataagaaaa tccgcctggc aaaacaacta
    11281 aatctgcatc aaattctttt tcttcatgcc aaataatctg cgtttttact ccaagttttt
    11341 caaaggcata agctgtatca aattcacaat ttgtccctag aaatctaata atagcaactt
    11401 tcattttact ctttctcaat tataagctca taatcttcaa tgacgctatt taccaacaac
    11461 tcttcacaca ttttttttac ttgttctttg gctaattttt catctttctc atcaagagaa
    11521 attttgattt gttttgctat ttttacttct ttaacactat taaaatttaa agaatgcaaa
    11581 gctttttcca ccgctttgcc ttgtggatct aaaaccccat tttttaaaga aatatttaca
    11641 ataacttcca tatttttcct taatttaata ttctttttaa aacttcttca taagccattt
    11701 ttacattacc tagatcttga cgaaatctat ctttgtccaa tttttcatta ctaaatttat
    11761 cccaaaatct acaactatca gggcttattt catcggctaa aacaagttca ttatctttag
    11821 ttaaacccag ttcgatttta aagtcaatca gccttaaatt tttattgtca aaaaatggag
    11881 ttaaaataga gttaatcttt ctagccatat ttttaatttc actaatttga gcttcatttt
    11941 gcactaaatt taaaatcaaa caatgctcat cattgataaa aggatcgcct aaggcatcat
    12001 ctttaagaca aaattccacc aaagcaaaag gtagcacagt gccatcttta atgcccagtc
    12061 tttttgtaag agaacctgtt gcaacattgc gtactataac ttcaatagga acaattttac
    12121 attttttaac cacttgttct gtatcgctta tagtttctac caaatgggtt ttaatcccat
    12181 ttttttcgag caaatgaaaa atttcagtac tgattttaca gtttaatgca ccttttccac
    12241 tttcattgcc tcttttttct gcattaaaag cagttaaatc atctttaaac tcactaatta
    12301 gtaaattttc atcatcagtt ttgaaaagtt ttttaccttt tccttcgtaa agcatttctt
    12361 tttttgtcat tttattgtcc ttgtttgata tttaaaattt taatagtatc aatagctgat
    12421 tttaactgcg cgtcatcatt gatttgtttt tgactgatta gatttttatt gtctttattt
    12481 tcttgtttat cttctttttt atttttatct attttttcaa gctcgctttc taaatgttgt
    12541 tttaagtcgc tttcttttat agaaaaacca tcttcttgag tatttacttt acctggaaaa
    12601 acttcaatat caggttttac acccactgct tgaatagtac gcccgcttgg aagataatat
    12661 cttgcgatag taagccttaa agcttcagtt ttattaatag gtatgatttg ctgaacacta
    12721 ccttttccaa aagtattttc acccacaata acaccgcgtt taagatcttg taaagctcca
    12781 cttacgattt cacttgcact agcacttcca ccatttacaa gcacaaccaa agaagcatta
    12841 gaaattttgt ttttaggatc ggctttatat tcttgatttt cacttgcgat gcgtcctttt
    12901 tgagaaacaa taacaccttt atctacaaat aaatttacaa gtcctatggc ttgatttaaa
    12961 agtccaccag gattatttct aagatctaaa ataactcctt taacattagg atatttttta
    13021 agttctttac ttgccacatc tacaacattt ttatcaaaat ttgtaaccct aagataaaga
    13081 atgttttcat tttctatcat ttttgcataa acactttcta tcttaataat ttctcttgta
    13141 agtgtaacat caaaaggttt tgttgtacct tttctaaaaa tggttaaagt gatttgagtt
    13201 tttggcttac cacgcatttt atctacagca tcattgagat taattcctaa agtggcctta
    13261 tcattaattt ttaaaataat atctcctgat tttatccctg ctttatctgc tggtgttcct
    13321 tctataggag aaacaactgt taaagcgcca tctttcatac ctacggttat accaaggcca
    13381 ccaaattcac cattggtttg aattttcata tcattaaaat ccttttcatt taaaaaagaa
    13441 gaatgcgcat caagattgct taaaagtcct gataaagatt tatccaccaa attgctgata
    13501 ttttgatcat ccacatagta ttgctctact atagcaagag tttttgtaag cttatctaaa
    13561 gcttctaggc gtttttgaac ctgctcttct ttttgatcaa ctttagcttg taaatgactt
    13621 gttaaaaata gacataaaat aaaagtagtg gcaaagcctg caagacccgc aaaaaatcgt
    13681 tttgttttca aaataagctc catcattgag ttttagttta attagtttaa agagtaaatt
    13741 ttaataaaaa ttgcttaaaa cttcgtaaat aaatttaaat tcttaaaaat atgttaaaat
    13801 agactaaaaa ttccaaaaag aaagttaata caatgtgcca agaaaaacat actcatacac
    13861 attctcaaaa acatcttaaa gcagtttgca atcgtctaag tagaaccata gggcatttaa
    13921 gcgctattaa aagaatggtt gaaaatgaca aagactgtag tgaaatttta atccagcttg
    13981 ctgccgtaaa agccgaagtt aacaatactg caaaagtagt tttaaaagaa catttagctc
    14041 attgtatggt acatgctata gaagaaaatg atattcaaag tataaaagaa ctaaacaagg
    14101 ctatagatat gtttatgaaa taatctaaaa ttagtcattt gtcctattat ttaaaaaatt
    14161 ttactcaatt aacttgacat tatatgact
//
LOCUS       DARGEM010000037        13896 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.037, whole genome shotgun sequence.
ACCESSION   DARGEM010000037 DARGEM010000000
VERSION     DARGEM010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13896
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.037"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            209..493
                     /gene="gatC"
                     /locus_tag="SFZ78_000828"
     CDS             209..493
                     /gene="gatC"
                     /locus_tag="SFZ78_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG8211711.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            561..1124
                     /locus_tag="SFZ78_000829"
     CDS             561..1124
                     /locus_tag="SFZ78_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG8211712.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSRLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            1126..1599
                     /locus_tag="SFZ78_000830"
     CDS             1126..1599
                     /locus_tag="SFZ78_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG8211713.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDIHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1600..3105
                     /gene="lysS"
                     /locus_tag="SFZ78_000831"
     CDS             1600..3105
                     /gene="lysS"
                     /locus_tag="SFZ78_000831"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG8211714.1"
                     /translation="MFDNILEQQRIEKAKELKKLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3102..4346
                     /locus_tag="SFZ78_000832"
     CDS             3102..4346
                     /locus_tag="SFZ78_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG8211715.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4343..4888
                     /locus_tag="SFZ78_000833"
     CDS             4343..4888
                     /locus_tag="SFZ78_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG8211716.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4902..5738
                     /locus_tag="SFZ78_000834"
     CDS             4902..5738
                     /locus_tag="SFZ78_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG8211717.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSLNNNDSTNFAMPDQEVPAEPTATTSENTTPQASAPKQEVKQTAKPKEE
                     AKKQIAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5735..6523
                     /locus_tag="SFZ78_000835"
     CDS             5735..6523
                     /locus_tag="SFZ78_000835"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG8211718.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6598..7497)
                     /locus_tag="SFZ78_000836"
     CDS             complement(6598..7497)
                     /locus_tag="SFZ78_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEG8211719.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7587..8402
                     /locus_tag="SFZ78_000837"
     CDS             7587..8402
                     /locus_tag="SFZ78_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG8211720.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8472..9254
                     /locus_tag="SFZ78_000838"
     CDS             8472..9254
                     /locus_tag="SFZ78_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG8211721.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNAKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9238..11229
                     /locus_tag="SFZ78_000839"
     CDS             9238..11229
                     /locus_tag="SFZ78_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG8211722.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLEG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11222..11947
                     /locus_tag="SFZ78_000840"
     CDS             11222..11947
                     /locus_tag="SFZ78_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG8211723.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRKQLVAQRNK"
     gene            11975..>13896
                     /locus_tag="SFZ78_000841"
     CDS             11975..>13896
                     /locus_tag="SFZ78_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8211724.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEIFDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKVKPLIQNIALCELKDFSSAKNKISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSVAKLK
                     NIDSGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLYELETN"
BASE COUNT         4908 a         1627 c         2650 g         4711 t
ORIGIN      
        1 tctataaatt gttcttctgt gttaagttca tttttaacag cttttaaatt atcttttagt
       61 cccaaaattt atccttgaaa aaatattttt atttttgtat agaaaaatta tgatattgta
      121 tcatataaat tgcaaaatat cctaaacaat ttaaagcttt ttatgatata attttcaaaa
      181 ttttaacttt tttattaagg tttaagaaat gcaaatagat gagaaattat taagcaagct
      241 tgaaaaatta agtgctttac aaataacaaa aaacagaaat gaaactattg cacagttaag
      301 tgaaattgtg aattttgttg aaaaattaaa cgaacttgat ttagattccc aagagattac
      361 tgtgagtact ataaaaggtg gagctccttt gaggattgat gagataagaa atagcaatgt
      421 tattgatgag gttttagatt gtgctccaaa aaaacaagaa catttttttg ttgttcctaa
      481 aatcatagaa tgattaactt agcatttagt gcttatttgt agaataaatt taaaacaaaa
      541 aaaatcagag agtgattgaa atgaattttt attggtttga tgcttttatt ttaggattta
      601 ccttgctttt agggcttaag ggtattatca atggtttgat aaaagaaatt tttggacttt
      661 tgggtattat tggtggtgtt tttattgctt caaaatatgc aactcaagca gctgaattta
      721 tacaaagtac tttttataag atagaaaatc aaagcttagc tggatttgct ggatttttag
      781 ccatattaat tattttttgg atagtttgtt tattggtggg taattttctt tctaggttga
      841 ttaaattaag tggcctaggt tttttagatc gtattggtgg ctttatattt ggtggagcaa
      901 aaatcttttt aatttttgca attttagttt tttgtgtggc aagaattgat tttttaaatg
      961 ataaattaga taattttgct aaaaatagct atactttaaa tttacttaaa gaaacgggat
     1021 cttttattat gaatcaacct ttaacagaaa atagtctaga tcatgctagt gaaaagttgc
     1081 aagatattgt aagtgattta aacaatactc aaaaagggga gtgatatgct gatagaaaat
     1141 gtggaatatg atgttttact tgagagattt aaaaaaatat taagacaagg cggacttaaa
     1201 tataccaagc aaagagaagt acttttaaaa actctttatc acagtgatat tcattacaca
     1261 cccgaaagtt tatatatgga aatcaaacaa gctgaacctg atttaaatgt aggaattgca
     1321 actgtttatc gtactttaaa tttacttgaa gaagcagaaa tggtaacttc catttctttt
     1381 ggttcagcag gtaaaaaata tgagcttgct aataaacctc accatgatca tatgatatgt
     1441 aaaaattgcg gaaaaattat agagtttgaa aatcctatta tagaaagaca gcaagccttg
     1501 attgcaaaag aacatggttt taaacttaca gggcatttga tgcagcttta tggtgtttgt
     1561 ggtgattgta ataatcaaaa agcaaaggta aaaatataaa tgtttgataa tattttagag
     1621 cagcaaagaa tagaaaaagc taaagagtta aaaaaattag ggattaatcc ttatcctcat
     1681 tttttagaaa aggaaatgtc tttaaagact tttaaggata aattttctta tattttagag
     1741 caagttgaaa aaagagatga aagtgtcaat gctgttgttg caggacgttt gaaacttttg
     1801 cgtatagctg ggaaatcaat ttttgcaaac attgaagatg aggatacaaa tttacaaatt
     1861 tattttagta aagatagcgt aggcgaagag ctttatacga ttttaaaaaa gaatttagag
     1921 gtgggtgata ttgttttggt taaaggtttt ccttttgtaa ctaaaacagg tgaatttagt
     1981 ttgcatgcaa gcgaagtaaa actcgctaca aaagctattg ttcctttacc tgaaaaatat
     2041 catggattaa cagatattga gcaaagatat cgtaaacgtt atgttgatat gataatgaat
     2101 gtcgaagtta gaaaagattt tttagtgcgt tctaaagtgg tgagtttaat ccgtcatttt
     2161 tttgaaaata aaggcttttt agaagtagaa actcctatga tgcatccgat tgcaggtgga
     2221 gcaaacgcta agccttttgt aacttttcat aattctttag gcgtagaaag atttttaaga
     2281 attgctccag aactttatct taaaagactt atagtaggtg gttttgaggc ggtttttgaa
     2341 atcaatcgtt gttttagaaa cgaaggtatg gatttaactc ataatcccga atttacaact
     2401 atagaatttt attgggccta tcataattat aaagatttaa tggatttaac cgaagaactt
     2461 tttgctttac ttttggataa acttaattta ggaaaaacaa tagaatttga tggaaaaatg
     2521 ataaattttt ccaaaccttt tgaaagaata acctataaag acgcactttg taagtatggt
     2581 ggtttagata gggatttaat cgaagataag gaaaaaattc ttactaaatt aaaagcagat
     2641 ggttttgaag cgaatgaaaa gcttgaactt ggacatttgc aagctgaact ttttgacaat
     2701 tatgtggaag aaaaattgat caatcctact tttgtgattg attttcctat ttccataagt
     2761 cctttatcaa gacgtagcga tgaggattct cagattgctg agagatttga gttgtttatt
     2821 tgcggaagag aattggcaaa tggttttaat gagcttaatg atcctcttga tcaatatgag
     2881 agatttttaa aacaaattga agctaaaaat gcaggcgatg aagaggcttg tgaaatggat
     2941 gaagattttg taaatgcttt gggttatgga atgcctccaa cggcagggca gggcataggt
     3001 atagatagac ttgttatgct tttgacaaat aaaaaatcca ttcgtgatgt gatattgttt
     3061 cctgcaatgc gtccattaaa atcagaacta aaggagaaag aatgagttta gaaatgtttg
     3121 ataaagaaat ttttgattta acaaacaaag agttagagcg tcaatgcgaa ggtcttgaaa
     3181 tgatagcgag tgaaaatttc actttacctg aagtaatgga agttatggga agtatcttga
     3241 cgaacaaata cgcagaaggt tatccaggta aaagatatta tggtggttgt gaatttgttg
     3301 atgagattga aactctagct attgaaagat gtaaaaaact ttttaattgt aaatttgcta
     3361 atgttcagcc taattcaggt tctcaagcta atcaaggtgt ttatgcggct ttgattaatc
     3421 caggtgataa aattttagga atggatttaa gtcatggtgg acatttaact catggtgcaa
     3481 aagtaagttc ttcgggtaaa atgtacgaaa gttgttttta cggcgtagaa cttgatggaa
     3541 gaattgatta tgaaaaagta agagaaattg ctaaaaaaga aaagccaaaa ttaatagttt
     3601 gtggagctag tgcttatgca agagtgattg attttgctaa atttagagaa atcgctgatg
     3661 aagtaggcgc ctatcttttt gctgatatag cacatattgc aggtcttgtt gtagcaggcg
     3721 aacatccaag tccttttcca cacgctcatg tagtaagttc aactacgcat aaaactttgc
     3781 gtggcccaag aggtggtatt attatgacaa atgatgaaga gcttgctaaa aaaattaatt
     3841 ctgccatttt tccaggtatt caaggtggtc ctttgatgca tgtaattgct gcaaaagcag
     3901 taggatttaa atttaatctt agcgatgagt ggaaagttta tgcaaaacaa gtaagaacca
     3961 atgctcaagt tttagctaat gttttaatgg atagaaaatt taaacttgtt agcgatggaa
     4021 cggataatca ccttgtttta atgagttttt tagatcgtga atttagtgga aaagatgcag
     4081 atttagctct tggaaatgca ggtattactg caaataaaaa taccgttcca ggagagatta
     4141 gaagtccttt tatcacaagt ggattaagac ttggaactcc agcccttact gccagaggtt
     4201 ttaaagaaaa agaaatggaa attgtgtcaa attatattgc agatatttta gatgatatta
     4261 ataatgaaaa attacaagag aatattaaac aagaattaaa aaaacttgca agtaatttta
     4321 ttatttatga aagggctatg ttttgatttc accaatggat atgtcgctaa ttaaaataat
     4381 tggcgatcat tattatataa gacgcgataa aattgtaaat aaaattacac atagaggtcg
     4441 cttatttttt gataaatttg aaagagttga tgctccttta aatttaaatg tcatgagaga
     4501 acacgctgct aaaaaaattg ttgtcgctca tgatttaata acaaaagata ataaagtaga
     4561 aaatattgtc tttgattata atggttttaa tgctgaaaga ttttatcacc gtgcacaact
     4621 tattttaaga gaagaaggtt ttataaattt cacagcctat aagactaaaa ctccaggaca
     4681 tttacatctt tatattcaca aaggacacac ggcgttaaac gaaggttatt ctttagcgtc
     4741 taaactttca atgatgtttg caagtaaaat gccagtagaa tggaaggtgt ttcctagcat
     4801 ggatgtacct agggaattta atattttaat attgccttat gaggtttatc aaaaagaacg
     4861 aggaagttct tggtctaagc atatgtaaga aaggacaaat tatggaaaat caaaaaaatg
     4921 aatttgatga tattatttta gaaaaaagta ataaaagtga aaaagtaaaa aaaattcttt
     4981 tacgagttat tgctttagtt attttgtttt tagctatcat gatagttatg aagcttatta
     5041 atggtagtgg tgatgaaaat acgcaaaatc aaagtgtatt gccaagtgaa cctatagcaa
     5101 ctcaagacaa taacaatgat acttcttttg aaagtatgcc aattacagat aatacttcag
     5161 cagaagatca atttgaggca ttaagaaaac aatttcaaga tgaacaaaat acaactcaaa
     5221 atacaacaac ctctagttta aataacaatg atagcacaaa ttttgctatg cctgatcaag
     5281 aagttccagc agaaccaaca gcaactactt cagaaaatac cactccacaa gcaagtgctc
     5341 ctaaacaaga agtaaaacaa actgcaaaac ctaaagaaga agcaaaaaaa caaatagctg
     5401 taaaaaaaga aaaagaaagt gcaaaacaaa cccctaaaaa agaacaaaat gcaaatgatt
     5461 tatttaaaaa tgttgatgct aaacctgtac atccaagtgg tttggcatcg ggtatttatg
     5521 tgcaaatttt ctcagtaagt aatttggatc aaaaatcaaa agaacttgct tctgtaaagc
     5581 aaaaaggtta tgattataaa ctttataaaa ctacagttgg aggtaaagaa attaccaagg
     5641 ttttaatagg accatttgaa aaggcagata ttgcagcaga acttgctaaa atccgtaagg
     5701 atattgcaaa agatgctttt tcttttactt taaaatgaaa tttttagcag ttataggcga
     5761 tcctatttct cactctaaat cgcctagaat gcataataat gctattaaag ccttagggct
     5821 tgatagcatt tatacacgct atcatttaag aaatgctaac tgtttaagag aagatttttt
     5881 taaattagga cttagtggag ctaatattac tttgcctttt aaggaaaaag ctttagatat
     5941 tgctgatgtg aaggatgatt ttgctagaaa tattggctca gcaaatactt tatgcttaaa
     6001 agaagataaa atttacgctt ataatactga tgctttaggt tttttagaag ctattaagga
     6061 ttttgataat ataaaaaaag ctttgatttt gggtgctgga ggtacagctt tggcgcttgc
     6121 ttatgcatta aaacaaaaag gcgtagaagt gtatatagct aatcgtagta aagaaagatt
     6181 taaagatttt ttagcttatc caacttatct ttataaaaac ttgcaagatt ttgactttga
     6241 tttggttata aattcaactt ctgctggatt aaaagatgaa aatttacctt gtgatagaga
     6301 gcttttagat agaattttac ctaaagctaa atttgctttt gaggtaattt atggcagaga
     6361 aacacctttt tatagattgt gtaaagagta tcatttaaaa attaaagatg gacttgatat
     6421 gcttttatgg caaggagttt ttgcttttga actttttttt gaaatacaag ataaaagaga
     6481 gatgataaaa aatgcaatgc aacaggcatt gattttaaag tagaatgata gttatttttc
     6541 ttgtataaga aaatcttatt ttttgtgtga gaaagtttaa ttttcccaca agttttatca
     6601 ttcaaatatt tctaccccat cttgattttt actttgatta ttttgatttg ttgaagatgg
     6661 atttgtagga atattttgtg taggcgtgtt ttcaattgta ttattttgat tagaatttgt
     6721 ttgaggtaag ctttcttcaa aggtagcatc gccatcaaaa ctattaaaac cactgtttgt
     6781 attaggtata gttttgccta tgtctgttgc ttttggtaga ttgttataaa gtgtatttaa
     6841 tgtattttta taaaaagcta aaaaactttt atcaatttca aaagcaggtt gctctaaacc
     6901 tttattgagt tgagttggta cggtagagat agtagtttta aacatattaa ctccatcatc
     6961 atttttaata ggatagttaa gcgcaactaa agaatccagt ttggtgctac ttgaaagatt
     7021 ggttgaattt tgtggattgt gtgcatctat aaaatctatt ttacctttaa aatttatacc
     7081 taaattggat tttacataat ctccactcat aaaattgctt gttttttgtg catttttttc
     7141 ttctgtataa atactgattg aacttttaag agtgtagtct ggattagtag taactatttt
     7201 atagcctttt agttgagcga tggttttgat ctgctcttct aaattttgtt ttaaaagatc
     7261 aatttctttt tctatgcgaa ttttaagcac tgaattttca aaataatcag aataattgtt
     7321 attttgttct atattaatag gctcaagagc aatgcttact ccagaatcaa taggttcaac
     7381 ctttgttgga acttggggtt taaaatttgg catagaaaca ttgacaaaat tactgcttgt
     7441 acccccacaa gctgctaaaa ttaacatact actagcaagt aaaatatatt ttttcatttt
     7501 ttacctttat ttaatgtgtt tgtgttaatt atagcaagtt aaagtttttt tgttatattt
     7561 ttataaaaga aaattaggaa agatatatgg aattttggca gcatatttat tcaaatttta
     7621 atgttatagc ttttagcatc tttggtttaa aggtgcattg gtatggcatt atgtatgtta
     7681 tagctttgct tttggctttg cttttggcta aattttttgt aagaaaattt caactagaca
     7741 ttaatgaaaa acatttggat agttatttta tatgggttga aataggggtt attttaggtg
     7801 caaggcttgg atatattttg atttatgatg caaatactat gtattatatt actcatcctt
     7861 ggcaaatttt taatccttat attaatggtg aatttgtagg tattcgaggt atgagttatc
     7921 atggagcaat tataggattt ttgatagcta ctttattgtt ttgcaaaaaa tataaaacaa
     7981 atccttggat ttttcttgat ttggtcgctt taagtgttcc attggcttat gtttttggtc
     8041 gtataggaaa ttttttaaat caagagcttt ttggtcgcat tacaaatgtg ccttggggaa
     8101 tttatgttga tggagtattg cgtcatccat cgcaacttta tgaagcattt ttagaaggta
     8161 ttgttgtttt tattatagtt tatttagcaa gatttaagca aagttttcaa ggggaattga
     8221 ttcttgttta tgctggtgct tattcattgg caagatttat atgtgaattt tatcgcgagc
     8281 ctgattttgg tataggtttt gttttatggg gtatgagtat ggggcaaatt ttaagtttta
     8341 taatgtttat aacagctttg ttagtttata tttgtataaa gtttaaaaaa gtaaatattt
     8401 aatctatctt aaagactttt gtaatataat gaaatggatt ttttttaatt tctttttaca
     8461 aaggagtaaa gatgcgtgag cttatcgaag gttatttggg taagagcatt gagggcaaaa
     8521 aaagtaaaat gcctgcgaaa ttagacttta tccaaagtgc ttcagggctt tttttaggtc
     8581 tttttatgtg ggtgcatatg ctttttgttt ctacaatttt agtcagtgag gattttttta
     8641 attctgtggt ccatttttta gaattaaaat ttgtttatga taatcctgtt atgagttatc
     8701 ttacttcatt tttagccgcc tgtgttttag tggttttttt cgttcatgct ttacttgcaa
     8761 tgagaaaatt tcctattaat tatcgccagt atcaaatact aagaacacac agtaaaaaaa
     8821 tgaatcacag cgatacttcg ttatggtggg ttcaagcttt tacaggtttt attatgtttt
     8881 tcttaggttc tgctcatctt atttttattg taaccaatgc agataaaatt agtggtgata
     8941 tgtcaggaga tagggttgta agtcatttta tgtggctttt ttatgctgtt cttttagtgt
     9001 gtgttgagct tcacggaagt ataggtcttt acagactttg tgttaaatgg ggttggtttg
     9061 aaggaaaaaa tgcaaaagaa agtcgtaaaa agcttaaaac tgctaaatgg ataatcagca
     9121 ttttcttcct agttttaggt gtattaagtc ttgcagcatt tataaaaata ggttatgaaa
     9181 actaccaaaa tcaaacccaa actactgcga tgataaaaaa ctacaatgga gcaaattatg
     9241 aatatacaat atagtgatgc tttagtaata ggcggaggat tagcaggtct tagagcggct
     9301 attgaagtag caaagagtgg ccaaagtgta acacttttaa gtatttgtcc agtgaagcgt
     9361 tctcactctg cagcggtgca aggaggtatg caggcaagtt tagcaaatgg ggcaaaaggt
     9421 gagggtgata atgaagatct tcactttgca gatacagtaa agggaagtga ttggggctgt
     9481 gatcaagaag tagcaagaat gtttgctcaa actgcaccaa aagcagtgcg tgaacttgcg
     9541 gcttggggtg tgccttggac tagagttact aaaggtccaa gaactgttgt aatcaatgca
     9601 caaaaaactg tgattgaaga aaaagaagaa gcgcacgggc ttattaatgc tagagatttt
     9661 ggtggaacta aaaaatggag aacttgctat atcgcagatg caacagggca ttgtatgctt
     9721 tatggtgtag caaatgaagc tattaaacat caagtaaaaa tcattgatag aatggaagca
     9781 gtaagaatta tccatgatgg taaaaaatgc ttaggtgtga tcgctagaga tttaactaat
     9841 ggacaactca ttgcttatat tgcaagagga accatgatag caacaggggg ctatggtaga
     9901 atttataaac aaactacaaa tgcggtaatt tgcgaaggaa cgggtgcagc catcgctctt
     9961 gaaacagggc tttgcagact ttcaaatatg gaagcagtgc aatttcatcc aactcctatt
    10021 gtaccaagcg gtattttgct tactgaaggt tgtcgtggcg atggcggaat tttacgtgac
    10081 gtggatggat atcgttttat gcctgattat gaaccagaga aaaaagaact tgcaagccgt
    10141 gatgtggtaa gtcgtagaat gatggaacat attcgtaaag gcaaaggtgt aaaaagccct
    10201 tatggggatc atttatggct tgatatttct atattgggtc gtgctcatgt ggaaaaaaat
    10261 ctccgcgatg tacaagatat ttgcaaaact ttcaatggta ttgatccagc agatgaaggt
    10321 ccaaaaggtt gggcgccagt tcttccaatg cagcattatt ctatgggtgg aattagaact
    10381 aaaccaacag gtgaaagtca atggctagaa ggactttttg cttgtggaga agcagcttgc
    10441 tgggatatgc acggatttaa tcgtttaggt ggaaattcat gtgctgaaac tgttgtagca
    10501 ggtatgatag tgggagatta ttttgcagat tattgtaaaa ataatggtga agtaattgac
    10561 acaaatgtag taaaagactt cttaactaaa gagtatcaat atttaaaatc tttagtagat
    10621 aaagaaggta aacataatgt ttttgaaatc aaaaatagaa tgaaagaaat catgtgggat
    10681 aaggtagcta tctttagaac aggtgaaggt ttgaaagaag cagtagatga acttgaaaaa
    10741 ctttataaag attctcaaga tgttaaagtg cattgtaaag agcttgattg tgcaaatcca
    10801 gagcttgaag aagcgtatag agtaccaaga atgttaaaaa tagcactttg tgtagcttat
    10861 ggagcgcttt taagaacaga aagtcgtggg gcgcattata gggaagatta tccaaaaaga
    10921 gatgatttaa attggatgaa aagaaccaat actttttggg tagaaggcga aacattacca
    10981 cgcatagaat atgaagagct tgatattatg aaaatggaaa ttccaccagc attccgtgga
    11041 tatggagcta aaggaaatat tatagaaaat cctttaagtg aaaaacgcca agctgaagtg
    11101 gatgcaatac gtgaaaaaat ggaagctgaa ggcaaaggtc gttatgaaat tcaaaacgct
    11161 ttaatgcctt atgaattaca agctaaatat aaagcaccaa accaaagaat aggagttgat
    11221 tatgagtaga aaattgacaa taaaggcatt taaatataat cctttaagca aaatttctaa
    11281 accacatttt gtgacttatg agcttgaaga aactcctttt atgacggttt ttgtatgttt
    11341 gactttgatc cgtgaaaaaa tggatgcgga tctgagtttt gactttgttt gtcgtgcagg
    11401 gatttgcgga tcttgtgcaa tgatgattaa tggagtgcca aaacttgctt gtaaaacttt
    11461 aactaaagat tatcctgatg gagtgataga gcttatgcct atgcctgcat ttaggcatat
    11521 taaagattta agcgtgaata caggcgagtg gtttgaagac atgtgtaagc gtgttgaaag
    11581 ctgggtgcat aatgaaaaag aaactgatat ttctaaactt gaagaacgca ttgagccaga
    11641 agttgcggat gaaacttttg aacttgatcg ttgtatagag tgtggaattt gtgtagcttc
    11701 ttgtgcaact aaacttatgc gcccaaattt catagctgct acaggacttt taagaacagc
    11761 tagatattta caagatccgc atgaccatag aagtgtggaa gatttttatg aattagtagg
    11821 cgatgatgat ggtgtttttg gttgtatgtc attgcttgct tgtgaagata attgccctaa
    11881 agaattacct ttgcaaagta aaatcgctta tatgagaaaa caacttgtcg ctcaaagaaa
    11941 caaataaatc tttccccttt ttaaggggaa gattatgaaa gaattattcc aaaaaatttg
    12001 gcaaaatgaa cttcaatttt taaattttga tgctaaattt caagataaaa gcaaacttga
    12061 tacggccgag tgtgcgatta ttttaagtgt caataaagac aattatgaaa gatattttct
    12121 cttaaaagaa tttcaagagc tttgcaaaaa aattgattta agagtggata tttttagtat
    12181 acaaaatgct caaatttgta ttttaaattt ttttaaatca ggttttattt caaagcaaga
    12241 tttgcttaag gctctaaaaa ttttagaaaa aatttcaaaa aatactgaaa tatttgattt
    12301 tatttcacaa gaaaaagttc aaagtataga tcaaaaagct ttatttcaaa atgattttaa
    12361 agaattaaac accattaatt tagagcttca aaagctaagt tttgatgaaa atttaaaatc
    12421 aagacttcaa aaaactttgg aaaaatttca aaatttagag tttaatatag ccatcactgg
    12481 cgtgatgaat gcaggaaaat caagcctttt aaatgctctt ttaaaagaag attttttagg
    12541 cgtttcaaac atacctgaaa cagctaattt aacagtatta agttatggta agagcgaaga
    12601 agcaaagata tatttttggg ataagaaaga atggcaaaat atacttgaaa gttcgcactt
    12661 taatgcagat ttaaaagaat ttattgacaa gctggataag agtgtaaata tagaggattt
    12721 tatcaaagtt aaacctttaa tacaaaatat cgcactttgt gagcttaaag atttcagttc
    12781 agctaaaaat aaaatttcag ctttaattaa aaaaatagaa attaaaagtc atttagaatt
    12841 tttaaaaaat aatatttcca tagttgatac tccaggactt gatgatgttg tagttcaaag
    12901 agaaattgtt acaaatgagt atcttagaga aagtgatttt ttaattcatt taatgaatgc
    12961 ttctcaaagc ttgactcaaa aagatgcaga ctttttggtg cattgtcttt taaattcaag
    13021 gctgagtaag tttttaattg ttttaactaa agcggatttg ttaagcaaaa aggatttaga
    13081 agaagtcatt gtttatacca aggaaagctt aaaatcaaga cttgtggatt tagatgaaaa
    13141 tttggtggaa aagattgatt ttttatgtgt gagtgctaaa atggcaagtg atttttataa
    13201 aggtttagca cctaaggaaa gtttgcaaaa aagtggtatg caagaatttg aaaactatct
    13261 ttttaacgag ctttatgcag gagaaaaaag caagattgcc ttaagagctt acaaaaaaga
    13321 attacatttg gaacttaaaa atattctaag cgaatatgaa atgcaaaatc gtcttattaa
    13381 ggagaataaa caaggtgtaa gtgaagaaaa tcaaaagctt ttacttgaac ttcaaaagca
    13441 aaatatctta ttaaaagaag cacaagatga aatttcaaat tccgttgcaa aacttaaaaa
    13501 tatagatagt ggcatagata atcttgtttt acttttggct aaaaaattaa aagaacgttt
    13561 gatagatgag tttaaatatt tgaaaaataa tgcacaaaag cttaatcttt ctcgtatttt
    13621 aaatatagtt gatattacca caaaagatgg gattaatgat attttaagag aaattaaatt
    13681 tgaaaatatt aaaaaaatcg aggagcttaa aacaaattta tctttaaaat atgatttttt
    13741 aaaagatgat tttgataatg gttttgaagg ttttaaagat ggaatttcaa aaaatataga
    13801 tagtattttt caaagcgaaa aatttgcact tttaagattg aaaattgaaa aattaagcaa
    13861 tctaaaatca gatttatatg agcttgaaac gaattt
//
LOCUS       DARGEM010000038        13044 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.038, whole genome shotgun sequence.
ACCESSION   DARGEM010000038 DARGEM010000000
VERSION     DARGEM010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13044
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.038"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..87)
                     /locus_tag="SFZ78_000842"
     CDS             complement(<1..87)
                     /locus_tag="SFZ78_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N utilization substance protein B"
                     /protein_id="HEG8211725.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVD"
     gene            complement(87..551)
                     /locus_tag="SFZ78_000843"
     CDS             complement(87..551)
                     /locus_tag="SFZ78_000843"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG8211726.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            complement(548..1363)
                     /gene="kdsA"
                     /locus_tag="SFZ78_000844"
     CDS             complement(548..1363)
                     /gene="kdsA"
                     /locus_tag="SFZ78_000844"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG8211727.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVMFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            complement(1360..2292)
                     /locus_tag="SFZ78_000845"
     CDS             complement(1360..2292)
                     /locus_tag="SFZ78_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8211728.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLAAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            2393..3775
                     /gene="der"
                     /locus_tag="SFZ78_000846"
     CDS             2393..3775
                     /gene="der"
                     /locus_tag="SFZ78_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG8211729.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGIKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNILIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            3762..4259
                     /locus_tag="SFZ78_000847"
     CDS             3762..4259
                     /locus_tag="SFZ78_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG8211730.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKIYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            4256..5215
                     /gene="trpS"
                     /locus_tag="SFZ78_000848"
     CDS             4256..5215
                     /gene="trpS"
                     /locus_tag="SFZ78_000848"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG8211731.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKI
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            5226..6461
                     /gene="serS"
                     /locus_tag="SFZ78_000849"
     CDS             5226..6461
                     /gene="serS"
                     /locus_tag="SFZ78_000849"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG8211732.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            6471..8933
                     /gene="pflB"
                     /locus_tag="SFZ78_000850"
     CDS             6471..8933
                     /gene="pflB"
                     /locus_tag="SFZ78_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG8211733.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DVGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8964..9599)
                     /locus_tag="SFZ78_000851"
     CDS             complement(8964..9599)
                     /locus_tag="SFZ78_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211734.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDAAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(9697..11139)
                     /gene="pyk"
                     /locus_tag="SFZ78_000852"
     CDS             complement(9697..11139)
                     /gene="pyk"
                     /locus_tag="SFZ78_000852"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG8211735.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVENIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            complement(11188..12534)
                     /locus_tag="SFZ78_000853"
     CDS             complement(11188..12534)
                     /locus_tag="SFZ78_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8211736.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            complement(12652..>13044)
                     /locus_tag="SFZ78_000854"
     CDS             complement(12652..>13044)
                     /locus_tag="SFZ78_000854"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG8211737.1"
                     /translation="YTIEDGVVVDAGSAITIDIISNSIHLGGFILPGIANYKKIYSHI
                     SPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLIKDAAQNKKLYFTGGDGQFLAN
                     YFDHAIYDKLLIFRGMKKIIKENPNLLY"
BASE COUNT         4430 a         1948 c         2161 g         4505 t
ORIGIN      
        1 atctacaaaa acgttgtttt gagaatttaa ctcaaaagca taaagcaagg agatgacgct
       61 ttggcgaact tgatgacgcg ttgccattaa agctccttgc ttaaatttaa catctcgatt
      121 acagttgtca tagcttcaaa gcctttattg cctgctttgc ttccagctct ttctatggct
      181 tgttctattg tatctgtagt taaaacacca aagcttacag ggatattatg atttaaactc
      241 acattggcta tgcctttggt ggtttctgct gaaacatagt caaaatgcgg agttgagcca
      301 cgaattactg cacctacgca acaaattgca tcaaattttt tgctttctat agcttttttt
      361 aacgcatacg gaagttcaaa agcaccagga acaagtataa ggcttagatt ttcctctttg
      421 cctccgtgtc ttaaaaaagc atcttttgct ccttctacaa ggcgatctgt gatgatatga
      481 ttaaatcttg cattaatgat agcaattttt gtatttgagt ctaaatttaa ttttccttca
      541 ataatattca tttgttttcc tttatgatat tttgtatttc tagtaatgta ttaacgcaat
      601 ttttaaggcg tgtaagatta agcatattgg gtccatcgca taaagcctcg caaggattaa
      661 tatgtgtttc aaagaaaaag ccatctatgc ctacggctgc tgccgctctt gctaaaggtt
      721 ctacaaattc gcttttccct ccgctacttc cacctgcagc ccctggcatt tgtacgctat
      781 gggtagcatc aaacataact ggagcaaatt cacgcatgat aactaaagaa cgcatatcta
      841 ctactaaatt tccatagcca aagctagctc ctctttcagc tacaaaaaca ccattttttt
      901 gagcagcttc atagccttca tcttctatac cacgggtttg tagaactttt ttaacgctgt
      961 atttgatatc gcttgggttt aaaaattgtc cttttttgat attaactttt gccttagttt
     1021 ttgctgcagc tacaagtaaa tcggtttgac gacataaaaa agcaggaatt tgcaagacat
     1081 cagctacttc acttacaggg tttgcttgat tgctttcgtg tatatcggtt aagattttca
     1141 taccaaattc atcttttacg ctttgtaaaa tttttaatcc ttcttcaaga ccaggacctc
     1201 gaaaagaatt aatacttgtg cgattggcct tatcaaaact tgatttgaaa taaaattcta
     1261 tatttggatt ttcattaaaa ttttttaact gttcagcaac tttaaaaatc aaatctttgc
     1321 tttctatcac gcaaggacca gcaatgagta tcattttttt catttttttc ctttgttctt
     1381 aactaaaatt aatccaccaa aaataatgcc tattatacct aaaaaaacca tagtacttgg
     1441 taaattatct cccaaaatta tcccaactat catactaaat actacatcaa gataactaac
     1501 tccggcaacc actcctgctt gtttagcgat accataagct ttagtgacat gaatttgata
     1561 aatggtgcct aaagttccca taatggcaat gataagccaa gctgcaagac ttggcatcac
     1621 aaaaggcgct agaatgaaat ctaaatgtaa agaatcaaga tgctgtggtt caaaaaattc
     1681 agcactgatc atagaaatta aaggcattaa ggttcctaaa aggataaaag aaaaggcaat
     1741 ttgttctgta gtgtaagatt ttctaagttc tcttacactt gtaagagcta aagcggctaa
     1801 aaatccactc gtgataccta taactgaatt ttttaaatca aagcctgaat gatttaaatt
     1861 atgagcccaa ggctgagcga ttaaaagtac tccaccaaat gctattaaaa ttcctatcca
     1921 gcctttgata ccaatatttt ctttaaaaac aacaaaagct attaaagtaa taaaaatagg
     1981 agcagttttt tgaaaagcaa aagctccacc tagtgtaata tttgaaacat tatagaaaaa
     2041 catatatagt gaaagcgtgc ctactactcc acgaaatacc aagagccaaa aatgtccccc
     2101 ttctttatgc gccttagatc gttttaaaag atagactatg aaaaaaattc ctatgatatt
     2161 tctaaaaaac ataatttcta tagaactcat ttccttgcta agaatttttg cacaagctcc
     2221 cataagtgca aaatccaaac atgctaaaat catgaaataa attcctaaat tatgcttgat
     2281 tacttttagc atttttttcc ttgactaaaa tctgggttaa ttctagtctt tttttgctta
     2341 atattaagcc aaattttata taattttaaa aatataattt tctaggaaaa aaatgcaaag
     2401 catcatactt ataggcaagc caaatgttgg taaatcaagc ctttttaata gaatggcaag
     2461 acaaagaata gctattacaa gtgatatttc aggtacaact agagatacaa ataaaacgca
     2521 aattcatatt cattcaaaaa aagccatgct tattgatagt ggagggcttg atgaaagtga
     2581 tgaacttttt aaaaatgtga aaaaaaacac tttaaaagta gccaaagaaa gcgatatcat
     2641 actttatcta gttgatggga aattagcgcc tgatgatgag gatagacaat ttttttattc
     2701 tttaaaaaaa cttggaaaac ctatagcctt agtgattaat aaagtagata ataaaaaaga
     2761 tgaagaaagg gcttgggagt ttgcaaattt tggtataaag gaaatcttta atctttcagt
     2821 aacccataat gtaggcttag atgaacttta tgaatggctt gaaaaatttt tacatgaaga
     2881 gtttttaatc cccgatgaag aagaaaattt agaagatttt ttagagtatt atgaagaagg
     2941 aaaagaattt caatttaaag aagtcgatca aaatcatatc agagtgggta ttgtagggcg
     3001 tgtaaatgtt ggaaaatcaa gtcttttaaa tgctttggtt aaacaagaac gcagtgttgt
     3061 aagttctatt gcaggaacta ctatagatcc tgttaatgaa agtgtagttc ataaagataa
     3121 agtgatagaa tttgttgata ctgcaggtat tagaaaaagg ggtaaaattc aaggactcga
     3181 acgctttgcc ctaaatcgca cggaaaaaat tttatctcat tctcaaatag cacttttggt
     3241 tttagatgcg catgagggct ttaacgagct tgatgaacgc attgctgggc ttgtggctaa
     3301 gcattatttg ggtgtgatta ttgttttaaa taaatgggat aaaagtgaga tggattttga
     3361 taagactgta aaagaattgc gtcttgatcg ttttaaattt ctagcttacg cacccgtgat
     3421 tagcgtatca gctttaagtg gaaaaagggt gcatgtttta ctcgataaaa ttttgcaaat
     3481 ttttgaaaat ttcactcaaa aaatccaaac ttctaagctt aatatcttga tagaaaatgc
     3541 cacaagagca catcctttgc cgcatgatta tgggaaattg gttaaaattt attatgcagt
     3601 acaatatgac ttagcaccgc caaaaattgc acttattatg aatcgtccta aggccttgca
     3661 ttttagctat aagcgttatt tacaaaatca aatcagaaaa gaatttaatt ttgaaggtgt
     3721 gcctttagtg attgcttcgc gtaaaaaggg cagtaaagaa aatgatgaaa gctaaaaata
     3781 tcgtttttat aggatttatg ggttctggaa aaagcacttt agcaagagct ttagctaagg
     3841 atttagatct tgttttttta gatagtgatt ttttaataga acaaaaattt aatcaaaaag
     3901 tcagtgaaat ttttgaacaa aaaggggaaa atttttttag agaacaagag caaaaaatgg
     3961 ctgatttttt cagttcttgt gagaaaactt gtattgctac aggtgggggt tttgttaatg
     4021 tttcaaattt agaaaaagca ggtttttgta tttatttaaa agcagatttt gaatatttaa
     4081 aaaagcgttt agacaaagat gaaatttcta aaagaccttt attttatgat gaaattaaag
     4141 caaaaaaaat atataatgag cgtttaagca agtatgaaca aaaggcaaat tttattttaa
     4201 atatagaaaa taaaaatata gatgagcttt taagcgagat taaaaaggtg ataaaatgag
     4261 agtattaaca ggccttcagc caagtggcga tttgcatata ggtaattatt ttggtgcgat
     4321 taagcaaatg gtagatgcac aagaaaaaag ccaaatgttt atgtttattg ctaattatca
     4381 tgccatgact tcttctcaag atggagaaaa acttaaacaa aattccttaa aagctgctgc
     4441 ggctttttta agccttggta tagatcctca aaaaagcgtt ttttggttgc aaagtgatgt
     4501 taaggaagtt atggagcttt attggatttt atcgcaattt actcctatgg gtttattaga
     4561 gcgtgcacat agttacaagg ataaagttgc taagggactt agtgcttcac atgggctttt
     4621 ttcttatcct gttttaatgg cggcagatat tttacttttt gatacacgaa ttgtccctgt
     4681 aggaaaagat caaatccagc atgttgaaat cgcacgcgat attgctttaa aaattaataa
     4741 tgaatggggt gaaattttta cccttccaga agcgagagtt aatgaagaag tagctgtggt
     4801 tgtgggtact gatggagcaa aaatgagtaa atcttatcaa aatactatag atatttttag
     4861 cagtgaaaaa accttaaaaa aacaaatttc ttccatagtt acagatagta ccgctttaga
     4921 agatccaaaa gatcatgaaa actgcaatat ttttaaaatc gcaaagcttt ttttagatga
     4981 atcagggcaa aaagaattac aaatacgcta tgaaaaaggt ggtgagggtt atggacattt
     5041 taaaatatat ttaaacgagc ttgtaaatgc ttattttaaa gaagcaagag aaaaatataa
     5101 tgagctttta gaaaagcctt cgcatttgaa agaaattttg gattttggtg cgacaaaagc
     5161 aagaaaaatc gcccaagaaa aaatgcaaaa aatttatgaa aaaatcggac tttaaggagt
     5221 agaaaatgct agatttaaaa aatttgcaaa ataattttga tgaagtggct aaaaagttaa
     5281 aaaataaaaa agttgatgaa aatatcttaa aaaaacttgc tgaacttttt gcaagtttaa
     5341 aaaaagaaaa aatagccttg gaagaatttc aagcttttca aaataaattc agtaaagagc
     5401 ttgctacagc cgaagataaa gaaagtttaa aagcaaaatt aagcgaaaat aaaagcaaaa
     5461 ttaatgagca aagcgctaaa gtaaatgctt tagaaaatga gcttgaggaa atcgctcatg
     5521 ccatcccaaa tatccctgat gaatgtgtgc ctgtgggtga agatgaaaat gaaaatgtgg
     5581 agcttaaaaa agttttaaat ccacctagct ttgattttac tccaaaagaa cattttgaat
     5641 taggcgagag tttaaattgg cttgatttta tgcgtggggt aaaaatttca caaagtcgtt
     5701 tttgtgtgct taaaaatgaa ggagctttat taagccgtgc tttggtaaat tatatgatag
     5761 attttaatag aagtcgtgga tttgaatttg ttaatgtacc ttttttggta aatggtgcta
     5821 ctatgtttgg gacgggtcag ttgccaaaat ttaaagaaga tatgtataag gtagatgatg
     5881 aggatttgta tttgatctca acttctgaaa ttccagtaac caatctttac agcggagaaa
     5941 ttttagcgag tgaaacttta ccgataaaaa tgacttgtta tagtgcttgt tttagaaaag
     6001 aagcaggcag tgcagggcgt gatacaaggg gtattataag acaacaccag tttgaaaaag
     6061 tagagcttgt aagtatcact aaacctgagc aaagtgatag tgtgtttaat gaaatgcttg
     6121 agtgtgcaag tgatttgctg agttctttag gtttagcgca tagacatttg atgctttgca
     6181 ctggagattt gggttttagt gcagcaaaaa ctgtagatct tgaagtgtgg cttccaggac
     6241 aaaataaata tcgtgagatc agctcggttt caaattgtcg tgattttcaa gcaagacgcg
     6301 ctaaaattcg ctataaaaac gaacaaggaa aaaatgaact cgtccacact cttaatggct
     6361 catctttggc agtaggaaga accttggtag cgattatgga aaattatcaa gataaagaag
     6421 gaaaaattca tattcctgat gttttgaaaa aatattttta aagagtatag atggctgaac
     6481 aagaagatat aatactagaa aaacccgaag atggcttaaa tcaaccaaga cttgatgaga
     6541 gtttagaggg atttaagggg caagaggggc aagctccaga agatgaagaa tttgcatcat
     6601 tgccagaaga attacctcaa gaaaatagtg atagtggttt taaatttaca agagaaagtg
     6661 cgcctgaaga tgtatcaact tttgaagaag ttgaaagtca agagcctacg ccttggtata
     6721 aagatcgtaa gtttatgtct cttgtgggtt tatctttggg gattatttgt attttagttt
     6781 ttacactttt ttatttaact tttagtgaag gaaaaattaa accagatatt atagcttcta
     6841 agcctttaga acaacctgtt gttatgcctg atgaatcata taaatacaat gatatgcaaa
     6901 gaattgatgg tatgatccaa aaagcaaatg ctttatattt aaagggtgag gttgaacagg
     6961 ctttaaaagt ttatgagcaa gttgccgtat ataacgaatc tttatctaat tataatttag
     7021 gcgtttctca aatgaatgag aataaattcc aagaagcttt tgaaagcttc aagaaagcta
     7081 tagccaatgg agaaaatcaa agtgtagctg ctatcaatgc tgctgtttgt gctttaaagc
     7141 ttaatgataa ggaaaaattt agatattata ttgatttagc tcaagtgtat cttccaaaag
     7201 aaggaaaatc aaaattatat gattattatt taagcttgat taattattac aaaggatatt
     7261 accctgaggc cttacaaatg ttacaaagaa cagatgtgga gccgtattct gatgttgcaa
     7321 agtatttgtc tgctaaaatt tatgcaaaaa tggactttga ttccaaggct atacagcaat
     7381 taaattctca aggcaatttt gaatctagtt tatctttagg tcttttatac gctagaatag
     7441 gagaatatgc taaagctaaa gtcgctttaa gtacagcgat gaaaattgaa agagatttta
     7501 atcagagttt ggcggcttta acattggttg atattaaaac aggaaattat caagatatgt
     7561 tagcgcgctt gcaaaattct tatgataacg ataaagatag atataagatt ttagatactt
     7621 ataaaattca agttcgttta aataaggatc tttttaatat agcagttgct caaaattctt
     7681 tttcaaaaga tttgctaaaa aaacaaaaag atcaattcga tttgcttttt tattttgcac
     7741 cttatcaggt ttttgatagt aagcaggctg ctttatatat taaaaaagct aatgttacag
     7801 atttcgttga tgatagtact gatgtgggaa tttatcttaa tataagcaag gctctttcat
     7861 ctaccaatgt aaaaattgcc aatattatta actatgcatt aaatcagaag ttacgccttg
     7921 ctaaccaaga atttcaaaaa cttatcaagg attatccaga acatagtatt ttacattata
     7981 atttggcttt aacttatgcc caaatgcaaa attatgaact tgcttataag catttttcaa
     8041 gttcatatca tcttaatcct aaaaattact tagcaggtgc ttttgctatg ttttgtgcaa
     8101 aattaattga tattgataca actaaacttt acaatgaaat tcttgataat atagctgctg
     8161 attctaattt taaagctaat atgcaaaaaa gtatgttatt tttagttaat aataattata
     8221 tttctatgct tccttattta gatgaaacaa aaaaagatac gcctttgagt ttgatttttg
     8281 aagctattgt tgctaaaaat aataacctta ataatcaagt agatgtgaaa attgctaaat
     8341 tgcgttcaga gttgcctgaa gatattttgg caaatatttt gtattttaat tctttaaatt
     8401 caaatttaaa tattaaagaa tatgctcaaa atgctcaaat tcattttaaa aatttaaaac
     8461 ttgattatcg tagtgttttt ggtgggccaa atatagctag ggaattttat gttaatttaa
     8521 tgcatattgc agggctttta aatttagaaa gacagaaatt taaagagttg attaatgttt
     8581 caggagcaaa agatgagggt attttacaaa ctttagctta tttggatatt tttgcacagc
     8641 aatacgagga ggcttatgcg ctttataatt ctttgattga tgattatgga gctaaagata
     8701 ctaaaacttt atttttagca gccgtagcag ccgtaggtgc aaataatcca aattcagcta
     8761 tagcgctttt gcagctttct aaacttacag ataaaaataa caaagagagt aaagcagctc
     8821 ttggtatgtt gtatcaagaa gtaaagaact atgaagctgc gatatctcag tataaaactt
     8881 tacctaataa ttttaagagt gaatttttta cttttgatat taataacaac taaaaatgct
     8941 tagaaatttc taagcatttt tagttaagct tgaagatcta gagtttttcc gcctagttca
     9001 tcgatgcgat cgctaacttt tttaagtgcc gcatctattg tatcttgact gatttgagga
     9061 agttctccac cccacatttt ttctgcttgc tcaaatcctt ttttcatacc ttcaagacct
     9121 ttttttaatt tttcaacatc atcgccaccg cctttaataa caaaatccgc gatgcgattg
     9181 gctgtatttt ccactccaaa aaaaccatct tcacttacaa gttgttgaag ttcatctgta
     9241 ttcatatcaa gtggattttt gccactgtag cctaaggatg caaaatcaat atttgtaagt
     9301 atagatttcg cagcatctaa attggcacca tttaaaagac tatctagtcc agtttgggca
     9361 ttgctcgaac ctattacagc attcattgtt tgctgttgaa actgaactag gtaaatttgt
     9421 gtaatgcctt ttccaccaag tgcatttaat ttttcaaggg tatttttatc tacatccttg
     9481 ctagaattag cactttgaac atttttgtct tttgtgtttt ccttagcatc atctgccttc
     9541 ttattgctaa cttgtgtttg tgccatgcta gcgatatttg aaaaagtatt cacttgcata
     9601 tttgctcctt tgtgtgaggc tttaatttat atcgactttt gacttaaaaa atttataagg
     9661 acattaaatt ccttattttc aaaggaattt aatgttttat tgtagataat aagcaatttg
     9721 ctctttattg agaatgcgga taagattgct agtaccttct actcctgttg gaaagcctgc
     9781 agttagaaga tagcatttat cttcatccat aaaacctttt tcaacacttg atcttacaga
     9841 gtcttttaat aattctgtaa gttcattact tttgttaacc aagatcgcag gattaactcc
     9901 ccaaactata cttaaagagt ttaaggtttt ttcagaatgc cctactgcta tgatttctat
     9961 atttggacga tatctcgcaa tcttaatagc agattttccg ctacttgtta aagaaaaaat
    10021 agcatcagcg ttaagatctg ttgcaagatg agctgaagaa cgcatgattt tatctgtatt
    10081 gtctaaatca ttaaaatcat taaatttgtt atatggatag cgtttttctg tttctattat
    10141 agtttggcac attatatcaa cagcgtttgc aggatctata ccaacggcac tttcttcact
    10201 tagcattact gcatctgttc catctaaaac agcatttgca acatctgaaa tttcagctct
    10261 tgtggcggtt ttgcttttgg ctaatgaaaa aagcatctga gtcgcagtaa taacaggctt
    10321 agaggcattg tttgcttttt gtatgatttc tttttggata ttaggaactt tataataagg
    10381 tacctcaata cctaagtctc ctcttgcaac cattatacca tcgctagatt taataatctc
    10441 atcaatattt tctactgcat caaatttttc aatttttgca aaaatagata tttttgcgtt
    10501 attttgtgct aaaatttcac gaacttcatc aatatcgtgt gcattttgta cgaaagatat
    10561 tgctaaaaaa tctacttcat tttttatacc ccaaagtaaa tcatttttat ctttttgtgt
    10621 aataacatca atattgattt tagtattcgg aaaattaata cctttatttg agtttaaaaa
    10681 accatcattt tctataatgg tttcaatttt ttgatcatct atgttttcta ctttagcacg
    10741 aattgatcca tcatatagat aaatatattc atcaattttt aacatatcta aaatagattt
    10801 ttgattaata ctgattttat aatgattttg agcaatcttc tcccctaaaa ttgtttcacg
    10861 ataaaaatca agtctatcac ccttttttaa ttcaaatggt tctttaagtt cacctgtacg
    10921 aattttagga ccactaatgt cttgtaaaat tccaatacga gtatgcaatt ctttagctac
    10981 tcttcttatg gtatctaagt tttttttatg atactcatgt gttccatgag aaaagtttaa
    11041 acggaaaaca tttacaccat tgataatcat ttggcgtaga atttcttcct tttcacttgc
    11101 tggacctact gtggctacaa tttttgtttt tttaagcatg gtaaactcct tttgaaatta
    11161 ttgtagctaa aaatagaaac aaaatgatta caataattct gaagaaaatt tatcttcgtt
    11221 aaattccatt cctaggtaat tacatataag ctttgcatct ctttcagcat ttcctaaaca
    11281 acttgttgcc ccaggacttg gagtcatatt gaaaataata ccaggggttt ctgtgatgct
    11341 tgcttcacct agcattaatt ctcctttagt tttatcaata acttgtggtc ttacgcctcc
    11401 aaaacctttc gcataataaa tatcgcttgc tttaagactt gggactattt ttttggcatc
    11461 tttaacaaat aagcttttat caataaaagg tagttcaaaa agataattat aaaagatgta
    11521 atttctaatt gttgcatctt taaacatatt aaaagttact tttaaaacag ttttatcaag
    11581 ttttagtgct tcaaaaaatt ctggaactga ttttagacca tgataacgtt ctagttttgg
    11641 aataacaagt gcagtaggtc caaagcgagt gttcatatca gcaagcaaat caggatctcc
    11701 atgaagggct gcaaatggaa gtttaggatt ttgcaccata taaactttgc catttaaaag
    11761 tttttgtttg gttaaataaa aacttcctgc aacaggccaa caagacttat ccatacctaa
    11821 gttcatttta tgtgctaaat ataaagagtg cgccccagca ttgacaacta cgcttttggc
    11881 atggtattct tgatgatttg aggtttttaa tataaaaata tcatcttttt tttctatgtg
    11941 aataatttct tgattaaagg caacgaaagt atttttattt tgtttttggg cttgttctat
    12001 tagatttata ctcattttcc caaaatctac agttgtaaaa acctcgccgc tttcaacacc
    12061 catggcacag atattttcag gtctatcttg attgcaatct tctcctaaaa caaccttggg
    12121 ttcaatttgt ttgatttttg ctttatcgaa aaattttata taaggataaa gttctttaaa
    12181 ttcttcatag cgttttttca tataatcaca ttctatatct ccaacagcta gagccatttt
    12241 ttgatgagaa aacatgaaat tattttgcgc attttgcatg agtccatatt taactatcat
    12301 atcagctgtt ctttttactt ttcgcgcttt ttctaaagta taattggttt caatatctcc
    12361 acaatgaatg gtttgagaat tactcgttcc cttagaattt aatgttgcag ctgtattata
    12421 tttttctatc aaagcaatat ttttaatatt tgtatatctt gcaagctcgt aaaataatgc
    12481 tgctcccgaa attccagctc cgatgacaag cacatcaaat tcttgttggc tcattgtttt
    12541 tccttttttt attttaataa acttttttct aaataaagtt taattgaatt tgttttacaa
    12601 aaagttaaat ttcattaagg tttgatatca atgagaattt ttgtaacatt tttaataaag
    12661 taaattggga ttttctttta taatcttttt cattcctcga aagattaaaa gtttatcata
    12721 aattgcgtga tcgaaataat ttgctaaaaa ttgtccatct ccaccagtga aataaagctt
    12781 tttattttga gcggcatctt ttatcagtag gtaaattcct ttaaaaacac cataacttaa
    12841 agcatccata gttttttgcg ggaatgcatc aagactaact tgagtattaa attcactttt
    12901 taatcgcggt gaaatatggc tataaatttt tttataattt gcaatacctg gcaagataaa
    12961 accaccaaga tgtatagaat tagaaataat atcaattgta atagcactac ctgcatctac
    13021 aacaactcca tcttcaatag tata
//
LOCUS       DARGEM010000039        13018 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.039, whole genome shotgun sequence.
ACCESSION   DARGEM010000039 DARGEM010000000
VERSION     DARGEM010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13018
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.039"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1787
                     /locus_tag="SFZ78_000855"
     CDS             <1..1787
                     /locus_tag="SFZ78_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8211738.1"
                     /translation="EYLLKLDFLKIFDLKINTHYEINLSKQEILKEEIFKTKNSKMKL
                     KSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDESFCEFLRLFDKDNMLNFASGI
                     SIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKK
                     YFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQ
                     ISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKA
                     GLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDFFYETHIHQK
                     AYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLA
                     EPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKVFANLLDKEYQKYNISELDLE
                     VFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL
                     IIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQILHQKAKSLDELRERLKDLV
                     LMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            1784..4549
                     /locus_tag="SFZ78_000856"
     CDS             1784..4549
                     /locus_tag="SFZ78_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG8211739.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLITELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQKIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEVFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            4633..5058
                     /gene="rplM"
                     /locus_tag="SFZ78_000857"
     CDS             4633..5058
                     /gene="rplM"
                     /locus_tag="SFZ78_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG8211740.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKHFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            5061..5450
                     /gene="rpsI"
                     /locus_tag="SFZ78_000858"
     CDS             5061..5450
                     /gene="rpsI"
                     /locus_tag="SFZ78_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG8211741.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDDDFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            5575..6534
                     /gene="cadF"
                     /locus_tag="SFZ78_000859"
     CDS             5575..6534
                     /gene="cadF"
                     /locus_tag="SFZ78_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG8211742.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGVRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGTGVKFCLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            6534..7175
                     /locus_tag="SFZ78_000860"
     CDS             6534..7175
                     /locus_tag="SFZ78_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8211743.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLTYREIYTQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKSRSMVFLNAYEAVNYIARLN"
     gene            7267..10827
                     /gene="nifJ"
                     /locus_tag="SFZ78_000861"
     CDS             7267..10827
                     /gene="nifJ"
                     /locus_tag="SFZ78_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG8211744.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            10851..11162
                     /locus_tag="SFZ78_000862"
     CDS             10851..11162
                     /locus_tag="SFZ78_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8211745.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            11140..12552
                     /gene="mshL"
                     /locus_tag="SFZ78_000863"
     CDS             11140..12552
                     /gene="mshL"
                     /locus_tag="SFZ78_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG8211746.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            12545..>13018
                     /locus_tag="SFZ78_000864"
     CDS             12545..>13018
                     /locus_tag="SFZ78_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211747.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQK"
BASE COUNT         4792 a         1578 c         2318 g         4330 t
ORIGIN      
        1 ttgaatatct tttaaaactt gattttttaa aaatatttga tttaaaaata aacactcatt
       61 atgaaatcaa tctttcaaaa caagagatct taaaagaaga aatttttaaa acaaaaaatt
      121 caaaaatgaa actcaaatct tttgaattaa gggctttgca atgtgctttt gttatggatg
      181 aaatttcaca ttttgtacgc aaaggtttaa agcctgaaaa tattgcagtt ataactccag
      241 atgaaagttt ttgtgagttt ttaagacttt ttgataaaga caatatgctt aactttgcaa
      301 gtggaattag tattaaagag agtttgtttt atcaaaaatt tcaagcactt tatgaaagtg
      361 ctagtagtgc ttcttttgtc tataaaaatc aagaggatta ttttgaagac acgcagatga
      421 tttttgatta tcacaatacg cttttacatt ctttaaaact tgattttata gagtttaaaa
      481 agtattttga tgagaaatgt gattttgaat attttgaaaa attacttgct ttgtttttag
      541 aaaatgaaaa gcaagagctt atttatttga tacgaaaaga actttatttt attaaagatt
      601 tattgaaaaa tcagtcttta actcttaaag agttgatcca tctttttttc atgcaaattt
      661 cacaactttc ccttagtgat gtaggtggag gtaaggttac ggtaatggga cttttagaaa
      721 gtcgtgggct ttgttttgat ggagtgattt tggttgattt taatgaagaa tttattccta
      781 aaagaagtgt taatgagctt tttttaaaca atgaagtgcg taaaaaagca ggattgatta
      841 gctatgatag aagagaaaat ttacaaagat tttattatga aagcttgatg aagaatgctt
      901 tagaagtaag tatttgcttt gtggaaaatg aagaaaaaag caaatcacgt tttttagatg
      961 aacttgattt tgactttttt tatgaaactc atatccacca aaaagcttat cttaatgctt
     1021 taaaattaga ctatgaaggc ataaaaccta atctaactcc tataaaagct cctattttaa
     1081 agcataatcc tttcgagttt ccgctttctt ttagtcgttt taatttattg gaaaatcaaa
     1141 aaagaactta ttattatcgt tatattttaa atttagcaga acctagggtt ttaagcgagg
     1201 aaagcaaagc gaaaaatcaa ggaaatttta tccataaaat gcttgaaatt tattataaaa
     1261 attatgcaaa taatgatttt gatataaaag tttttgcaaa tttattggat aaagaatatc
     1321 aaaaatacaa tatcagtgaa cttgatcttg aagtatttaa attaaaattt atacaatttg
     1381 ctaaaaatga aaaagagcat ttttcaaaag gcttttatgt cgcacataca gagcttgagt
     1441 taaacaatat tttaaagctc ggaacagata gtataaaact taagggtact atagatcgta
     1501 tcgatagttc aaaagaaggt aatttgatta ttgattataa aagtggaaaa gtgccaagta
     1561 attcttatca acttgctttt taccaagctt tatatgatga aaatgcaagc gtgggttttt
     1621 atgatttaaa tagtatgcaa atattgcatc aaaaagccaa aagtttagat gagctaagag
     1681 aaagacttaa agatttagtt cttatgagta aggaagaaat agagtttgaa aatgaacaag
     1741 atgagtattg tccttataaa ctcatttata aaaaggaatt aaaatgagtc aatttgagcc
     1801 ttttttggca ttagaagcga gtgcaggaag cggaaaaacc tttgccttga gtgtgcgttt
     1861 tgtagcactt attttaaaag gagctaggat taatgaaatt ttagctttaa cttttaccaa
     1921 aaaagctgct aatgaaatgc aaaaaagaat tattgagact tttttaaatt tagaaaaaga
     1981 aaataaaacc agtgaatgca atgaactttg caagctttta ggtaaagata aagaagagct
     2041 tatttcttta agagatgcta aaaaagaaga atttttaaga acagagttaa aaatcagtac
     2101 ttttgatgct tttttcggaa aaattttgcg tgtttttgct ttaaatttgg gcttaagtag
     2161 tgattttaca atgagtgaag agaggcttga tgtaagagag atttttttaa aacttcttaa
     2221 aaaagatgaa ttaaaagatt tggcttatta tattaattta gttgatgaga aagaaaattt
     2281 ttttaacgag cttgaaaaat tttatgagaa tgcttatttt caaaatcgtc ctaaaattct
     2341 aaatccaact aaagcttata tcaataaagc ttatagtgag ttaagaagtt attgtttggg
     2401 tcttactcat gtaaaaaatt ataaaaattt gtgtgacaat tttaaaagtg aagttttaga
     2461 tttatctgta tttatgcaat caagttttat gacaaaattt gaaagtacaa aatatttgca
     2521 agatttagaa agcactaact tgcattttag tgcaaaaaga atggagctta taaatgcttt
     2581 aaatacttat gctatagagc ttgaaaatta taaaattgct aatttaatga atcttttaaa
     2641 tcattatagt gaagctaaaa atatatttca taaagataaa aataccttaa atttccaaga
     2701 tgtgagtaaa aaagtttatg agctaataac tagtgaattt aaggatatga tttattttcg
     2761 tttagatggt tttatttcgc atttgcttat tgatgaattt caagatacaa gcgtgatcca
     2821 atatcaaatt ttacgccctt tgattactga gcttgtttca ggagaaggag ttaaaaaaaa
     2881 tcgcactttt ttttatgtag gagataaaaa acaaagtatt tatcgctttc gtaaaggaaa
     2941 aaaagaatta tttgatttgt taaaacaaga atttagtcaa attaaaagtg ataatttaaa
     3001 tactaattat cgttctaaag agcttttggt tgattttgtt aatgaaactt ttaaagaaaa
     3061 aatcaaagat tataaagaac aatttgcctt agaaagtaaa aaaggcggtt ttgtgcgtat
     3121 tgtggagtct aaggaacaaa aggttaaaaa ccaagcccaa aaaattaagg aaaagacttt
     3181 agaaacttta tttgagcaaa ttaatttttt aagatctaaa aatatttctt atgatgatat
     3241 ttgtattttg tgttggaaaa atagcgatgc agatatggtt ttggattttt taagagagca
     3301 aaatattcct gcatttactc aaagtaatgt tttgcttgaa aataaagcaa gtgtaagact
     3361 tgttttagaa tatgctaaat attgtatttt tggtgatgag ttttacttgg tatttttaaa
     3421 ggaactttta ggttttgagc cgagaaaaat tacccttgat ttttcaaaaa atgctatgga
     3481 aaatgtactt tttttaataa aagaattaaa acttgattta aatgatatcg ctttaataca
     3541 atttatcgaa tatgctaaaa ctaaggagaa ttttttaaag cttttatttg agccttgtgc
     3601 tttgaaaata gtaagcgaac aaaatatggg aattagtatt atgagtgtgc ataaatctaa
     3661 gggtttggaa tttgatcatg tgattttact tgatagttta tctaaaaaca attcaaacaa
     3721 tgaagatatc atgcttgaat atgatatcaa tcaaggttgg caactccata ttaaagataa
     3781 aattcgagag cttactaaag agcctattta tactcttttt aaagaaaata ttacaagagc
     3841 aaattatgaa gatgatatta ataaacttta tgtggctttt acaagagcta aggaaagttt
     3901 gatcatcata aaaagaaatg aagaaagtgt aaatggaaat tatccaagtt attttaaggg
     3961 gggattttta aatatacatt ctcaagagag aggtttttta gaaagcaaag aacaaatttt
     4021 aagcgttaaa aaagaaagca ttcaaacttt gcaaaaattt gaaaaaatta ccttgcaaga
     4081 aattcaaagc gaagaaaggc ttgatagtaa agaactatat tttggaaatg cttttcactt
     4141 ttttatgcaa aatttaaaac ttcctaaggg tgaaaatttt caaatactta ctcaaagatg
     4201 caagagtaaa tttagacatt ttttagatga gagtgatttt gaaaagcttt ttaaaagaat
     4261 tgaaatttta cttaaaaata ttcaatttca aaatttgatt ggtgatggaa agcttttaaa
     4321 agaacaagct ttgagtttta atggagaaat taaacaatta gacttgcttg ctttaaaaga
     4381 tgaagaagtt tttataattg attataaaac aggtcttgct atgcaagata aacataaaga
     4441 gcaggtagga acttataaga ttgccattag tgaaattttg caaaaagata aagtgcgtgc
     4501 ttttatagtt tattgtttgg aaaatgaaat tcaaattttg gaaatataaa ctttattttt
     4561 acttaaatta agtaaaaatt aatattattt tttatacaat cacattttaa atttttggca
     4621 aaggtaaaaa ttatgacaaa gataacaaag ccaaacgaag taaaacgaga atggattgtt
     4681 ttagacgcag aaggcaaaca ctttggtcgt cttttaactg aagtagcaac aattttgaga
     4741 ggtaaaaaca aaccttgctt tactccaaat gttgattgtg gtgattatgt aattatcatc
     4801 aatgcttcaa aagctgtatt tacaggtgct aataaagcag aagataagct ttatcataga
     4861 cattcaggat attttggaag tgtaaaaagc gaaaaatttg gtgatttact tgaaaaaaat
     4921 cctgcaaaat tatataaatt agcagttaga ggtatgcttc ctaaaacaaa tttgggcaga
     4981 gctatgctta aaaaattaaa aatctatgcg ggtagtgagc acccacacac tgcacaaatt
     5041 gctaaagaag gaaaataatc atggcaacaa catacgcaac aggtaagaga aaaactgcta
     5101 tcgcaaaggt atgggtaaaa ccaggtagtg gtaaaattag tgttaatggt gttgatttaa
     5161 acacttggct tggtggacac gaggcgatta agcttaaagt ggttcaacct ttacttgtga
     5221 ctaaacaaga aacttcaatg gatattaaag caaccacttt aggcgggggc tatagtgctc
     5281 aagctgaagc tttaagacat ggaatttcaa gagctttagc agctatggat gatgatttta
     5341 gagccttatt aaaacctaaa ggacttctta ctagagatag tagaactgtt gagcgtaaaa
     5401 aatatggacg ccgcaaagca agaagaagcc cacaattctc taaacgttaa tatttttggt
     5461 gggattttcc cacctttcta caatttttta taaaactcat ccttttttct atcatttatg
     5521 ttataattgc aaaatttaaa tttttatttt ataacacaat gaaaggtttt ttctatgaaa
     5581 aaaatattct tatgtttagg tttggcaagt gttttatttg gtgctgataa caatgtaaaa
     5641 tttgaaatca ctccaacttt aaactataat tactttgaag gtaatttaga tatggataat
     5701 cgttatgcac caggtgttag acttggttat cattttgacg atttttggct tgatcaatta
     5761 gaatttgggt tagagcatta ttctgatgtt aaatatacaa atacaaataa aactacagat
     5821 attacaagaa cttatttgag tgctattaaa ggtattgatg taggtgagaa attttatttc
     5881 tatggtttag caggtggagg atatgaggat ttttcaaatg ctgcttatga taataaaagc
     5941 ggtggatttg gacattatgg cacgggtgta aaattctgtc ttagtgattc tttggcttta
     6001 agacttgaaa ctagagatca aattaatttt aatcatgcaa accataattg ggtttcaact
     6061 ttaggtatta gttttggttt tggtggcaaa aaggaaaaag ctgtagaaga agttgctgat
     6121 actcgtccag ctccacaagc aaaatgtcct gttgaaccaa gagaaggtgc tttgttagat
     6181 gaaaatggtt gcgaaaaaac tatttctttg gaaggtcatt ttggttttga taaaactact
     6241 ataaatccaa cttttcaaga aaaaatcaaa gaaattgcaa aagttttaga tgaaaatgaa
     6301 agatatgata ctattcttga aggacataca gataatattg gttcaagagc ttataatcaa
     6361 aagctttctg aaagacgtgc taaaagtgtt gctaatgaac ttgaaaaata tggtgtagaa
     6421 aaaagtcgca tcaaaacagt aggttatggt caagataatc ctcgctcaag caatgacact
     6481 aaagaaggta gagcggataa tagaagagtg gatgctaaat ttattttaag ataatgaata
     6541 aaactatttt atttgattta gatggcactt taattgattc tactgatgct attttaaatt
     6601 ctttccaagg agcttttaaa gcccttggat taacttctaa aaataatgaa gaaatcaaaa
     6661 atctcatagg ttatccttta gagcaaatgt ttagaatgct ttatccagat aaagtaaatt
     6721 taagtaaaga atttgtatta acttatcgtg aaatttatac acaaatttat ttagaacaaa
     6781 ccactctttt gcctaaagca aaagaggcat tagaacttgg aagcgaaatt gcagatcttg
     6841 gtatagttac aacaaaaggt ggtaaattta ctccgatttt acttgattat ttgggagtta
     6901 aaaaattctt taaaacttta attactcttg aagatgtcac aaatccaaag ccaagttccg
     6961 aacctataat tttagcctta aaaagactca ataaaactca agaaaatgcc tatatgatag
     7021 gcgatacaat actagatatt caagctgcaa tttctgctaa tatcactcct ttggccttaa
     7081 cttgtggcta tggtaatgaa aatgaattaa aatcccgttc tatggtattt ttaaatgcat
     7141 atgaggctgt taattatata gctagattaa actaatttca agttttcgtt aaacgccttt
     7201 taagagaatt tatagtaaat tgatagctaa aaaatataaa aattatcaat ataaaggaag
     7261 gtctcaatgg gtaaaattat gaaaactatg gacggaaatg aggctgctgc atacgctgcg
     7321 tatgctttta ctgaagttgc tggaatttat cctattacac ctagttctcc tatggctgat
     7381 tataccgata tgtgggcagc tgcaggaaaa aaaaatcttt ttggagttcc tgtaaaaatc
     7441 gtagaaatgc aaagtgaagc aggagctgca ggtagtgtgc atggatcttt acaagctggg
     7501 gctttgacta caacttatac ggcttctcaa ggattactcc ttaaaattcc aaatatgtat
     7561 aaaatagcag gtcaattact cccctgtgta atccatgtag cagcgcgttc tttggctgct
     7621 caagctttgt ctatctttgg tgatcatcaa gatatttatg cagcaagaca aattggtttt
     7681 gctatgcttt gttcgcattc tgtgcaagaa accatggact tagctggtgt agcacattta
     7741 gctgcaatta agggaagagt gccattttta catttttttg atggttttag aacaagccat
     7801 gaaattcaaa aagttgaagt aatggattat gcgcattttg atagattatt agatagagaa
     7861 gctttgcttg aatttagaaa taatgcttta aatccagaaa atccaaaaac acgtggaaca
     7921 gcacaaaatg atgatattta ttttcaaact agagaagtaa gcaatcgttt ttacgatgct
     7981 ttacctgatg ttgttaatga atatatgcaa gaaatttcaa aaattacagg tagagaatac
     8041 aaaccattta cttattatgg ccacaaagag ccagagtgtg tgattgttgc tatgggttct
     8101 gtaactcaag cacttgaaga agtggtggac tatcttaatg ccaagggtga aaaggtaggg
     8161 attttaaaag tttatcttta tcgcccattt agtttaaaat atttctttga tgttatgcca
     8221 aaatcagtga aaaaaatcgc ggttttagat agaaccaaag aaccaggaag tctcggagaa
     8281 ccactttatc tcgatgtaaa atcagctttc tatggaagag aaaatgctcc tgttatagtg
     8341 ggtggaagat acggactttc ttcaaaggat gttgatcctg ctcaaatgat agcagtattt
     8401 gaaaatctta aacttgataa tccaaaagat ggctttactg taggtataat tgatgatgta
     8461 actcatactt cactgagtac tggagagaaa atttcacttg gagatgaaag tacgatcgaa
     8521 tgtttatttt acggacttgg tgctgatgga actgtgggcg caaataaaaa ctcgattaaa
     8581 atcatcggag ataaaacgga tttttacgct caagcttatt ttgcttatga ttctaaaaaa
     8641 tcagggggtt atacaagaag ccatttaaga ttttctaaaa aacctatccg ttcaacttat
     8701 cttgtttcaa ctccgcattt tatcgcttgt tcggtagcgg cttatttgga aatttatgat
     8761 gttttagcag gaattcgcaa aggaggaact ttccttttaa atagtatttg gaatgctgaa
     8821 gaaaccataa gacaacttcc agatgcagta aagaaaactt tagctgaaaa agaagtaaat
     8881 ttttatatca tcaatgcaac taaactagct cgtgatatag gtttgggaaa tcgtacaaat
     8941 accattatgc aatcagcctt tttcaaactt gcaaaaatca ttccttatga agacgcacaa
     9001 aaatacatga aagagcttgc gtataaatct tatagtaaaa aaggcgatgc tattgtagaa
     9061 atgaattaca aggctattga tgtgggtgct gatggacttg taaaagttga agtggatcca
     9121 aattggaaaa atttagagct taaagaaaaa gaacaaacca atgcctataa aggtactgaa
     9181 tttgttgaaa aaatcgtaaa acctatgaat gcggctaagg gtgatgattt acctgtttca
     9241 gcctttttag gttatgaaga tggaagtttt gaacacggca caaccgaata cgaaaaacgc
     9301 ggtgttgggg ttatggtacc aagatggata gaggcaaatt gtatccaatg taatcaatgt
     9361 gcttcagttt gtccgcatgc tgttatcagg ccatttttga tcaatgatga agaaatggca
     9421 aatgcacctc gcggtgtaaa agatcatgct ttagaagcta aaggaaccaa aggagaaaaa
     9481 ttaagcttta aaattcaagt ttctccactt gattgcacag gctgtgagct ttgtgttcat
     9541 gagtgtccta ctaaagaaaa atctttggtt atggtaccac ttcaagaaga gatggatttt
     9601 ggtgagcaag aaaatgcgga ttatttattt aaagaaatca catacaaaga tgatatttta
     9661 aataaagaaa ctacaaaagg agcgcaattt gcccaacctt tatttgaatt ccatggagct
     9721 tgtcctggat gtggagaaac tccttatatt actttaatta caagattgtt cggtgaaaga
     9781 atgattgtgg ctaatgcgac aggttgtagt tctatttatg ggggttcagc tccatcaact
     9841 ccttatagaa aaagtgtgaa aaatggacac ggtcctgctt ggggaaattc actttttgaa
     9901 gacaatgctg agtttggttt gggtatgaaa attgcaactg aaaatacaag acaccgcatt
     9961 gaacatatca tgaatgaaag tatgcaagaa gttccaaatg ctttatcagc tctttttaaa
    10021 gattggattg caaataaaga caatggtgct atgtctgtgg aaattaaaga taaaatgatc
    10081 cctattttag agcaaaataa aaatattaaa gccgtacaag atatattaga gcttaaacag
    10141 tatttaagta aaaaatctca ctggattttt ggtggtgatg gttgggctta tgatataggc
    10201 tatggcggac ttgatcatgt tttagcaagt ggagaaaatg taaatatttt agtgcttgat
    10261 acagaagttt attctaatac aggcggtcaa agttcaaaat cttctagaac aggagctgta
    10321 gcacagtttg cagcagcagg caaacctata cagaaaaaag atctaggtca aattgctatg
    10381 acttatggtt atatttttgt agcacaagta aattcaacgg caaattatac tcatcttatc
    10441 aaagctatca ctgcagctga ggcctatgat ggaccatctt tggtgatttg ttattctcct
    10501 tgtatagctc atggtattaa aggtgggctg ggttactcag gagagcaagg tgagcttgct
    10561 acaaaatgtg gttattggcc actttatacc tttgatcctc gtttagaaga gcaaggaaaa
    10621 aatcctttaa ctctaacagg aaaagaacct gattgggatt tatatgagca atttttgatg
    10681 aatgaagtgc gttataattc acttaaaaaa gcaaatcctg aacacgctgc tgagcttttt
    10741 gaacgcaata aaaaagacgc tcaacgtcgc tatagacagc ttaagcgtat cgctatggct
    10801 gattatagca atgaggtcga aagctgataa aatatatttt tagtgctaca ttgtgtttta
    10861 gcactttgtt tgcacaagat aattttgaag agtattttaa acttatagat aaagaaaatc
    10921 gtataaattt taatactctt caaaacccat ttgtgaatcc tacttttgaa aaattaagac
    10981 atattaaaat tactgcaatt atgcttgata aagtaaaaat ttatgatcga tggtataaaa
    11041 aaggtgatat gattgatgat gctataatat atgaaataaa tactaaagag attaaattcc
    11101 aatatgataa tttagaaatt gcaatccaaa taaataaaaa tgataagatt aatattaatt
    11161 aacattcttt tttgccatta tctttatgct ttagattgtc aaaagcgtct ttttgatatc
    11221 agtattaatg aaaaattaag catacaagaa agtcttgatg agcttgcaaa atattgttct
    11281 tttagtatta ttgttaaaga taaaattgcc aaagaaaaat tagaaatatt gcaaaactct
    11341 gtcaatattc atcaaatgag tttagacgaa atttttaatt tttttatcaa agagcatgat
    11401 cttagctatg attttgatgg taaaatttta agaatttcag gcattaatac gaagattttt
    11461 aagataagtt atatcacttc tatcagagaa ggacaaagca taactaaagc gtctgtagac
    11521 gctaaaccaa ggcaaagtga atatagcggt agttttgatg acgcagagga caatatgatt
    11581 aaaagtatgg aaaaatttga tttttggcaa aatatagaaa aagagattat tgtattatta
    11641 aaaaattctc atgaagatta tgaggctaaa actcccatta taaatcccaa tgcaggtctt
    11701 attatagtaa ctggaacaaa ttctcagtta aaaagtgtga aaaattattt gcaaaaacta
    11761 gaaaatcgtc ttaaaaaaca agttattatc gatgttagca tacttgctgt gagtttaaat
    11821 gaaaaccatt ctagtgggat taattggcaa aattttaata taggtttaaa ttcgcaagta
    11881 aataatgaaa attcttttat tcagtttcaa aatgggcaag gttttgttaa gaatttgggt
    11941 ttaagggcga atttaaattt tgattctatt attaactttc tttctcaaaa tggaaaaact
    12001 agcgtgcttt ctaatccaaa gcttatggct ttaaataacc aacaagccat tatttctgta
    12061 ggcgatacta taaattatca agttaaagaa agttctaaag gcactgaaaa tgggactact
    12121 gttagtgaaa gttataacaa ttattctatt tttgtaggca ttttactcaa tatcttgcct
    12181 gaaatttctg atgatggaaa aataatgctc aggattaatc caagcttaag tgattttaag
    12241 tatccagaag ataataaacg acaaaaagaa ccaagaacta ttgctcctga taccatacaa
    12301 aaaaagcttt ctagtgttgt gcaagtagag aataatcaaa ctttaatttt aggtggattg
    12361 atttctcacg ataaatctaa tgagaaaaat tctatcaatt ttctatcaaa aattccaatc
    12421 ctaggttctt tgtttaaagg agaagtttta aattctaaag caaccgaaat tgtttttatt
    12481 atcactccaa gtatagtaga tagtgtaaat gctccaagtc ttaaagatct aggatttaag
    12541 cattatgagt aaaattattc catttagaga agaaattttt catcaaatca atcaaatttt
    12601 agaaagccaa aaagctttta tttttttatg gggaaaaagt ggtagtggta aaagtgtatt
    12661 gttgcaaaga ttagcaaaaa aatataatgt tgattttatt aatgaaaatt ttaaagatca
    12721 gagtttctta aaagaaaaaa ttgagttttt gatttcacaa ggtcagagtt taatcattct
    12781 tgatgaagtg ggaatgtatg attatgcaat gctagaaagc atcaggattt atagtgattc
    12841 tataagtttt gttttaagtt ctcataaaaa gttaaatata cttaaaaaag agcattttaa
    12901 aagtcgttta agtgcttgtt ttaaattaaa aaatattagt cttttagaac ttgatgatta
    12961 tattaaattg aaatttggaa tgaatttttc aaataaatgt cttaagtttt tacaaaaa
//
LOCUS       DARGEM010000040        12880 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.040, whole genome shotgun sequence.
ACCESSION   DARGEM010000040 DARGEM010000000
VERSION     DARGEM010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.040"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(115..993)
                     /gene="rfbA"
                     /locus_tag="SFZ78_000865"
     CDS             complement(115..993)
                     /gene="rfbA"
                     /locus_tag="SFZ78_000865"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEG8211748.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPMSVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHVKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNYVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
     gene            complement(1004..1705)
                     /locus_tag="SFZ78_000866"
     CDS             complement(1004..1705)
                     /locus_tag="SFZ78_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8211749.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KTFKNVKIFHQDWLGFGKQKQFGVEKANNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGETITKMGLYPDYNIRLFHKKYAKFNEREVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            complement(1702..2580)
                     /gene="htrB"
                     /locus_tag="SFZ78_000867"
     CDS             complement(1702..2580)
                     /gene="htrB"
                     /locus_tag="SFZ78_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG8211750.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPDCILHFLALIVARIAFHLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEEGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            complement(2570..3598)
                     /gene="waaC"
                     /locus_tag="SFZ78_000868"
     CDS             complement(2570..3598)
                     /gene="waaC"
                     /locus_tag="SFZ78_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG8211751.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKIMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIINTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3665..4459
                     /locus_tag="SFZ78_000869"
     CDS             3665..4459
                     /locus_tag="SFZ78_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8211752.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVQS"
     gene            4518..5504
                     /gene="galE"
                     /locus_tag="SFZ78_000870"
     CDS             4518..5504
                     /gene="galE"
                     /locus_tag="SFZ78_000870"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG8211753.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLVPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGACIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            5498..7192
                     /gene="pglK"
                     /locus_tag="SFZ78_000871"
     CDS             5498..7192
                     /gene="pglK"
                     /locus_tag="SFZ78_000871"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8211754.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKIYNLGFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            7189..8268
                     /gene="pglH"
                     /locus_tag="SFZ78_000872"
     CDS             7189..8268
                     /gene="pglH"
                     /locus_tag="SFZ78_000872"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG8211755.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNVLCKEHEVSIIKFHAGESF
                     YKLENKVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKTLYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            8261..9190
                     /gene="pglI"
                     /locus_tag="SFZ78_000873"
     CDS             8261..9190
                     /gene="pglI"
                     /locus_tag="SFZ78_000873"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG8211756.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMVKFSGEFFSVF
                     KKSLLENQRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            9178..10275
                     /gene="pglJ"
                     /locus_tag="SFZ78_000874"
     CDS             9178..10275
                     /gene="pglJ"
                     /locus_tag="SFZ78_000874"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8211757.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALI
                     ARMFGNKTRLVINECTTPSVMYVKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTGLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            10279..12420
                     /gene="pglB"
                     /locus_tag="SFZ78_000875"
     CDS             10279..12420
                     /gene="pglB"
                     /locus_tag="SFZ78_000875"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8211758.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVLCRFYWIWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            12430..>12880
                     /gene="pglA"
                     /locus_tag="SFZ78_000876"
     CDS             12430..>12880
                     /gene="pglA"
                     /locus_tag="SFZ78_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8211759.1"
                     /translation="MRIGFLSHAGASIYHFRTPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYELSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFFINNLYKLSFKFAHQFIFV"
BASE COUNT         4294 a         1600 c         2172 g         4814 t
ORIGIN      
        1 tagcatatgt taaaaaatct aaatttataa ttttagcatc tggatttttc tcaaaaaaat
       61 ataataaaaa attactacct ataaaaccag ctccgccagt aactaaaata tacattattt
      121 tccttgacta agtattttat ataaatattg accataatta ctttttgaaa gtaacaatgc
      181 tcttttttct agggtttcat tatctatcca gttgttattg taggctattt cttctaagca
      241 ggcaatctta taaccctgcc ttaattctat ggtttgcaca aacgaactag cttctataag
      301 actatcgtga gttcctgtgt caatccaagc aaaacctctt cctaaatgtt gtgattttag
      361 cttatttaac cttaaatatt ctatatttac atctgttatt tcaagttctc ctcttgcact
      421 tggttttata ttttttgcaa tatctatagc gtcattatta taaaaatata aaccagttgc
      481 cacatagttg ctttttggat ttttgggttt ttcttctagg cttaaaacat ttccattttg
      541 atccatttct accactccaa atctttctgg atcttttaca tgataagaaa aaatactagc
      601 aaaccctttt tttaagtcat cttttgcatt ttccaaaata tcactaaagc cttgtccgta
      661 aaaaatatta tctcctaaaa ttaatgcaat atcatcattt tgaataaaat cttgcgccaa
      721 aataagtcct tgcgctaaac cttctggacg ctcttgaatt ttatactgaa tttgcattcc
      781 aagaaaagaa ccatctttga atagctcttt aaatctatca atatcttttg gagtagaaat
      841 aatcaaaact tctttaattt ttgcaagcat taaaacagac ataggataat aaatcattgg
      901 tttatcgtat ataggtaaaa gttgcttgca taaagttaat gtgctaggat aaagcctagt
      961 tccactacct ccagctaaaa taatgccttt cattgttgca ctcctattta atatatttcc
     1021 aaaaagtata ttgtgcataa agctttgcta tgataaaacc tcttttgcct tctaaaaaac
     1081 ctaattttac aaaataaagt ttaaaaaaag tccaataagg atttattaaa gctttaagaa
     1141 ggttattttt tttaggattt agacttgagt atttgttttg tttatctata aattgctcga
     1201 tattttcata agcataatgt aaaaaatgat gttttaattt ccctattttt tcttgacaga
     1261 ttatgctttc gtgaacttct ctttcattaa atttggcata ttttttatga aatagtctta
     1321 tgttataatc aggatatagc cccatttttg ttattgtttc tccaaagaaa aaatttaatc
     1381 ttgctacttt gtatgcttta aatgatggat ttttaattat ttgcaatact tcctctttta
     1441 attcttcagt aaaaacttca tcactatcta aaacaaatat ccaatcatta tttgcttttt
     1501 caactccaaa ttgtttttgc tttccaaaac caagccaatc ttgatggaaa attttcacgt
     1561 ttttaaaagt ttttgctatt attaaactat catctgtgct tccgctatct attaaaataa
     1621 tttcattggc aaaattaaca ctttgtaata cttcttgaag atatttttgg ctattaaaag
     1681 ttagtattac tattgaaata ttcatgagta tattccttga ttataactag caaagcgtct
     1741 atgaaaaaaa aagtattccc aaggtctttt tttaatcatt tcttcgcaac tttgtgcttg
     1801 ataaagtgtc agttcttcta aacttgcatt ttgagaatct tttgctttaa aaaactctat
     1861 gcaaaattta ccctcttctt tataggcata aacagggatg atcaaagcat tgcttctttg
     1921 tgcgataagg cttgctccca tttgataatt cacttctttg ttaaaaaatt ttaatcttac
     1981 gctttcgttt tctacgcagt cttgatcagt taaaattccc aaagttctcc ctttttttag
     2041 agcgcttagc atttgtctta tgccgccttt tttgtcgata agttctatgt caaattgggt
     2101 gcgactttgg cttaaaattt catacataat ttcacttttt aactttttcc ctactataga
     2161 aattgcacca tatttagctg cataagcaag gcttaaaatt tcccagtttc catagtgtgc
     2221 agttgtgaag ataataggac gctttaaagc tagagcatct ataagaaaat tttcattaat
     2281 gaaatttact ttattgagaa ttttttcttt agtggtgttt tgattttgca aacaatcaat
     2341 cccaaattga gcaaaatttt cataaatttt taaagacaat ttatcgcgtt ctttttgagt
     2401 gtattgagga aaacagattt gcaaatttgt atcgatgatt ttgcggtgtt ttttgttaag
     2461 atgaaaagcg attcttgcta caatcaaagc taaaaaatgc aagatacaat caggcataaa
     2521 agtaacaaaa aatttcaaaa tataataaag actaagatat attctatcgc tatttttcat
     2581 taagtaagcc tttggcaagt ttgaagatat cttcttcttc tatacgcgtg atacaaaaat
     2641 cacttttatc gatatgcttg gcattttgaa tttttttacc tgtattaatg attttattga
     2701 tatgagtttg aaaagcattg cggtagcttg gtgttgcacc aaaaatcgta atagatgctt
     2761 tatttaaagc aaaagctaaa tgtgttggac cgctatcatt tcctatgata agatccatta
     2821 tttttgtaaa agccattagc tcttcaagat taaattttgg cgctaattct atatgtgttt
     2881 catcaatacc actaagattt aaaacctctt tagcaaattc gtattctttt acatttcccc
     2941 aagcgagcca aatttttgtt tgttgaaatt cattgattaa aagtttgcaa agtatagcaa
     3001 gtttggtttt aggatagatt ttattttcta cacttgagcc cacatgtatg agtatgtttt
     3061 tttcgttttt gtcgagtttg agtttattat ttaagagttg ttttaaattt tcatctacgc
     3121 taaaaatatc ttgtttaaag gctaaatttt tgacattaaa atcagtattt aacataaagg
     3181 aggtaagact taagtatctt acaaatacat tttcattgta atctaactca agtttttggt
     3241 tgtagaaatt atgagcaaaa ctttctttaa gactattttt atcaaaacca aaattatttc
     3301 tacttaaaat tcgacttaca atagcagatt ttatgagccc ttgtagatct attactgcat
     3361 tatagttgtt ttttcttgct ttaagaagaa tttttaggct ttttaaaatt tttttgtctt
     3421 ttaagggcag ggcatagagt ttgtctatta aaggatggtt tttaagtatg ccttcaaatt
     3481 tttcatctac aaaccaatga atttctatat cttttttaaa atttttgata aattgcaaaa
     3541 ccacggcact ttgtataata tcaccaagtg ctgacaaacg aacaattgct attttcatta
     3601 aaagcctaat attttaaaat tttttgctat gattttagcg aaattattta aaaaaaggtt
     3661 aaaaatggca aaaaatgaag gttatatttg tgtttttgat tgtgagagtg tgccagatgt
     3721 tgagcttatc cgcaaaactt tgggttttga aggaagtgat ttagaggtaa gtttaaaagc
     3781 acttcagtgg caaaaagaac aaagtgggag tgagtttttg cctttgcctt atcataaaat
     3841 tatcagtatt tgtgcggttt taagtgataa ttttggaaaa tttatcaaag taaataaaat
     3901 tgatgggcaa aatgaaaaag aaatgattga gaattttttc aattttatag aaaattatga
     3961 gccaaaatta gtcagcttta atggtaaaaa tttcgatatg cctgttcttg ttttaagggc
     4021 tttaaaatac aatttaaaag cagcaactta tttagatact caaagcgata aatggaataa
     4081 ttataaaaca agattttcag aattaaaaca ttgtgattta ttagaatcct taggatctaa
     4141 tgggcgtgga ataaagcttg atacactttg ctctatggtg ggtttgccag gaaaatatga
     4201 tgtgcatggc gatgaggtga tgaaactttt ttatgaaaat gaacttgaaa aaattcacga
     4261 atattgtgaa agtgatgttt taaacaccta tatgcttttt ttaaaatatg aacttattaa
     4321 agctaatgtt agtgaagaag attatgttga ttttctttct tatatgagag attttttgcg
     4381 tgaaaaaaaa tcagatcgtt cctatacaga agtttttgca aaagcttgtg agagtgaaat
     4441 ttcaaaagtt caatcttaag tatttaagaa aatatattaa aatttatttt tgacattttt
     4501 taaaaaaagg aatgatgatg aaaattctta ttagcggtgg tgcaggttat ataggttctc
     4561 atactttaag acaattttta aaaacagatc atgaaatttg tgttttagat aatctttcta
     4621 agggttctaa aatcgcaata gaagatttgc aaaaaataag agcttttaaa tttttcgaac
     4681 aagatttaag tgattttcaa ggcgtaaaag cattgtttga gagagaaaaa tttgacgcta
     4741 ttgtgcattt tgcagcaagc attgaagttt ttgaaagtat gcaaaatcct ttaaaatatt
     4801 atatgaacaa cactgttaat acgacaaatc tcatcgaaac ttgtttgcaa actggagtaa
     4861 ataaatttat attttcttca acggcagcca cttatggcga accacaaact cctgttgtga
     4921 gcgaaacaag ccctttggta cctattaatc cttatgggcg tagtaagctt atgagtgaag
     4981 aggttttgcg tgatgcaagt atggcaaatc ctgaatttaa gcattgtatt ttaagatatt
     5041 ttaatgttgc aggtgcttgt atggattata ctttaggaca acgctatcca aaagcaacat
     5101 tactcataaa agttgcagct gaatgtgccg caggaaaacg tgataaactt ttcatatttg
     5161 gcgatgatta tgatacaaaa gatggtgctt gcataagaga ttttatccat gtagatgata
     5221 tttcaagtgc gcatttagcg gctttggatt atttacaaga gaatgaaagt aatgttttta
     5281 atgtaggtta tgggcatggt tttagtgtca aagaagtgat tgaagcgatg aaaaaagtta
     5341 gtggagtgga ttttaaagta gaacttgccc cacgccgtgc aggtgatcct agtgtgttga
     5401 tttctgatgc aagtaaaatc agaaatctta cttcttggca gcctaaatat gatgatttag
     5461 agcttatttg caaatctgct tttgattggg aaaaacagtg ttaaaaaaac ttttttttat
     5521 tttaagtaag gaagataaaa attttttatt ttttttgctt gttttttcag tatttgtttc
     5581 ttttatagaa acttttgcga tttctttggt aatgcctttt atcactttgg ccagtgattt
     5641 ttcttatttt gatcgtaata aatatttaat cagcttaaaa gaatatctta atatccctgt
     5701 ttttgaaatc attgtttatt ttggggtggg gcttattgtt ttttatgtgt ttagagcttt
     5761 gttaaatgcg tattattttc atcttttagc aagattttct aaagggcgtt atcatgtgat
     5821 cgcttataag gttttttcta aatttttaaa tattaattat gaaaaattta ctcaaaaaaa
     5881 tcaatctgaa attttaaagt ccattacagg ggaagtttat aatctaagca ctatgatttc
     5941 atcatttttg cttttgatga gtgaaatttt tgtagtgctt ttgctttatg ctttaatgct
     6001 tttgattaat tataaaatca ctttattttt aagtattttt atggtgttaa atgcctttat
     6061 tttagtgaaa attttaagcc ctatcattaa aaaagcagga gtaagacgcg aagaagcgat
     6121 gaaaaatttc tttgaaattt taaatacaaa tttaaataat ttcaaattta ttaagcttaa
     6181 aaccaaagaa gatggagtat taagtctttt taaagcgcaa agtgaagctt tttctaaagc
     6241 aaatattacc aacgaaagtg tagctgcggt gcctagaatt tatcttgaag gaataggttt
     6301 ttgtgtactt gtttttatcg tggtattttt ggtgttgaaa aatgaaagtg atatttcagg
     6361 tattttatcc acgatttcta tttttgtttt agcactttat cgcttaatgc caagtgcaaa
     6421 tcgtattatt acaagttatc atgatttgct ttattatcat tcttctttgg atattattta
     6481 tcaaaattta agacaagaag aagaaaattt gggcgaggaa aaattaagct ttaatcaaga
     6541 gcttaaaatt tacaaccttg gctttggtta tgagggaaaa aaatatttat ttaaaaatct
     6601 taacttaaac attaaaaaag gcgaaaaaat cgcttttata ggggagagtg gttgcggaaa
     6661 aagtacctta gtagatctta tcataggact tttaaaacca aaagaagggc aaattttaat
     6721 tgatgagcaa gaattaaatg caaataatac aaaaaattat cgccaaaaaa taggctatat
     6781 cccgcaaaat atctatcttt ttaatgacag tatagctaaa aatatcactt ttggagatgc
     6841 ggttgatgaa gaaaaactta atagggttat caaacaagca aatttagagc attttataaa
     6901 aaatttatct caaggagtgc aaacaaaagt gggtgatggg gggagtaatt taagcggggg
     6961 acaaaaacaa cgcatagcta tagcaagagc tttgtattta gagcctgaaa ttttagtgct
     7021 tgatgaagca acttctgctc ttgatactca aagtgaagca aaaatcatgg atgaaattta
     7081 taaaatttct aaagataaaa ccatgattat tatcgcacat cgcctttcta cgataacgca
     7141 atgtgataag gtttatcgtt tagaacacgg taagcttaaa gaggagaaat gatgaaaata
     7201 agctttatta tcgcaacttt aaattcagga ggcgctgagc gtgttttagt aaccttagtt
     7261 aatgtacttt gtaaagagca tgaagtaagt attattaaat ttcatgcagg agaatctttt
     7321 tataagcttg aaaataaagt taaagttaca agtttagaac aatttagatt tgatacgctt
     7381 tatcataaaa tcgcaagtcg ttttaagaaa ttttttgctt taagaaaggc tttgaaagaa
     7441 agtaaggctg atgtttttat ttcttttttg gatacgacta atattgcttg tattgctgcg
     7501 aaaatagggt ttaaaactcc actcattata agtgagcata gcaatgaagc gtatttaaaa
     7561 cctaaaattt ggcgtttttt aagaagggta agctatcctt tttgtgatgc tttaagtgtg
     7621 cttggaagca gtgataaggt gtattatgaa agatttgtaa aaagggttag gcttttatta
     7681 aacccttgtc attttagcga tgaaattcct tttgattcta gttttgaaaa ggaaaatttg
     7741 gttcttttta tagggcgttt agatcacaac aaaaaccctg caatgttttt aaaagctata
     7801 gcgcatttgg ataaaaattt gcaagaaaat tataaatttg ttatagcagg agatggagag
     7861 ttaaggcaag aacttgaata caaggtaaaa tctttaggaa taaaagttga ttttttagga
     7921 cgagttgaaa atgtcaagac tctttatgaa aaagcaaaag tgctttgtct ttgttctttt
     7981 gtagagggtt tgccaacggt tttaattgaa agtttgtatt ttgaggtttg tagaatttca
     8041 agttcttatt ataatggtgc taaggattta atcaaagata atcatgatgg gcttttgata
     8101 ggttgtgatg atgaaatagc acttgctaaa aaacttgaac ttgttttaaa taatgaaaat
     8161 tttagaaaag aacttgtaaa taatgccaaa caaaggtgta aagactttga aatttctcat
     8221 atcaaagaag aatggcttaa gcttatagct gaggttaaaa atgcctaaac tttctgttat
     8281 agtaccaact tttaatcgtc aagttttact agaaaaggct attaaaagca tacaaaatca
     8341 agattttaaa gatttagaaa ttattgtaag cgatgataat tctagcgatg atactaaaag
     8401 tgtggtgcaa aatttacaaa aagatgatga tcgcattaag tattttttaa atcaaaatta
     8461 caaacaaggc ccaaatggca ataaaaataa tggcttagat caagcaagtg gcgagtttgt
     8521 aactttttta gatgatgatg atgagctttt atctggggct ttaagtacct tgatgcaaaa
     8581 agcaaatgag ggttatgctc atgtttttgg aaattgtttg atagaaaaag aaggaaattt
     8641 aagcaaggaa tttagcggta agggcttgga aaaagatagt gaaatttcta aaaaagattt
     8701 tttaatggtt aaatttagcg gagagttttt ttctgttttt aaaaaatctc tacttgaaaa
     8761 ccagcgtttt aatgaagaat tttatggcaa tgaagccacg ctttgggtaa atttatacaa
     8821 ggaaaaaagt ttttatatcc ataaggcttt taggatttat aggattttta ggcaagatag
     8881 cgtgacttta ggggcgagta aaaatgctca tagggtatat ttgggatatt tagagcttgc
     8941 taaaatttta gaaaatgaac ttagaatgag taaggataaa gattataaaa aaacttgtgc
     9001 gagttattat aaaatggcag cttattatgc aaaacttgca aaaaattata aagctcttta
     9061 taagtgtttg tttaaaagct tgagtataaa aatcaacgct cctgctttga tattactcat
     9121 tttaagtata attccaaata atatgattga aaaattatca aaaattcggg tggctttatg
     9181 caaaaattag gcatttttat ttattcttta ggaagtggtg gtgctgaaag agttgtggcg
     9241 actttattgc ctattttaag tttgaaattt gaagtgcatt tgatcttgat gaatgataaa
     9301 atttcttatg aaattccaga gtgtcaaatt cattttttag aatgttcaaa acctagtgaa
     9361 aatcctattt tgaaattttt aaaactacct tttttggctt taaaatataa aaaactttgc
     9421 agaaatttgg gcattgatac agaatttgtt tttttaaatc gacctaatta tatagcctta
     9481 atagcaagaa tgtttggaaa caaaactcgc cttgtgatca atgaatgcac tacgccaagt
     9541 gtgatgtatg taaaaaataa ttttaattct ttggcaaata aatttttaat ttctttgctt
     9601 tacccaaaag ctgatttaat cttgcctaat tctaaaggaa atttagaaga tttagtgcaa
     9661 aattttagta taaatccaaa aaaatgtgaa attttataca atgccatcga tttagaaaac
     9721 atagggcaaa aagcccttga agacatagct ttaaaagata aatttatttt aagtgtaggc
     9781 aggcttgata aaggtaaaaa tcatgcttta ttaattcgtg cttatgcgag attgaaaaca
     9841 ggtttaaagc ttgtgatttt aggtgaaggt gtgcttaaag atgagctttt agctttgatt
     9901 aaagaattaa atttggaaga aaaggttttg cttttaggat ttgataataa tccttataaa
     9961 tacatggcta aatgcgaatt ttttgctttt gcttctgtgt ttgaaggttt ttcaaatgtt
    10021 ttaatcgaaa gtttggcttg ttcttgtgcg gtggtttgca ctgatcataa aagtggtgca
    10081 agagagcttt ttggcgatga tgaatttgga cttttagtag aagtagataa tgaaaactct
    10141 atgtttcagg gtttaaaaac tatgcttgaa gacgataaat taagaaaagc gtataaaaac
    10201 aaagctaaaa ctagggctaa agcctttgat aaagtaaaaa ttgcacgcga tgctttgaaa
    10261 tatttattag gataaaagat gttgaaaaaa gagtatttaa aaaaccctta tttagttttg
    10321 tttgcgatga ttatattagc ttatgttttt agtgtattgt gtagatttta ctggatttgg
    10381 tgggcaagtg agtttaatga gtattttttc aataatcaat taatgatcat ttcaaacgat
    10441 ggctatgcct ttgctgaggg cgcaagagat atgatagcag gttttcatca gcctaatgat
    10501 ttgagttatt atggatcttc tttatctacg cttacttatt ggctttataa aatcacacct
    10561 ttttcttttg aaagtatcat tttatatatg agtacttttt tatcttcttt ggtggtgatt
    10621 cctattattt tactagctaa tgaatacaaa cgtcctttaa tgggctttgt agctgctctt
    10681 ttagcaagtg tagcaaacag ttattataat cgcactatga gtgggtatta tgatacggat
    10741 atgctggtaa ttgttttacc tatgtttatt ttatttttta tggtaagaat gattttaaaa
    10801 aaagactttt tttcattgat tgccttgcca ttatttatag ggatttatct ttggtggtat
    10861 ccttcaagtt atactttaaa tgtagcttta attggacttt ttttaattta tacacttatt
    10921 tttcatagaa aagaaaagat tttttatata gctgtgattt tgtcttctct tactctttca
    10981 aatatagcat ggttttatca aagtgccatt atagtaatac tttttgcttt atttgcttta
    11041 gagcaaaaac gcttaaattt tatgattata ggaattttag gtagtgcaac tttgatattt
    11101 ttgattttaa gcggtggggt tgatcccata ctttatcagc ttaaatttta tatttttaga
    11161 agtgatgaaa gtgcgaattt aacacagggc tttatgtatt ttaatgttaa tcaaaccata
    11221 caagaagttg aaaatgtaga ttttagcgaa tttatgcgaa gaattagtgg tagtgaaatt
    11281 gttttcttgt tttctttgtt tggttttgta tggcttttga gaaaacataa aagtatgatt
    11341 atggctttac ctatattggt gcttgggttt ttagccttaa aaggggggct tagatttacc
    11401 atttattctg tacctgtaat ggctttagga tttggttttt tattgagcga gtttaaggct
    11461 atattggtta aaaaatatag ccaattaact tcaaatgttt gtattgtttt tgcaactatt
    11521 ttgactttag ctccagtatt tatccatatt tacaactata aagcgccaac agttttttct
    11581 caaaatgaag catcattatt aaatcaatta aaaaatatag ccaatagaga agattatgtg
    11641 gtaacttggt gggattatgg ttatcctgtg cgttattata gcgatgtgaa aactttagta
    11701 gatggtggaa agcatttagg taaggataat tttttccctt cttttgcttt aagcaaagat
    11761 gaacaagctg cggctaatat ggcaagactt agtgtagaat atacagaaaa aagcttttat
    11821 gctccgcaaa atgatatttt aaaatcagac attttacaag ccatgatgaa agattataat
    11881 caaagcaatg tggatttatt tctagcttca ttatcaaaac ctgattttaa aatcgataca
    11941 ccaaaaactc gtgatattta tctttatatg cccgctagaa tgtctttgat tttttctacg
    12001 gtggctagtt tttcttttat taatttagat acaggagttt tggataaacc ttttaccttt
    12061 agcacagctt atccacttga tgttaaaaat ggagaaattt atcttagcaa cggagtggtt
    12121 ttaagcgatg attttagaag ttttaaaata ggtgataatg tggtttctgt aaatagtatc
    12181 gtagagatta attctattaa acaaggtgaa tacaaaatca ctccaattga tgataaggct
    12241 cagttttata ttttttattt aaaggatagt gctattcctt acgcacaatt tattttaatg
    12301 gataaaacca tgtttaatag tgcttatgtg caaatgtttt ttttaggaaa ttatgataag
    12361 aatttatttg acttggtgat taattctaga gatgctaagg tttttaaact taaaatttaa
    12421 gggttgaaaa tgagaatagg atttttatca catgcaggag caagtattta tcattttaga
    12481 acgcctatta taaaagcatt aaaagataga aaagacgaag tttttgttat agtgccacaa
    12541 gatgaataca cacaaaaact tagagatctt ggcttaaaag taattgttta cgagctttca
    12601 agagctagtt taaatccttt tgtggtttta aagaattttt tttatcttgc taaggttttg
    12661 aaaaatttaa atcttgatct tattcaaagt gcggcacaca aaagcaatac ctttggaatt
    12721 ttagcagcaa aatgggcaaa aattccttat cgttttgctt tggtagaagg cttgggatct
    12781 ttttatatag atcaaggttt taaggcaaat ttagtgcgtt tttttattaa taatctttat
    12841 aaattaagtt ttaaatttgc acaccaattt atttttgtca
//
LOCUS       DARGEM010000041        12826 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.041, whole genome shotgun sequence.
ACCESSION   DARGEM010000041 DARGEM010000000
VERSION     DARGEM010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.041"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            92..949
                     /gene="cheP"
                     /locus_tag="SFZ78_000877"
     CDS             92..949
                     /gene="cheP"
                     /locus_tag="SFZ78_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG8211760.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMMAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKSENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            977..1456
                     /gene="cheQ"
                     /locus_tag="SFZ78_000878"
     CDS             977..1456
                     /gene="cheQ"
                     /locus_tag="SFZ78_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG8211761.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1425..2735)
                     /locus_tag="SFZ78_000879"
     CDS             complement(1425..2735)
                     /locus_tag="SFZ78_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211762.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2719..2895)
                     /locus_tag="SFZ78_000880"
     CDS             complement(2719..2895)
                     /locus_tag="SFZ78_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8211763.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            2988..3461
                     /gene="moaC"
                     /locus_tag="SFZ78_000881"
     CDS             2988..3461
                     /gene="moaC"
                     /locus_tag="SFZ78_000881"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG8211764.1"
                     /translation="MKLSHLDEKNYPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            3439..3702
                     /locus_tag="SFZ78_000882"
     CDS             3439..3702
                     /locus_tag="SFZ78_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG8211765.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            3692..4852
                     /locus_tag="SFZ78_000883"
     CDS             3692..4852
                     /locus_tag="SFZ78_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211766.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVAKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(4871..5629)
                     /gene="xth"
                     /locus_tag="SFZ78_000884"
     CDS             complement(4871..5629)
                     /gene="xth"
                     /locus_tag="SFZ78_000884"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG8211767.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            5747..7285
                     /gene="eptC"
                     /locus_tag="SFZ78_000885"
     CDS             5747..7285
                     /gene="eptC"
                     /locus_tag="SFZ78_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG8211768.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFAIVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLNKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNILVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDNEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            7282..7638
                     /locus_tag="SFZ78_000886"
     CDS             7282..7638
                     /locus_tag="SFZ78_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG8211769.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIICSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWSFILYSIYL"
     gene            7635..7862
                     /locus_tag="SFZ78_000887"
     CDS             7635..7862
                     /locus_tag="SFZ78_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8211770.1"
                     /translation="MKFENLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            7871..8866
                     /gene="pyrC"
                     /locus_tag="SFZ78_000888"
     CDS             7871..8866
                     /gene="pyrC"
                     /locus_tag="SFZ78_000888"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG8211771.1"
                     /translation="MKLKNPLDMHLHLRDESMLALVAPFSAKDFKAGVIMPNLITPLT
                     EIDVLKAYKERILKACKNEDFTPLMTLFFKDYDEQFLEKAKDELFAIKLYPAGITTNS
                     DNGISSFDIEKLKPTLNTMSELNIPLLVHGETNDFVMDREANFAKIYEKLAKNFPKLK
                     IVMEHITTKVLCDLLKDYENLYATITLHHLMITLDDVVGGKMDPHLFCKPIAKRYEDK
                     DALCELAFSGYEKAMFGSDSAPHPLHTKECCGCAAGVFSAPVILPVLVELFEKHSNET
                     NLQKFISDNACKIHNLKFEKDKIVILEKQEWQVAQKYGDVVPFMAGKTLNFKVAN"
     gene            8876..12028
                     /locus_tag="SFZ78_000889"
     CDS             8876..12028
                     /locus_tag="SFZ78_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEG8211772.1"
                     /translation="MLKAYLENIKDISTNDKEHTHRTALQNLLQAIKDNQDKQNKISI
                     KQEPNNDKEGRGAPDFLITKDFLTLGYIENKRVNANLDNIITSDQILKYTKLSPNIIL
                     TDYLRFILLSLNDKNEIIICKEVKICSLDEIKSVIKNQSLLDTKTQELNELFSIFFSK
                     IPNPINSALDFANHLSLRTRILKDELLLSSKNETLLSLFNTFKETLYKELSYEEFCDS
                     FAQTLTYSLFLAKLNNDTAKEIDLNNAKKFIPKSFPLIRSMSGFLDDSFENLENIKWL
                     LEEIINIINHIDITSIIKELNKTGEKDLFNRPTILSTHKDPYLHFYETFLASYDPKLR
                     EVRGVYYTPAPVVIFIINAIDEILKQDFNHKKGLSEALDKNITLLDFATGTGTFLLEA
                     FRKALEPISKNSVNYNPKVLIDKFCGFEFLIAPYTIAHLKISQSFKEEFNSPLNDDES
                     LKIALTNTLYSKSISKEQNDQNTLFTLIDLTKEFKKAQKIKEEQILIITGNPPYSGAS
                     SNKGLYEDEIKISYGLEPSKANLNNEQKKWISSYFKEKSKQNTSTFKAIYEKHKLENE
                     KNSKVMLDDYVKFIRFAQSKIDSQESGIFAFISNNSFLDNPTFRGMRYSLMQSFDKIY
                     ILNLHGDTRKKEKAPDGSKDDNVFDIMQGVSINIFIKQNSKAKNTNIYYHDLYGKRKD
                     KYEFLYENDLNSIKWTLVKNNEPFYLFLPQNNDLLEEYNKGISVKDIFMLSSVGIASS
                     KDAILISTNNKKLEQQVYNFYNEFDKKYIKEIAYKPFDTQKIYYDIKKVERPRIDIME
                     HFLGYENIGLIYDRGTNLKEISNLFISSKVIDKHLVGANSYVSPLYLYPTTRSKKFLK
                     KENPNFNEENFTSKIENFKESFRTFIDELYKEKFSPEDILGYIYAVLFHKIYREKYLD
                     FLKIDFPKIPFTKDKNTFKNLSKLGLKLVNLHLLKNDELDFNVGEALFKDIKNKNFKI
                     QKIKYNKDVKELFINESLYFNKVSPEIYEFKIGGYAVLDKYLKSHKEEDIDHKHFTLI
                     IQTLDETLKIQDEISKINLS"
     gene            complement(12034..12747)
                     /locus_tag="SFZ78_000890"
     CDS             complement(12034..12747)
                     /locus_tag="SFZ78_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8211773.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYKAFLNLASKKVYLGWASRRKSSFLDPIFEHFNTHFKG
                     FYESDLQGFLNTQNIPYEYEIFNETRVVKRDKQSAIENALWHLSMNGINTNKQELESF
                     VKDEVEEIIEAKIKLLIIS"
BASE COUNT         4859 a         1737 c         1851 g         4379 t
ORIGIN      
        1 ttatacctta agtcataaaa aatgcaataa gtaaattaaa atttagatat aattgcaaat
       61 tataataata ttaattaagg ataaattaaa tatgattgga gatatgaatg agcttttatt
      121 aaaaagcgtt gaagtattgc cacctttacc tgatactgta agtaaattaa gaaaatatgt
      181 gagcgaggct aattcaaata tagaaactat gaaagttgct gaaatcattt caagcgatcc
      241 gttgatgatg gctaagcttt tgcaattagc aaattctcct tattatggtt ttacaagaga
      301 aattacaacc ataaatcaag tgattacttt attaggcgtt ggtaatatca tcaatatagt
      361 tatggctgac tccattagag ataattttaa aatagacgtt tcaccttatg gtttaaatac
      421 tcaaaatttt ttaaaaacgt gcaatgaaga ggcaactttt atcgcaaatt ggcttaatga
      481 tgaagataaa aaactttctc atcttttagt tccttgtgca atgcttttaa ggcttggtat
      541 tgttattttt tcaaattttc ttatacaaaa tcataaggat aaggattttt tagctttttt
      601 aaataaaagt gaaaatcttg ctttagcgga gaatgaattt ttaggcgtag atcatatttc
      661 tttcttggga tttttgttac atcgttggaa ttttgatgat gttttgattg aaagtatatg
      721 ttttgttcgc actcctcatg ctgctcgcga aaaagtgaaa aaatccgctt atgctttagc
      781 aataacagat catctttttg ctccgcatga tggctcttct ccatttaacg caaaagctgc
      841 agttgcttta cttaaagagg caaaaactca aggaattaat tttgatttaa acaatctttt
      901 atctaagctt cctaacaaag ctaaggaaaa tttaaacaaa gaagattaaa gagccttttt
      961 aaggctctaa attgtagtga tgaaaagttt aatcttacct cctaatgaat ttttagatca
     1021 ctatatttta aacgctgaat ttcatcgttt tgctggaatt tcaaaaaatg cttataaatt
     1081 ttggaaaaat gtagaaatag gtagatatca aggaacaaga attatatttt tgcatagaaa
     1141 ttgcatttta gaaaaacatc agcaagcttt aaggcaatgt agtggtttaa atggttttgt
     1201 attggcaagt gctttttgtt cttttactgg attagccccc tctcatttgg tggaaaaaaa
     1261 taattcttct atttacaaac ttttagagct taaggagatt tgtgggatta aatttgttaa
     1321 tttaaaaaaa ttttatgatt ttttagggct aaattatcat cagcatattt atatagaaaa
     1381 atgccatttt tttagcccag ctccttttga aaagcgtatt aaaatcactg agagtatgtg
     1441 cgttgggtat tattaagata agaaaaaata aatgcacata gcaaagctat aatagccaaa
     1501 aagaaaacat aaagtcccaa agaaaaacgc caaaaattac ttaaattatt taaggcaaaa
     1561 ctatgcaaga aaaaagcaag ttgcggagtt aaacctccag ctatagcata agcaatatta
     1621 tatgaaaaag aaagtcctga aaatttaatt tttgcatcaa atacttcact cattattaaa
     1681 gggcaaaaat tcatcactcc gctaaaaaaa catacaagta aatataagca agctactagg
     1741 ttaaaatcag cattttgtct atataaagta ttaaaataaa gcaagcttgc aattccaaaa
     1801 aaaacactaa aaaatacaca agatttaata acgcctattt tatccgctaa aattccactt
     1861 ataatacacc ctaggcaaat aagcaaaatt ccacctattt gaagataggt ttgtatagaa
     1921 gtattaattt gaagtatttt tgccatataa ctaggcataa gcaaaatcat tacaacaata
     1981 caacctgtca aaacccaagt aatcatcata gaaagaacaa ttcccatttt agctttttta
     2041 aacacttctt ttaaaggaaa tttttctaaa gccttgtctt ttttcatttg ttcaaaaaca
     2101 ggagtttctc ttaaaaattt tctcaaataa gcagaaataa tcccaaaaat tccacctaaa
     2161 aagaatggaa ttctccaagc ccattcatga agttcttctt gggtataaat tttattcata
     2221 attaaaaaaa ctaaactacc taataaaatt ccacctacaa ccgaagcggt taaaattccc
     2281 aaataagttc ttttttgacc ttgtggtgcg tgttcgtata caaaaaccca agctccaggg
     2341 agttccccgc ctatagctat accttgacaa atgcgtataa aaactaaaaa tacaatgcaa
     2401 agaaaaccta tgctttcata atttggaata aaagctagag taaaagttgg aataaccatt
     2461 aacaaaatac taatcataaa cattctttta cgtccaaatt tatctccaaa atgtgccagt
     2521 atcacacccc ctaagggacg cgctaaatat ccagctgcaa atattccata agtattaaac
     2581 atttgccaaa aactacttaa atcttttgga aaaaagtttg ttgaaatata atttgcaaaa
     2641 aatacaaaaa taataaaatc ataaaattct aaagttccac ctaatgatga aagtcctaaa
     2701 acttttatat ctttttggtt aagggttttg ttcattctta atctccatct cataaaaatc
     2761 atcatcattg ttatcatcat cgtattcata atcatcatca tcataattat aatttttatg
     2821 gtgattttgt gtatattctt catcttcatt ttcataatca tcgtaattta aatcttcttc
     2881 atcttcataa gccattgttt tctccttaaa taaaaataca aagcttattt tatcttaaat
     2941 ttgtttggtt ttgctataat ttttataatt ttttaaaagg tgaatttatg aaattaagtc
     3001 atttagatga aaaaaattat cctaaaatgg tagatgtaag cgataaaaat attactttaa
     3061 gaatagccac agccagtggt ataatatata tgagtcaaga agcttttgat gtaattaaaa
     3121 acaataccgc aaaaaaaggt cctgttcttc aaacggctat tattgcggct ataatggggg
     3181 ctaaaaaaac aagtgaaatt attcctatgt gccatccttt gatgctttct aagattgaaa
     3241 cagatattgt ggaatttgtt aaagaatgtg catttaagct tattgtaaca gttaagtgtg
     3301 aaggtaaaac aggagttgaa atggaagctt taagtggagt tagtatagga cttttaacta
     3361 tatatgatat gatcaaggct atagataaat caatgagaat tacggatata gtgcttgaaa
     3421 gcaaagaagg aggtaaaagt ggtaaatttg tgcgatctta aaaaagaacc tcagatcaat
     3481 tatcctactt tttgggatta taaggtgatt tttgaggtgc atattaaggc aagtgaaatt
     3541 tttgaagaaa ttttaggtca aagagaatat aaatttgaac attcgaattc aagtgcgagt
     3601 ggaaaatatc aaagttattt gttaaatgtt tatgttgata gcaaaaaaga tcgtttggat
     3661 atatttgata aattaaaagc taaagcaaaa tttgtacttt aagaaagaag gaaaaatgaa
     3721 aaatacttta attatttttg aaaattcttt atcaaatctc ggtaaagatg aagcaagtga
     3781 tttacttgaa gacttgagtt ttaatcttgc gtataagcaa atttcacata atcctcatga
     3841 aacaaaaaaa gttttaaatt ctcttttggt tgaattttta actattttga aaaaacttga
     3901 tttttttgat gatgaaaatg ttgcaaaggt tatcaaagct ttggttaagg cgagtattgt
     3961 agatgctcaa aattcacttt atgagtatat tagcgaagct gaattattaa acaaacagat
     4021 tgaaaatcaa aagaatttga ttaaaaatca aatcagcgat aatttttttg aattcgagaa
     4081 tattttacaa gaatgttctt tttgtgatga atttagtggc ggtttaaatg atgctatttt
     4141 atttgatata gaaatgcttg gaattttaaa agaaaccgct gaaagtgctt ttttaactac
     4201 attagaaaag gctgaagata tagaacttac aagtagtgaa atagctaaaa atctcgtata
     4261 taatgccatt tgtgaagctc attttgaaaa agaaagaatt ttaaaaattt caagtattat
     4321 tttaaatacc gcttttgaaa tagctaatga atctatggct tatgcaaaag atctttgttt
     4381 aggcgtgatt aaaggcacaa gggatggtat tgttttggca atggaaaaat ttaaagcttc
     4441 attaacttat gcaaattttg aagaagatgt tagtttaaaa agcaaagaac taataggtat
     4501 agaagatgat tttattgctc ttttaaaaaa agagattcaa ttacaaaatg atccttgtaa
     4561 gagtatagtt gagaatttgc tagaacatga acttgataat ctttttgcta aatttagacg
     4621 tcttgcaggt gaaagcagag agcaactaat attagtttta aatgatatta agaaaaatcc
     4681 aaagattaat gattttaaca aacttactca aagaaaatta aatcgtttta aacaagaaat
     4741 ttttgaatta gaaaaaattg ctagtgaaaa atacaaagat ttaaattcca aaaaagctaa
     4801 aaagctcggt gtaagacttt gggaaaaagc aaaaaaattc gttaaaaaat aatatcccat
     4861 ttttgggata ttaaatatct atttctatac ctacaggtgc gtgatcagag ccaaaaatat
     4921 catctcttat gaaagcgttt ttaagtttat cttttaaacc ctttgaaatg aaaaaataat
     4981 caatcctcca gcctacattt ctttctcttg ctttcattct atagctccac cacgagtatt
     5041 tttctttgat ttcaccatta atttctctaa aagtatctat aaaaccaagt tttagcaaat
     5101 catcaatcca agctctttct ataggtaaaa aacctgaagt gttggcattg gcttttggat
     5161 gagtaagatc gatttcttta tgagcggtat tgacatcacc acaaataata atttcaaatc
     5221 catcctttaa aagcttatcc aaatacacta aaaaatctgc ataaaatttc atcttaaaat
     5281 ttaaacgctc ttcatctttt tgaccatttg gaaaatagat attaaaaagt gcaatatttt
     5341 taaagcggtg ttctaaaacc ctaccttctt catcatcaaa aaattcgcat ttttttactt
     5401 cgctattaaa attacaaaga ctcattaccc cagaataccc cgctctttta gcagaattaa
     5461 aatacatgtg tttaaaagga tattcataaa tttttttagg aaatttatct tcatgtgctt
     5521 tgatttcttg aaaacctata aaatcaattt gttcttgtgc tatccaatca agtgcatttt
     5581 tatcacaaat agctcttaag ccattgacat tccatgaaag tagtttcatt attttcctta
     5641 aaattttcat taaaagtgta aatcataaca taaaaagatt tcaaactaca atccatttaa
     5701 aaaaattcaa taaaattaaa agcttaaatt tggaggtggg atttatatgc ttagattaac
     5761 ttggcttcag tttacttttt ttaattcttt gatgattgta ttgttgaatt ttaatttatt
     5821 ttattttgtg tatgaaaaaa atacacaaaa ctggtttata acttttgttt ttattgtggc
     5881 ctattttgcc attgttcacg tgatttgctc tttgcttttt ataaagtttt ttactaaatt
     5941 tttttctata ttatttataa tatcatcttt tttaagtgtt tactttatta gtttttatgg
     6001 ggtgcttata gattctgata tgatacaaaa tgttgttcaa acagatatca aagaagtaaa
     6061 agatttgtta aatttaaaat taatcttatt tgttgttttg gctttattgt tggtttttta
     6121 tgttgttaaa gtaaaaattg attattatgg tagttttaaa tcccatctaa aaattaaaat
     6181 tatcaatata atatcaggtt tgattgttgt ttgtgcggtt ttaatccctt taaataaaac
     6241 tttcttgcct ttttttagaa actataatga aataagaatg tataataccc ctttttatca
     6301 aatttatgcc gtatatcgct attatgttcg ttttgtaaaa gctaagccag aatttaaaac
     6361 tatagctaat gatgcttata gagaaaacaa tcacactaaa aaacttttag ttttggtagt
     6421 gggtgaaacc gctagagcgg caaattactc tttgggtgga tatgctaaaa atgataccaa
     6481 tttttatacc aaaaaagata atgtagtgtt ttttgataat ttttcatcat gtggaacagc
     6541 aacagcggta agtttacctt gtatgttttc tatttctaag cgtgaaaatt attcaagttc
     6601 agaatttcaa gaaaatgcga tggatgtgct ttataaaaca ggtgtagata ctgcatggtt
     6661 tgataataat tctggtggtt gtaaaggggt ttgtgataga ttagcttata agcaaaagct
     6721 ttctagtgat ttggatgaaa atttactcgc tccttttaaa gaaaaattaa atcatttaag
     6781 tgatcaaaat atattagttc ttcatttgca aggttctcat gggccaactt attataaacg
     6841 ctatccaagt gaatttaaaa aattcactcc aacttgtgat actaatgagc tttcaaaatg
     6901 tgataacgag gctttaatca acacttatga caatacttta ctttatacag attatctttt
     6961 aagtgagatt ataaaactat taaaagagca aaaaagctat gaaagttctt tgttttatct
     7021 ttcagatcat ggtgaaagtt tgggtgaaaa tgatatttat cttcatggta tgccttatgc
     7081 tatagcgcca agttatcaaa cccgtattcc tgctattttt tggagcaatg atgaaaaatt
     7141 aatgaattta gctaaagagc ataaaggttt aaaactttct caagataatc tttttagtac
     7201 tcttttagga tattttgatg taaaaacaag tgtttatgag ccagaatatg atttattaaa
     7261 tcctaaactt aaggcaaatc catgaagcct aaatatcatt ttttaaataa tgcaagatat
     7321 gctttagaag ggatttttgc tttatttaaa aatgaaatgg cgtttagaat tgaactttgt
     7381 attattatcc cagcgataat ttgtagtttt ttcttaaaag ttagtttttt ggagcattta
     7441 ttgttggtaa gtgttttaat gcttatttta attatcgagg ctttaaattc ggctattgaa
     7501 gcttgtgttg atttgattac aaatgaatgg catgaaaagg caaaaattgc taaagattgt
     7561 gcgagtgcgg cagtgttttt tagtgtgctt ttagctcttt ttgtttggag ttttatttta
     7621 tatagtattt acttatgaaa tttgaaaatt taatacaaga aattttggga aaaaagcgtt
     7681 ttgaattgtt aaaattttta tgcgaaaatg ccgatgaaaa tggttttatt atgattaaaa
     7741 tcagtgagct tgaagaaaaa ttaaaccaaa gcaagcccac tatcatcgct acttttaaat
     7801 ttttagaaga aaaaaaactt tttaagcgtc ttaaaaatgg attttatcag ctaaaaatat
     7861 aggagataaa atgaaactta aaaacccttt ggatatgcat ttacatttac gcgatgaaag
     7921 tatgcttgcg cttgtagctc cttttagtgc aaaagacttt aaggcagggg ttatcatgcc
     7981 aaatttaatc accccactta ctgaaataga tgtattaaaa gcttataaag aacgcatttt
     8041 aaaagcatgt aaaaatgaag attttacgcc tttgatgact ttatttttca aagactatga
     8101 tgagcaattt ttagaaaaag ctaaagacga gctttttgct atcaagcttt atcctgcagg
     8161 catcactacc aactcagata atggaatttc aagttttgat atagaaaagt taaaacctac
     8221 attaaatact atgagcgaat taaacatacc cttacttgtg catggagaaa ccaatgattt
     8281 tgtcatggat agagaagcaa attttgccaa aatatatgaa aaattagcta aaaactttcc
     8341 aaaattaaaa attgtaatgg agcatattac cactaaggtt ttgtgtgatt tattaaaaga
     8401 ttatgaaaat ttatacgcaa ctatcacttt gcatcattta atgataacgc ttgatgatgt
     8461 agtgggtggt aaaatggatc cacatttatt ttgcaagcct attgcaaaac gctatgaaga
     8521 taaagacgct ttatgtgagc ttgcttttag tggctatgaa aaggctatgt ttggaagcga
     8581 tagcgcgcct catccattgc acactaaaga atgttgtggt tgtgcggctg gagtttttag
     8641 cgcaccggtg attttacctg tattagttga actttttgaa aaacattcaa atgaaacaaa
     8701 tttacaaaaa tttatttcag ataatgcttg caaaatccat aatcttaaat ttgaaaaaga
     8761 taaaatcgtc atcttagaaa aacaagaatg gcaagtagcg caaaaatacg gcgatgtagt
     8821 gccatttatg gcagggaaaa ctttaaattt caaagtcgca aattaaagga aattaatgct
     8881 aaaagcttat ctagaaaaca taaaagatat ttctacaaac gataaagaac atacccatag
     8941 aacagctttg caaaatttat tgcaagctat aaaagataat caagacaagc aaaataaaat
     9001 ctctatcaaa caagaaccaa ataacgacaa agaaggtaga ggtgctccgg attttttgat
     9061 tacaaaagat tttttaacac taggttacat agaaaacaaa agagtaaatg caaatcttga
     9121 taacatcata acaagtgatc aaattttaaa atacacaaaa ttaagcccaa atatcattct
     9181 cacagattat ttaagattta tattattaag tttaaatgat aagaatgaaa ttatcatttg
     9241 taaagaagta aaaatttgct ctcttgatga gataaaaagc gttattaaaa atcaatcttt
     9301 gctagatact aaaacacaag agttaaacga actttttagc atattttttt ctaaaatccc
     9361 aaatcccata aattcagctt tagattttgc aaaccatcta agcctaagaa caagaatttt
     9421 aaaagatgag cttttattat caagcaaaaa tgaaacttta ttaagtttat ttaacacctt
     9481 caaagaaaca ctttataaag aattatccta tgaagaattt tgcgattctt ttgcacaaac
     9541 tttaacttat agcttattct tagcaaaatt aaataacgat accgcaaaag aaatagatct
     9601 aaacaatgct aaaaaattca taccaaaatc atttccattg atccgttcta tgagtggatt
     9661 tttagatgat agttttgaaa atttagaaaa tataaaatgg cttttagaag aaatcataaa
     9721 cattataaat cacatagaca ttacaagcat tattaaagaa ttaaacaaaa caggcgagaa
     9781 agacttattt aatcgtccta ctattttatc tactcacaaa gatccttatt tgcactttta
     9841 tgaaacattt ttagcaagtt atgatccaaa gcttagagaa gtaaggggag tatattatac
     9901 tcctgcgcct gtagtaattt tcatcataaa tgccatagat gaaattttaa aacaagattt
     9961 caatcacaaa aaaggattaa gtgaagcttt agataaaaat ataaccttac ttgattttgc
    10021 cacaggcact ggcacctttt tacttgaagc ttttagaaaa gctttagaac ctataagcaa
    10081 aaatagcgtt aattacaatc caaaagtttt gatagacaaa ttttgtggtt ttgaattttt
    10141 aatagcccct tacaccatag cacatttaaa aatttctcaa agttttaaag aagaatttaa
    10201 ctctccatta aacgatgatg aaagtcttaa aatagcacta acaaatactt tatattctaa
    10261 aagcatatcc aaagaacaaa atgatcaaaa cacgcttttt actctcattg atctaacaaa
    10321 agaattcaaa aaagcacaaa aaataaaaga agaacaaatt ctaatcatca caggcaatcc
    10381 gccttatagt ggagcaagta gcaacaaagg cttatacgaa gatgagatca aaataagcta
    10441 tggtttagaa ccaagcaaag caaatcttaa taatgaacaa aaaaagtgga taagctcgta
    10501 ttttaaagaa aaatccaaac aaaacacaag tacttttaaa gccatatatg aaaaacacaa
    10561 actagaaaat gaaaaaaatt caaaagtaat gcttgatgac tatgtaaaat tcatacgctt
    10621 tgcccaaagt aaaatcgact ctcaagaaag cggaattttt gcttttattt caaataatag
    10681 ctttttagat aatcctacct ttagaggtat gagatattct ttaatgcaaa gctttgataa
    10741 aatttatata cttaatttac acggcgatac tagaaaaaaa gaaaaagctc ctgatggaag
    10801 caaagatgat aatgtctttg atatcatgca aggtgtgagc ataaatatct ttataaaaca
    10861 aaattcaaaa gctaaaaata caaacattta ttatcatgat ttatacggca aaagaaagga
    10921 taaatacgaa tttttatatg aaaatgactt aaattctata aaatggactt tggtaaaaaa
    10981 caacgagcct ttttatcttt tcttaccaca aaataatgat ttattagaag aatacaacaa
    11041 gggcataagc gtaaaagata tttttatgct ttcaagcgta ggaattgcaa gctctaagga
    11101 tgctatatta atctcaacga ataataaaaa attagaacaa caagtttata atttttataa
    11161 tgaatttgat aaaaaataca tcaaagaaat agcatataaa ccttttgata cgcaaaaaat
    11221 ttattatgat ataaaaaaag tggaaagacc aagaattgac ataatggaac attttttggg
    11281 gtatgaaaac ataggtttga tttatgatag aggcactaat ctaaaagaaa tttcaaattt
    11341 atttataagc tcaaaagtta tagataaaca tttagtcgga gcaaatagct atgtttctcc
    11401 actttatctt tatcctacaa ctagaagtaa aaaattccta aaaaaagaaa atccaaattt
    11461 taacgaagaa aatttcacct caaaaataga aaatttcaaa gaaagcttta gaactttcat
    11521 agatgagctt tataaagaaa aattctcacc agaagacata ctaggctata tttatgcggt
    11581 gctttttcat aaaatttata gagaaaaata tcttgatttt ttaaaaattg attttccaaa
    11641 aattcctttt acaaaagata aaaatacttt taaaaattta agcaaactag gcttaaaact
    11701 tgtaaattta catttattaa aaaatgatga gttagatttt aatgtaggtg aagccttgtt
    11761 taaagacatt aaaaataaaa atttcaaaat acaaaaaatc aaatacaaca aagacgtaaa
    11821 agaacttttc ataaacgaaa gtttgtattt taataaagta agtcctgaaa tttatgagtt
    11881 taaaataggc ggctatgctg tgctagataa atacctaaaa agccacaaag aagaagacat
    11941 agatcataag cattttacct tgatcataca aactttagat gaaactttaa aaattcaaga
    12001 tgaaatttca aaaatcaatc ttagctagta taactagcta atgattaaaa gttttatctt
    12061 agcttctata atctcttcta cttcatcttt tacaaagctt tctaactctt gtttgtttgt
    12121 attaatacca ttcatactta aatgccacaa agcattttct atcgcacttt gtttgtctct
    12181 ttttaccact ctagtttcgt taaaaatttc atactcataa gggatatttt gtgtatttaa
    12241 aaaaccttgc aaatcacttt cataaaaacc tttaaaatga gtgttaaaat gctcaaatat
    12301 aggatctaaa aagctacttt tacgcctact tgcccagcct aaatacactt ttttagaagc
    12361 taagtttaaa aaagctttat agtctttttc attttgtaaa gcaggagaca tacttaaaaa
    12421 tgcaagatca aatttaacat taggattgtt ttgcatccaa gtttcaaagc tcaaattttc
    12481 gcattttata ttgttaagat ttagtttttt agcatcttct tgtaaaattt caagcatagt
    12541 atttgcacta tctagggcta aaatttcttt agcttcttta gctaagtgta aagtccaaac
    12601 cccagttcca catcctatat ctataatgct tttattttga aaagaaatat ttaaattttg
    12661 taaatattca aaagtttgct tttgtatggt gtttaaagtg ttttgatatc ttgcgtaagt
    12721 tttggccttt ttatcccata aattcatata ttttccttga taaaatatac aaaatcatag
    12781 cataaatttt taaaattcaa gcccaaagaa agggcttgaa tgatta
//
LOCUS       DARGEM010000042        12645 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.042, whole genome shotgun sequence.
ACCESSION   DARGEM010000042 DARGEM010000000
VERSION     DARGEM010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.042"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            44..829
                     /locus_tag="SFZ78_000891"
     CDS             44..829
                     /locus_tag="SFZ78_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8211774.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGLLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            902..3727
                     /gene="uvrA"
                     /locus_tag="SFZ78_000892"
     CDS             902..3727
                     /gene="uvrA"
                     /locus_tag="SFZ78_000892"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG8211775.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYTEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLNQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3732..4175
                     /locus_tag="SFZ78_000893"
     CDS             3732..4175
                     /locus_tag="SFZ78_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8211776.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFTPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4131..5138)
                     /locus_tag="SFZ78_000894"
     CDS             complement(4131..5138)
                     /locus_tag="SFZ78_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG8211777.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGIKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(5135..6482)
                     /locus_tag="SFZ78_000895"
                     /pseudo
     CDS             complement(5135..6482)
                     /locus_tag="SFZ78_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
     gene            6646..9285
                     /gene="polA"
                     /locus_tag="SFZ78_000896"
     CDS             6646..9285
                     /gene="polA"
                     /locus_tag="SFZ78_000896"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8211778.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYNL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDCDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSSLQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9302..10078
                     /gene="motA"
                     /locus_tag="SFZ78_000897"
     CDS             9302..10078
                     /gene="motA"
                     /locus_tag="SFZ78_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG8211779.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10081..10824
                     /gene="motB"
                     /locus_tag="SFZ78_000898"
     CDS             10081..10824
                     /gene="motB"
                     /locus_tag="SFZ78_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG8211780.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10830..11918)
                     /gene="flhB"
                     /locus_tag="SFZ78_000899"
     CDS             complement(10830..11918)
                     /gene="flhB"
                     /locus_tag="SFZ78_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG8211781.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12037..12633)
                     /locus_tag="SFZ78_000900"
     CDS             complement(12037..12633)
                     /locus_tag="SFZ78_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG8211782.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4559 a         2100 c         2000 g         3986 t
ORIGIN      
        1 attattccgt atttgaaata tttaatattt tttaggaaaa gctatggaaa tcacagattt
       61 accttatcta atcataggaa tcatttcagg tattgcttct ggactttttg gcattggtgg
      121 aggtatgatt atcgttcctt ctatgttcgc acttggagca agtgctcacc atgctatcgg
      181 aatttcagta ttgcaaatga tttttgcagc agtttttggc tcttatatta attataagaa
      241 aaaaaatcta aatcttaaag atggtattat gataggtttt ggagggctca taggggcaag
      301 ctttagcgga ttgcttttaa aagctttaag tgatgtagct cttactagcg tatttttggc
      361 ggtaagttgt atatttttta tcaaatatgc ttttggaatt aaagaaaaca ttgtgcaaaa
      421 tcaaagaagc gtttgggtaa agaatgtcat tttatttatt gctggagctt ttactggtat
      481 ttttgctatt tctttgggaa ttggtggcgg acttttaatt gctccgattt tagcttattt
      541 tttaggctat gatagtaaaa aagttgtttc cttatccttg ttttttgtta tttttgcttc
      601 agtctctggt attatatctt tttcaaattc tggagttata gactctgaag ttattcataa
      661 aggaatacta gtaggtatag cttctatggt tggagttttt ataggaatta aaatcataga
      721 aaaaatgcat atttcagctc atagaaaaat tttactttgc gtatatgcct tatcaatact
      781 tggaaccacc cactctttgc ttaataagct aaattttata aatttttaac ttggatttat
      841 ccaagttctt ttaatattat tatgctaaaa tcttaaattt atttaatgtt taggaaagac
      901 tatgaacgat accataaaaa tcattggcgc aagagaaaat aacctaaaaa atatccacct
      961 tgaaattccc aaaaacaaac tcattgtttt tacaggactg agcggaagtg gaaaatcaac
     1021 ccttgctttt ggaactcttt atactgaagg acaacgccgt tatatagaaa gtttaagtgc
     1081 ttacgccaga caatttttag ataaggtagg caaacctgat gtcgataaaa tcgaaggttt
     1141 aactccagcc attgccatag atcaaaaaac tacttctaaa aatccacgct ctactgtagg
     1201 aaccatcact gaaatttatg attatctaag acttttatac gcaagagttg gcattcaaca
     1261 ttgtcatcaa tgcggacaaa aaatttcatc tatgagtgta agtgatatag tcagtgaaat
     1321 tttaaaattt ccaaaaggtg caaaaatcat catctacgcc ccactcatac gagaaaaaaa
     1381 aggaacttat gcagatttgc ttgaaaattt acgcaacaaa ggctatgtaa gagctcaaat
     1441 tgatggagtt ttggtaagac ttgatgaaga aattgaacta gccaaaacca aaaaacacac
     1501 cattaaactt gtcatagata ggcttgaaat tcaagaagat ttactttctc gtcttgcaag
     1561 cgatatagaa aaaggcttac aagaaagctt tggagaaata gaaatagaag ttttaaatca
     1621 tgaggaaata aaccttaata aacactatca ttttagcgag cattcagctt gttttgattg
     1681 taaaatttcc tttgttccac tcgagccttt aagcttttct tttaattctc caaaaggagc
     1741 atgtgaagct tgcgatggac ttggaattcg ttatacttta gatatgaaaa aaatcatcga
     1801 tgaaaattta agtctcgaaa acggtgctgt taaaatcatg tatggtttta ataaaagtta
     1861 ttattataaa ttcctaatcg ccttttgcga gcaaaatgaa attcctatca aaataccttt
     1921 tatgcaatta aacgaagaac aaaaacgtct tgtattgtat ggtaatgcca aaactataga
     1981 atttctttgg aaaagaaatc gcctaaaacg cacttttgaa ggcgtggtta aaatggctta
     2041 tgaaatgcta aaagatgaaa aagatttagc tgaatatatg agtgaaaaaa tttgtaaaga
     2101 ctgcggtggg catcgtttaa aacccgaaag tttagccgtg aaagtagcca aaaaaagctt
     2161 gggtgaaatt ttagatatga gcatagaaga tagtacggct ttttttgcag atgagaaaaa
     2221 tttttcttat ttaagcgagc aacaaaaact tatttctaaa cctatcctaa aagaaatcaa
     2281 cgaaagattg tttttcttgt atgatgtggg gctaggttat ctttctttag ggcgcgatgc
     2341 aagaacgatt agtgggggtg aagcacaaag aatccgcata gcttcacaaa ttggcagtgg
     2401 tttaagcgga gtgatgtatg ttttagatga gcctagcata ggacttcatg aaagagatac
     2461 tgcaaaactg attaaaactt taagaaattt acaacaaaag ggcaataccc taattgtcgt
     2521 agagcatgat aaaatgacca tagaagaagc agattttatt gtagatattg gtccaaaagc
     2581 aggaaaattt gggggtgagg ttgtatttag tggaacttat aaagaacttt taaaaagcaa
     2641 aagcgaaact gcactttata tgaatggtaa aaaacaaatt tcacaacttc aaaacagaac
     2701 acagaaagaa tggcttgagc ttaaaaatgt aaatattaac aatatccaag atttaagcgt
     2761 aaaatttcct ttgcaaaatt tagtcgctat aacaggagtt tcaggttctg gaaaaagctc
     2821 tttgatactt caaaccctac ttccttttgc acaagaggaa ttaaaccgtg cgaaaaaagt
     2881 taaaaaactt ggcggagtac aaatagaagg acttgaaaaa cttgataaag tcatttatct
     2941 taatcaaagc ccaattgggc gcacaccacg ttcaaatcct gccacctata caggtgctat
     3001 ggatgaaatc agaaatcttt ttgccgccac taaagaagcc aaaatgcgtg gttataaagc
     3061 tggacgcttt tcttttaatg tcaagggtgg aagatgtgag aaatgtagcg gagatggaga
     3121 aatcaaaata gaaatgcatt ttttacctga tgttatggta gtttgtgata cttgcgaggg
     3181 caaacgctac aatgatgcca cgctagaaat caaatataaa ggcaaaaata tcagtgaaat
     3241 tttaaatatg agtgttttag aagcgagtga attttttaca gccgttccta aaatcaaaca
     3301 aaaattagat actctagtaa aagtgggttt agattatcta actctaggac aaaatgccac
     3361 caccttaagt ggaggtgaag cacaaagaat caaacttgct aaagaactaa gccgtagcga
     3421 tacaggaaaa acgctttata tacttgatga acctacaaca ggactgcatt ttgaagatgt
     3481 caataaactc atcttagttt tacaacattt agttgatctt aaaaattctg tttttgtgat
     3541 agaacataat ttagatgtga ttaaaaatgc tgattatatc atcgatatgg ggcctgaagg
     3601 cggagttaaa ggtggaaaag ttataagcac aggaagcgtg gaaaaagtcg ctaaagaaca
     3661 caaaaaaacc cgttcttaca caggatatta tctagactta gagcttaaaa atacacaaaa
     3721 atcataattt tatgtttgat tttttatata atgatattag ctatttgggg cttttcatgg
     3781 tgtgttttct ttcaagcaca ctattaccct tagcaagtga agcctttgtt ttaggcttta
     3841 taaaacttga ttttactccg aatttggtac ttatcgtagc cactttgggt aataccttag
     3901 gaagtttaag tacttatgct ttagcgtatt ttggaaaaga aaaaatttta gaaaaatact
     3961 ttagcaaatc cttaaaaaaa ttagaaaatt tcaatgctaa ttttgctaaa tttggaagta
     4021 tatttgcttt ttttactttt ttacctttag taggagatct ttttgccttg ggacttggtt
     4081 ttgcgaaata ttctttttta aaaactatat tttttatctt acttggaaaa ttaagtcgtt
     4141 atgctttcat aattttcata gcaaactcct tttaaaaacc tctcttttat aagttttaaa
     4201 agctttgcat tgtctacatt ttttagaatt ttaacacaat ttttagtgct taaatccacc
     4261 cccatactca tttttggttc tttaaaacaa cgccaactca tacctcttgc caaagaacta
     4321 tcgcaaataa catcagcata acactcatca aaatctgcaa tactagaatc taatgcgtaa
     4381 gctatcgtta aagcatcatg tatccaagtt ccctttatac cacgtgtttt agaggcataa
     4441 tcaatccaaa cacctaaagt ttcaacgata aaatcacata aaatattctt accttgcaac
     4501 tcttttaaat cctcgtgtgt taataaagtc tgcatggttg cattataagg tatgagtgta
     4561 attttagctc ttgaatttag cactatacta gccgcctcag gatcaaaacc aaaatttgta
     4621 tctttagtgt aataaggcat atcaaaactg ccgcccataa taaaaagctc tttaagattt
     4681 atatcaaaat ctttaaaaat tttcatagtc atagcgatat ttgtcaaagg tcctatcgca
     4741 caaatagaaa tttctttagg atttttactc accaactcac ccattttaaa aatcgcatca
     4801 ggatttatat tttctaaaat ttcaggactt tttatatttt cccaaagata ttcaagttta
     4861 aaatttttaa cactttcatc aagtctttga cgccaagctt tacttggttc ttttagggct
     4921 tcattcgctc ccaaataaac ggggatattt aaatttaaac gtttaaataa atccttagcc
     4981 acactatagg caacaaggct tggaacatta ccgcaaactg tgcttagcat ttcaagtttg
     5041 atttctttag atgacaaaat caaagcaagt gctaaaccat catcagtatt tgctcctgca
     5101 atagcattgc ctatgtccgt gtctaagata agtctcatat cgcatcttct attttattta
     5161 aatctctacc tctagtttct ggcgcaaaaa atgtagtcgc aaaacctata cctgcagtta
     5221 atacaaaata tgtcgcgata ggccaccaag cgccataata tgcaagcaaa gcagaagcca
     5281 ccataggcgc tgttcctcct gaaagaatag aacctagctc cttagcaaaa gccatttttg
     5341 tataacggtt ttttacccca aaaagctcca caccccaagc cgcttgcaca ccaaaaatcc
     5401 ctaaagatgc taaagacata cctacaataa tagttaaaat cacaataatt tcatttttac
     5461 tatctaaaag cataaaagca ggaaaagcat aaatcattaa aagcaaacaa aacattctat
     5521 aagtaataca tcttccaaat ttatcactta aataacccgc caaaggaata actaaaaacc
     5581 ctaccaatga agctatcatt accgctgtag tagctactga tttgtctaaa agtaaaattt
     5641 tagtcacata acctacaata aaaccttgcg caagataaga aggtccattt tcgcctattc
     5701 ttaagcccac catagtccaa aaagcacgac ttctttgcca aaaacttctt tcatcttttt
     5761 tcatatgctt ttcgttatta agacgcaatt tcatcatttc atttttttgc ttttcaaaaa
     5821 caggggtttc tttgacatga aaacgaatat atacagcaaa aagagcgatt aaaatacttc
     5881 ccataaaagg aactctccag ccccattctt taaaacttgc ttcatccatt tgtaccatca
     5941 aaagccatac aaaagacgca agcaaagttc cactatttga tcctaaagca atcacagaag
     6001 aaacaagccc tcttctcttg ctaggagcat attctcctag cataactgtt ccacctgaaa
     6061 gttcagctcc tgcgccaaaa ccctgcataa aacgcaatgc aaccaaacaa ataggcgccc
     6121 aaacaccaat cactgcataa cttgggataa aacctatcag agtagttgaa attcccatta
     6181 aagctattgt agccatcata acattttttc ttccgtgttt atcacctaaa tgaccaaaaa
     6241 acaaagcccc aataggtctt gcaataaaac ctatgccata agttacaaaa ctaagcaaaa
     6301 gtgcaattac tggagtttgc tcaggaaaaa attgttgcag ctgctaaacc ataaagtgca
     6361 aaatctgcat attccatagc agttcccaac cagcaagaaa aaactgcctt tttaaaaact
     6421 tttctacctt caggtgtgtt aaaattctta tctgcaattc catcaatttg ctgatttgtc
     6481 attacatttt ccttacatta ttcatataaa atttttactc tactcgatat tatgactaaa
     6541 aattgaagta ttttcgctta aatatcttta aatttcgaga cattttaagc aaaattttga
     6601 aataatataa ccaaaaaata tattttatca aaagaagaaa ttattatgaa aactttaact
     6661 attattgata cttttggatt ttttttcaga ctttactacg cattaaaagg ttttaaaaat
     6721 tcacaaggac aagctagtgg aatgattagc ggttttgcaa attttattta taacttaaaa
     6781 aatgaatata aaagtgatta tattgttttt gcattagatt ccaaaggaaa aacttttcgt
     6841 agtgaaattg atccaaacta taaacaaaat cgcactccac caccgcctga acttctagaa
     6901 caaattccaa tttgcataaa gatgatagaa aaaatgggtt ttataagcgt ttctcaagaa
     6961 ggttatgaag ccgatgatat catcgcttct tttgtaaaaa cttgtgaaga tagggatatt
     7021 tttgtacgca ttatcactca agataaagat ctttatcaac tcataaaaga tggcaaaaca
     7081 agcatttaca gtcctatttc taaaaacgac tgtgatgaag cagcgtgttt agaaaaatac
     7141 ggagtaaaac ctaatcaaat cagagatttt ttagctcttt gtggggatag ttctgataat
     7201 attccaggcg ttaaaggtat aggtgcaaaa ggagctaaaa ccttgcttga tgagtttggt
     7261 agcatagagg gaatttatga aaatttaacc ctagtacgta acgaaagaag tcgtaacttg
     7321 cttttagagg gtaaggaaaa tgcattttta agcaaaaaat tagcttcttt gtatgacaat
     7381 ttagaagtac aaaatctcat agaaaaagcc acttatcctg atgaagaacc tcttttaaaa
     7441 atacttgaaa ttttagaaca ttacgaactt aatactttgc ttaaaaaact gcgtcaaaat
     7501 cctgataata aagataaaaa tttaggtttt aaagccactt tagtacaaga tgaaaacaaa
     7561 ctttttgaaa ttttaaatac ccttgataaa gaaagtatta ttgcttttga taccgaaacc
     7621 acaggacttg atactaaaga agcaaaaatt gttggtttta gtttttgcat gaatgaaaat
     7681 gaagcctttt acgtgccttt aactcataat tatcttggag taggtgagca aatctcattg
     7741 caaagtgcca aaaaagctat agaagtaatc tttaatcatt ttgttatagg gcacaatctc
     7801 aaatatgatt ttaaaatcat tcaaaacaat tttgacttaa atttacctca aaaatacgca
     7861 gatacaatga ttttggcatg gcttaaaaat ccttctttaa gagtaaatat ggatgattta
     7921 gccttaagac tttttaatta cgaaaccttg cattttgaaa gccttgttaa aaaaggagaa
     7981 aattttgcaa gtgtagaact tgaaaaagct tgtaaatacg ctgcagaaga tgcttatatc
     8041 actttaagat tttatcttta ttttttaaaa aatcttgaaa ctcctttatt agaacttgct
     8101 aaaaactgcg aatttgattt cattaaaatc attatgatga tggaagaaaa tggcataaag
     8161 cttgatacaa atgcacttga aatccttatg aaaaaatttg aaaatgaaat caaaaattta
     8221 agtgaagaaa tttatactct ttgcgaggat agatttaatc taaattcacc taaacaaatg
     8281 ggtgatatac tttttgaaaa actcaaactc ccaagcggaa aaaaaggaaa aacaggatat
     8341 tctaccgatg aaaaagtttt aaatatactt ttagataaac atcctgtaat tgctaaaatt
     8401 ttagattata gagaacttgc caaactttat tccacttatt gcgaaccttt gttaaaacta
     8461 gcgttaaaag ataaaaattc acgcatttat tcaagttttt tacaaactgg aaccgctaca
     8521 ggacgtcttt catctaagga tccaaatttg caaaacatcc ctgcacacgg acaatatgca
     8581 aaagattata aatcttgctt tgtagctaaa gatggattta gttttatctc tcttgattat
     8641 tctcaaatcg aacttagaat acttgcacat tttagcgaag atgaaaaact tttaaatgct
     8701 tttgccaatg atgaagatat acacgcaaga acagcaataa tgatttttgg tgaaagcaat
     8761 tatgaaacca gaagtgttgc aaaaagtata aattttggac ttatttatgg tatgggttat
     8821 aaaaccttaa gtcaaaattt aaaaatagaa gctaatttag ccaaatctta catagaaaaa
     8881 tattttgaaa attttactag tattaaaaaa tattttgaaa cagttaaaaa tgaagctaaa
     8941 caaaatggct ttatcactac tttaagcggt cgcaagcgtt attttgattt tgaaaacgca
     9001 aaacctatgc aaattgccat gtatgaaaga gaaagcatta attcaagctt gcaaggctca
     9061 gcagcagatg taatcaagct tgcaatgcta gaaatcaata aggaattaaa tgaagataaa
     9121 aagcttattt tacaaattca tgatgaatta atttttgaag taaaagacga tttgtgtgaa
     9181 aattttgtaa aaaaaactag agatattatg gaaaatatag taaaattaaa agtaaaatta
     9241 aaaacaagtt caagtatcgc caaaaattgg ggcgatttaa aataatcaag gagataaatt
     9301 aatggatctt tcaaccatat taggaatggt gcttgcagtt actagtattt cggtaggaga
     9361 tatactagag ggaggcaatc ctttgcatgt tgtgcatctt tcttcctttc tcatagttat
     9421 gccaacagct gcattttgcg caatgacttc tacgcataaa aaaattgtaa aagcagccta
     9481 caaagaactc aaagttgttt ttaaaggttc tggagtaaat ttacccgaaa ggatagccca
     9541 gctagtcgaa tttgctatta ttgcaagacg agatggtctt ttagcgttag aatcaagaac
     9601 cagtgagatt gaaaatgaat ttttaaaaaa tgctatgatg atgcttgtag atggtaaaag
     9661 ctttgaagaa attcatgaaa gcatggaaat acaaactgaa caacttgaag agcattataa
     9721 agaatgtgca gaatattgga tagtatttgg agagacttgt cctaccatgg ggcttgttgg
     9781 agcggttttt ggacttattt tagctcttaa attactagac aatcctcaag caatggcagc
     9841 aggtatttca ggtgctttca cggctacagt tacgggaatt tttggcgctt atgcactttt
     9901 tgctccttgg gggaaaaaat taaaagctaa tggaatggat cttgtaaaag agcaaattgt
     9961 cattactgaa gctataaaag gaattgcaga aggtgctaat cctagagatt tagaagctaa
    10021 actttttaac ttcttaagtc acgatgatcc aagaatttca caatttgaca aaggttaaaa
    10081 atggctaaaa aacataaatg cccagaatgt ccagcaggcg aaaaatgggc tgtaccttat
    10141 gcggactttc taagtttgct tttggcactt tttattgctc tttgggcaat ttctaaaaca
    10201 aatcctgcta aagtagaggc tttaaaaact gaatttgtta aaatctttga ttacacctct
    10261 actcaaacag tcaaagaaga gagtaaaacc caagaaaaat ataaaggcgc agcaaaagaa
    10321 gaaagcgatg aactcaaatc gttaaaacaa atgactatga cacagcaaga aactatcaaa
    10381 cgtcttcaag cagctctaga tcaaagcgat aatcaggttg ctcttaacct tccatctaaa
    10441 gttgaatttg aaagaggtag tgctcaaatc gtttcagctg atatacaaga ttatttaaaa
    10501 cgtatggctg agctaacaac atatttgcca cctcaagcaa aaatagaaat tagaggctat
    10561 acagacaata gcgactctat tataagaagt tatgaactcg cctaccaaag agcggaaaat
    10621 gtattaaaat attttataga aggtggagca aatttgaaaa atattagcat taaaagctac
    10681 gggcttaata atcccatcaa tggaaatccg caagccctag aaaataatag agtagaaata
    10741 tattttaaag tcgatacggc agatacaagc actcaaaaat cagttcttga acttatcaat
    10801 aaaataggaa ctaaagcacc ttaaaagttt tagtttcctt tttttacttg accagctaaa
    10861 cgactcttat tatttgtatt ataaacaaat cctagcacct cagctacagc tttaaacatt
    10921 tccctaggaa tgagatcatt aacatcacaa gctttataaa gctcccttgc taaaggagga
    10981 ttttcataaa ctacaacatt attttcatag gctacttgtt ttatacgaag tgcgagaaaa
    11041 tccactcctt tggcaacaac tctaggagct tgttctttac ttgtatcata acgaatagct
    11101 acggcataat gagttggatt tgtaatcact acatccgcac ctgcaacatc ttgaaccatg
    11161 cggcgacggg cagcttccat ttgaagtcta cgaattctac ctttaacctg aggatctcct
    11221 tccatttgtt tatattcatc ttttatttct tgtttgctca tacgcaaacc tttaaaatac
    11281 tgaaaacgca ccaaaaaaac atctaaaaca gcaataatta aaaaagcaac tataacaata
    11341 gctgctaaaa caatagccct atctcttagc caagtaagct gtgcaaccat agtataaagc
    11401 tcaactcttg gaagctcttg cataaattta agcaaaacta taaaagctat agtaaaaaca
    11461 atacccactt ttaaaataat ttttatactt tcaacaattt ttttcaatga aaaaaggttt
    11521 tttaaacctt tcaaaggatt gatttttcct aaatttggca taataggttt ggttgtaaaa
    11581 ataaaaccaa attgcataat atttcccaaa accccagcaa tcataatact taaaacaata
    11641 ggtgcaagaa taattaaaac ctcaaaaatg cttttaatca taatggcttg aataatacgc
    11701 aaatcaaatt caacaccaat aaaactttga tagtatctat ataaatttac aattctctcg
    11761 cccataaaac tcatcataaa taaagttata gttactccaa ttatcaaagt tacaatagct
    11821 gccgcatctt gagactttgg aacattacct tctttacgcg catcttctat ctttttggac
    11881 gtgggttctt ctgttttttc ttgatcttcg cctgccatat tttagcctaa ataaaaattt
    11941 taatatgtgt gtaaaattat agtagaaaat ttatgaattt caattaaaga ataaaaatga
    12001 agaaaaagcc tcgtaaagag gctttatact aagaaattaa agtttagctt cgtttttgcc
    12061 aagatattca gccacgcctt tagggttagc tttcatacct tcatcgccct tattccatcc
    12121 tgcaggacaa acttcaccat gctcatttgt aaaaagcata gtatcaacca ttcttaacat
    12181 ttcatctata tttctaccta gtggtaaatc attaaccaca gcatggcgaa ctgttccatc
    12241 agcatcaagc aagaacgaac cacgaagggc aactgcttct gcataaagta catcaaaatt
    12301 tctagcaatc tgcttagtta agtcagcaac aagcggaaat ttaacctgac caataccacc
    12361 ttgatttact ggagtatttt tccaagcaaa atgtgaaaat tcattatctc ctgaaattcc
    12421 aattacttca atgccacgat ttttaaattc ttgatatctt ttgtcaaaag ctataatttc
    12481 tgaaggacaa acaaaagtaa aatcttttgg ataaaagaat actaccgctc cttttggacc
    12541 tatgttttta taaagattaa aatcttgaac aatttcattg tttcccaata ctgctggagc
    12601 agtaaaatct aaagcttttt tagtaactat catattttct cctaa
//
LOCUS       DARGEM010000043        12347 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.043, whole genome shotgun sequence.
ACCESSION   DARGEM010000043 DARGEM010000000
VERSION     DARGEM010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12347
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.043"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(142..1161)
                     /gene="flgS"
                     /locus_tag="SFZ78_000901"
     CDS             complement(142..1161)
                     /gene="flgS"
                     /locus_tag="SFZ78_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG8211783.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(1165..2043)
                     /locus_tag="SFZ78_000902"
     CDS             complement(1165..2043)
                     /locus_tag="SFZ78_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211784.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKVKSLNLTPNYYIIISKNGFSKEFDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            2079..3353
                     /locus_tag="SFZ78_000903"
     CDS             2079..3353
                     /locus_tag="SFZ78_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG8211785.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(3350..4174)
                     /gene="purU"
                     /locus_tag="SFZ78_000904"
     CDS             complement(3350..4174)
                     /gene="purU"
                     /locus_tag="SFZ78_000904"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG8211786.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(4171..5289)
                     /locus_tag="SFZ78_000905"
     CDS             complement(4171..5289)
                     /locus_tag="SFZ78_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG8211787.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESTFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(5258..5749)
                     /locus_tag="SFZ78_000906"
     CDS             complement(5258..5749)
                     /locus_tag="SFZ78_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8211788.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(5746..5994)
                     /locus_tag="SFZ78_000907"
     CDS             complement(5746..5994)
                     /locus_tag="SFZ78_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8211789.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(6073..6246)
                     /gene="tatA2"
                     /locus_tag="SFZ78_000908"
     CDS             complement(6073..6246)
                     /gene="tatA2"
                     /locus_tag="SFZ78_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG8211790.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(6256..6594)
                     /locus_tag="SFZ78_000909"
     CDS             complement(6256..6594)
                     /locus_tag="SFZ78_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG8211791.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(6587..7501)
                     /locus_tag="SFZ78_000910"
     CDS             complement(6587..7501)
                     /locus_tag="SFZ78_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG8211792.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(7506..8030)
                     /locus_tag="SFZ78_000911"
     CDS             complement(7506..8030)
                     /locus_tag="SFZ78_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG8211793.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(8027..8809)
                     /gene="napH"
                     /locus_tag="SFZ78_000912"
     CDS             complement(8027..8809)
                     /gene="napH"
                     /locus_tag="SFZ78_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG8211794.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(8806..9546)
                     /gene="napG"
                     /locus_tag="SFZ78_000913"
     CDS             complement(8806..9546)
                     /gene="napG"
                     /locus_tag="SFZ78_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG8211795.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(9564..12338)
                     /gene="napA"
                     /locus_tag="SFZ78_000914"
     CDS             complement(9564..12338)
                     /gene="napA"
                     /locus_tag="SFZ78_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG8211796.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEALDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         4155 a         2302 c         1512 g         4378 t
ORIGIN      
        1 atagaattat aatttgagtt atcattgata ctaaagatac tcatattaat tccttgattt
       61 agattttttg ccttcaacct aaatatatta aaataatata agcaagatct gttccacttt
      121 ggggtgaaaa gaaaatattt atcacaccaa aggtaaggta aaataaaaat tcttaggatc
      181 actttgaaaa cttaactctc ccttatgagc gtttatgatt tctttagaaa gagacaagcc
      241 aagtccattg cctttaagtt ttgttgtttt aaaagcttca aaaaccaatt tctcatcttt
      301 tatttcacaa ccattatcat acactctgat gcatattttt tcattatcat aacttgctaa
      361 aattttaatc ataggctttt cacattcgct ttcttctatc gcatcaatag cattataaat
      421 caaattttgc aaaaccaaac caagaagagc tttatcagca caaatctgct tatccaaaaa
      481 agatatttca aagtctattt gagaagtgaa attataagag ttaatggcac tttcacactc
      541 ttcttttaac tctaaaagat taaaatttaa agcattgatg tgtacaccct tagtaaaaag
      601 tagagttgaa tttacgatac gctccactct agcaatagcc ttttggattt caagaactat
      661 atgcttattt ttaagctcac tacgagcaaa aagggttgaa gcaagtaaag atatagatcc
      721 aataggattt cttatctcat gtgccaaatg agccgctaca ctacccatgc ttgcaagcct
      781 ttcattgcgt ttttcatcgc taatatctgt agctgaaact atagtttttt cattatgcgc
      841 tatgattttt accgcataaa acctaccttc aaattcaagc tcatcacgaa ttttatcaag
      901 actaatgata ctaagtaatt ttggattttt caaggcttct tgattttgta aaataatatt
      961 tttttcttta tctaaaatcc aaagcgcact aggcaacacc tctataatct catcaaccat
     1021 tgcgcgtaag gagttatagt tttcatttaa agttttgtat tcattttcta ttacataagt
     1081 ttgttctata agactttcta agcctttttg tagggtttct ttttcatttg agtctaaact
     1141 ttttaaaata ctttcattca tttatcattc ctctaataaa atcttaaaat cattcaaatc
     1201 aagtaaaagc aaattctgtt cgcatatttt atcaaattcc ttgctaaaac cattttttga
     1261 gattataatg taataatttg gagtcaaatt taaagacttt acttttgatt ttaaaagatt
     1321 taaaatattt ttacaaattt ttttattttt aaatttaact tctccgacaa aacacaaatt
     1381 ttcatcttga taataaagat caagttctaa attcttatcc cagtagcttt gcactccatt
     1441 gatattgaat tttttctcaa gcaattctct agaaagttgt tcaaaacaaa aactttgata
     1501 aagctcaaat ttttccttaa tgcattctaa aacttcttta taacgatttt gcaaaataag
     1561 cttttcattg ggctttaaaa aataaaaaaa gaaacgagta aaatggttgc taaatataat
     1621 cttatcttgg acaacataag atcttagttc ttttttgatt ttttgtcttt tatcttttat
     1681 ttttttagct tccttactat actcaagttt tattatacct gtttctaaaa gatatttaag
     1741 tgtagataaa gctttaaaat gctgaatttt tctattgata gaaaaacgct tgcgattgtt
     1801 tttagctagt aaagtaagag cgtaagaact tgtttcatcc aaggcgaaat aacttttaat
     1861 ttttagataa tcatcaagca aaattcgctc tatatttgta aatacatcgt cttcaaaatt
     1921 taaaatgttt aatttttcaa aaccttcaaa cacactataa aaatcaaaaa gcttacttaa
     1981 agacaaattc ttatgcaaat ctacaaagtt cttaaatttt atatttttcc ttttataaag
     2041 catttttata gtataatttt agcaaatttt tataaggatt gtatttgcaa atttcagatt
     2101 taaaaaaaga attgatctta aaaaaaggta ttttgcattt tgacttcaca gcaagtgctt
     2161 tagctctaaa atgtgtagaa aaagaaattt caaaaattct cccaacctat gcaaacacac
     2221 attctgatag ctctttgaat tcttttaaaa ctcaacaaat ttacgaacaa gcaagaaaag
     2281 atataaaaaa aagtttatca ttagatgaaa attttgccct tatagcctgc ggaacaggat
     2341 caagcagtgc tattaaaaaa tttcaagaat tgatcggcat ttacattccc cctcttgtaa
     2401 aagaaagata ttttacgcaa attgataaaa ataccttacc tttagttatc gtagggcctt
     2461 atgagcatca ttctaatgaa ctttcatttc gagaaggctt gtgcgaatgt attagaattc
     2521 ccttggataa aaatggggaa attgattttg attttctaga aaaaacttta caaaaaaaca
     2581 aaaaaagaaa aataatcgct agcttttctt tagcttcaaa tgttactggg atattaagtg
     2641 attacaaacg catttctgaa atggttcgta aatttaaagg gatagttgct tttgatgcat
     2701 ctagtttcat tccctataaa aacatatctt gtcaatacta tgatgcgttg tttataagtt
     2761 ctcataaatt aatcggtggt attggcggtt ctggactttt agctatcaaa aaagatcttt
     2821 gtggaaacaa gcctagcttt gcagcaggtg gaactgtggg ctatgtttct cgcacttcac
     2881 aatgctacct ttgcaatgaa gaagctttag aagaaggagg aacacctgga attttacaac
     2941 tcattcgcgc tagcttagct tttaaaatca aagattctat agggattaaa aatatagaaa
     3001 aaaaagaaga aattctaaaa gattattttt ttgaaaaact aaaaactata cctaatttaa
     3061 ttttatacgc aaagaattta aaaacccgat tgcctatttt tgctttcaat atcaaaggaa
     3121 tttctccttt tgatatcgct tacgaactta gtaaaaaata ccacatagaa acacgcgctg
     3181 gatgtgcttg tgctgggcct tatggtcatg atttgctagg cttaaaagat aatcaaaaac
     3241 ttaaaacaaa accaggttgg ttaagaataa gcttgcatta tacgcatgaa aaagaggata
     3301 ttgattattt ttttaatgct ttaaataaaa ctataataaa attatcacat taaaatatta
     3361 tagttttatt attatatata aaaattctat cttcaaaagc caaatcaagt gcttttgaaa
     3421 gaacatcttt ttctatattt ctacctgctt gctgcatatc ttgccaagta aattcatggt
     3481 ttacaggcga aacagcttga gtgataatag gaccttcatc aagattatta tttacaaaat
     3541 gtgccgtagc tccaattatt ttaacccctc tttcaaaggc ttgtttataa ggatttgctc
     3601 ctataaatgc aggtaaaaaa gaatggtgaa tatttataat cttgccttca aaatgcctaa
     3661 caaaatcagg agataaaatt cgcatatatt ttgctaaaac caaataatca aatttatatt
     3721 gttcaagaca ttttaaaatc tgattttctt gctctttacg atctaaattt tcagcgctga
     3781 taaaatgata aggaatttca aatttctcaa ctaaatcctt taaagagttg tgatttgaaa
     3841 tcacagcttt gatatttgct tcaagttcgt tactataatg ctttattagc aaatctccca
     3901 aacaatgact ttctttagta gcaaaaacaa cgatatcttt ttttctcttc tcgcaaagct
     3961 ctatcaaggc ttcttgtcca agcatagcct caagcgttcc tataaaagct tctttatcaa
     4021 actcaccttc taaaagagca cgaaaaaaaa acattccttc gcctacaaat tcatcgtttt
     4081 ttactatatt gatatgatat ttaaaaataa catcagaaat tctatagatt aaaccttttt
     4141 gatctttggt gcaaattttt aatacagaaa tcatttagct aaacctttta tatattcttt
     4201 taattcattc tctcttgctt cttgaagctt taagccaaga attttaccac aaaatccagc
     4261 atttatgaaa tcttttgcta aaattttact ttcaaactta ttctcataaa gccctaatct
     4321 tttagcttgc tcaatacgct ttttactcca aagtccaagc catttcttca aaggcatttc
     4381 aaaagcaatt tttgctagct caaaatcact tatatcatca agataaaaag cttgatttgc
     4441 gtattttagg tattcttttt gaagtttggt tcttttaaaa aatatatctt tttctaaatt
     4501 aaaaaaattc aaatacaaat acaagaataa agcatcgctt tttacaaatt ctctactttg
     4561 tctgagcaaa ttttgaaatt ccaaactctt aaaagtactc tcaaagccga aaatctgttt
     4621 ttctaagtca agttcttgca aatatctata gccaacatca agtctagggc ttttaaagaa
     4681 tttataaagc tccgcattga tcctatcttt gctaagatca gttatatcca tactttgcat
     4741 caatttcaag ctttcgctag ttatcttaaa gttaaacctt gaagcaaata ctaccgctct
     4801 taatactctt aaactatcct cttgaaagct ttgtttatca atatgcctta aaaagcctgc
     4861 tcctagatct tttaatcctc cataaaaatc taaaaactca tcgttaaaaa gattaatcat
     4921 catagaattt atggtaaaat cgcgtctttt ggcgccaagt ttttcatcat tacaaatttg
     4981 aacttcaaaa cctttatgtc catagcttat tttattttcg gttctagcaa gagctaaatc
     5041 ataattttta aacttataca caaaaaaact ttttccaaag ccttgtgcgc ccaatttttg
     5101 cataatcttt tcaaaatctt taggttttat atcataaagc tctatatcat agtcacaaat
     5161 ttttaagcct aaaaacaaat ccctaacgct acctccaacc aaatacgctc gtttggtata
     5221 aggctttaaa aactcagcaa taaactgtaa atcgggatta ttttttaagc ttatcttcga
     5281 tatttgcaag taaaaactct aaaaaattta tggtcaagtt taacctattt tcaagatcat
     5341 ctttttttat gctatttaaa ccttcaaaaa gaactaaaat tctctctcta agatgtttta
     5401 aaaaaatatc ctcattaagc gtttgaacct ctgtcataac actaggattt aaaatttcac
     5461 tttgtaaaaa aggctcttct tttttaaact ctttattttc ctgagtagaa atttcaatat
     5521 tattttgtat tttttgctct tcttcaaatt ttgccataga aattttatct tctaagtctt
     5581 gcggagtatc aagctcttcg catacaaact ccataggtgg taattcatct tttatttcag
     5641 tttttctatt taattcttgt tcttttaaaa tttcattttg tcttctttgc tcttccatga
     5701 tagagctaac ttcgctaatg gtttttttag ctaaatcttc caaattcata tttttatcaa
     5761 ccacctttta aattcattaa tttcttcatc gcttttcata ttaataaaaa aatccaacat
     5821 ttgagtgttt aagtctttat gcttggatct aaaaccacta agacgacgaa ccgcatcgat
     5881 agcgttttga ttatccggat cttcttttaa gatattttta taaatttcta aagcttcgtc
     5941 ttttaaccct tgagcctcat agatggaagc ttcagtgact gtatttttca tcactgtttc
     6001 ctaaaatttt tctttaattc tagcaaaaag ctttttaatt tatctttaag aaaataagat
     6061 gttttttaat gtctattttg ttttaaacag tttttctata tattcttttt tttctttctc
     6121 taaactagaa tttaattctt tttgttcttt tttaacttgc gcttttaaat cttgattttt
     6181 aaaatacaca taatcaattc caaaaataac accaattata ataagcaatg ggattaaaaa
     6241 taccatcttt acactttaag aaaattgatt aaatacacta ccatagtagc gaacattctc
     6301 agcattttca tttttttcta tcgtttctat tgcaccacta ttgattgctt tttggatatc
     6361 atcatttaaa tcttgataag aaaaaaccat attaatactg ataatatttg gcaatttctc
     6421 aagcatttta taagagttta actcatcttc taaattttca ctttcaatca caactataat
     6481 cttttcattt tcacaaagtt ctacagaaca aaaaggaatt tcagatatag ccttttttaa
     6541 atcatttata tattcttctt ttgctaaaat caaaacacta gaaagattat tcatcaatac
     6601 tcctaaacat tatactatca ccaaagcctg aaacgataaa atctttattg tttaaaaaaa
     6661 taataaactc actcatcaaa ttttcattat taaaagtttt aacaggctta aaatcacttg
     6721 tgctaaaaac ttcactaact ccagcttcat tatcgctata aacagcgaat tctccactag
     6781 gacttaaagc acaagtatat atcaaaaaat ctttttgcaa aaaattttgc tcttcatttt
     6841 ttacaactcc tatacgccta tccgttccac aacttaaaat aacattattt ttaaaatcta
     6901 cttgatagat attatcttta tgcattttat catagttttt taacatcttc caatttttca
     6961 aatcaaaaag ttctacttcg ccactctcaa aacctgcaac tagtctactc ttatcttcat
     7021 ttaaaactgc atcattaaga ctagaatggg aaaaattaaa tttttttata ttttttaaac
     7081 ttttatcaat caattctatt tcagaaccaa tagaaatcaa aagataagtg ttttcattga
     7141 taaaaaatgc ttttattatg ctattttctt cgagcttttt gatttgtaaa ttttccttat
     7201 aaaaacttaa atttttagca ccaaaatcac cctcgctaag tattaaaagt gtatgtttaa
     7261 aaacatcaat gttataaatc ttagcaaaat catcaccata ataattttta atctttggta
     7321 aagataaaag ttcttttaaa cttttatctt taatgttata ttgtaaaatt tcacctttat
     7381 cagtgcctat atataagttt tgcttatcaa gctttaaagc tgttatatta gcatttaatt
     7441 tcagctcata agcataagac aaaacacaaa aaagactcaa aataaaaaga aattttttca
     7501 tttatttact ttacaccctc attaatcaca tcaattaaat ttgaacgact ttttaattgt
     7561 tcatttttaa attcaggttt aaagctattt cccactaaag gttttgcatc actttgtgga
     7621 acatgacact gagtgcaatt aaaacgacta tcgctaatca tatctcctgt ggttttattg
     7681 tgtctaaaat cataataatg actagcagga agtggagttg caccagcatc tgctgctata
     7741 gccttatcat ggcagcttaa gcacatattg ttatctttag ttataggtaa caaatcttca
     7801 atagcatgcg gaattaatgg tggtgcattt tcataagaac gctcaaaacg agtagattcc
     7861 ccaggttgta aagttgtgaa atttgcttcc actaaattta ctttattttc attttctaaa
     7921 cttgcttttc taagtccaat ttgttccgaa cttaccccac tattcattgc acaagcggca
     7981 aaaaatacca ctgcagcact tcctaataaa accaatttct tcttcattat ttattcctta
     8041 aatcaaaaat attaaaattc aaagcatcat cattacaaac ttctatacat cttgcacacc
     8101 ttatacactc tcctgatttc acgctagtac tttcttttcc aaccatccac aaaacctgtt
     8161 tttcaggaca aatacggata cattcataac atttagtgca tttatcacta tcatgcttta
     8221 ttttaagcaa agcaaaacga gaaataaaag cataaaaagc tcctagtgga caaaaatgtg
     8281 aacaaattgc cctaggactt aaaaaagtat caatacaaaa aagtataaag gctacaaaaa
     8341 tccaagaact tgtagcaaaa ataatccctc tatgtatcat tcctatataa gaaaaacttt
     8401 caaacacagg caatgaaaat acaaaagaaa ggactaaaac caagaccaat acaaaatagc
     8461 gtaaattttt aggcaaaatt aaaaatttat tattaagggt taatttattt cgcacaaaag
     8521 cagcaaaatc tgtgattaaa ttaacaggac aaacccaaga gcaaaaaacc cttcctaaaa
     8581 gcaaaccata gataaaaaat ataatcaaag ctcctattaa agccactaaa tctatactcc
     8641 agcttgctag aatgatttgc aaaaccgcaa aaggatcgct taaaggtatg gtattaaaaa
     8701 gtctagaaga acttaaattt ccctgcaaga taaaatctgt agctttaaaa ctaaaaagcg
     8761 ctaaaattcc aagctgaacg atgcgtctag caattaaata cttcatcaca gttctccatc
     8821 atttaaataa ttggttgctt ttttagcatc aaaatgtttt gaagtatctg cattttttat
     8881 acgaccttca tctttttcat cccagccttt tacataatga gatcctgctt ttcccaatac
     8941 atactccctt ggcaaaacac gaatggccgg tttttcagta atacaagcca gttcacaaag
     9001 cccacaacct acacacactt catgatccac actaggtagt aaaaaagcat gtttggcggt
     9061 gcgttcattg cgtttaagct caagttttaa agccctatct atcaaaggac aagctctata
     9121 acaagcatca cattgaattc cccagtgtgc cacacaagaa gcactatcaa caatagcaat
     9181 acccattttc aaagattcta taccctgctc taaatgcttt ttatctaaag catcagttgg
     9241 acattctcta atgcaaggaa tatccttaca aagatagcaa ggaatttctc ttgccttaaa
     9301 aaaaggcgtg ccattttttg gactatctaa caagctagca agctttaaag tatcataagg
     9361 acaggctttt acacaaagcc cacaacgaat acatttgctt aaaaatctag cttcatcttc
     9421 agccccagga ggacgcaaag cataattatc atcggctttt aaagccaaat tagccaaaaa
     9481 tccacctcct gtacataaac atgcagcctt aaaggcacta acgaaaaatt ctcttctacc
     9541 tttcatttaa tcaaaaccct aaattaagcc ttataaattt ttacagcaca ttttttaaag
     9601 tcagtttgtt ttgaaagcgg acaagtcgca tccaaagtaa ctttattgat atatacattc
     9661 tcatcaaacc acggcacata cacaagtcct acaggcggtt tgtttcttcc acgcatatct
     9721 actcttgctt ttactttacc acgacgagat tccacccaaa ccaaatcacc ttgatttaag
     9781 cctaatttct ctccatcttt ctcactcata tagcaaagtg cttcaggcac agcacggtaa
     9841 agctcaggca cacgcatagt catagttcca ctatgccaat gctctaaaac ccttcctgtt
     9901 gcaagccaga acggatactc tttacttggt ctttcaggtg ctttcataaa tggcctaaag
     9961 aaaattttag ccttattttt aatactgtgc tctttttcat ctttaggagc tattaaatcc
    10021 ccatttgtaa gcattttgtt aaaatcacca taaaaagcaa aatctgaatt tggagccgct
    10081 tttttagcat aataatcaaa tttagtatta aatctccact gtgtttcctt gccattaacc
    10141 acaggccatc ttaaacccct tactttatga taggtatcaa aatccgctaa atcatgtccg
    10201 tgtcctaagc caaatttacg atattcttcc caaagatatt tttgaacgaa aaagccatag
    10261 cctgtaaatt cttttccatc actgccttga atttttctct catcaccttt aacatcggta
    10321 ttatcaaagc cttttgcgat ggcatcgttt ggattaaagc tttttgcttc tttattggca
    10381 aatagtacat caaaaagtgt atcatcttcg ctataaccca tagcttttgc ctcttctaaa
    10441 acacttggca aggtaagctt attatccact ttttgctctt tccaaacttc tttaagctta
    10501 aagcgttttg caaattctaa aatttgccaa gtatcactca tggcagcacc tacaggtaag
    10561 acttgttgtt tccaatgttg agttcttctt tcagcattac cataagcacc ccatttttca
    10621 taaatcatag cgcttggtaa aataagatca gctacttttg ctgaaattcc aggataacaa
    10681 tcacttacaa caataaaatt atccatttct cttgctgctg caatccagtg atttgcattt
    10741 gcagtgtttt gccatggatt attcacttgc acccatgcaa atttaatttt tccatcttct
    10801 aaatctctca tgatattaag ataaggagaa cctggttttg ggttgatagt ctttgcagga
    10861 actttccaaa ttttttcaga aatttctctg tgttttggat tggctacaac catatctgca
    10921 ggcaaacgat gtgagaaagt tcctacttcc ctagctgttc cacaggcact tggctgtcct
    10981 gttaaagaaa aggctccact acctggttta gcttgctttc ctagcaaaaa atgtaccata
    11041 taagcttgtt catttaccca agaacctctt gtgtgttgat taaagcccat agtccaaaaa
    11101 cttacgactt tgcgattttt ctctatgtaa agattagcta attcttgaag ttttttctta
    11161 aaatcttcca aagactcatt atcatcacct ttggctactc ttgcagtgta ttctaaagta
    11221 taaggggcta aacctttttt aaattcgtca aaagaaattt cccagttttt atcagccaca
    11281 ccttgatgtt tcatttcaaa tttatcaccc gctttaacgc caagataaga taaagaagta
    11341 gcctcttcat cgtctaaagt gattacattt tctttttcaa ccgtatcttt ttcactttct
    11401 ttaaattttg gatgatttgg attatttctc ataccataac caatatcagc ataaccagtt
    11461 gcaaatacgc agtgatcttt gataaatttc atatccagag cctctggatg attataaaca
    11521 atctctcttg ctatgtagtt ccaaatagcc aaatctgtat ttggtttaaa aataatttca
    11581 atatcagcaa tatttgaagt acggttagaa aaagtgctta gattcacaac tttaacctta
    11641 tcaagattgc ttagttttct atcacttact cttgaccaaa ggattgggtg catttcagcc
    11701 atattagctc cccaagtgat aatagtatct gtaagctcta tatcatcata acagcctgat
    11761 ggctcatcta caccaaaagt ttgcataaaa ccaaccactg cagaggccat acaatgtctt
    11821 gcatttggat cgatattatt tgttctaaaa cccgcttttg caagctttaa agcagcataa
    11881 ccttcttgga tagtgtattg cccactacca aaaatcccta tacctgtaac gccgagttca
    11941 ttgtaggctt ttttaaattg tttttccatt tcatcaaagg ctctttgcca agaaacttgt
    12001 tgaaatttgc cttttttatc aaattcgcct ttttcattca tgcgaagcaa aggcataaca
    12061 agacgatctt caccatacat gatcttagca ttaaaataac ctttgataca attaagtccg
    12121 cgatttacgg gtgctgcagg atcacctttt gttgctacga ttttgccatc ttttctagct
    12181 atcataattc cacagccagt tccacaaaat ctacaaacag ctttatccca tttccaatct
    12241 tcttcttgcg cgccaagcat agagcttgga acactaagcc ctgcaacact agcagcactt
    12301 gcaatagcgg tatttttaat aaaatccctt ctattcatcc ttattcc
//
LOCUS       DARGEM010000044        12210 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.044, whole genome shotgun sequence.
ACCESSION   DARGEM010000044 DARGEM010000000
VERSION     DARGEM010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12210
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.044"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(7..744)
                     /locus_tag="SFZ78_000915"
     CDS             complement(7..744)
                     /locus_tag="SFZ78_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG8211797.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
     gene            complement(737..1519)
                     /gene="fdhD"
                     /locus_tag="SFZ78_000916"
     CDS             complement(737..1519)
                     /gene="fdhD"
                     /locus_tag="SFZ78_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG8211798.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            complement(1686..2618)
                     /locus_tag="SFZ78_000917"
     CDS             complement(1686..2618)
                     /locus_tag="SFZ78_000917"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG8211799.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(2615..3256)
                     /locus_tag="SFZ78_000918"
     CDS             complement(2615..3256)
                     /locus_tag="SFZ78_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8211800.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(3253..6057)
                     /locus_tag="SFZ78_000919"
     CDS             complement(3253..6057)
                     /locus_tag="SFZ78_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5515..5517),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG8211801.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIN
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(6057..6248)
                     /locus_tag="SFZ78_000920"
     CDS             complement(6057..6248)
                     /locus_tag="SFZ78_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG8211802.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            complement(6223..6936)
                     /locus_tag="SFZ78_000921"
     CDS             complement(6223..6936)
                     /locus_tag="SFZ78_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8211803.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIALAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            complement(7240..8388)
                     /gene="nspC"
                     /locus_tag="SFZ78_000922"
     CDS             complement(7240..8388)
                     /gene="nspC"
                     /locus_tag="SFZ78_000922"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG8211804.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMFLDRKNELQMIREFSYKDYSLRN"
     gene            8512..10053
                     /gene="cueO"
                     /locus_tag="SFZ78_000923"
     CDS             8512..10053
                     /gene="cueO"
                     /locus_tag="SFZ78_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG8211805.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            10055..10276
                     /locus_tag="SFZ78_000924"
     CDS             10055..10276
                     /locus_tag="SFZ78_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG8211806.1"
                     /translation="MVKVEFLGPINKENLELKVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            10277..10723
                     /locus_tag="SFZ78_000925"
     CDS             10277..10723
                     /locus_tag="SFZ78_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG8211807.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            10727..11917
                     /locus_tag="SFZ78_000926"
     CDS             10727..11917
                     /locus_tag="SFZ78_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8211808.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLAPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIKFENGRILANLEGKKKGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
BASE COUNT         4133 a         2290 c         1695 g         4092 t
ORIGIN      
        1 gaagatttat ttttttcctt ttaaaaacaa ttctttaaag cgtttattag cgtattcttc
       61 tatgtctttt tgcaaaatag agtaattttc catcaattcc atagctctag gagtaagttt
      121 tgttcctgat tctttagagc gtccttgtct tgtgctaact aaaatttctt gagaattttt
      181 ttgtaaggtt tgtaaatgca tccaagcttt tttataatta atccccataa gtttagaagc
      241 atgtaataaa ctacctgttt gtccgataag ttctaaaagt tctgtttttc ctcgaccaaa
      301 aagcaaatct ccatccgcat tttcaatcca agtttttgtt cttactataa attgcttacc
      361 ttttttttct ttaaaacaac caagttgaca atactttaca tcaaccttat aagtttttaa
      421 agctgaacgc atacttttaa gtccacaacc ttctttagca atatctcttg catctttaca
      481 aaaaattcta cgcttttcat ctaaactagg ttctattttt ttaagcactt caatctttgc
      541 tttttcaaaa tctaaatgtc caaattgccc caactcgcaa ttatcaattc tcatgtgatt
      601 ttcatcggct aattgtccga ttttttctat atttatatta aatttctttg caattttaaa
      661 agccgtacca caatctaatt tttcattgct atttaacaat tctctcatat atgagatgat
      721 ttctttttct tgatttttat ccatgaattc taaattctcc actataaata ttgatcttat
      781 tttctctggc aaaaccacaa agcgttaaat caaattttct tgctatcata acccctaaac
      841 aagtaggagc cgtgcgtgaa acaagcactg gaattttatg cataactgct ttagctacca
      901 tttcagaact tagccttcca ctaaccatta aaaaacattg acttaaatca accccagcta
      961 aacgtgcttt tcctaaagct ttatctatgg tattatgttg agctatatct tcacctataa
     1021 aaaaagtttt ctcatctaca aaaagcttag ccgtatgcac acagcctgtt ttctcgtaaa
     1081 gctcgcattg agtataaaaa gtactcattt gttttaaaat ttcatctttg ctaaattttg
     1141 catcagaact aattttactc gcttcaatag cttctggatc gatattggca gtatgtgctc
     1201 taccgcaacc acttataact acaccttcag cattaagctt tgctaaattt tctttatcaa
     1261 tctttgcttt aatatgcaca ctcataccat catcttttgt ttctatgctc tcaatatcgc
     1321 ttactttcgc aatgatattt tcactcatta aatatcctat tgctaatgcc tgttcatcta
     1381 caggagttgc cattaaagca cctacttttt catcattaat aaaaatttca agcttaattt
     1441 cacgcactaa agtatcattg catgtaaaag attcatcacc tttatatttt aaaatttgag
     1501 ttgtaaataa cggatccata ccttatcctt taaatatctt taaacaatat tatatcaaaa
     1561 aaacataaat aacaaattta tatatggaaa aatagatttt agattcaact tataaaagaa
     1621 aattcgttct atttatttca aaaaagctta aaactaccgc tatgtaataa catagcggtt
     1681 aaagattaaa ttttcacatt aggatcataa gaaaaactag gttcaatttg ctttttattg
     1741 cttaattctt tataccaata agaatgtaaa atataaacct cttcttcttc tttataacca
     1801 ctaatcatag aatggatact gcctttgatt gcaaatactg ccatataaat atgcacacca
     1861 aaaaacactg cacacactat acccaagaaa ttatgcacta tagctgaaat tcttaaaagt
     1921 tcaatttgag ttaaaccaaa aagaccttga attgccgtgg aattaaaatc aagaaaatac
     1981 ataaatccac ctgtaattat catcaaaaat ccaccaaata cagctatata ataccaagat
     2041 ttttgaccaa aattaaactt acctgcaggt acaggacgtt ttactttgct taaataacca
     2101 cctactatca tcatccatct gatatcataa cttgcaggaa gcattctttt aatccaccat
     2161 aaaaacatag ggattataga gatgataaac aaaatcgttg caaaagcgtg taaattttta
     2221 caaaccctta caaaaactcc acccccaaaa acttctccaa acatcatcac aaaaccagtt
     2281 ggcactaaaa tcacccaaga aatggctgcg ataaaatgaa aaagtctttc aaataatgta
     2341 aaagcataaa ttttctttcc atcgtgtgaa aattgcttag gtcctataac catataatgc
     2401 aaagcaaatg cagataatac cgcaataaca gcgattaaag ctatagtagc tatatattca
     2461 ccttgcaaag ttgtccaaag tttgccaaaa gtatcataat ttgggatatt tgtaatacga
     2521 tgaaaatccc aaatttgagt atcttgtccc attctctcgc taccataagc aaataaactc
     2581 actacgctta ataaaagcgt tacaaatact tttctcataa gcgttccttt cctgtgtaag
     2641 caatcttcca ttccaaactt tccgaaggat ttggaatgcc ataatttcta ttcataagtc
     2701 tattatgata aatctcttct attttagaac tttcacctac taaaagtgct tttgttgaac
     2761 acatcgcagc acatacaggg acttttcctt ctgcgatacg attttgacca taaagttctc
     2821 tttctttttc tgaattcgtt gcttcagggc cacctgcaca catagtacat ttatccataa
     2881 tgcctttatt tccaaaaaca ctatcttttg gaaattgtgg tgcaccaaaa ggacaagcat
     2941 aaagacaata tccacaacct atgcaaattt ctttatcatg caaaacaata ccatcagcac
     3001 ggatgtaaaa acaatccaca ggacaaacga tagaacaagg agcatcatca caatgcatac
     3061 aagaaataga agttgaaact tcttttcctt gaattccttc atttaaagta atcacacggc
     3121 ggcggcgaat atgaatagga agctcatgtg cttcatcaca agctaccgca caaccattac
     3181 aatcaataca acgctcatta tcacaaaaga atttcaagcg ttctttttct aaatttgcaa
     3241 aatttacctt actcattttc catccttact gattctacaa agcccgcctt tagtctctgg
     3301 aatctgacac ataatatcat aaccataatt tgttaccgta ttagcacttt ctccgcttgc
     3361 ataaggctta gttccttctg ggaaattgtg cgttaaatcc acgccttgca taactcctgt
     3421 aaaatggaaa ggcaagaaaa tcatatcttt tgctacacct ggattaacct tcactcttac
     3481 atgaatttta gtgccttctg gagaatgcac ccaaatcata tctcctgctt taatgtcttg
     3541 ctcttttgct aattcaggat tgatctcaca aaacatttca ggtgttaaac gcgttagata
     3601 catagatgct ctattttcca tacctgcacc atttaaattc acaagtcttg cggtaacaag
     3661 attaagcggg aattctttag aataatcctt agcttgttgc acagaaacaa atttagtatc
     3721 cacgcgataa agtgcttttt gatcttcaaa acttggatat ttttgtacca aatcgtttct
     3781 tggagaatgt aaaggctcac ggtggagtgg aattttatct ttaaaagtcc aaactacagc
     3841 tctagcttta gcatttccat aaggaactat gcctttttct atacatttag ttgctatgat
     3901 attgctatca tcataagacc aagttgatcc cattttttct ttttcttgag cacttaaagt
     3961 aatacctaaa actttttcta tattatcttt agtaatttgt ggataacctg tattaatagg
     4021 cgaatttaaa ggtgcatttt tagcaagcaa actctctcct tcatactcaa gtccaaaatt
     4081 atttctaaag cccataccac cttttgctac ttcaatgtcg gtattataaa gtacaggaga
     4141 acctggatgc ttatcactcc agcaaggcca aggaagccca taatactcgc ccgcaacttc
     4201 gtcttttcct tctaaagtta cctcatcaaa tttatcccag tataaagtat gttttttaag
     4261 cctttcagga ctccaaccat taagccctat acttctaact gcttttgcaa tttctcttgt
     4321 tgcattttca ggccaaacga tctcaccttt ttcatcgcgt aaagtcttgg taaagtcttc
     4381 ataaaagcct aattttttag caagctcaaa taaaatttct tgatcttcca tactttcata
     4441 aagtggatct acaactttaa atctccattg cccactacga tttgtagctg ttacacttcc
     4501 acttgtttca aactgtgttg ctgcaggtaa aagataaatt ccatcttttc tttctgcgat
     4561 aatccctgct tcatttacaa aaggatcggc taaaactaaa agctctaaag cttccaaacc
     4621 ttctttaact tttacttgtt gtgcagtcga agtaatacca tttcccataa ctactaaagc
     4681 ttttaaaggc gttcctgcat tatcgatagc atcatttcca tcttttccat ttaaagccgc
     4741 tgcccaccat ctagcaagtg aaagtccagt tttatgcatc caatctttac ttacaaaatt
     4801 tcctaaaagc cactcataat ccacacccca aattttggca tagtatctcc aagtcgcttc
     4861 atttaaagga taataaccag gtaaattttc actcaaacaa gccatatctg aagcaccttg
     4921 aacattatcg tgtccgcgta agatattaac tccaccacca aatttaccta tatttccaag
     4981 taccatttgc acaataggtg ctaaacgtgt atttgaagtt cctacagtat gttgagttaa
     5041 acccatagcc caaataagcg tagttggttt gtttttagct acttcgtgag tgatttgcac
     5101 caaaagttct ttagagatcc ctgtaacatt ttccacttct tcagctgtcc attttgctgc
     5161 ttcttcacga attttatcaa ttccaaaaac tctttcatca agatattttg tatcttccaa
     5221 gccttcatca aaaatgattt ttaacattcc atacatgaaa gcaatgtcag ttcctggacg
     5281 aattcttgca taaatatccg cttttgctgc actttttgta aatctaggat ctacaacgat
     5341 aagctttgca cctttttctt ttgcttttaa gaaatgtcta aaacccacag ggtgatttac
     5401 cgctggattt gctccaatga taatgataca tttacttctt tgaatgtctc caagatggtt
     5461 tgtcatagcg ccataaccaa atgtattcgc cacaccggcg actgttgcgc tgtgtcaaat
     5521 tctagcttga tgatctacat tgttcgttcc aaaaaatgct gcaaattttc ttatataata
     5581 agcttgttca ttattaagtt ttgcagaacc taaaaacata acactttcag gattttcttt
     5641 acgataagca gctagttttt ctccgatctc acttaaagct tgctcataac ttatgcgttt
     5701 ccattctcca ttttcttttt tcataggata ttttaaacgc acatgtgaac gcaccatatc
     5761 gatcatatca gatcccttgc agcaatgtcc acctgaactc acaggatgat cttgagcaat
     5821 ttcttgacgc acccaaacac cattttgcac ttctgcaata atcccacagc ctacagaaca
     5881 ggctgtacaa actgttttta cttttttact accttcatac gcttctttaa gctcatcagc
     5941 actcgcttct cttaaagttt cacttctagc aagcaacggt gttgctaggc ttgaaagtgc
     6001 tgccatttta agaaaagaac gacgcgtaag cttgatattt tcacctacac ttgacattac
     6061 tcagccttta tataataatt ttcccaatta gcacttcttt gaaaaagcac ttcttttttc
     6121 ttacttttac ctttaaccaa atcttttctt tcttcatctt tagctagagc taaagttgtg
     6181 ctaccaagca ctccagcagc ccctaaggca aaagcggatt ttttaagaaa ttccctgcga
     6241 tttttcacga gtcctccttt gtttatttgc ttctcttctt aaaaattctg aacgcgatag
     6301 atcgttttgc acttttttag aatttatttt tgcaggtttt tctacttcaa agcaaagtct
     6361 ttcaaattcc ataaaagcca atgcaatact tgcaatttcc ttatataaat tcgcattttt
     6421 attcatgaaa acatcgccta aaaactcatc aatgctttta ttgatcactt tttcaaaaag
     6481 ctctttggct aaatcatctt cattttgcct taaaaattca ctcatcaaca ataaacaaaa
     6541 tccaacacta tcttcacttt ctttaaaaaa tttttcattg cgtcttattt tacttttgac
     6601 taaaatttga cgcacacaaa gtaaaggatt tgaattttca aaaccttctt ctatgtaaga
     6661 aaaagtcgtt ggaatgctgt ttttaagact taaaaaaagc aaatcgtatt ctttaaaaaa
     6721 tgcttgtata gaattttcat catctaaatg cttaagcaag atatcaaaat ttgattttaa
     6781 attttcatca aataaacatt cttgcattgt ctttaaatac tcttgtaatt ttgacaatct
     6841 ttcttcagaa aatgaaaaaa caaaaagctc tcctagacat tgataataaa gacttctagc
     6901 taatcttaat ttttccaaat ccattaaagc ccccatgcat tcaaaatttt caaaaatagc
     6961 tttaaatttt gcttgaatga atattataca aaatatacct aatattcatt ttaaagccga
     7021 tttttaaatc gatttatctt aatactattt gatttaaaaa tcactgaatt tcaataaaat
     7081 tccacaagga tttaaaatat taaaaaatca taccaaagta ttaaaaatta gatatttgag
     7141 ttgattttat atttgaaaaa ataaaatact ttgcataaaa tttatatctt tgattctctt
     7201 ccgagtaaaa ttaacatttt atgcaaatta taaataatac taatttctta aagaataatc
     7261 cttataagaa aattctctta tcatttgaag ttcattttta cggtctaaaa acatgagatt
     7321 tggaagtctt atgccattaa aagttgtgtt tttcacaatg gtgtaatgaa tttgatctaa
     7381 aaaaacaatt ttatcgccga ttttaagctt tttatcaaag gcatattctc ccattacatc
     7441 acctgctaaa caagtatttc cagtaagtaa ataggcaaat tcgttttctt ttaagtctga
     7501 aattttttca ttttctcttg tggccaaaat tctagcattt aaaacttcac ttgtataagg
     7561 catgatgata gtatctggca tatgtgcttc gcttgaagta tctaaaatag caatttgttt
     7621 ttcattttct atgatatcta ctacactagc aaccaaattt cctgtttgcc aacccactgc
     7681 ttcacctggt tcaagataaa cttgtacacc atatttatcg ctgaaatttt tacacaaagc
     7741 aataagtttt tcaacatcat agcctttttt ggtgatgtga tgtcctcctc caaaattcac
     7801 ccatttcatt tgccctatcc atttaccaaa tttctcctca aaagccttta aaacagcctc
     7861 taaagcatca gcactttctt cgcaaagtgc gtgaaaatga agtccttcta tagcatttaa
     7921 atccacattt tcaaaatctt tagcacgaat tccaagtctt gagtatcttc cacaaggatt
     7981 gtaaagttct tttggggcta gagaaaattc aacattacaa cgaagaccta aggaattttt
     8041 ttgtgtttta gcttgaaatt tatgaaattg agctaaagag ttaaacacta tatgatgaga
     8101 taaactggct atttcaccta tttcatcttc tttaaaagca ggcgaataag tatgaatttc
     8161 tttatccatg tattctttag caaattttgc ttcccaaagt ccgctacaag tgcaaccttt
     8221 taggtattct ccgacaattt tcatagctcc tgaaaaagca aaacctttta aagctaaaag
     8281 cactttagca ccactttttt caccaacact tgctaaaagc tcacaatttt ttcttaattt
     8341 atcttcttct aaaatataag ctggagtttg aattttttca taaaacatta tttttccttg
     8401 attaaattgc taaaatcata acaaaattaa accaaatttt caaaataaat atttactaaa
     8461 actaaaaaaa taatgactat aatataaaaa atcaagcaaa aggaaaaact aatgaataga
     8521 agaaattttt taaaatttaa tgcactcact ctagcaagta tgggtgtagc ctatgcaaat
     8581 cctatgcacg atatgcactc catgcataaa aatcattcta taaatcatga cttagatact
     8641 tcttttatca actttgctcc aaaaaattta aaacttttag atccaaaaca attcccccaa
     8701 ggagaaattt taaaagcctt gcctttactc aaaaatgaaa gtaaagaaaa aaatattttt
     8761 cgtgctaccc tagaaatcaa agaaaatcat atagaactta tcaaaggtaa aaaaacctta
     8821 ttttatactt acaatggcct cgtgcctgct ccaaaaatag aagtttttga aggagataaa
     8881 cttgaaattt tagtcaaaaa caaactcaaa gaagctacaa ctatacattg gcatggcgtt
     8941 cctgtaccac ctgatcaaga tggaagccca catgatccta tcttagcagg ggaagaaaga
     9001 atatatcgtt ttgaaattcc tcaagatagc gcaggaactt actggtatca tccacaccct
     9061 cattataccg cttctaaaca agtttttatg ggtttagcag gggcttttgt gatcaaagca
     9121 aaaaaagatg ctttaagtca tttaaaagaa agagatttga tgattagcga tttgcgtctt
     9181 gatgaaaacg ctcaaattcc gaacaacaac ctaaatgatt ggctaaatgg tagagaagga
     9241 gaatttgtac tcattaatgg acaatttaaa cctcaaatca aactcgccac aaacgaacgc
     9301 atacgcattt ataatgctac tgcggcaaga tatttaaatt tacgcataca aggagctaag
     9361 tttatacttg ttggtactga tggtggactt atagaaaaaa ctatttataa agaagaactt
     9421 ttcttaagtc ctgcttctcg tgcagaagtt ttaatcgacg ctccaaaaga tgggaatttt
     9481 aagctagaaa gtgcttatta tgatagggat aaaatgatgg taaaagaaga acctaatacc
     9541 ctatttttag ctaatattag tctaaaaaaa gaaaatgtag aacttccaaa aaatttaaaa
     9601 attttcaaac cttcagaaga acctaaggaa tttaaagaaa taatcatgag tgaagatcat
     9661 atgcaaatgc atggtatgat gggaaaaagt gaaagcgaat taaaaatcgc tcttgcgtct
     9721 atgtttttaa tcaatggcaa aagctatgat ttaaaacgca ttgatttaag ctccaagctt
     9781 ggagtagttg aagactggat agtgataaat aaatctcaca tggatcatcc tttccacata
     9841 cacggcacgc aatttgaact catctcatca aaactcaatg gcaaagttca aaaagccgaa
     9901 tttagagcct tcagagatac tataaatgtg cgtcctaatg aagaattaag acttagaatg
     9961 aaacaagatt ttaaaggact tagaatgtat cattgccata ttttagaaca tgaagattta
    10021 ggaatgatgg gaaatttaga agtaaaggaa taaaatggta aaagtggaat ttttaggccc
    10081 tataaataaa gaaaatttag aacttaaggt aaaaaattta aaagaattaa aagaaatttt
    10141 gcaaaaagat gagagtttaa aagaatggct agaactttgt gctgtatctt taaatgatga
    10201 aatcattttt gatgaaaaca ccaagttaaa agatggtgat aaaatagcac ttttaccgcc
    10261 agtttgtgga ggctaaatga aacattttac actttatcaa ggctctttag atattcctaa
    10321 aatttatagc caatggtatg aattttccaa ggataaaaac tgcggtgctt tactgacttt
    10381 ttgtggtatt gtgcgtgaag aaggaggtat tgaggcactt agttttgata tttatgaacc
    10441 gcttttaaaa aaatggtttg atgagtggca aaaaagagta gattttgatg gtattagctt
    10501 gctttttgct cactctatag gcgatgtggc ggttcatgaa agctcgtatt ttgcaggaat
    10561 tttaagcaaa caaagaaaat taggacttaa acttcttaat gaatttgttg aagattttaa
    10621 agcaagtgcg cccatttgga agtatgatgt gataaacaaa gaaagaattt atgccaaaga
    10681 aagatcaacc aaactttgcg gtgcaggact tttaaaagga taaaaaatgt taatgtctta
    10741 tgaagaaagt ttaaaaattt tacattctca tattaaaact tatgaaaaga ttgaaaaaat
    10801 agctcttaca gagtgtttag gacgcatttt agctcaagac ataaaagccc ctaaaaatca
    10861 gcccgaattt ccaacttcgg ctatggatgg ttatgcgatc aaatttgaag atcaagataa
    10921 gcctttaaaa attttaggta tcacacctgc gggtactatg ccacaattta gcgtgcaaaa
    10981 tggtacttgt gtaaaaacct ttacaggctc actcatgagc gaaggaagcg atactttagc
    11041 ccctgttgaa aatgtacgcg tagaaaatga tactcttttt atagaaaaaa aagttcccca
    11101 agcttttgcc gtgcgtgcgg taggagaaaa ctataaaaaa gatgaaattt tactcaaaaa
    11161 aggcacaaag ttaaattata gcgagatagc tcttttagct gaacttggat tttttcacat
    11221 tagtgtgttt ataaagccta ttgtaggggt tttaagtagt ggaagtgaga tcaaagatct
    11281 aggagaagcc ttggaaaatc ctgctcaaat ccgctcttca aatcatatcg ccatagctaa
    11341 tttagctaaa aatttaaatt gcgatacaag ggtttttcct cttttaaaag atgatgagaa
    11401 agccactttt tccacccttg aaagtgcttt gcaaagttgt gatattttgg ttacaacggg
    11461 cggggtttct atgggagatt ttgacttttt aaaaaaagcc atcaaagaat acgaaatcat
    11521 catcgataaa gccgacataa aaccaggtag acatatcaaa atagctaagg ctaatgaaaa
    11581 attcatcatc gccttaccag gttttcctta ctcggctatg gtaatgttta atctttacac
    11641 aagagagatt ttaaactctt ggttacttca gcctaaagac tatatttgca aagccttttt
    11701 acaaggaagt tacaagaaaa aaacacctta tttggaattt gtcgcttgta acataaagtt
    11761 tgaaaatgga cgcattttag ccaatcttga aggcaaaaaa aaaggctcta gtgcgattat
    11821 aaacaatctt aacaataaag ctgcccttat ggtggtgcca aaagaatgtg aaattttaga
    11881 aaatgaaagt ttagtggata ttatctttat gccttaaaat tatttaaata attttatttc
    11941 gattttaatc aaccctaaat ttcaataagt ttcaaatccg caacctcctt ttagtggagt
    12001 aattagccct agcggagttt caatccacta gggtttattt tagtcccttt ttaaatttct
    12061 ttatggtaaa atagatattt accagataat gaaaatttcg gggttttttc atgaaaaata
    12121 gcaaaaatta tgctataatc tcataagaaa tttaaaaagg gactaaaata aagagtttgc
    12181 gggactctgc ggggttacaa tcccctaaaa
//
LOCUS       DARGEM010000045        12053 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.045, whole genome shotgun sequence.
ACCESSION   DARGEM010000045 DARGEM010000000
VERSION     DARGEM010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12053
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.045"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..987)
                     /locus_tag="SFZ78_000927"
     CDS             complement(<1..987)
                     /locus_tag="SFZ78_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEG8211809.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDV"
     gene            1146..2084
                     /gene="rsmH"
                     /locus_tag="SFZ78_000928"
     CDS             1146..2084
                     /gene="rsmH"
                     /locus_tag="SFZ78_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG8211810.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            2084..3022
                     /locus_tag="SFZ78_000929"
     CDS             2084..3022
                     /locus_tag="SFZ78_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211811.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLKELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKGLTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLCAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(3010..3501)
                     /locus_tag="SFZ78_000930"
     CDS             complement(3010..3501)
                     /locus_tag="SFZ78_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211812.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
     gene            3651..7403
                     /locus_tag="SFZ78_000931"
     CDS             3651..7403
                     /locus_tag="SFZ78_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG8211813.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDESSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLKFILNQLLNFKDKNLSFKRDYKTLS
                     VEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKKVEKYTF
                     YKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSALKDKLNNENILKFKILDNACGSG
                     HFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNHIKDFVQDYEVDESDILKRLL
                     LKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFIEHHIKCGNALINSNLSDFKDLI
                     KQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPKLNKLNLY
                     LNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNYELEFPEI
                     VENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNLLAKDYIK
                     QNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAYVLPSAL
                     MFEDGSLTLRKEILENKTLEYFYSFENNKAIFIDVHRSYKFALMQVKNTQANHTHKIK
                     MMFYKTDMNSLKNKDEILTLSLKDIKKLSPTHLALMELKDKQALEILRKSYNAFQNLS
                     FDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFNANFSQTTYFLEKAKLDEH
                     LKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKIASDTNERTLIASLLPKNCGGAD
                     STYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFIIRNMVQINVSKSYLER
                     IPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNRHFDELKQEFNIKNEEIPKTKKAY
                     NILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLLKTI"
     gene            complement(7431..8621)
                     /locus_tag="SFZ78_000932"
     CDS             complement(7431..8621)
                     /locus_tag="SFZ78_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG8211814.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANVAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLVHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(8635..10140)
                     /gene="pta"
                     /locus_tag="SFZ78_000933"
     CDS             complement(8635..10140)
                     /gene="pta"
                     /locus_tag="SFZ78_000933"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG8211815.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLEEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYETRKSKGMSLEEA
                     KILVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            10230..10928
                     /gene="flgH"
                     /locus_tag="SFZ78_000934"
     CDS             10230..10928
                     /gene="flgH"
                     /locus_tag="SFZ78_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG8211816.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(10958..12031)
                     /gene="ispG"
                     /locus_tag="SFZ78_000935"
                     /gene_synonym="gcpE"
     CDS             complement(10958..12031)
                     /gene="ispG"
                     /locus_tag="SFZ78_000935"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG8211817.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
BASE COUNT         4606 a         1872 c         1581 g         3994 t
ORIGIN      
        1 aacatctcca tttttagctt tattcaaaag atcaattgga taataaacat cagattcact
       61 aatattttga tctttttgaa aattatcttt cccatttttt aaatctaaaa atttagcatt
      121 agccacattc tttagttgca ttaaggcgta atctttagca acttcatttt tagcagactg
      181 aaaatccatc actttacctg caaaatcttt atattttagt ttattttcat cttgattata
      241 aaatttttct aattctttgt cgtcaatttt ctcattgcta actggcaaaa aataagttga
      301 aatttcatat atttttttag ttttataatc ttctttatgt tcattccaaa gcttttttaa
      361 atcctcttcg ttaatcttaa tatttttttt gtcataatca atttttgcaa tacttaaagc
      421 atcttgcata aaataactag aagctaacat ttttaattcc tcatctttgc taggaatatt
      481 aaaaatttga ttaagtttat cggtaattac ttcatttgca agttgtgttt cataatcttt
      541 tggagttaaa ttattggcat ttaaaagttc ataataaatt gttttgttaa aatctcctgt
      601 aggatcttga aattctctag tatttgcaag tttttgtaaa atttcattct cgtttacgcc
      661 aatacccaaa tctttggcaa aatttaacaa aagcttatct tcaacaagag agcttaaagc
      721 tatattttta atgcctagtt gctcagcatt ttctggagtt aaagcaccat tgctaatttg
      781 attataataa cttaaaattt gtctatatct agtatcaaat tcactaaaac ctatcttttc
      841 atttcctaca gttgcaacac tcgaacttct attgagatta aaatcataag caccccaacc
      901 taaaaagcca gcgccaacaa aagctatagt actaacccat atagtaacaa caagatattt
      961 tttgtgatgt tgcatccaag taagcatatc attccttgat taaatttaaa ctagatattg
     1021 tatcgtagaa gtgtttaagt ggagtttaat tataaaattt ttaccaaaaa atatttgttc
     1081 tttaaatttt atgattttta caatgaaatt tagttataat tatagtttat aaaaatttat
     1141 taggattgat tttggaaatt cctcatatcc cagttttgct taatgaagtt caagagattt
     1201 ttaaaaatct taaaacaggt tattttttag actgcacttt aggatttggc ggacatagtg
     1261 aagctttgct taaaaatcat cctgatctta aattcattgc ttgtgatcaa gatcaacaag
     1321 ctttagaatt ttctaaaaaa cgccttaaag attttcgcaa taggataact tttatgcaaa
     1381 gtaattttag tgaagtttta gaaaaaattt cacataaaga agaattaaga ggtattttag
     1441 cagacattgg agtttcttca tttcagcttg ataataacga aagaggtttt agtgtaaatt
     1501 ctgacttttt ggatatgaga atgaatcaaa actccaaaat atcggcttat gagattatta
     1561 atacttatac aaaagagcaa ttaacttcca tttttaaaga ttatggagaa ttacatgatg
     1621 cacattttat tgctgaaaaa atttgcctag aaagaagtaa aaatccaatc aaaagtgcca
     1681 aagagcttta tcaaatcata ggaaaaggta aacaaaatca tagaaaaatt tccaaagcta
     1741 ctttagcatt tcaagccatt agaatagaag taaatcaaga acttaaagtg cttaaagatt
     1801 ttcttgaaca tttagaaaat ttaaaaccaa aaaattgcat tttagctatc attagctttc
     1861 attctttaga agatagaata gtaaaacaat ttttcaaaaa atggtcaaaa aactgcattt
     1921 gtaatgaaaa aataatgcgt tgcgaatgtg gaaataacca tagcctagga caaataataa
     1981 ctaaaaaagc tataagtgcg agcaaggaag aacttttaaa aaattctcgc tctagttgtg
     2041 ctaaaatgcg ggctttttat tttaataatt tggacaataa ataatgctag aagatgattt
     2101 tataaaagaa cgccaaaaca tacgccaaaa aatgctgaaa ttttctcgcg ccataaatca
     2161 aggcaaaccg cttgatgatg atttaagaga tgaaatttct agcgatgata ttttaagacg
     2221 tcgttttaaa aaaaagactc ctaataaatt cttaaaagaa ctcgatgaag agtatgagtc
     2281 aaaacatact aaaaaatcaa atatatattt aaaagaagat ctaatcaatg ttaaattaga
     2341 agaaaagcaa tctcttgcta aaaaaatttt ttccaaaatg aaagaaagaa gaaaagaaga
     2401 aaataaaaaa actaaaaaaa attttttatt tagcagaaaa aaagcaaacg aaataaaaaa
     2461 tatccaaacc aaaacacaaa ttcaaacaaa aagcaatcaa gctaccactc aaacaaaaca
     2521 agaaaaaaag ggacttacaa attctataga aaaaattcaa aaaacagaaa ctaaaataca
     2581 aaaacctcta attatagaaa aaaaactaga tgttaaaaat caacctaata tcaagaaaag
     2641 tttagaaaat ttacaaaaaa aaataacacc acaagaaaat aaacaagaac ttccaaaacc
     2701 atctaatcaa gctcaagaaa aacaacaaaa tgatgaagat gctcaaaagg caaaaaatat
     2761 tttactagaa ggcttctcta atgctaccaa agaagataga aacctaaact tcaatcatct
     2821 tctttttgca gctttacttg ttagttttgc attattttta tgtgccccac aaatttatat
     2881 tagaaatcaa atttattatc ttagtagaga gattgctaca ttaagaacag aagaaagtgt
     2941 tttaaacgag gaaaataaag acttaaaaag aagacttgaa aatatgcgat tccaaaatca
     3001 aattttagat tatttagaat gaataatctt atctaaaaca tactgctcta aatttgcttt
     3061 tggaatttct tcttttaaag cttctttata aaattcaccc gccattgtag agtacttttc
     3121 ataagcaaaa taaggaaagt gtaaagccca ggctttttgt attatttttt ttgagattat
     3181 tttgcgagta taaactttaa aaatatcata tcctataaat acacaagcag taaccataac
     3241 agcgctcact atgcttatat gaaagtcaag ctttgttaaa aaataatgag taatcaaaag
     3301 caatggcaat aaaatcacag cgcaaaaaac accaaaataa atataagaat ttagaatttt
     3361 gaaattaaaa tttagcttag aaggatctac aagcattcca tcgttaaaaa gtgcatttgc
     3421 ctctaataaa tctcttataa gaacaggttg ctctgatact ttaaataaaa aacgaaggct
     3481 aaattcttta aattttttca taatccacgc tttatttttt aattaaaatt ttatccaaag
     3541 aaaattaatt ccaactaaaa aatcattttc ataaataagc acaagtcttt aaagtttttt
     3601 agatataatt taaaatgtca aatttttaaa aatactttag aaagaaagcc atgaattact
     3661 atcaagaact taaaaaatac ctcaacaata atctttttac aagctattct ttagaaattg
     3721 actttcctaa gatttataat ttcaacgcaa atcaaaaagc ctttagagat attttaacta
     3781 aaattacaaa aatttacgac aaaaataaat ttataaaaca aaacgaacat caatttgaag
     3841 atgaatttat atcaaaagta ttagaaattt tagggtggtg ctttgtaaga caagatgaaa
     3901 aaatcataca aggaaaattg gaaaaacctg attttctact ttttagcaat gacaaattaa
     3961 aatcaaaata cgaaaattta gacaaagaaa caaaaaaatc aagcaatgat ttcacaatca
     4021 ttttagagtc aaaagcttat aatatagaaa tagacaataa aaaagtaaaa gacaaccctc
     4081 actttcaaat tctaagatat ctaggcaatc ttaagaaaaa ttatggtttt ttaaccaatg
     4141 gtagattttg gcgtttttat gataattcta tactgaattc aaacaaagtt ttttacgaaa
     4201 tcaatctaga aaaaatcatt gaagatcaaa atattgaagc ttttgcgtat ttttatagtg
     4261 tatttagcgc ttttaatttc acagaaaaag aagatcattt agaaataact ctacaaaaca
     4321 ataaactttc aaaaatcaaa atagaagatg atttaaaatc tatcatttac ggaaccaatg
     4381 gaaatgaatc tttatttgaa ttcataggct ctagaattta caataaaaca aaggcggatt
     4441 taaaactaat ctatgaaaat tctttatatt ttatctttag gcttttattt attgcttatt
     4501 ttgaagataa atttgaaatt atactagaaa aacataagta ttttaaaagt aaaatcagtc
     4561 ttagaaccct acttgaaaat ttacaagaag atgaaagctc aagtggtggc tttggagaac
     4621 ttgaaaatat tttcaacatt tacaacaaag gcaaaggcaa ttttgacatg cctgttttta
     4681 atggcggttt gtttgatgag agcaaaaccg ctcttttaag tacaccaaaa atctttaacg
     4741 ataaagattt aaaattcatt ttaaaccaat tattaaattt taaagataaa aatctaagct
     4801 ttaaaagaga ttacaaaact ttaagtgtag aacatttagg cacgatttat gaaggcttgc
     4861 tttcttattt ttttgaaata gcaaatgaag atatttacta tgtaagctat aaagaaaaat
     4921 caaaagaaat agaatgttat tttgataatt atgatttcaa aattttagaa aaatcaaaaa
     4981 aagtagaaaa atacaccttt tacaaaaaag gacaaattta ccttaaaaat actagcaact
     5041 caagaaaagc aagcgcaagc ttttacacac ctcaatccat agctaatttt ttaatccaaa
     5101 gtgctttaaa agacaaacta aacaatgaaa atattttgaa atttaaaata ctagacaatg
     5161 cttgcggtag tggacatttt ttagttggag ttttaaacgc tattacacac attgttttat
     5221 cagattttga tcattttaca aatttaaaag aactttacga agaagaaaaa gaaaatattt
     5281 taaatcatat aaaagatttt gtgcaagact atgaagtaga tgagagtgat attttaaaac
     5341 gacttttact aaaacgcatt atttatggag tggatttaaa cccttttagc atagagctta
     5401 ctaaacttag cctttggata gatagtttta tctttacaac cccactttct tttatagaac
     5461 accacataaa gtgcggcaat gctttgataa attctaacct aagtgatttt aaagatttga
     5521 taaaacaaaa ctcaagcaac ctttttacaa attccataac acaagaattt gaaattttac
     5581 aagaagtatt tgaaaaactt gacaatctaa aagataccaa cgaagaacaa atcaaacaat
     5641 ctaaacaaat ctatcaaaat gaaatcacac caaaacttaa taaactaaat ttatatctaa
     5701 actatatcaa cacgcttcat tttgtcaaca aagaagaatt acaaattcta aaagccctaa
     5761 gtcaagatga tatacaaaat ttaagccaaa atgaacaagc aaaagctatc attagcaaat
     5821 atcaaaaaga atttaatttc tttaactatg agttagaatt tcctgaaatc gtagaaaatc
     5881 aagtctttaa aggctttgat atcatcatag gtaatccacc ttgggataaa actaaattta
     5941 gtgatagtga tttctttccg caatataaaa gcgattatag aagcttaatc gctagcaaga
     6001 aaaaagaaat tcaagataat ttgctagcga aagattatat aaagcaaaat tacgaaaaac
     6061 aaaaagcata tataaatgat ttaagcgagt attataaaaa agcctatcct ttaaataaag
     6121 gcagtggaga tggaaatttg tttcgtcttt ttgtagaaaa aaatctttct cttttaaaac
     6181 aagatggaaa tttagcttat gtgcttccta gtgctttgat gtttgaagat ggaagcttaa
     6241 ctttaagaaa agaaatttta gaaaataaaa ctttagaata tttttatagt tttgaaaaca
     6301 ataaagctat ctttatagat gttcatagaa gctataaatt tgctcttatg caagtaaaaa
     6361 acacacaagc aaatcacact cataaaatca aaatgatgtt ttataaaaca gatatgaact
     6421 cattaaaaaa caaagatgaa attttaactc taagtttaaa agatatcaaa aagctaagcc
     6481 caactcacct agccttaatg gagttaaaag acaaacaggc tttagaaatt ctaagaaaat
     6541 cttataatgc ttttcaaaat ttgtcttttg attatataga ttttagaaga gaacttgata
     6601 tgacaaacga taaagatttg tttatagaag agtttaggga aggactttta cccttatatg
     6661 aaggtaaaat gatacatcaa tttaatgcaa attttagcca aactacttat tttttagaaa
     6721 aggctaaatt ggatgagcat ttaaaaagta aagaacttta tagagctaaa aaagctactg
     6781 ggaaagaatt aaatcctaaa ttgataaaat acgatagaga attttttaga cttggatata
     6841 gaaaaattgc aagtgataca aatgagagaa ctttgatagc ttctttattg ccaaaaaatt
     6901 gcggtggagc tgatagtact tatagtaaca ttccaaaaca atatgtttta aaagatgatg
     6961 taatttgcat ggatatagtg ccttatgaaa gaattttatt tgttttagct ttgtttaatt
     7021 ctttagtggt tgattttatc ataagaaata tggtacaaat caatgtaagc aaatcttatt
     7081 tagaaagaat tcccctgcct caaccaagtg atgaagaaat tcaaaacaat gaaatttata
     7141 aaaccctcgc taaaaatgct ttgcttttac agctttacaa tgatcaaaat cgtcattttg
     7201 atgagctaaa acaagaattt aatataaaaa atgaagaaat tccaaaaact aaaaaggctt
     7261 ataatatctt aagagcaaaa aatgatttat tggttaaaga actttatggt ttaagtgatg
     7321 atgaattttc ttacatgata agcactttta aagttttaaa tgaaaagcaa agtgaatata
     7381 taaccttgct aaaaactata taaatgaaag atttatatag tttttaaaat ttaattttta
     7441 ccgataagtt cttctgtaat tctagcgatt tctaattctt catctgtagg aataacaagc
     7501 actttaactt tagaatttgc atgatttatc attctttcgc ccgaaatcct ttgtttgtta
     7561 agttcaaaat ctaactcgat accaagatga actaatctct cgcatacttt ttgtcgaacc
     7621 aaactatcat tttctcctat accacctgta aaaataatag catcggtttt tggcaacaca
     7681 gcaaagtagg atcctatata tttaacaaga cgataacaaa acatatcaag agccaagcgt
     7741 gctttatcat taccttgttc tatctctctt tctatatctc taaaatcatt ataaccgcaa
     7801 attccatata ctccactttt tttattcatc agtgtatcta tttcttctat agttaaaccc
     7861 ttaagatgac taacaaaagg taaaatagca gggtctaaat ctccacaacg cgttcccata
     7921 ataagtcctt caagtggagt aaagcccata gaagtatcca tactcttacc tttttctata
     7981 gcacatacac ttgcgccatt tccaagatga gcagagatga catttaattc attttgatct
     8041 ttttgaagaa attttgccgc tctagaacta acataagcat gagaagtccc atgaaaacca
     8101 tatcttctaa tattatgctt atcataaaaa tcataaggca aagcatacat ataagcaaaa
     8161 tcaggcatag tgcgatgaaa agctgtatca aaaatagcca cattagcaac actaggtgca
     8221 gctttgatca ttgtttttat acctgctaaa tgcgcaggat tatgcaaagg agcaaaaata
     8281 ctaaccctat ctatctcttt aagaacataa tcatccacta aacaatgctc gcttaaattt
     8341 cttcccccat gaactatacg atgaccgcag ccatcaagtg catttaaatc tgctaaaatt
     8401 cctgattctt taaaaagctc attaactata ctaaggcctt cttcgtgatt atttattgtt
     8461 aattctcttt caaaactttc attatttaaa gtatttttta atacaacctt tgaattttgc
     8521 tctccaattt tttctaccaa tccactggct ttaacgattt tattatcaaa aaatttaaat
     8581 ttaatcgatg aagaacctga atttaaaact aaaattttca tttatcattc ctttctattg
     8641 agcttgtatt gcacttaaaa ttacagtatc tacaatatca tctaccaaac atccacgact
     8701 taaatcatta acaggttttt taagaccttg caaaatagga ccgattgcta aagcattagc
     8761 agttctttga actgctttgt aacaaatatt tgctgcgtta agatcaggaa aaatatacac
     8821 atttgcatga cctgctatct tagaatttgg cattttcttt gctgcagttt ttggatcata
     8881 agcgcagtca aactgcatag gaccatctat atttaactca ggatattttt ctttagcaat
     8941 ctttaatgct tcttttacaa gatctacgct ttctccctta ccgctatcac cactagaata
     9001 agaaagcaaa gctattcttg gttcaagtcc aaaagattta gcagtcatag cacttacata
     9061 ggcgctagtt gcaagttgct cagcacttgg gcttggattt acagcacaat cagcaaaagc
     9121 taaaacttga tcttcaagtc ccataaagaa aattcctgaa acggaactaa tgccttcttt
     9181 agttttaata agctgtaatg cagggcgaat cgtttcagcc gtagtagttg atgctccact
     9241 aaccatagca tcagcttttc cagtatgtat aagcaaagtt ccaaaataag ttttatcctg
     9301 aactagtatc ttagcctctt ctaaactcat gcctttagat tttcttgttt cataaagaat
     9361 agaagtaaat tcttgattat attctgaatt aagtggattc ataatttgca tagcacttaa
     9421 atcaagactt aatctagtag catcttgttt gattttttct tcatcgccca ataaaataag
     9481 atcaacaact ttacttttta ataaaatttc agcggctttt aaaattctct catcattact
     9541 ttctggtaaa acaacagttt ttttattttt tacgctttgt ttaatcaatt catatttaaa
     9601 acgatgcgga gttataaaat catactcttc aagcttttgt acttcttcaa aattaaaatt
     9661 ttcattaatc aaaacataat tacgaccatc tagggcatga tcgaaatatt tttgagctat
     9721 aagtttatct tcatcgttaa taatagcagc gataggggta ttaagatttt tagctaattt
     9781 tatactaaga tcaaatccat caagtattcc aaattcgcaa aaactattta caagcacaaa
     9841 atcgtatttg cgttttaact cttcgtattc ttctaaaata acattaaaaa aattatgagg
     9901 atctttgcta aattcctcca ttgcttctct aaaggtaaaa ccataggcgc tttttacagt
     9961 ttgattgata ttaaattctt ccaaccaacc ttgtaaaaca gggacgcgat gtatgtatat
    10021 tacagggcaa taaattgcga tatttttgta aattttgcta taatttttaa gcaaatttgt
    10081 actaataata gtatttaact catcacttct agatctcatc aaataaagat ttgccatcat
    10141 tttctccttg aatttataaa tgtggaacac tctttgcttt ttctaatttt aacaaagaaa
    10201 aataaaaatt catattttaa aggacgaaaa tgaaaaaagt tttattttat gtgttaccgt
    10261 ttgcattttt tggttgttct gcaacggttg atccgcaaat ttcaatgaaa ccacctgctt
    10321 atgtagaaga acttgcacca aaacaaagta ataatataga aagtgcgcca ggatcgcttt
    10381 ttggcaaagg agataatcct ttattttcag ataaaaaagc tatgaatgta aatgatttag
    10441 ttacagttgt tatacaagaa agtaccactc aaagcacaca agctaataaa gcaacaagca
    10501 gaactaatac ctcaaattta ggtggaggtg ctttaacagg aagttcagga gtggtagcta
    10561 atgctcttaa taaagtcaat gcttattcta atataggctt tcaaaccaat agttcaaaca
    10621 actacacagg aacaggctca caaagtagaa atgaaagttt caatactaca atttcaacac
    10681 gtgtaattaa aattttatca aatggtaatt attttatcga aggttcaaga gagcttttaa
    10741 tcaacggaga gaagcaaatc atacaattaa gcggtgttat tcgtccttat gacatcggtc
    10801 aagacaatac tatagatagt aaatatatag cagatgctaa aattctatat aaaacagaag
    10861 gagaagtgga tagaagcaca agaaaacctt ggggtagtaa agttatagaa gcgatatggc
    10921 cattctaaaa gcaaggttaa accttgcttt taggctttta ttcttttaca gccctacttt
    10981 taacctcatc ttcaacttca gctaaaaatc tatctacaag ttcactttct tttaatttag
    11041 ctacaacttc accatgtctt atgacaagtc cttgattttt cccaaaggct atagccacat
    11101 cagcgccctt agcttcgcct aaagcattta ccacacaacc catgacactg atgtttaaag
    11161 gttcttttat atgcttggtt ttttcctcta cgattttaat cgcacttaac aaatcacttt
    11221 gaatcctacc gcaagttgga catgaaataa tatttactcc gcttttttgt actccgctat
    11281 cttgcaaaat tgctcttgct acacgaattt cttcttcaag ctcacccgtc atagaaacac
    11341 gcatagtatc gcctatacct ttaagaagta aatttcctaa agctatagaa ctttttacag
    11401 tgctatgaaa tttagttcct gcttcagtta cccctaagtg aaaaggataa tcacaaagcg
    11461 gtcttaatct ctcataagct tctatagttt tttgagcatc tgaagtcttc atggaaattt
    11521 taatatcaaa aaagtctaaa tcctctaaaa gcttgatatt atacatcgca ctttctagca
    11581 tggcatcgac accataacca aatttatcac taaattgttt ttctatggag ccgtgattta
    11641 caccgatgcg tatagggata ccccgttctt tacatgcttt taccacttct ttaatatttt
    11701 ctttagagcc tatattgcca ggatttatac gcacgccatc gataaattca gcacaatata
    11761 cagccaaatt atgattaaaa tgaatatcta cgattaaagg tagaggactt ttagctttaa
    11821 tctcttttaa agcccttgca tcagccatat ccaagcacgc caaacgcact atgtttgctc
    11881 ctgcaaaata aagacgattg atttgttcta aagaaccttc tatatctctt gttttagtaa
    11941 aaagcataga ttgaactgaa atgggtgcat caccgcctat taaaacattt cctactttga
    12001 tttgtctggt tttaaatctt ttatactcca taacttcact ctttgaaaaa ttt
//
LOCUS       DARGEM010000046        11941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.046, whole genome shotgun sequence.
ACCESSION   DARGEM010000046 DARGEM010000000
VERSION     DARGEM010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.046"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            58..1293
                     /locus_tag="SFZ78_000936"
     CDS             58..1293
                     /locus_tag="SFZ78_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG8211818.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(1353..2264)
                     /locus_tag="SFZ78_000937"
     CDS             complement(1353..2264)
                     /locus_tag="SFZ78_000937"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG8211819.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDILANLDNKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(2261..3127)
                     /locus_tag="SFZ78_000938"
     CDS             complement(2261..3127)
                     /locus_tag="SFZ78_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8211820.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            complement(3132..4205)
                     /locus_tag="SFZ78_000939"
     CDS             complement(3132..4205)
                     /locus_tag="SFZ78_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG8211821.1"
                     /translation="MNFINLQAQYLAYKDEINAKIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEISKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            4320..6848
                     /gene="alaS"
                     /locus_tag="SFZ78_000940"
     CDS             4320..6848
                     /gene="alaS"
                     /locus_tag="SFZ78_000940"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG8211822.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFITKREVL
                     DTQKFFNLNLSFIKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGVKKIKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDAPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKIDEALKQSLETIEKAL"
     gene            6848..7399
                     /gene="maf"
                     /locus_tag="SFZ78_000941"
     CDS             6848..7399
                     /gene="maf"
                     /locus_tag="SFZ78_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG8211823.1"
                     /translation="MLILASNSISRANLLKTAKIDFKQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKTKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            7396..9327
                     /locus_tag="SFZ78_000942"
     CDS             7396..9327
                     /locus_tag="SFZ78_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG8211824.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYAAYLFTSVDTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPEKTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(9355..11928)
                     /locus_tag="SFZ78_000943"
     CDS             complement(9355..11928)
                     /locus_tag="SFZ78_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8211825.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
BASE COUNT         3872 a         1803 c         2068 g         4198 t
ORIGIN      
        1 taaaccattt taaatataat tatctcgcaa ttaaattttg taagaaagga caggtaaatg
       61 aatgcgataa attcaagttt tattgtgttg tgtactttgc tagttttgct tatgactcca
      121 gctttggcaa tgttttattc aggtatggta agaagtaaaa atactctcaa taccataatg
      181 aattgcttta ttgtttttgg tgttattact ttacaatggg tagtgcttgg atttagtctt
      241 tcttttggta aagatgaagg acttgggctt gtaggaaatt tcgagaattt cctcttagag
      301 ggtattagcg gatacaacgc ttcaggcgtt ccaaatattc tttttgtgat ttttcaaatg
      361 atgtttgcac ttattgcatc tgctattata acaggctctt tggtgggaag aatcaaactg
      421 ggtgttttgg tgatatttct acttttttgg agtactttag tttatgatgt gttagcgcat
      481 atgatttgga gcagtgaggg atttttgctt aaaagaggaa gtcttgattt tgctgggggc
      541 ggtgttgtgc atatcagctc tggggttgcc ggacttgtag gagctttgat ggtaggcgct
      601 agaaaaagtg atgatgagga taaaaacgcg cattctattc cttatgcttt cttgggtgcg
      661 attttgcttt ttataggatg gttaggtttt aatgctggaa gtgctggcga aatgaatgat
      721 attgctatca atgcttttat agtaagtatt atatcagcag cttgtggctt tttatcttgg
      781 gtggtacttg agtggctcat ccataaaaaa ccgactattt taggtggact tagtgggctt
      841 gtagcagggc ttgtgggaat tactccagct tgcggttatg tagatattta tgcttctctt
      901 gttataggga ctttgtcttc tgtgttttgt tattttggtt taagttttat caaatacaaa
      961 ctcaaatggg atgattcttt agatgccttt tctttacatg gaatcggagg tatttgggga
     1021 ggaattgcca cagggctttt tgcaagtgct aaagtaaatc ctaatgtgat tgcccaaaat
     1081 gcacttggcg agggattttt tatcagcgga agtttggaac ttttaaaaga gcaaattttt
     1141 gctattgtga tttgtgtggt tttgtcagct cttataagct ttgttatttt taagattatc
     1201 tcttgtttta cagacttaag agtaaaagaa gaagtagagc aaaaaggctt agatgtgagt
     1261 ttgcacggag aaaaagctta tactttagct tagttggcta aatttttact aaaaagtcct
     1321 tgtaatcata aacaaggact tcaaaatcat tcttaattaa aatcagataa atactttaaa
     1381 ataaagtgga taaattcatc actatcattt gggcaagtga ttaaatcata atcgcacttt
     1441 gctaaatgtt tatactccat acctagctca aaaatcgttt cagaacaatc tatgcaaaaa
     1501 gaaataggat aaatcaaagc tttattatct aaatttgcca aaatatcgct cgtatttggc
     1561 tcaagccatt ttacagggcc tagtttagac tgataagcta aaataaattc atcaaaatga
     1621 tcttttagct tttcttttaa aatttctaca tgatcattta catgcttttc atataaatca
     1681 cctttatcaa taatgctttg tggtaaagaa tgcgctgaaa aaatcaaaat tttggcatca
     1741 aatttacttt ttttagccaa aatgtgcgaa actatcatct cgttataaag ctcatttttg
     1801 taaaaaatat ctatagtttt tacttttgct tgaatttttt gctttgaaat ttcattttgc
     1861 agaacttcta aagatgaagt tactgtggtg caagaatggt gcggataaag tggaaaaaga
     1921 atgatttcat cacttgcatt taaagtgtat ttttgcaaaa tttctgtggc aaaaggagga
     1981 acataaagat ttacaaaatc aaatttaaat tcatcttgtt ttaaattaag cttgtcacac
     2041 aggctttgag taagttcgtt taaaggggat tttccgccca tttttttata gttttcttgc
     2101 atggctttaa cgcgagcctt tgttatgatc catgctacaa attttcttaa aaatcgattt
     2161 ttgattccta aaatataagg atcattaaac atatttttta aaaaaacttc acaatcttgt
     2221 aaattcgtag ctccgcccat atttaaaaat aaaactaatt tcacgcaaac ctttctaaaa
     2281 tttcttgaac tttgtaagca tcgctcgtgc tggctaaatg attgggttga ttatcgataa
     2341 gttttaacaa agcttcgtgt tctgaaaaaa gtggactttg ttgagtaagt tctataaaat
     2401 ttccatcttt taataaagaa aagtcattta aattggcttc ataaaaatga tttttagtaa
     2461 taagatgaat ttttcttagt ttttgtgtgc tattccaact ttgatgtatg ctagcaatac
     2521 atttttcaag ctcacataga ataatgcttt cactttctct tgtttgatct tgggtgtatt
     2581 ttttaagcaa attggttttt gttatttctt gtttgcttaa aaaacaaagc aaatcaagat
     2641 catgcacagc caaatcttgc aaaatcccta catcgctgat tctttgtggg tagggtgaaa
     2701 atctttgtat gttaatgctg ataatttctt cattttcaag ctcttttttt agggctaaaa
     2761 ccgcaggatt aaatctttcg caaaaaccta cacctacttt tatgctgtat tctttagcta
     2821 aatttgaaat ttcgtctatt tcttttaaat ttagagctaa aggcttttcg attaaaacgc
     2881 atttgcattg tttaaaaact ttttttgcta ttgttaaatg tgaatttgta ggtgttgcta
     2941 tgatgataat atcattattt tgatttaaaa atttatccag atcatcataa aaaatatcat
     3001 caaaaatatt taggtttgga tttttgcaaa gatcaaaaag tgcattaagt ttaaaatgag
     3061 aatttttact aagttcattt aagtggtttt gccccatttt tccaaggcct atgataccta
     3121 ttttcatgga atcaatcttt aaaaatacaa ataacttgct cttgctcttc ttcacttaaa
     3181 aaaggtgaaa aaggcaaaga taagatgtgt tcgcttgcgt attctgaatt tttaagttct
     3241 aaatttgaaa actcactaaa gcaaggttgt ttatgcaaag gggttggata gtgtatagca
     3301 taaggtatat tagctttttc aaatttttgc aatacactag ctctatcttc aactaaaacg
     3361 ctgtattgtg cataagcgct aaaagcattt ggatcaattt gcggaatttg gcagtttttt
     3421 aaatttgcat tataaatttg tgctaatttt tgtcttttgt ctaattcttt ttctaggtat
     3481 tttaacttaa catttaaaat cgccgcttgc aaggtatcaa ggcgtccgtt tatacctata
     3541 aattcatgtt tataacgctg tgtttgtccg tgattgagta aaattcttat ttttttagaa
     3601 atttcatcat catggcaaaa aatagcccca ccatcgccat aagctcccaa aggcttcgaa
     3661 ggaaaaaagc ttgtgcatga aattttagct atagagcagg atttttctcc tttgaaactt
     3721 gcaccaaaac tttgtgcacc atcttcgatc aaagtgatat ttttatcttt taaaatttct
     3781 tctaaagccc ttaaatcact catttgtcca aacatactca ctgctataac agctttagtt
     3841 tttggggtta ttgctttttg tactgcttca aaatcaagat tgtaatttga taaatttata
     3901 tctacaaaaa caggttttgc gcctactaag gccacaactt cagctgttgc tatgaaagtg
     3961 aaactaggca ctataacttc atcatctttg ccaatatcta aggctcttaa ggcaagatat
     4021 aaagcactgg ttccacttga acaacctata gcgtgtttaa cacctaaaaa atgagctaaa
     4081 ttttgctcaa attcgttaag ctttgtaccg cctataaaag aagagcttga taaaacgctt
     4141 tcaattttag cattgatttc atctttgtat gcgagatatt gggcttgaag attgataaaa
     4201 ttcataaaaa accttagaga aataaaatta aataaaaatg tttattgtat tttagtttta
     4261 cttaatttaa agtaattttg gtatgatatg tttttataaa aatttcttta ggaaaattca
     4321 tggatattag aaaagcttat ttggattttt ttgcatcaaa aggacatgag ataaccccgt
     4381 caagtccttt agttcctgat gatgcaactt tactttttac taatgcgggt atggtgcctt
     4441 ttaaaagtat atttacagga gaaattccac gcccaaaccc tccacgcaaa acaagctgtc
     4501 aaacttgtat aagagcgggt ggaaagcaca atgacttaga taatgtagga tataccgcac
     4561 gccatcatac tttttttgaa atgcttggga attttagctt tggggattat tttaaagaac
     4621 aagccatagc ttatgcttgg gaatttgtaa ctgaagtttt aaaactacct aaagatagac
     4681 tttatgtaac cgtgcatgaa aacgatgatg aagcttttaa tctatggcaa aaacacattc
     4741 aaaaagaaag aatttacaaa tttggcgata aagataactt ctggcaaatg ggcgatactg
     4801 gtccttgtgg tccttgtagt gagatttttt atgaccaagg acaagagcat tttaactcaa
     4861 gcgaagatta tatgggcgga gatggagata gatttttaga aatctggaat cttgttttca
     4921 tgcaatacga aagaagtgct gatggagtgc ttagcccact gccaaagcca agcattgata
     4981 caggaatggg gcttgaaaga gtaactgcaa ttaaagaagg taaatttagc aattttgata
     5041 gctcgctttt tatgccaatc atcaatgaaa tttcaaaact ttgtaataaa acttatgttt
     5101 atgaaagcgg agcaagtttt agagtcatag ctgatcatat aagatcaagt gtatttttgc
     5161 ttgcacaagg ggtaagtttt gataaagaag gtagaggtta tgttttgcgt cgtattttgc
     5221 gtcgtgcttt aagacatgga tatttgctag gttttaaaca agcttttatg tataaactag
     5281 ttgatattgt gtgcgattta atgggcggac attataccta tcttaatgag aaaaaagact
     5341 ttataaaaga acaaattcgc cttgaagaag aaagattttt aagcactata gaaaatggga
     5401 ttgaaatttt taatgaagag cttaaaaaca ctaaagaaat ttttagcgga gaagtagcct
     5461 ttaagcttta tgatacttat ggttttccgc ttgatttaac ggctgatatg ctaagagaaa
     5521 aaaatcttaa agttgatgaa gaaaaatttg aacttttcat gaatgagcaa aaagcacgcg
     5581 ctaaggcttc ttggaaagga agtggagata aaactgcaag cggagatttt aaaaacttac
     5641 ttgaaaaatt tggagaaaat catttcgtag gttatgaaaa agcagaatgc gaaagtaaaa
     5701 ttttagccct tttagatgaa gattttaaag aagtttccac ccttaaagat gcgggttggg
     5761 tgatgcttga aaacacacct ttttatgcaa caagtggggg acaaagtgct gatagtgggt
     5821 ttataactaa gcgtgaagtt ttagatacgc aaaagttttt taatctcaat cttagcttta
     5881 taaaagcagg cgaagaacta aaagttggcg atatagttca tgcaagaatc gatacagaaa
     5941 aaagagagca aatcgcacgc caccactcag ccactcatct tttacaccat gctttaagag
     6001 aaattttagg ttctcatgta agccaagcag gatctttggt tgaaagcaat aagctaagat
     6061 ttgattttac tcatcataaa gctttaagca aagaagagct agaaagcatt gaaaaaagag
     6121 tcaatgaaat gattataaac tcaagcgaag ctatcttaga aaatatgcct ttagaagaag
     6181 ctaaaaaaag cggtgctata gcattgttta atgaaaaata ccaaggcaat gtgcgtgttt
     6241 taactttagg tgaaagcaaa gaactttgcg ggggaactca tgttaaaaat actgctcaaa
     6301 taggaagttt ttacatagtt aaagaaagtg gtgtgagtgc tggggtgaga cgcattgaag
     6361 ctgtagtttc taaagcggct ttagaatttg taaaaaatca actcgaagaa ctttctaaag
     6421 taaaagatga acttaaaaat aatgatattt taagcggggt taaaaaaatt aaaaatgaaa
     6481 ttttaagttt aaaaaatgag cttaaaaact caagtaaaac agagcttgat tctaaaaata
     6541 tccaaggtgt tgaaatttgc gtaaagcgta tagataatgg cgatattaaa gctatgattg
     6601 atgattttaa aaacaaattt gctaaagcgg tgattttact tatccaagtg aaagatgaaa
     6661 aaatcacttt agcagctggt gttaaagatg cacctttaaa agcaggagct ttggttaaag
     6721 aagcggcgca aattttaggc ggaaatggcg gtggaagaga tgattttgct actgcaggtg
     6781 gaaaagattt aagcaaaatt gatgaagctt taaaacaaag cttagaaacg atagaaaaag
     6841 cactttaatg ttaattcttg cttcaaattc catttcaagg gctaacttgc ttaaaaccgc
     6901 aaagattgat tttaagcaag ttagttttga ttatgatgaa aatttaaata aaaatatttc
     6961 acctttttta tatgttcaaa aaatagttct tgaaaaagaa agacaatttt taagtacttt
     7021 aggcaaagat tttcaaaacc aaaatttgct ttttgcagat agtatagttt gtatagatga
     7081 aaaaattctt accaaaacaa aggataaaaa agaagcttat gaaatgcttg ccttgcaaaa
     7141 tggaaagtat gcaagtattt tatcggcttt tttgcttgta aaacctgaaa aaagagtttt
     7201 ttctctttca aaaactacgc tttattttaa aaattttgat gaaaatgctt taagagatta
     7261 tgtagaaaat gatctttata aaggcaaggc gggttgtatt atgtgtgagg gttttcatca
     7321 aaatttcatc acccaacaag taggaaatct aagcactgct ttagggcttg atatccaaac
     7381 tttaaaggct tatttatgaa aatattaaaa tatatttttt cattttttac tcttttgttt
     7441 atagctggat ttatttatgc ggcttatctt ttcacaagtg ttgatactga gggttatact
     7501 tttaaagaat acaaacctcc tcttacaaca caaatttatg atagaaatgg taagcttgtg
     7561 gctaatattt ttgaacaaca tcgtttttat gctccttatg aagagcttcc tccacgcctt
     7621 atagaagctt tggttgctat agaagataca agcttttttg aacataatgg agttaatatc
     7681 gacgccattt ttagagctgc cgtaaaaatc ataaaaagcg gtggaaaaac catggaagga
     7741 gcttccactc ttactcagca atttattaaa aacacggaat taactccaga aaaaactatt
     7801 acgcgtaaaa ttcgagaagc tttgcttgct tataaaatgg aaaccatttt aaccaaggaa
     7861 caaattttag aaaggtattt aaattttatc ttttttggac atgggtatta tggagtaaaa
     7921 accgcagctt tggggtattt tcataaaaat ttaaatgaac taagccttaa agagattgct
     7981 atgctagtag gtatgccaaa agcacctagc agttatgatc ctacaaagca tttagatctt
     8041 tccatctcaa gggcaaataa tgttatttca agaatgtata atctaggttg gatttcaaaa
     8101 gcagattatg atacagccat taaagaaatt ccgcaagttt atgatgatac gcttactcaa
     8161 aatgctgctc cttatgttgt agatgaagtg attaaacaat taagccctaa tatcaaagac
     8221 ttaaaaacag gtggatataa aatcatttta aatatagact tagatgttca aaatatggcg
     8281 caaaatgctt taaaatttgg ttatgatgag atagtaaaac gcgataaaga tgcaaattta
     8341 agcactttaa acggagctat ggtcgtggta aatcatcaaa gtggtgatgt tttagctttg
     8401 gtaggcgggg ttgattatga aaaaagtaat tataaccgtg ctactcaaag tatgcgtcaa
     8461 cctggaagct cttttaaacc ttttgtgtat caagtggcga ttaatttagg atattcgcct
     8521 atgagtgaaa ttgctgatat ttctagaatt tttgaaggtg gagcgggtaa taatgaggat
     8581 tggaaaccta aaaatgaagg gggtaaattt ttaggtttaa ttaccttaaa agaagcttta
     8641 acaagatcaa gaaatttagc taccattaat ctcgcacttg atatggggct ggatgttctt
     8701 tactctaagc taatggaatt tggatttaaa gatataccgc ctaatttatc aatcgtattg
     8761 ggaagttttg gtatttctcc tttggagtat tcgaaatttt ataccatgtt tgggaactat
     8821 ggtacgatta aagatcctca aattatcaga caagttcagg ataaaaccgg taaaaccatc
     8881 atggaattta actcaaatga gcgtaaagtc agcgatgaag cgcaaagttt tctggtttta
     8941 gatatgatga gaaatgttgt tgaaaaaggc acagggcgta atgcaagagt aaaagatata
     9001 gaaatagcag gaaaaacagg aacaacgaat aaaagtgttg atgcttggtt ttgtggactt
     9061 acgcctgaaa tagaagcaat catttggtat ggaaatgata acaacaagcc tatgcgttat
     9121 acagaaggtg gggctagaac agctgctcct gtgtttagag aatttttaac tcaatatata
     9181 gaaaaattcc ctgatacaac tagaaaattt agcattccta atggagttta tcgtggaaat
     9241 tataaaggag aaagtgctta ttataccacc aaatcaccat taccaaaagc aaatatgaaa
     9301 tttaatgaaa gcgagattat attttgaaag tagaaagatc tactttcaaa atgattaagc
     9361 ttttttgatg attatttcat catcttttgc atcaatgata atgctatcat tttcatgaag
     9421 ttcatcagca agtatcatat cgcttaattt atcttctata agatcataaa tagctcttct
     9481 taaaggtcta gcaccaaaat cagggtcaaa accatcttta gcgattaaaa gggctgcatt
     9541 ttcgcttaaa cttgctttta ttcccttgtt ttctaagctc atttgtaaat ctttaaataa
     9601 aagcttgact atttcataag cttcatcttt tccaagtgga ttaaaggtga taatatcatc
     9661 taaacggttt aaaaactcag gtttaaagaa attttttaac tcatttttta ccgcatcttc
     9721 ttgttctttt ccacttaaat tcataatggc acttgaggcg atattagaag ttagaatgat
     9781 aatggtattt ttaaaatcca ctgttacacc tttgctatcg gttgctctac catcatctaa
     9841 aatccctaaa agcacattaa atacatcttt atgtgctttt tcaacttcat caaacaaaag
     9901 tacgctataa ggttttcttc gtacggcttc agtaagctct ccaccttctt catgtcctat
     9961 atatcctgga ggcgcaccta agagtcttga aacactatgt ttttccataa attcactcat
    10021 atcaaagcga atcattgctt tttcatcatc aaataaaaat tttgccaaag ctttagccga
    10081 ttgtgttttt cctacccctg ttggccctaa aaataaaaag cttcctatag gtttattgtc
    10141 cgcattaagc cctgctttgt tacgtttaat ggctctagct aaagcactta aggccttatc
    10201 ttgtcctatg acactttctt ttaaatgttt ttccacttct aagaattttt gtttttcaga
    10261 agttaacatt ttttgcacgc taatacccgt ccatttgctt aaaattccag caaccaaatc
    10321 ctcatccact tgatttttaa gtaaaactcc attttcactc atttttttcc atttatcttc
    10381 taagatttct acttcttttt caagacttgg aatttttcca tactctagct cggctgcttt
    10441 ttgaaattca cctctagctt tagccaaaga agcttcattt ttaagcagat caatttcttt
    10501 tttcttagca cttatgccat caaaaacact tttttcattt tcaaactgtg aatttagggc
    10561 attttgtttt tcttttaaat tagctagttc ttttgcgatt tcatcgagtc ttttttgatt
    10621 tttttcatca ttttccattt ttaaagcttc attttcaact tctaaagttt ctatatcttt
    10681 gcgtactttt cttaaagaac ttggttcgct ttcaatttgc atttttagtt cagctgcagc
    10741 ttcatcgatt aaatcaatgg ccttatcagg taaaaaacga tctgttatat aacgctttga
    10801 aagtttagct gcggctacta aagcactatc atttatggtt acattatgat gaatttcaag
    10861 cttttctttt atacccctta acatagccaa agcctcatta acacttggct cacctacatt
    10921 tacaggttga aaacggcgtt gcaaggctgc atctttttca aaatatttac gatattcttt
    10981 taaagtagtt gcacctatgg tatggagttc acctcttgca agagcaggtt ttaaaatatt
    11041 tgccgcatcc atgctgcctt cactcgctcc agctcctact atagtgtgaa tttcatcgat
    11101 aaaaagaatg atattttcac tttttatcac ttcattaacc acagctttta atctatcttc
    11161 aaattctcct ctgtattttg cacctgcaat taaagcactc atatcaagag cgatgacttt
    11221 tttattttgc aaagattttg gaacatcttt tttaataatt ctttgtgcta aagcttctac
    11281 tatagctgtt tttcctacgc ctggttcacc taaaagtata gggttgtttt tggttttgcg
    11341 tattaaaatt tgcattaaac gttcgatttc ttcttctctg cctataacag gatcaagttt
    11401 accctcgctt gcctttaagg ttaaatctat accaaattta tttaagctat ctaaagtttc
    11461 atcgcttgtt ttgctatcca tttttcgtcc cgctcttaga ctttcaagct ctttttgaaa
    11521 ttctcttaaa tctaaaaatt gcgccaaaat ttctttaata ggactttttt gactttcact
    11581 tataagccaa gtatccacac ttaaataact atctccatta gcactcatta atcctttagc
    11641 attttctaat gaatttataa gttcattgga aaagcgtata ttttcacggt ttacatttga
    11701 actcgttgca agttttgaaa ttctgctttt aatttcaagc tctaaggctt ctttagaaat
    11761 atttaattta tttaaaattt gatttaaaat acttgcatta tctacgctta aagcccataa
    11821 aagatgtaaa ggtacaactt cattattttt agaatgtata gctaaagatg ctgcactttc
    11881 aaggtttgaa agcatattat cagttaaaaa atcttgtata tttgccatgt tttatccttt
    11941 a
//
LOCUS       DARGEM010000047        11940 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.047, whole genome shotgun sequence.
ACCESSION   DARGEM010000047 DARGEM010000000
VERSION     DARGEM010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11940
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.047"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            654..830
                     /locus_tag="SFZ78_000944"
     CDS             654..830
                     /locus_tag="SFZ78_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-structuring protein H-NS"
                     /protein_id="HEG8211826.1"
                     /translation="MKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSA
                     SPDSIFGISLWKKF"
     gene            815..1414
                     /locus_tag="SFZ78_000945"
     CDS             815..1414
                     /locus_tag="SFZ78_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG8211827.1"
                     /translation="MEKILKILLFLPILTLSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(1463..2305)
                     /gene="fliY"
                     /locus_tag="SFZ78_000946"
     CDS             complement(1463..2305)
                     /gene="fliY"
                     /locus_tag="SFZ78_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG8211828.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(2302..3381)
                     /gene="fliM"
                     /locus_tag="SFZ78_000947"
     CDS             complement(2302..3381)
                     /gene="fliM"
                     /locus_tag="SFZ78_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG8211829.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(3381..4073)
                     /locus_tag="SFZ78_000948"
     CDS             complement(3381..4073)
                     /locus_tag="SFZ78_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG8211830.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(4054..4410)
                     /locus_tag="SFZ78_000949"
     CDS             complement(4054..4410)
                     /locus_tag="SFZ78_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211831.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(4429..5295)
                     /gene="flhG"
                     /locus_tag="SFZ78_000950"
     CDS             complement(4429..5295)
                     /gene="flhG"
                     /locus_tag="SFZ78_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG8211832.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(5288..6742)
                     /gene="flhF"
                     /locus_tag="SFZ78_000951"
     CDS             complement(5288..6742)
                     /gene="flhF"
                     /locus_tag="SFZ78_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8211833.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDKDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(6752..7225)
                     /gene="folK"
                     /locus_tag="SFZ78_000952"
     CDS             complement(6752..7225)
                     /gene="folK"
                     /locus_tag="SFZ78_000952"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG8211834.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(7228..7707)
                     /gene="aroQ"
                     /locus_tag="SFZ78_000953"
     CDS             complement(7228..7707)
                     /gene="aroQ"
                     /locus_tag="SFZ78_000953"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG8211835.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            7798..9027
                     /locus_tag="SFZ78_000954"
     CDS             7798..9027
                     /locus_tag="SFZ78_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8211836.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            9015..9911
                     /gene="sppA"
                     /locus_tag="SFZ78_000955"
     CDS             9015..9911
                     /gene="sppA"
                     /locus_tag="SFZ78_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG8211837.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELGNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            9990..11021
                     /locus_tag="SFZ78_000956"
     CDS             9990..11021
                     /locus_tag="SFZ78_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG8211838.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLYADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(11263..11613)
                     /locus_tag="SFZ78_000957"
     CDS             complement(11263..11613)
                     /locus_tag="SFZ78_000957"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211839.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFEIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(11589..11882)
                     /locus_tag="SFZ78_000958"
     CDS             complement(11589..11882)
                     /locus_tag="SFZ78_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HEG8211840.1"
                     /translation="MLLDKLIPTWNEYSIHDTMIDIQHQKLCELASKVESAVYKFVKR
                     EELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         3832 a         1846 c         1844 g         4418 t
ORIGIN      
        1 tggttttagt taattgtgtt tttgctagtg atgagctaaa tatagacagt ttatttaaaa
       61 agcaaatagg cttaagaagc attacaagct tttctttact tagcacagga aatgcaaact
      121 cgtattctct ttatcctaat ataacaatag gcggagatcc tacaatttgg aatgatacaa
      181 agcaggtgtt tttaactcaa actttcattt ataccctaac acctaagttt gacatactta
      241 tttcaggggg cggaagttat gcaagacaag aatatacaaa ttttttcaca aatgcatatt
      301 cccataaaga tcgcatagga tttgataatc tatggctagg ttttatttat acaggcgata
      361 gtattgcaga tttaattcca caaattacct ttcaaactgc agttgttcaa agagaaaaag
      421 caatcaatca aaccaaaaac ttttatctaa aatcacaaag cttacaagct agtttaaggg
      481 gatatagcga tcctgtagtt tatagtattt atacagggtt tggttataat caatcaagaa
      541 aatttaaaac ccttaaaata gagtatggaa atagtattta tgtgggtggg gatttatcta
      601 ttattctaag tcctaaaatt actttagatt taggagcaga gcaaagattt caaatgaaac
      661 aaaaaatcaa tggctatcaa aattctgaag tgcgttctat tccaacttta agtttaggtt
      721 ctacttatag cattaattca gataccgcag tttctgttaa tgctagtttt ggaggaagct
      781 ctgcttctcc tgatagcata tttgggataa gcttatggaa aaaattctaa aaattttatt
      841 atttttaccc attcttactt tgagtacaaa agccgaatgg gtagttaagt cttatcaaga
      901 aattaaaaac gaaagagtaa taagacaaac ttatgagcaa tcttgtggtg cttcatcttt
      961 agcaacttta cttaatatac ttgatgatca aaaaaagttt gatgaacttg aacttttaaa
     1021 gattatgagc ggacaagaac tttatacgga tatggtaagc tttgcagatt taagcgatgc
     1081 agttaaaaaa ctaggctatg aaagcaattc atatcaaatc aatagagaaa acttggataa
     1141 acttgtaaat attccaatgc ttgtaaaaat tgaagatgat ccacgctttc cacattttgt
     1201 tataattatc aatcataaag gtaattattt acaagtgctt gatccaagtc atggagaata
     1261 tataagttct aaaagtcaat tttttagtat ttgggataga tataataaag gtggttatgc
     1321 tttaattgtt gctcctaaaa aagagctaaa accttttaag ttaaatactc caaaatcttt
     1381 acattttgat ttcagccctt ttagtttgtt ttagttttaa ttcgtttata tttattattc
     1441 ttaatttgta ggctaaaact ttttatctta gttgttctaa tctttctttt ttagaaccaa
     1501 tttctgtaat ttgaacgccg aagttaccat cgacaattac tacctcgcca taagcaattc
     1561 ttttatcccc aattaaaatt tcaagcggat cgtttgcaag ttgattaagc tccacaactg
     1621 aacctatatc catagttaaa acatctttta aaagcatttt tttattgcct atacgcacac
     1681 gaacaggcaa acgcacatcc atgataagat tgatattttt aagctcttcg ctaagcatta
     1741 tcgctttttc ttcagtattg tgattagaat cagtgcttgt atttcctgtt tcagcaggtt
     1801 tcccgcttag gatgttatgg agtgtttgat ccatggctaa agaaacttgt tcttctaaat
     1861 cgcctatttt tacatcatat aaaaataatt ttttaaaatc tttaaaatct acgctttcag
     1921 gcacaaattc acaagattct atgctaaaat ccatttttgg aatgtctttt tgggctccta
     1981 aggttgtaga aaatgctgaa atgatatttt ggatggcttc tttagctgca tccatttcat
     2041 caggacctag tttatcgttt ttggtgatct cttcttcacc catcatccat tcaccaatag
     2101 cactcattaa aacagcacca gctaaaattc ctatttttcc accatttgct atattaaata
     2161 tagcatacac taaaggtgct tttaaagtat cgcttgtatt gacatcaaat tctttatatt
     2221 cgctaaattc agcacttttt cctgttaaac cttcaatggt gctgatgcat tcatttgtaa
     2281 acatttttaa aaaatcattg atcatatttc ttcatcctcc tcttcaggct catcataaac
     2341 actggcttta gctttacgct cttcttcgta tttttccaaa atttctttga tttcatcttt
     2401 atctgtgcgt ataagttcta aaattttaat agattttcta aaacgatgca atccaatttg
     2461 tgctaagaaa acatcttttt tatcgatact tactatagct ttatcgtctg cttctctatc
     2521 aagccttaaa atatcgcctt gtttaagttc taaaaattca tgaacattaa ttaaggtttt
     2581 tcctaaaatt gcctcatata ccacttcagc acgaccgatt aaagttttaa gctctttgtt
     2641 acgtgatttt ttggctgagg tttcacccat cataatatca cggtttgcta aacggcttaa
     2701 tatactttct aaatgtacta caggatagca gatatttacc attccgcttg aatttcctat
     2761 gatgatttcc attactacca tgataacaat ctcattttga gatacgattt gcacaacatt
     2821 tggacttgat tctttagctt ctatactagg ataaatttca gttacggtag cccagctttc
     2881 tttaagtctt tgcataatga tacgcaaaat agaatcaagt aaattaagct caatatccgt
     2941 aagctcacgc gaagcttcat agctatcgcc ttgaccacct aaaagcctgt ctatcatagg
     3001 aaaagctatg cttggattga tttctaaaac acagtttcca tctaaaggtt tgatagaaaa
     3061 aacattaaaa cttgttgggc ttggcaaaga cattaaaaac tctccataag tcatctgatc
     3121 gactgaatga agtttagttt caacaatact tctcatcatc gatgaaattt gagaggctaa
     3181 atttcttgct aatttatcat gtatgccttt aatcgtccta agttgttctt ttgaaactct
     3241 gttgggacgc ttaaaatcat atacaacgat atttctttca tctttttcat cttttgaatt
     3301 tgaggctatg ggtgtgtcgg tgttatcatc gacaacttca agtagagcat caatttcttc
     3361 ttgggagagt atctcagcca ttacactagc ctttctctaa gttttttaag aagttttttg
     3421 tgaatttgtg aaattctgct ttcactgatt tgtaaaattt cactgatttc ttttaggctt
     3481 aattcttcat aataataaag ctgaataatt aactgatcgc gctctttaag atcatctagc
     3541 acttcgtgaa ttttttctaa aagttcttct ttttcaattt tttctaaagt attgtcttca
     3601 ttataaagtt cgatttgctc atcaatgggc agggtatagc taatagcatg agctgttctt
     3661 acttctttga ttttttctac atctaaatca agttttttgg ctagatactc atcatcaggt
     3721 tcgcattcat gttctaaaaa atattcatcc atgattgcat caatatcttt aataatttta
     3781 cgattatttc gactcattac atcaagactt ctaagataat caagcataga gccattaact
     3841 ctttttcttg caaaacccca gaagttatca ttttgttctt tatcgtaacg gcgtgaaagc
     3901 tttatcattt cttcaacgcc tatgctaata agatcattaa catctatact tgaaggcaag
     3961 cgttctttta gtctaaaagc catagcacgc agagctggca tgtaagaaag cacaagctca
     4021 tcttgctctt tctttagcat ttgtgcataa gctttaggcg gctcttttag catttcttcg
     4081 tctttctttg aattcatttt tctttagctc ttctctttct tcattgagct tttctaaaat
     4141 tatatccatt ttcttttcac gaataactaa atcgttgata atattattgc tagttttttc
     4201 ataatcgtgt ttattaaaga ttctgccact aattttcttt acatctataa aattcataat
     4261 agcaatatga acaaaaacat aaaacataaa agtaataaaa caagtaaaaa tcagtatatc
     4321 aaaggcttca tctatactaa taatgctaaa tgcaagtcct ataaaaaatc cacaaacagt
     4381 gaaaaatgct acgtaatttt ctggcctcat aatctcttct ctttattgct aaaatctttc
     4441 aataattttt ctaaaaaaac ttgaaaaact acgatttgaa acattatcaa gcactttccg
     4501 ttccaatcta tataaaagct tggaagctag ggctttaatc tcatcacttg aggctgtgtt
     4561 ttcatcgcta aataaagttc tttttttaat actaccactt acatctttag aagcgcttaa
     4621 atgacctaag aattctaaat ttaaaggatt tttaatgttt gcatctgcaa cttttttaat
     4681 attttcaaaa acttttaaag cttcattttc attttttaca acattaaaga gcattagtaa
     4741 attttctttt gtcttagaag ttgtttttat ggttgcatac gcatcagtga ttgctgcagg
     4801 atcaggaaca gttactacta taacttcatc agccatttct aaaaaattta aaatatttcc
     4861 accaataccc gcgcctgtgt cgataataag aaaatcaagt tcatctaaaa tacttgcttg
     4921 atttaaaaat ctctcgtaaa tatttttatc attatatttt aaaatctcat ctccactttc
     4981 gcctgggatg agccataaat ttggcttaac ttctattaaa atgtcttcca aggagcattc
     5041 tccgcgtaaa acatgcaaga gatttttttg tatgcgtaca tttaaaatga catccaaatt
     5101 tgccaagcca atatcagcat caaaaagccc aactttatag ccattatttg ctaaaacatt
     5161 ggctagattc gcgctaatcg tactttttcc aacgccacct tttccacttg taatagctat
     5221 aaaatgagtg ttttgggatt ttttggttcc attttgactc atgagattgc gaagtttatt
     5281 tgcttggtta ttcattattt tttcctttgt taaacccttc taaaatacaa tgaactagaa
     5341 aatcactatt ggctacttct aaatcatctg gcacttcttg tcctatagag aaaaagctta
     5401 gaggaatatt tgtttcataa acaagagaga agatatttcc aaaaaccttt gtttcatcaa
     5461 atttagtaat aatcaaagta tcaatattta agaatgaaaa atttttataa atttccatta
     5521 aatcttcatg tttggtgttt gcagaaacca ctaaatttac atcaatttct gcatttgagt
     5581 gcattaaaaa ttctttagtt ttagcaagtt tgctttgatc gtattgtgaa tttcctatag
     5641 tatcaactaa aattacttcg caattattta agctttttat cgcttcatct aaatcctttg
     5701 gttctatgct atcaataata ggaagtttca tcatttttgc atactgaaaa agttgctcaa
     5761 ctgcaccgat tctataagta tcaagcgtaa taatacctgt tttataacgc ttatctccat
     5821 aagcatagcg aaaagctaac ttagctaagg ttgttgtttt tccgactcct gttgggccta
     5881 ctagcatcat gattttttgt ttttttatat cgctttcaac acgacaaggc aagatatttc
     5941 ttaaaagtga gtgaaaatat ctttgaaccg catctttgtt ggttttcata gcagctggca
     6001 tattttctat agttgctttc ataatcgctt ctagatgatt ttcaagcatt ccactttctt
     6061 tggcttgttt ataaatactt gcaaattcag gaggtatcat aagatttttt ctagcttcag
     6121 ctttatcgtc ccacatcata tctgcaagaa gatctatttt atcattaagc ttgttgattt
     6181 gtttttcaaa ttgcttttca aaattttcta tttttttatt ataatttgga ttaggggtgt
     6241 aattttctaa aggtgtgttt gtgactttag aaatttcatt gctaacttca cttagttttt
     6301 ctttgaaatc atcaaagcct agagtcttat tttgatgagg gttgattttg ttttgtggaa
     6361 aatcttgata ggttttttta gctaagtcat tgttttttac agtgtttaaa tttgtattta
     6421 agcgagtgtt tgagaaatcc aagactacat ctttatcttc ttgagggatt tgagatctaa
     6481 ttttttcttc tgcaagagag gtagaggatg gttttggcga gctttttttt gcaggtaaag
     6541 attttccttg tttttttaag tgttcttcat agtcgctttc ttctatggct accataacct
     6601 cataaagcgc actgcgattt aaggttttag gacgaatttg tttatttgtt ataattaaag
     6661 ctttatctcc gtaatcttct tttactttgg gtataatttg ttctgtatct tcaacggtaa
     6721 aagtatgtat aagttgtccc atttatattc cttatatcat gcctaaaggc aaaattacac
     6781 tcactctttc tttagcccct ttatgaggca cctcacacca cttatcacgc ttgacttttt
     6841 gtgaaaagta taaaagatct aaatcaagcg ttctaggagc gtttttgaaa gttctcttgc
     6901 gtttaaattt tacttcatag taaagtaaaa ctttcaaaag tgctcgtgca tgcaaattag
     6961 tttgtatcaa cataacagca ttggtaaaat ctttttgctc tttaaaacca aaggcttcat
     7021 ttatcaacat aggagatgtg gataaaattt taaatctttt atcatccatc attactcgaa
     7081 aaagcatatc aaatcttttt ttttcgggct ctatattgct tcctaagcct ataagagcta
     7141 aatatttaaa agatcgtata ttttgactaa aaaaaggaaa aaaacgactt ttttcaaagt
     7201 gttttactcc ttgaattttt agcattatta tttattcgtt tgttgtgctt gttgcattgc
     7261 gcgcaaattt tttatttgtt cgcaaatttg aattataccc attaaagcca agtgatagcc
     7321 aaaaggacca aaaccaacaa tagttccaga acatacaggc gctataagac ttttttgacg
     7381 aaattcttct ctgcgataaa cattgctaat atgtacttca attgtaggca aagctactgc
     7441 tgcaatagca tcgcgaatag ctactgaagt atgagtatag cctgctgcat tgataataat
     7501 tccatcaact gttccaaggc attcttgaat tttatctacg atttcacctt caaaattact
     7561 ttggaaaaag tcaagttcta cattattttg cgatgctgca agtttcattt gctcgtgaat
     7621 ttcttccatt ttcatagcac cataaattcc cacttctctt acgccaagca tattaacatt
     7681 tgggccttgg ataatcatta ttttcatgga tttaacctta aaaatttatt tttaaccttt
     7741 tattataaca ttttaaaaat aaatttttgc tacaatgtaa tttttgaaag gaaaatcgtg
     7801 tttatagttg ctgcaagata tcttttttta tgcgatgaag attttacaat actagaaaat
     7861 caagcctttg tttttgaaga taaaatttta gaattgggtg aattggataa tttaaaaaaa
     7921 aaatatccta aggctaaaat catcaaaaca cctaaaaatt cggttatttt acctgctttt
     7981 ataaatcctc acacacactt agaatttagt gcaaattcaa caactttaca ttttggagaa
     8041 tttttaattt ggcttaaaag tgttataaat tctcgttcca tattaaatgc acaggccaaa
     8101 gaagaattaa tacttcaaag cattaaaaaa atgcaaaaaa gtggtatagg cactataggt
     8161 gaaatttcaa gttttgggag tgatttagat ccttgcttaa aggctagtca caagggtatg
     8221 cgtatagtat tttttaatga aattttgggt acaaatgaaa atcaagttga agataaaaaa
     8281 caagaatttt taaaaagatt tgaaaattct ttgaaattta aaaatgattt ttttatcccg
     8341 gcaatttcga ttcattctcc ttattcaact catcctagtt tggctcattt tgctcttgat
     8401 ttagctaaaa agcaaaattt actagctagt acgcattttt tagaaagtaa ggctgaaaat
     8461 atctggctta gagagtctaa agggggtttt aaaaaatggc ttgaaaattt cacacttcat
     8521 cctaagcctc tttatacacc aaaggatttt gttaaacttt ttaaaggagt aaggactctt
     8581 tttacgcatt gtgtttatct aaaagaatat gaatggttag ataaaaattt acattctatt
     8641 acacattgtg cattttcaaa tcgcctttta agtcaaaaaa gcttagattt aaaaacggct
     8701 ttaaaaagtg gattaaatat ccatttagga accgatggac ttagctcaaa tatttcattg
     8761 tctttacttg atgaaatgcg cgcgaatttg cttatacata agaattttga tttattagag
     8821 ttagcctcta agcttttgca aatggtaaca ctttatcctg caagggcttt aaatttaaat
     8881 ttaggagagc ttaaaaaagg taaaattgct gattttaacg tatttgagct aggagaatgt
     8941 gataaaaagc aagctccttt gcagtttatt ttaaatgcta aggaagtgga taaattattt
     9001 ataaaaggaa aagaatgcaa attttaaaat cattttttaa ggctttagga tgcggtataa
     9061 aatttatcaa tacttatttt aaaacctttg ttttattgtt gattgttata tggattttaa
     9121 tacctagtgc aaattcaagc tctaatcttg caaatttaga acgcattgat ttaaagggtg
     9181 aaatttttga cagctctgcg gttttggaaa aaattatcaa tgctaaaaat gatagcaata
     9241 tcaaaggagt gctttttgtt atagactctc ctggtggagc ttttgctcct agcatggaac
     9301 tagctctagc tataaaggat ttaaaaatta aaaagcctgt gcttgtttat gcaagcggaa
     9361 ctatggcaag tggaagttat ttagcaggag ttggagcaaa taaaatttta gccaatccgg
     9421 caagttttat aggctctatc ggtgtgatta tgcaaggagc tgatttaagc ggattggcta
     9481 ataaactcgg tattaaagaa caaactattc aagcgggtga atttaaaagt gctggaactt
     9541 ttgcaagagc ttggaatgag aatgaaagaa attttttaca gggtttaatt gatcaaagtt
     9601 atgatctttt tacaggtttt gttgccaagg aaagagcatt agatcttaat aaaaaagatc
     9661 aatgggcaaa tgcaagagtg tttttagctg ccaaggctaa ggagcttggt cttatagatg
     9721 agcttggtaa ttatgaaaat gctaaaaagg agcttgaaaa acttgctaat gtttcaaatc
     9781 ctgtttggaa agaagaagat aagattgata aatttcttaa ccgcctagaa ggacaaacat
     9841 caagcttgat aagtaaaagc ttaatcgaaa tcgcttataa aactaatagc agttttataa
     9901 acgctagata aaatatataa atatttttat ttaatttttg taatattttt atgcaataat
     9961 tatttatatc ttagataagg agtaaaataa tgaaaaaaaa tattgttttt ttcgaagtta
    10021 aaggtgggag tgataaaggt gaagatggct atagaaaaga taccatgcct atggtaaatg
    10081 ccttaaaagc taagggttgg aatgctgagg tgattttttt tgaagtgggt aaaaaagatg
    10141 aaatttacaa atatgtgaaa gaaaattttg atggttatgt ttctcgcatc aatcctggca
    10201 atcttaaaga agaaaatgag tattttgata tgttaagaaa actttatgcc gataagcttg
    10261 taggcatgcc tcatcctgat gctatgatag gttatggcgc taaagatgca cttacaaaat
    10321 tagcagatac tgatcttgtt ccaagcgata cttatgctta ctatgatatt aagactttta
    10381 aagaaaattt tccaaaaagt ttggctaaag gtgaaagggt tttaaaacaa aatcgtggct
    10441 ctacaggaga gggaatttgg cgtgtgagtg tagagggtaa tgttagtgga gatagtttgc
    10501 ctttaaacac aaaaatcaaa tgtacagaag ctaaggataa tcatgtagaa catagagagc
    10561 ttggggaatt tatggatttt tgcgagcaat atatcatagg tgataatggt atgcttgtgg
    10621 atatgacttt tttaccgcgc attaaagaag gtgaaatcag acttttaatg ctttataaca
    10681 cccctgtaaa tgtagtgcat aaaaaaccag ccgaagatgc tgatgctttt tctgctacgc
    10741 tttttagtgg ggcaaaatat cgctatgata agccagaaga ttggaaaact ttggtggata
    10801 tgtttttagg cgagcttcct aaggtaaggg aaaaattagg caattacgac ttaccattga
    10861 tttggacggc tgattttatt ttagatactg atgaaaaggg caatgataaa tatgttttag
    10921 gcgagattaa ttgttcttgt gtaggtttta cttctcattt agaacttgct gatgaagtag
    10981 cttcaaatat tattaatatt gtaagtaaaa ctaaggctta gtctttaagc ttaatgtcca
    11041 ttttattatt gcaaaatgga cattcttttt ctattgtttt taagtttgag ctatattcta
    11101 tcgagaaaaa attttcacaa aatgagcatt ttgtatcttt ggttagcata ggataggaat
    11161 agtcaaattt atccaaaata aaatatttta tttttttatc cttaaatttc cttctttgtc
    11221 taacttatac tttatttatt attttaacgc ataaatagtt aattagaaat tttctgaata
    11281 ttttttataa aactgtatgg cttctttgca ttttttacat ttaaatttta cgcccttaag
    11341 ttgaattttt tgatgaattt caaatggtac atcatgcatt tgttctacgc attcgcatgt
    11401 ataaagataa actgtatttt catcatcttt ttcttctttg acttcttcaa agcttacttc
    11461 cccatcatct tcagaagtta aagaagatct tctgtattgt tcaactttca catctttata
    11521 gagtatatgt tctaaaagcc attttttaga aactgtgtaa agcttctctt ttaaatcatt
    11581 agtggttttt atgttttgta taagataaga catatcacga atgatatttt atgcatgatt
    11641 ttgtgttcat ttaaataagg ataatgaatt tcttgcatat aatcttcttc attactaaaa
    11701 tgttctttca tatagttaaa aagttctgtt aaaatttctt tgagttcttc tcgttttaca
    11761 aatttataaa cagcactttc aaccttgctt gcaagttcac aaagtttttg gtgttgaatg
    11821 tcaatcattg tgtcatgaat actgtattca ttccaagttg gaattagttt atctaaaagc
    11881 accttcttta atttttgtat ttaaaaatta atttaatata tttgagtgaa atattacata
//
LOCUS       DARGEM010000048        11745 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.048, whole genome shotgun sequence.
ACCESSION   DARGEM010000048 DARGEM010000000
VERSION     DARGEM010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11745
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.048"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(142..669)
                     /gene="tpx"
                     /locus_tag="SFZ78_000959"
     CDS             complement(142..669)
                     /gene="tpx"
                     /locus_tag="SFZ78_000959"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG8211841.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGAGAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVILVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(768..1454)
                     /gene="peb2"
                     /locus_tag="SFZ78_000960"
     CDS             complement(768..1454)
                     /gene="peb2"
                     /locus_tag="SFZ78_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG8211842.1"
                     /translation="MLVYGPGGPAPVLKELALKFEEKTKEKVIVTAGPTPAWIDKAKE
                     NADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVRPNNPKNIKNFEDILKDG
                     INVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKNSKAAVDEWNNNPNIDAL
                     IIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENKKALEFVDFIKSKEAQKV
                     WKKYTWKEVK"
     gene            complement(1550..3580)
                     /locus_tag="SFZ78_000961"
     CDS             complement(1550..3580)
                     /locus_tag="SFZ78_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG8211843.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            3708..4730
                     /locus_tag="SFZ78_000962"
     CDS             3708..4730
                     /locus_tag="SFZ78_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211844.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNTSIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKGKLKQENKQAKIEALKKEISKQQKILERE
                     RAVKKELQSNKSNKNKYLNTAREYLNIGKNSRLEPELSTENMKVYVLDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            4753..7365
                     /locus_tag="SFZ78_000963"
     CDS             4753..7365
                     /locus_tag="SFZ78_000963"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG8211845.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            7370..8380
                     /locus_tag="SFZ78_000964"
     CDS             7370..8380
                     /locus_tag="SFZ78_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG8211846.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGVIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            8377..9288
                     /locus_tag="SFZ78_000965"
     CDS             8377..9288
                     /locus_tag="SFZ78_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8211847.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLTIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            9480..10253
                     /locus_tag="SFZ78_000966"
     CDS             9480..10253
                     /locus_tag="SFZ78_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8211848.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIITKKGLVKFKDKALKTPLDIID
                     NPKKIKFIELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            10302..11072
                     /locus_tag="SFZ78_000967"
     CDS             10302..11072
                     /locus_tag="SFZ78_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8211849.1"
                     /translation="MNLFKIIILACTLNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            11082..>11745
                     /locus_tag="SFZ78_000968"
     CDS             11082..>11745
                     /locus_tag="SFZ78_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8211850.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWRLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATR"
BASE COUNT         4395 a         1815 c         1710 g         3825 t
ORIGIN      
        1 agttttattg tcctttttat attattatta cacaaaataa atattaaaaa taatcaactt
       61 aacaattaaa atataatcaa cttaaaataa taaaaaaatg aagatataaa aattaagccc
      121 taagaatggg cttaatcaaa attaatggca accacaacca ccgcagcagc tagagccacc
      181 aaaaaatgca tcaagttttg caatatctgg catttctgtg atttcattta caagttcttt
      241 atatgccact ttaccctctt taatcacaaa tacggcacga gctaaaagcc cttctaaagc
      301 accttcattt atcaaaacac catatttttc accaaattct tttgccacaa aatcacttgc
      361 aacacttaaa ttttcaatac cttctgtact gcaaaatctt cccatagcaa aaggtaagtc
      421 catacttact agaatcactt cagcaccatt gtaactggct acttttttat taaattctct
      481 agcctctgta gcacaaactg gtgtatctaa gcttggaaca cttaaaatga tttgagtttt
      541 acccgctgca ccgatttcaa tcacgcttaa atctttagct ttaagattta ccttaggagc
      601 acctgctcca acttctactg aatttccttt aagttttaca ggatttcctt taaaatttac
      661 tgtactcatt taatttcctt ttttgatatt ttaaacatta ttgcaattaa tgttttagga
      721 gtgattatat cctataaata ttaattattt tttaatttca ctcaaaatta ttttacttct
      781 ttccaagtat attttttcca cactttttga gcttccttac tcttaataaa atctacaaat
      841 tctaaagctt ttttattttc taaacctttt tttgtaggag caatttcagc tgcacgataa
      901 atcactgcat ttttatcttt gataaataaa gctttatcat cgcctaaagc ctttgcccaa
      961 tgagaccaaa tgattaaagc atcaatattt ggattgttat tccactcatc tacagcagct
     1021 ttggaatttt tagcataaat ttttatattt ttacgtaatt ttaccaaatt ttctcttttt
     1081 gcacttttta aagccatatc ttcataaagt ccaacttgtc ctgcaccatc aaccaccata
     1141 acatttatgc catcttttaa aatgtcttca aaatttttaa tattttttgg attatttgga
     1201 cgcacgataa tacctgatgg acgcacattt aaaacgctta aattttccaa acttaaactt
     1261 ggaatttttt tagcaaaatc atccatcatt gaagtattgc ctgaaaaaat caaatctgca
     1321 ttttcttttg ctttgtctat ccaagctgga gttggacctg cggttacaat caccttttct
     1381 tttgtttttt cttcaaattt taaagcaagc tcttttagca caggagcggg accacctgga
     1441 ccataaacta aaatttcagc atttaaaaaa cttgctgctg ctaaacttaa aaattaatat
     1501 ttttttcata aaataaacct ttctttataa taatataaag gaaattttat caatctatag
     1561 ttaactctcc cttgcaaagc cctgcttcta taagaaaacg agaaggagcg aaagaagttt
     1621 ttttattttt atcatattta gcatagctta aataaagtat attttttgcc ctagttactg
     1681 caacataaaa aagccttctt tcttcttcta aacttccacc cattcccata agcttttgat
     1741 taggaaagcg accttgcgca agatcaatca caaaaacaag atcaaattcc aagcccttgc
     1801 ttgcatgtac gctaagcaaa ttaactcctt tgccactact catttcactt gcacctaaag
     1861 ttagaaaatt ataatactta taaatatcgc tataattttt tgtaagctct tttaagacat
     1921 tgaattttgt ttctattttt tctaaatttt cactctttct taataaatcc acctgtcctg
     1981 ctttatttgt tgctcttttg gttgcaagtt cttcacaaat ttctctataa aaagaatttt
     2041 cacaaattaa atttaccaaa gtcaaagaat gttttatttc catagctttt tttaaaaaaa
     2101 gataaatttt ttctaaattt ctagcacata aatcattgat ttttgaaagt tttaaaatag
     2161 gatgtgcatc aaattcactc tcaaatttaa aacgagtttc gctggctaat tcttctaaat
     2221 ccgcaaaaag cccaagttga taatttcttt tttgatgatt ttgcaaattt acatttttat
     2281 caggatctaa aaaacctttt attaaatttc catgccctaa ttttaaaagt gcgtcaaaaa
     2341 tttcttttgc taaaactcca cccacacctt tggtgtattg aaccaaatga ataaaagcca
     2401 taatatcctt aggatttacc acaagagcaa gcatagagct aaaagcttta acttctaaac
     2461 tttcaaaaaa acttccactt ccctttctca cacttgcaat gccctgctcc cttaaagcta
     2521 cttcaacccc atcagcactt gagttgttgc gaaaaatcac ggcaatttct tccaaactta
     2581 ctccgcttgt aagtatcatt ttggctatat tttgatactg atcaaataat tcttcaaaag
     2641 taagcaaaga tggggcttta aactcatcat ttcttgtaac aataagttct tttggatata
     2701 atctttcgtt atttaaaatc actttattag ccaaagctaa aatacttctt gatgaacggt
     2761 agtttttatt taaagaaaaa atttttgcat ctttaaaacg atctttaaac ccacctatga
     2821 tattaatatc cgctccattg aaagcataaa tactttgatc ataatcccct acgcaaaaca
     2881 aacttttact atgaaaagcc tctattaagg aactttgcaa agtatttgtg tcttgatatt
     2941 catctactaa aatttcatca aattcatatt tttcttcttt taaaagatct tttagattga
     3001 taagcaagtc attaaaatct acataattaa aacgcttttt ttcattatca tattctttta
     3061 aaatatcttc ataaatttca gcataaatac tttgatcttc gtagttttgg caaaaccaag
     3121 tataaaaatc ttgattgtgc gctttgtttt gaaacaaaga ataaagatca tataaataac
     3181 ttgattgata aggttttata tcacttaaat gcctaaaagt tcttttttca tagacacttt
     3241 taagtagagt ttttaactcg cttgcttgct ttaaggctat atttttatcc gcatttctaa
     3301 gtaaggtata agccgtacta tgaaaagttc ctgcaagtat tttactggta atatttttat
     3361 caaaaaattt ccctaaacgc cctatcattt ctttgctggc tttatttgtg aaagttaaaa
     3421 gcatgatttt ttgaggtgcc actcccttgc ttaaaagata agaaattctt gcaacaatag
     3481 tagaagtttt tcccgtccct gcacttgcaa taacaagatt gtgtccaaaa tcagcagtag
     3541 cagcaagata ttgttcatta tttaattttg aaagtggcat tattttcctt ataaaagtta
     3601 aaattataaa aaaaaattac ttaaaaatat aaaaatttaa aattacttta tattagatta
     3661 tagtacaatg ctaaattatt taactttctg tttttaaggg atagcaaatg aatttgaaaa
     3721 ttttttctat tattgttggc atattaattg ctgttattgt gatattaggt ggaacatatt
     3781 attatctttt tgaatattca aaaccaaaga attacacctt aaataccaac acttacaccg
     3841 aacaaaaatc gtataccaat aactacgata attcctattc accctcgatc caaaccaaca
     3901 atagttcatc aaatgtaaat actaataaca ataccatcca aaagcaagaa acaaacccat
     3961 tattagacga aaatcaaagc ttaaataacg atacatttaa tacatcaata agcgaaaaca
     4021 atcaaagctt aaataatgac accaatacaa gtaataatat taatacaaat gaaaataagc
     4081 aaattttaga tacggataaa ggaaaattaa aacaagaaaa taaacaagcc aaaatagaag
     4141 ctcttaaaaa agaaatcagt aaacaacaaa agatcttaga aagagaaaga gctgtaaaaa
     4201 aagaacttca atcaaacaaa tcaaacaaaa ataaatatct aaataccgct agagagtatc
     4261 taaacatagg aaaaaacagt cgtttagaac ctgagcttag cacagaaaat atgaaagttt
     4321 atgttttaga tggaaaattt ttaagccaat acagaatcaa tctgttaaaa gatatgctaa
     4381 gcattataca agataatgca aaagattatt atctaagtat ttttgttaaa atgctaccaa
     4441 aaggggaaat gaaattaact atctataaca aagaaattat cttttcagat atgaaaaaag
     4501 cttataaata tattagttta gatagattaa gcccatattt aaacaatcca aaagaattaa
     4561 atgaacatgt agcacgtgaa gaaattttag aaagacttaa acttcaaatt aaaaaagatg
     4621 gcaaaggaag tgatttttct aaacatatca aaagtttgaa aactggactt aatacagcac
     4681 aatatttctt cccgttttgt gaaattatag aaattagctc tattaaataa gctaaaacaa
     4741 taaaggcaaa taatgtatga taaaaattta gaaaaagagt attatcaaat ttgcgaagaa
     4801 cgcggatatt ttgaaatcga tggcaataaa accatacaag aaaaagataa aaatttctgc
     4861 attatgatgc ctcctcctaa tgtcactgga gttttacaca taggacatgc tttaactttt
     4921 actctacaag atattatgac gcgttataaa agaatggatg gctataaggt tctttatcaa
     4981 ccagggcttg atcacgcagg tattgccact caaaatgttg tagaaaaaca actccttgct
     5041 caaggcatta aaaaagaaga actaggtaga gaggaattta tagaaaaagt ctgggagtgg
     5101 aaagagcaaa gcggtggaaa aattttagac caaatgagaa cactaggcat cactcctgca
     5161 tggagtcgct tgcgttttac tatggatgaa ggtttggtta atgccgtaaa aaaagccttt
     5221 gtagaacttt atgataaaag acttattgta cgtggaaact acatgataaa ttggtgtact
     5281 catgatggcg ctttaagtga tatagaagtt gaatacaaag aaaacaaagg aaaactttat
     5341 catattaaat actttttaaa agatagcgat gaatttttag tagtagccac aacgcgtcct
     5401 gaaacttttt ttggcgatac tgcagttatg gtgcatcctg atgatgaacg ctatgctaaa
     5461 tttgtggaca aagaagtgat tttgcctata agcaaaaaag ccattaaaat catagccgat
     5521 gaacatgtag aaaaagaatt tggaacagga gttgtaaaag ttactcccgc tcatgacatg
     5581 aacgattatg aagtaggact tagacataat ttagatttta taagtgtttt tgatgaaaaa
     5641 ggaattttaa acgaacattg tttagagttt caaggtttag aacgcttaga agcaagagaa
     5701 aaaatcgtag ccaaacttga aagtcttggt tttatagaaa aaatagaaga gtataacaat
     5761 caaataggat attgttatcg ttgcaacaat atagttgaac cttatatctc caaacaatgg
     5821 tttgtaaaaa aagaaatcgc ccaagaaagt atagaaaaag ttgcgcttgg agaaagtaaa
     5881 ttttacccaa atcactggat aaatagcttt aatgcttgga tgaaagattt aagagattgg
     5941 tgtatttcaa gacaactttg gtgggggcat caaattcctg tgtattattg cgaatgctct
     6001 catgaatggg caagccaaca tacgcctaaa acttgtccaa aatgtcaaag tcaaaatttc
     6061 aaacaagatg aagatgtgct tgatacttgg ttttcttcag gactttgggc tatgagtact
     6121 ctaggctggg gaaatgaaaa ttggggtaaa gataaaattt ggtctgaaaa ggatttaaaa
     6181 gatttttatc ccaattcttt actcattaca ggttttgata ttttattttt ctgggtggct
     6241 agaatgatgt ttcaaagcac taatgcctta catcaacttc cttttaaaga tatttattta
     6301 catgctcttg tgaaagatga gcaaggtaga aaaatgagta aaagccttgg aaatgttatc
     6361 gacccaaatg aaagcattaa agaatatagt gctgatattt tacgctttac tttagcactt
     6421 cttgctatac aaggacgcga tattaaactt agcaatgata aacttttaca agttagaaat
     6481 tttacaaata aaatttataa cgctacaaat tatctgcttt taaatgaaag taaatttgaa
     6541 gatttggaaa atatcacact tcattcagaa ttagcaaaat atatttatgc caaatttcaa
     6601 acttgtgtta aggatgtaag agaaaattta gacaattatc gctttaatga tgcggctaat
     6661 actctatata aattcttttg ggatgatttt tgcgattggg gtatagagct tagcaaagcc
     6721 gaaaaatcaa gcgttaaaga acttggtagt attttcaaag aagctttaaa acttttaaat
     6781 cctttcatgc cttttatcag cgagtattta taccacaaac taagcgatac agaacttaaa
     6841 acaagccctt ctattatgat aagcaaatat ccaaaattta aagaacaaga taaaaatata
     6901 gaaaaaatct tttctttgct catagaaagc atagttagta tccgccgtgc taaaagttta
     6961 atcgatcttg gaaattctaa aatagaaaaa gcttatatca aatttaacga taaaaaaatc
     7021 aaagatgaaa tcaaagctta tatgaatttt atcataatgc tcgcaaagtg cgagcaaata
     7081 gaatttagtg aagaaaaatt accaaaggca atatgtgatg ttagcgagaa tttagaaatt
     7141 tttattacgc ttgaaaatgt tgatttaagt ggtattttaa caagacttga aaatcaaaaa
     7201 aataagcttg aaaaagaaag tttcaagctt aactccatgc tttcaaatga aaaattcatc
     7261 gctaacgcac ctaaagaggt ggtggagcaa aataaagaag ctctagaaaa tttaaaaatt
     7321 caacttgaaa aaatatcagt tgaacttcaa aatctaagag gttaaaaatt tgataaaaat
     7381 aaaaaattta aaaaaatatt atggcaagga actcgtgata aacgatgttt ctttggagat
     7441 taaaaagggt gaaatttacg ccatagtagg tcatagtgga gctggaaaat ccactctttt
     7501 aagatgtatt aatggacttg agaattatca agaaggaagt ttaaaagtct ttgatcaaga
     7561 aattaaagat ttaagtcaaa aaaaatcaaa agagttaaga atgcttagaa aagatatagg
     7621 gatgattttt caaaattttg ccctaatgga gcgcaaaaat gtatttgaaa atgttgctat
     7681 gcctttaaga acacactata ctcagtgtaa atttcatgcc aagcttttta ataaagaata
     7741 catgagcgaa aaagaaattg cccaaaaagt caattcctta cttgaaatcg tagggcttga
     7801 tcataaaaac aaatcctacc caagagaact gagcggaggg caaaaacaac gcgttgctat
     7861 tgctagagcc ttagctttaa acccaaaaat tttacttagt gacgaagcta cttcggctct
     7921 tgatccaaac actacaaaaa atattttaga gcttatatct aaaatcaatg ctgaatttgg
     7981 gattactgtt gttttagtaa ctcacgaaat ggatgtggta aaagacatag ctcaaaaagc
     8041 tttattactt gaacatggac aaatcatagg aagtggagta attgatgagc tttttttaag
     8101 gcctaatgcc aaaatgaaag aatttttagg agaaagcgac ttcttgcctg agcacggact
     8161 taatatcaaa ctttactttc caaaagaagt tgcccaaaat agcgtcatta ctcatatggc
     8221 aagaactcta aatatagact ttaacatagt ttggggtaaa atagaaaaac tgaatggaaa
     8281 agccttggga aatttagtta taaatataaa tgaaaaggat aaagacaagg ttcttgatta
     8341 catagaaaaa agtggagtat tatgggaggt ggcatcatga atgaagaaaa catctctatc
     8401 atcagtgctt tttttagtag aatttctcaa ttttttaatg aattttcttg gcaggatatt
     8461 aaagaagtga gtttaagttc tatcacgagt ttcaatgaaa attatgaaaa cattttaaaa
     8521 cctgcgctta atgaaacaat ttatatgagt ttaatggctg tactatttgg atttttattg
     8581 gctatcattc ctggaatttt acttgctatt tgggataaaa atggaattaa agaaaataaa
     8641 atcgcttata gtattttaga ttttattacc aatatattac gcgcctttcc atttttaatt
     8701 cttatagttg ttcttttacc actttctaaa atcatagtag gcacaagcat aggtacaaat
     8761 gctgccatag ttccattaac tatcggaata gctccttact tggcaaagat gcttgaaagc
     8821 gcttttaaag aaatagacaa aggaatcata gaagctgcaa aaagttatgg tgctagcaat
     8881 attcaaatta ttttcaaggt tatctttagt gaagctcttc ctgctataat tagcggaatt
     8941 accctaactt tgatctttac cattggtttt tctgctcttg ctggaactgt cggtggagga
     9001 ggattaggag atgtagctat tcgctatggt tatgaaagat ttaacaaaga agttatgatt
     9061 caaactgtag ttattttact tatattagtt caattagttc aaattctagg taatttattt
     9121 tatacttggg ctaaaaatag taaaactaca tatatcattg ccactctatt gattttactt
     9181 ggagttagta tagttatcaa tataaacaat gatgaaaatt tcttttggca agtaattgtt
     9241 tttatcttat ttttaggaag tttgctttat aaaggtttca aaaaataagg agattatatc
     9301 tccttttaag ataaatataa gtttttttaa gtaaaattta aacaaaaaat taaaggaatt
     9361 aaaatgatgt atcagatgcg ttaatctgac tatcaacaag tttttatatg cttcttcctg
     9421 atagtcagag tgaatttatt aagattaaag caagcacaaa atgactaaaa aggaaaaaaa
     9481 tgaaaatcaa atctttattt atagcaagta ttttaacatt aagtcttaat gcaaatgcat
     9541 tagaaaccat cacagttgca gcaactcccg tccctcatgc tgaaatccta gaacaagtaa
     9601 aacctgattt agaaaaacaa ggctataaac ttgaaatcaa agaatttaca gattatgttt
     9661 tacctaatct agctgttgat aacggagaag ccgatgcaaa ttttttccaa cacactcctt
     9721 atttggaaga atttaataaa aacaaaggca ccaaacttat caaagtagct gccatacaca
     9781 tagaacctat ggctgtttac tccaagaaat ataaaagtct agatgatatt aaagaagggg
     9841 ttaaaatcgc cattccaaat gatccaacca atgaaagtag agctttagat attattacaa
     9901 aaaaaggttt ggtaaaattt aaagataagg ctttaaaaac acctcttgat attatagaca
     9961 atcctaaaaa aattaaattt atagaattaa agcccgcaca acttccaaga gctttagatg
    10021 atgttgattt tgctgtaatt aattccaact acgctctctc tgcaaatcta aatcctgcaa
    10081 aagatagcgt atttatcgaa gataaagaaa gcccgtatgc aaacattctt gttgtaagag
    10141 tgggacatga aaacgatcca aaaatcaaag ccttaatcca agctctacaa agtgataaaa
    10201 tcaaacaatt tatcatagaa aaatacaacg gatctgtttt acctgctttt taattttgtc
    10261 ccttacctag ggactttttt cttaaataca aaggagtttt tatgaattta tttaaaatta
    10321 ttatactcgc ttgcactcta aatttatcta gcctatttgc acaaaacatt actataggag
    10381 ccactccaaa tccttttggt agcttactag aactaatgaa agatgatttt aaaaacaaag
    10441 ggtatgagct taaaatagta gaattttcag actatatttt gcccaatcgt gcattagagg
    10501 aaaaagaact tgatgcaaat ttatatcaac acaaaccttt tttagaagaa tacaacctaa
    10561 aaaaaggttc aaatttaatt gcaacaacgc ctgtacttat agctccagta ggagtttata
    10621 gtaaaaaaat caaaaattta gaaaatctta aagaaggtgc tagagttgct atacctaatg
    10681 atgcgaccaa tgaaagcaga gctttagagc ttttagagaa agcaaaatta atagagctta
    10741 acaaaaatac tctaaaaacc ccattggaca taaacaaaaa tccaaaaaaa cttaaattta
    10801 tagagcttaa agccgcacaa cttccaaggg ctttggatga tgttgatatt gctataatta
    10861 attctaattt cgcacttgga gctggtctga atccaagtaa agatactatt tttagggaag
    10921 ataaaaatag cccttatgta aattatgttg tggtacgctc agaagataaa aatagcgaaa
    10981 aaaccaaagt aattgatgaa attttaagaa gcgataaatt taaagccatc attaatgaac
    11041 attataaaga tatattaatc ccagcttttt aggagtatag catgaatatt aaaaaaatat
    11101 ttttaagtgt tttatttaca attagcctta gttttggggc agataaaacc ataatcatag
    11161 gtgcaacacc aacgccttat gctgaaattt taaatttctc taaaccctta tttcaagaaa
    11221 aaggttggag gttgatagtt aaggaattta atgactataa tatacctaat atcgctttaa
    11281 atgagaaaga tttagatgca aatttatatc agcataaacc ttttttagat gattttaata
    11341 cccacaaagg aacaaattta agttctttag gtgctattgt tttagttcct atggctatat
    11401 attctaactc cataaaagat ataaaagaca ttcctaatgg tgctaaaatc gctataccta
    11461 atgatgctac caatgaaagc agagctcttg atttactagc taaagcaaat ttaatagagt
    11521 ttaaaagtca aagcaccctt aaaaccccta ttgacataag taaaaatcca aaaaaactta
    11581 aatttataga gcttaaagcc gcacaacttc caagagccct aaatgatact gatttggcta
    11641 ttattaccac aaactatgct cttggagcag gcttaaaccc tttaaaagat ggtattttta
    11701 tggaagataa agatagttta tatgctattg ttttagctac aagaa
//
LOCUS       DARGEM010000049        11703 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.049, whole genome shotgun sequence.
ACCESSION   DARGEM010000049 DARGEM010000000
VERSION     DARGEM010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11703
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.049"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            102..1970
                     /gene="rpoD"
                     /locus_tag="SFZ78_000969"
     CDS             102..1970
                     /gene="rpoD"
                     /locus_tag="SFZ78_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG8211851.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(1986..2498)
                     /locus_tag="SFZ78_000970"
     CDS             complement(1986..2498)
                     /locus_tag="SFZ78_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG8211852.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2495..3013)
                     /locus_tag="SFZ78_000971"
     CDS             complement(2495..3013)
                     /locus_tag="SFZ78_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG8211853.1"
                     /translation="MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMF
                     LHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFG
                     ENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
                     CGYILAKIKEVK"
     gene            3112..3528
                     /locus_tag="SFZ78_000972"
     CDS             3112..3528
                     /locus_tag="SFZ78_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8211854.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(3537..5153)
                     /locus_tag="SFZ78_000973"
     CDS             complement(3537..5153)
                     /locus_tag="SFZ78_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8211855.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGIIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKELNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(5157..6407)
                     /gene="mtaB"
                     /locus_tag="SFZ78_000974"
     CDS             complement(5157..6407)
                     /gene="mtaB"
                     /locus_tag="SFZ78_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG8211856.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(6404..7975)
                     /locus_tag="SFZ78_000975"
     CDS             complement(6404..7975)
                     /locus_tag="SFZ78_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG8211857.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQKHF
                     EQHHENMYFHARNKD"
     gene            complement(7972..9027)
                     /locus_tag="SFZ78_000976"
     CDS             complement(7972..9027)
                     /locus_tag="SFZ78_000976"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG8211858.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(9073..10473)
                     /locus_tag="SFZ78_000977"
     CDS             complement(9073..10473)
                     /locus_tag="SFZ78_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG8211859.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNIQERVLDTTLKLIQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            10503..11624
                     /gene="tgt"
                     /locus_tag="SFZ78_000978"
     CDS             10503..11624
                     /gene="tgt"
                     /locus_tag="SFZ78_000978"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG8211860.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            11626..>11703
                     /locus_tag="SFZ78_000979"
     CDS             11626..>11703
                     /locus_tag="SFZ78_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8211861.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYG"
BASE COUNT         4322 a         1936 c         1448 g         3997 t
ORIGIN      
        1 tgaaaaaata ttcaaatcat aaacataata accgatttat atagaaagtt aagcaatttt
       61 tagataaaat ccaaagctta tataaatttc aaggataatc aatgaacgcc aaaactcaag
      121 aagctgaatt agaagaatta tttcaagaaa atgcaaaaga ttatatcaca tatgaaaaat
      181 tggtaaaata tcttacaaaa caaccaagtg catcaaccgc taaaaaagtg caagcattaa
      241 tgaaaaaaca caaagtgcaa cttttttcag cagctgaaat tgcacaaatg aaaaacatag
      301 aagatgcaaa aagacttcaa gaagaaaaac aaaaactcca agatacaagc cttgagaacg
      361 aatttgattt agccaatgaa aacgatttat tagaatggag cagatcagac tctcctgttc
      421 gtatgtattt aagagaaatg ggacaaattg ctttattaaa caaagatgaa gaaattgaaa
      481 tttccaaaaa aatagaactt ggcgaagata ttatcattga tgctttttgt tctgtacctt
      541 atttgataga ttttatttta gattataaag aacctttaat aaacagagaa agaagggtaa
      601 aagaactatt taaaagcttt gacgatgaag aaaaaagtga tgataaactt gatgaacttg
      661 atatagatga agatgaagaa aacgaaacag aattagaatc agatgaagaa aatactaaaa
      721 aaaacagcaa aaaagaagat gaaagaactt taaaagttat agaaaaattt aaagctctag
      781 aaaaagctaa aaaagattgg ctaaaaacat ccaaagacaa agaaagcgga gatgaacttt
      841 tagataaatt aagcattgcg ttcaaaaaaa atattttaaa agaaaaatta atggatctag
      901 gccctacttc aaaacttatt agcgaaatcg taaaatcaat ggaaactgca ctaaaaagtg
      961 atgaagaatt tgacaaagaa cttaagcgtt tagaataccg cttacctatg ttttctgatg
     1021 aacttaaaaa acgccatgca gatattttaa aagatattac aaaattgagc aaagaagaaa
     1081 tcacagagcg agctttagaa acaaccatgg taagcactta tatggaaatt aaaaaactat
     1141 ttcaaactaa agaagccagt gaaaaaagct ttgatcttga aaaatcacgc ttaaaagaaa
     1201 ttttggagca aattaaacgc ggtaaaaaaa tctctgatga agcaaaagga agaatggcaa
     1261 aatcaaactt gcgccttgtt gtaagcatag ctaaacgcta cacaaatcgt ggtctgcctt
     1321 tcttagacct tatccaagaa ggaaatatag gtttgatgaa agctgtggat aaatttgaat
     1381 acaaaagggg ttataaattt tccacttatg caacttggtg gatcaggcaa gctatttcaa
     1441 gggctatagc tgatcaagca agaaccataa gaattccaat ccatatgata gaaaccatca
     1501 atcaaattaa caaaattatc cgcgaacatc tacaaaaaga tggaaaagaa cctgatgtca
     1561 gtgttatagc taaagaagta ggtttaagcg tagataaggt taaacaagtt attaaaatca
     1621 caaaagaacc aatttctctt gaagctccaa taggaaatga agatgatggt aaatttggag
     1681 attttgttga agatagaaat tcactttctc caatggatca tatcttaaag gatgatttaa
     1741 aagaacaaat tgatgaagtt ttagatcaat taaacgatag agaaaaagcg gtaattcgta
     1801 tgcgttttgg tttaatggat gatgaaagtg atagaacttt agaggaaatt ggaaaggaac
     1861 ttaatgtcac tcgagaaaga gtgagacaaa tagaaagctc agctataaaa aaactcaaac
     1921 accctaaagt aggaagaaaa ctaaaaaatt atatagaagg ttggaagtaa gagtcaatct
     1981 ccttactaaa aacccagatc tttttcttct tttaacttgc gtacatgttc aaaaaaaact
     2041 aattttccgc tatgtttttt taaattttta aattccttaa tatcaaattc taaacacaag
     2101 atagaagaag ttggaaaaga agctaaacat agcgaactta ataactctcc aagctccatt
     2161 aaactaggat tatgacccac taaaaatact tcattaaact catcatcaat atcttgcaga
     2221 atttttagca aattttcaac attgcaaaga tacaatcttt catcaaaaca aattctattt
     2281 ttatcaaaat tataaaattt ggctattttt ttcgctgttt tagcggttct aacagcagga
     2341 cttgatagca ccaaatcagg atgaatttca tgcgaagcaa gatttttaaa aagttttttt
     2401 aaatcttcct ttccactctt agtaagtttt ctttcaaaat catcgatgtc ttcactctta
     2461 cttgcttttg catgtcttat aatataaatt tttttcattt tacctctttt attttagcta
     2521 aaatataacc acacataaac ccgaaaatat gaccatacca agcaacattt acccccataa
     2581 gcaatggcac aaaactcata agtaaaattg ccactataag tccttttgtg ctatttttat
     2641 caataacagc ataaaagccc attaaaacac aaattgcacc actagcgcct atgacattta
     2701 tattttctcc aaaatattta aaatcaaaat acacataaaa aacacttaaa agtgagcaca
     2761 acaatccgcc aataaaataa ataaaaataa aacacaaagc acccaaataa gtttctaaca
     2821 tacgcccaaa ttgaaacaaa actatcatat ttaatataag atgagttaaa tttccatgta
     2881 aaaacattga acttaaaagc tgccaataag ctccattaaa aaataaaata ttcaaaccaa
     2941 ggatattgta ataatcataa gaaatcaaaa aataacataa aatatttaaa aaaattaaaa
     3001 aaattgtaag caaaatataa aacctttatt ttttataata ttgtcttaaa attcacataa
     3061 aattcacata aattctttac aattttacta aaaaataatt taggaaaaat attgaaaatt
     3121 aaatttttaa atattattac tattttaagt ttatctttaa atgctgatat aataatttct
     3181 gctgataatt taccaaatgt ttctaaagaa tttttacaac ataatttcaa agcgcctata
     3241 gggatcgtgc aaaaagacaa aaattcctat gaagtctatc ttagcgatgg aacagagctt
     3301 gaatttgata tagatggagc ttggaaggaa attgaaaata aagcctttcc ttttgatcta
     3361 gattttttac ctcaaaattt agccaatatc atcaaaagcg aatttccaaa tacaaaagct
     3421 agagaaattg aaagaaaaat caaccattat aagattaaac ttgataacga tataaaaatt
     3481 cttatagatt ttaatggaac tatcttatat aaagaatttg atgattaaac atatcatcaa
     3541 acctgcatta tatctttaac atcgtcatat tctatctttt ctttttcaag caaaagctct
     3601 gataatttta aaattttatc cttcatagaa tttaaaaatt catccatttc ttttttttgt
     3661 tcacttaaat ttaactcttt caacatatca aaactcaaca tataatcaag caattcttta
     3721 atctttaaaa aatcatcttg cgagttagta taactttcat tgtaaatcaa tctcatggct
     3781 ctagaaccag ccaaataaac ttttatacga ttgataagct ctgattttga tcttatatta
     3841 tgctcatatt ctttaaaacg atcttcaatg agagtgattt tttcaaatcc tatgtcaaaa
     3901 taatacgcac tcaaagcttt tgcagcttga taagtggctt gaattttctt ctcttcatca
     3961 ttaaaactta aaatcttttt cttacctaaa agaactttat ttaatacagc ataaaaatcg
     4021 ctttcctcaa ctaaagcact atttcttctt aaagcattaa ttgctgcttc attgaccaaa
     4081 gtttcaagcc ctgctccact aaaacctacg cttgctttag cgattttatt taaattgata
     4141 ttattgtttt tatctttcat ataaatttct aaaattttaa gtctatcctt aaaatcaggc
     4201 aaagataaaa aaattctcct atcaaaacgc cccgaacgca ataaagcagg atccataagt
     4261 tcgattttat ttgtcgcagc tataactata atcccgctat tgtcctcaaa accatccatt
     4321 tgagttaaaa gttgatttaa agtgctatct ctttcaacat ttgacatttc tcctcttgcc
     4381 ttacctacgg catctatttc atcaataaaa actatgctag gcgccatcat tttagctttt
     4441 gaaaaaagct ctctaactct ttttgcaccc atacctacat aaatttcaac aaaacttgaa
     4501 ccactttgat aaaaaaatgg cacccctgct tctcctgcaa ctgcttttgc tatcaatgtt
     4561 tttcctacac caggtgggcc taccattaaa acaccttttg gcatttttac accaaattct
     4621 ttatattttt taggattttg taaaaaatcc acaagttcgc ttagctccat tttaacttca
     4681 tcaacacctg ctacatcatt aaaagtaata tttgaaatca caggttttat atgggaactt
     4741 tctaaattta tatttgaatt ttgagcttga gtgtgatttt gattcttatt tgatattgga
     4801 tatttagcca actctttttt acgagcaaaa taaccaagac ttataaaaag tgcgataata
     4861 aaaataagta aaacaaaaaa cacccaaagc gtattatctt ttttaacctc tacgggaact
     4921 tttgataaaa gtgtttttat atctatgcca tcttttataa ttacgtaatt ttcaccttct
     4981 gccttaagcc aaatttcgtc tttatcaatc acagcttttt ggattaaatt ttggcttaat
     5041 agactttgat aaagattttc atctatatat ttaggttcat ttttaaaata taaaattccc
     5101 aaaagcatac ataaaaccat aaaagatgct aaaattatct ttttattttt cattatctag
     5161 ccttttaaat ttgtaaagtt agacttttct tgtacttcat attcagatat aacgatccat
     5221 tctttagcta tatctttatc acttttaatt ttgatcttat taaaaaactg atcataaccc
     5281 tcaaaaaaac catctttttg attttctacc aaaacttcaa gtgaaacttg attttttttc
     5341 ctaaattcat aattattttt ttctactatg gattttaaag tgtttagcct ttctttagct
     5401 aaagttccat ttatcacatc tttcatggta gcagaatgcg tgttgtttct agggctaaaa
     5461 ataaaagcat ggatatgagt gagtggaaat tctttaaaat ttcttaaagc ttcttgccat
     5521 agctcttcac tctcgcctgg atgagctact ataaaatccg tccctaaagc atatcctttg
     5581 cttgctatag tattaaaaag ctttaaatca ttatccgtat gtgatcttct tctcattata
     5641 cgaagcattt tttcacttgt atgttgcaat gcaatatgta aatgcctttc aagccaagct
     5701 tcatctaaga tttctaaaaa actttcatca agctgtgcag gttctaaact acctagcctt
     5761 atgcgtttta tacctaaaat ttgtcccatt ttttgcaaaa gcttgcctag ggttgtgcca
     5821 tttttaagcc catatgaacc tatattagtc cctgttaaaa caatttcact ataaccatta
     5881 gctcccaaaa tttcaacctg ttttaaaaga gctttttcat ccacacttct tgattttccc
     5941 ctcacgctag gaataataca ataagaacaa gcaaaatcac aaccttcttg aattttcaca
     6001 aaagctttgg tatgattttc atactcacaa actatatctt tatcaataaa atttaaattt
     6061 ccaagttcat aaaaacttgt ctttgctcct aaaaattcat tgattttatc tttatttgac
     6121 gctccaagca ctccaaaaac ttgcttttta tctaaaagct ccttaccttt gcttacagca
     6181 ccacaacctg taagtataac tttaatgcct tttttttgca tggtatttac ataagacttt
     6241 atcccgctat cagctccatt tgtaaccgtg caagaattta caacgataat ttgtgcttta
     6301 ttctcatcat ttataatctc ataatctttt acataacttt ttaaaagctc tgtatcataa
     6361 atatttgtgc gacacccaaa ggttttaaaa aaaacttttt ctttcaatcc ttattccttg
     6421 catgaaaata catattttca tgatgttgtt caaaatgttt ttgatttaaa tttcctaaat
     6481 ataaattttg cgatggataa gcaattttta tatctttatg cttattaaat tcttttataa
     6541 tctctttgct aatcgtactt cttaatacca aagccgcata agcattagtc atataccatg
     6601 cagaaattct cattccccaa tgttcaaaaa acataaaaaa ccttggctcc actttaggat
     6661 ttttaatact atattcatgt tgtaaacgag ctatattttt tctagcaagc tcagtataac
     6721 ctttggcatg gcgtgtaaca atattttcca caatttcttg agctttgtca agattgctat
     6781 caaaagtaac acttatatca atgccatcaa gcacggtttt cataccatga tgggtataat
     6841 tagcaagcaa atttgtaaaa acatagttat taggaataaa tataatacgc ccactacgac
     6901 gatttttatt ataagtttca agcgtaagct cttcataaag agtaatgcgt aaaaaagaaa
     6961 tgtctataat atctcctata taggtagtat cattttgaaa aacttttaca cgatccccta
     7021 ctctaaaact tccgccaaaa ataatcacac accatccaag catagacata aacatatctt
     7081 tcatagcaat agctaagccc gcagaggcaa aaccaagtat agttacaaga taagtaatat
     7141 tttctatata agcaaagagc aaaataagaa aaataatatt tatattaata aaattaataa
     7201 tcttcgtagc agtataatat ctttcactat ccttaatata ttttttagca ataaatttca
     7261 acataaaagc tatagctata acaataacaa tagcaacaag tatatttaca gcccttaagc
     7321 tttgaacttt aatctcagca cttactcgag aaagctcttc atcaattttt ttctcataaa
     7381 cagaataaga aacactagca aaatttaaag cttgctcaaa ttcttccagc tttttatccg
     7441 aagcttttaa agcttctata ttctcaacac ttggtttaag ctcaactaat tccttaagtt
     7501 ctgagttttt ttccctgatt ttatctacta aatttttaaa atcattaaat ttaaatatat
     7561 actcttcctt ttctcctttt aatttcttaa tatgagaaaa agctcctata atagccaaag
     7621 gattagtaag cttagataaa gtttctatat tatcaggggc actaagactt tgtgcaaaat
     7681 ttaaatcttt atattcttta agcaagttca attgctcttc taaatttgct atcttgcgtt
     7741 taagttcttc ttgttggtga atatcggaag tcttttttaa attaagattt aaaatgatta
     7801 attcatcatt tatatcttga tattttataa aattttcata acgtatattc caaatactag
     7861 cactgattac agtatttaaa gtattaattt tctcatttat attattaata atagtccgat
     7921 ttacatcacc aaaagcaaaa acaacaaaaa aggttaaaat aataattttt ttcattggaa
     7981 ttctcttaaa gttgcaatta tatcttcttt agaaatatca ccttttatca aacccttacc
     8041 caaaggacta gcaagaacaa aattgatttt tttattagag ctttttttat ccatgaaaaa
     8101 agcttcataa aattcatcta cattgttgat tttatatgat attggcaaac cgaatttaag
     8161 taaaatatct tttattcttt gactttgcat tttatccaaa agccctaaat ttaaagccaa
     8221 ttgatttgcc ataaccatac ctatagccac cgcttctccg tgtaaataaa gcttataatc
     8281 tgtaaaattt tctataacat gagcaaaagt atgaccataa tttaaaagca ttctaagcct
     8341 tgattctttt tcatcttgtt caacaaccct tgatttaagc tctatgcttt ttgctataat
     8401 ctgagtaaaa atttcattct cacaagtagc atttaagaaa cttttttcat caattttttc
     8461 tataaaatca agtatactat aatcaaacat tgctgccatt ttaataaatt cagccatgcc
     8521 tgcagcaagt tctctagagc tcaaagtctt taaaaaaaaa ctctcacaat atacagcttt
     8581 aggttgataa aaagtgccaa taagattttt accaaaatta ttattaacac ctgtttttcc
     8641 acctactgct gcatcaacac aagctaaaag tgtagtagga atatttataa aatcaatacc
     8701 tctttgataa atactagcag caaatccgcc catatcacta atcacgccac caccaaaact
     8761 tataagtacg ctttttctat ccaatttaga attaaacatt tggtttaaaa tttcttccat
     8821 ggtgcttaaa tttttatatt cttcaccatc tttcacagta gcaataaaaa tttcttttgc
     8881 cttaatttta gaaagtaatg ttttcaaatg aagacctgaa atcttaggat ttgaaagtat
     8941 aaaaacctta ctatcaaatt ctaattcttc aagttcatca atataaacct tataagcatt
     9001 ttcttttaac ttaacttcta cttgcattga actactcttt ttgcatttat tttatcacat
     9061 ttaattaatt atttattcta ctggtatgaa aagttggtaa ttttgtctca ttttgtaata
     9121 atgcctattt aaatttgtac ttaaatttct ggcaaaatct ctatttagta attctttttg
     9181 aaaactcaca aattgtaaca aatcttcgcg atattgcaaa tttaaaagag ggttttcatc
     9241 atttttatta ataatttgta tatttttatc ataaagctta gataaacttc taaaatactc
     9301 ctccatatct gtagtatttt gagaatttgg attataataa tataaaataa ctccaaaatc
     9361 aagctgttta cttaaatcag taatgacatt tgcattgttt tcaagttcac tctcatcagc
     9421 acttaaaata atcgcttctt taagctcatc aaaagaagct tcacccacct tcataatagg
     9481 aatttttaaa tcaaaaaaag cttgtttttc tttctcaaaa ttttttatat cggttacaac
     9541 taatcctata tcattatttt gcaaccacat ggaaatttgt ttaaaatccg tgttgaaata
     9601 atcaaaaaac acaccttctt tatcctcaga aagttttttt aatttttcat acattacccc
     9661 taatttagga ttgataacat gtataaaaaa tctttttgca ttgctttttt gaattaattt
     9721 taaagtagta tcaagcactc tttcttgtat attttgattc atatttttca tatcaattaa
     9781 agcaaaaaca ttacttccaa aaggcatagg aaattgccct gctttgcctc ttatattatg
     9841 aaaaatactt tgtaaaacaa caggatcccc aacgatcaaa atgctatcat ttggctctag
     9901 aacaaaagat ggttttacaa aataaatttt agaatttcta taaataagga ctatgcgcca
     9961 ccttttttgt tgtattgaac ttatgtgcct ataagcaaaa atagaccctg ctggaatttt
    10021 tacttccata atctccccaa ctccaagtcc tatatactga gctgttaaag caatatctgg
    10081 taaaaaatcc ataaatctac ggcttaaagt cattctagca tcagctaaat ttgcatgagt
    10141 atcattaaca cttaaccccc aaaaatccat tatttctatt tctaaatttg gatttaaaga
    10201 acgcaaagcc tcataacttt ttttagtttc aaattcatct tgcatataaa taaaagcctg
    10261 tttaaaatcc ttactcataa tattttcaag acgcgctgtg cttgtaggat caaaataatg
    10321 caagtcaata tactcactag aaatatttaa gttatttttt tcactatttt gacacactac
    10381 tgtaaaaaag taacctaagc ctttttcaaa acaaagcctt tctaagaaat gctttgctaa
    10441 aataccatct attataatta aaatattatt cattttaaac tccaaaaagg aaattataac
    10501 aaatggaatt taaattaaag cataaagatg gaatggcaag ggtttgtgaa atcactaccg
    10561 cacacagcac ttttttaacc cctgttttta tgcctgttgg cacagtagga gcggttaaaa
    10621 gtcttgatgc taatgatatg aaaaatgagc ttgatgcaaa aattatttta gcaaatacct
    10681 atcacatgta cttgcgtcca acttccaaag tagtaaaaga ttttggaggt ttacatggat
    10741 ttacgaaatt tgatagaagt tttttaaccg atagtggtgg ttttcaagct ttttctttaa
    10801 gtaaaaattc caaacatttt aatgaaggta tagaatttaa aagtcacatt gatggaagtc
    10861 gtcatctttt tactccaaaa agtgttttag atacccaata tgattttaac tctgatatta
    10921 tgatgatttt agatgattta gtagccctac ctgcaaccaa agaaagggtt aaaatttctg
    10981 ttgatcgcac tatactttgg gcaaaagaag ctattgctta tcataaaaat atgcaaaata
    11041 aaggtatagg tatagggcaa aatatttttg gtattatcca aggtggcaca gattatgaag
    11101 aaagaaagcg ttgtgcttta agtttaaacg aaatgccatt tgatggttta gctataggtg
    11161 ggcttagcgt gggcgaagaa aacgccttga tgtacgaaac agtccaaaac ttaaaccctt
    11221 atctagatga aaatcgtcca agatatttaa tgggcgtagg aacgcctgaa gatttagtag
    11281 aaaatgttga gcgaggagta gatatgtttg actgtgtgat gccaactaga aatgcaagaa
    11341 atggaacatt tttcacaagt tttggaaaat ttaatatcaa aaaagcagaa tttatcaacg
    11401 atcatgaagt tatagattct acttgctcat gttatacttg tcgtaatttt tcaaggggtt
    11461 atttaaacca tctttttaaa gctaaagaac ttactttttt tcgtttggca agtctgcaca
    11521 atctacatta ttatcttgaa cttgcaagaa agatgcgtga agcaattttg aacaattctt
    11581 ttacgcaatt taaaagaaat ttttatcact taagaggcaa ataaaatgct agaactacac
    11641 gaaaatctaa aaaaaatcct acaagcaaag aatttagaaa ctttttatag tgaaatttat
    11701 gga
//
LOCUS       DARGEM010000050        11446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.050, whole genome shotgun sequence.
ACCESSION   DARGEM010000050 DARGEM010000000
VERSION     DARGEM010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.050"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1054
                     /locus_tag="SFZ78_000980"
     CDS             <1..1054
                     /locus_tag="SFZ78_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211862.1"
                     /translation="SETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSNNK
                     INYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKESAF
                     NKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAPSG
                     TSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDFSK
                     NNRLIIDTQDVKSEVVNNFENFTFILSNKIKNPILTIEKLINLPSNGSMEILTKNKPT
                     KGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNVNF
                     SFEVSDDAKIIYINIL"
     gene            1066..2508
                     /locus_tag="SFZ78_000981"
     CDS             1066..2508
                     /locus_tag="SFZ78_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEG8211863.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEVII
                     QQSITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKF
                     RTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFG
                     VVQNSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVNDLVINTAVNTK
                     VGGIIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIE
                     KLITSGNDSKTGGFTGKVGNLKINNAYLFL"
     gene            2664..3702
                     /locus_tag="SFZ78_000982"
                     /pseudo
     CDS             2664..3702
                     /locus_tag="SFZ78_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3712..5228
                     /locus_tag="SFZ78_000983"
                     /pseudo
     CDS             3712..5228
                     /locus_tag="SFZ78_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            5247..5390
                     /locus_tag="SFZ78_000984"
     CDS             5247..5390
                     /locus_tag="SFZ78_000984"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211864.1"
                     /translation="MDAMGIQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYASLE
                     KYF"
     gene            5893..7405
                     /locus_tag="SFZ78_000985"
     rRNA            5893..7405
                     /locus_tag="SFZ78_000985"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            7508..7583
                     /locus_tag="SFZ78_000986"
     tRNA            7508..7583
                     /locus_tag="SFZ78_000986"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7541..7543,aa:Ala,seq:tgc)
     gene            7592..7668
                     /locus_tag="SFZ78_000987"
     tRNA            7592..7668
                     /locus_tag="SFZ78_000987"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7626..7628,aa:Ile,seq:gat)
     gene            8203..11109
                     /locus_tag="SFZ78_000988"
     rRNA            8203..11109
                     /locus_tag="SFZ78_000988"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            11345..>11446
                     /gene="rrf"
                     /locus_tag="SFZ78_000989"
     rRNA            11345..>11446
                     /gene="rrf"
                     /locus_tag="SFZ78_000989"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         3987 a         1717 c         2433 g         3309 t
ORIGIN      
        1 aagtgaaact acgctagatg gtatagacta tatcgctgat gaatcaaaca ataatgaagt
       61 aaattttgaa aatattaaat catctaaaaa tttaagtttg atgatcaatg ctaaaaatgt
      121 ttcaaataat aaaataaatt ataatctcat tcagagttta accgaagcga gttctttagg
      181 aaagggctca aaaattattt taaaagcaac tcaaaatgca aacaacaatc ttataaagct
      241 taaagattgt tcttcggctg ccgtggaaag ttcgtgcatc ataaaagcag ataaagaaag
      301 tgcttttaat aaaatcatca tcaacaacac agtttttagt actgcctcag ataaaagaca
      361 aggttatgtg gggttgatag ctggagtgtc tgcaaattct catgataata tcatggagct
      421 tgttaattta aatatagatg agtataaaaa tcaagatgct atatttttag ctccatctgg
      481 aacttcggat atttcaaatt ttaaatctta taacaatact ttatatttag gtggagagtt
      541 aaatttcttt aaagatgtaa atatcgattt gctttctggt tctgtttttc atgaagtaaa
      601 taaaaaaggc aaaataatca ctcaaattct accgcatcaa gaagattttt ctaaaaataa
      661 tcgtttgatt atagatactc aagatgtcaa atcagaagtg gtaaataact ttgaaaattt
      721 tacttttatt ttatcaaata aaataaaaaa tcctatcttg actatagaaa aacttataaa
      781 tcttccttca aatggaagta tggaaattct tactaaaaat aaaccaacaa aaggaaaata
      841 tattctcata caaagtgatg ttggaattta tgatggtgac aatagattgt taaatcaaca
      901 agaattagaa aatttgttag aaaaaatgaa aaataataaa aataaattta attacaacaa
      961 gatagaaaag ttggctaaaa gtacattgaa aaatgtaaat tttagctttg aagtttcaga
     1021 tgatgcaaaa ataatttata tcaacatact ttaaaggaga gtaacatgaa aaagatgagt
     1081 aaacatatag ttttatcatt tgcggtgagt tctttgctct tttctcaagc ttatgctttg
     1141 ccacaaggag gtaaattcac tcatggtaca agtgggacta tccatacctc tggcaatact
     1201 gtaacgatta caggaaaagg acaaaatcat gttatccaat ggggtggcgg ttttaatata
     1261 ggacaaaatg aaagtgtaaa ttttaacggc aaaaatcaaa actacctaaa cattgcttat
     1321 caaaaagatg cttctaagat agacggagct ttaaatagag ggaataacaa tatcttttta
     1381 gttaatccta tgggagtttt gattggcaaa acaggaacta ttactgcggg aaaatttgta
     1441 gctagcacaa cagctttaag cgatgataat gtcaaaactt ttttagagaa aggagctagt
     1501 ttctctccgg catttgatgt aagcaaacaa ggaaatatta taaatcttgg aaagatcaat
     1561 gcagataata ttgttttaat aggaaataag gttgaaatca ataaaggaaa aattactttg
     1621 gatgtattaa aacttgaagg taataaagtt tatgttgatg ctggagtggt aaaagataca
     1681 aaaaatatcg tagccaaagc agagcaagaa gttatcattc aacaaagcat aacaagtttt
     1741 gaagaaaatg gagctttatt gggtaattct agtagtaaat ttagttttga tgatagtagt
     1801 aaagttaaaa actggactaa atatggaagt attgcggatg caacagaatg gaataaattt
     1861 gctgattttt ggaatgtaaa taaagaaaaa tttagaacag cttttgatca ttttcgtttg
     1921 attgatgata ttgattttag tggcgtgaaa acatacatag taggtgataa tacaagcaat
     1981 gcttttgcta aatctttcga tggttctggt tatgctttaa aaaatgttaa tattaattca
     2041 tcaaatcaat atgtaggaat ttttggagtt gttcaaaata gctatataag aaaccttaat
     2101 attcaaggat tgaaaattgc ttcaactggt tatgatgctt atgttggagg tatagtaggg
     2161 caaaatattg caaacagtta tacgggtttt gaaaatgtga ctgttaatga tctcgttatt
     2221 aatacagctg taaatactaa agttggcgga ataataggct ggggaaatgg tagtggaggg
     2281 aataacacta tcaattttac aaatgttgct attaataata taagtatagt agcaaaagaa
     2341 ggttcttatg tgggtggcat aggcagacaa attgatggtg gtaattttaa taatgttgtg
     2401 gttaatgaca tagaaaaact tataacttct gggaatgata gtaaaacagg aggatttact
     2461 ggaaaagttg gaaatttaaa gattaataat gcttacttat ttttataaaa atggagcaat
     2521 tttgagcgct ggaaactata aaacacaagc tggaaaagtt attggtgatc ctggattagt
     2581 gtaaataata attttagtaa tatttatgtt tatcataatt tagaaaatgg ttacattgat
     2641 gaaggacaga attttttaag tctgtgcaat ataataatga agtaacagaa aaaaaagatt
     2701 ttgatagtgc tgtaagaaag aaatttaacg atataaaata tcttgataat aattcttatg
     2761 cttttgctga ttcttttacc aaggtaacag atgctgtgaa attatccaaa gacgactttg
     2821 accctaaatt gcttcaaaga attttagatg atttgatgaa tggaaaatac acttatgatt
     2881 ttgataccaa aacttggatt tacgcagata gcaagggtgt ggcaggggaa aatgaagcca
     2941 gtgagatcac tcaaagttta aatttcttaa atacatttaa agatactgga gtagaacaag
     3001 aatttttaaa gttatggcaa ggttcgcaag aacaaagtta taaaaattat accaatcttt
     3061 atgaaaaatg gacgcaaaag aaaactgcta tggataaaat caaaaccggc aaaggttgtt
     3121 tcgctagttt taaagaagaa ttacaaaaat accaagaagc cttagctcaa cttgacaaag
     3181 aaaataaaaa ctatgaaaaa atcaaagaat caggcttagt tagcgatgaa acgcttagag
     3241 ttatgtatgc aaaactttta gaacaaaaag aagctcttga aaagcagttt gcggatctta
     3301 gtggaaatga aggatttcac tataagcttg aaaatgagat tctaaattct caaggttttg
     3361 ctataaatgg aagcgatgta gatggtaaag tgtacactgg aaaatataat tttgaaggaa
     3421 aattagcctc attgccagaa aaatcaaata tatctatcta tgagccagat aaacaaaaaa
     3481 aagagggagg gggtgaagat ccagacaaac cttctgtatt gccgcctgaa attcctgaaa
     3541 aggttgtaga agctcctata aaaattcaaa ctaaagtaga cacaaaaaaa agaagatgat
     3601 gatcaagtgg acataggaga agcagatgct agaagtagtg gtttgcgttg tattgtaagt
     3661 gataatttta agacaatgaa catttgtgta aatgcaaaat aggaaataaa aatgagaaat
     3721 ttaatcttat tgcaagtatt ttcacatgct gaagagctaa ataataataa aataagagag
     3781 cttatagaaa gctcttctga agcaaatgga ctacaaaata aaaattaaaa aatacattaa
     3841 aaaatcaaaa aagccctgta aattttaaag agcaaaatac tacaaatatt gcaaatttac
     3901 aaactgatca aaatgaagct aaggtttttg taagagagta tgttttgcat atcgataata
     3961 aagatttgac atttaaaaaa ttaagaatta gcgaaaaata aattcaagat gcaatagctg
     4021 aatatcgcaa ccaagaatta agcttacaaa ttttaaaaga tataacaaac attatagctt
     4081 attattgtca attaagtagc catccttcgg caactgctta tataccaccg caagatttaa
     4141 gttctaacaa agtgcaaatt aacatagctt ttggaacttt taggaaaagt aatcattaaa
     4201 aacaacttag gtgtcagaga ttatgcttta gagagtaaat tgaacaaaaa tcttaaaggg
     4261 aaagttatca caactaaaaa tgtggaaaat gaaatttata aaatcaatga aatatacgga
     4321 atccaaacca atgctaattt acaatcaggt gatggttgtg gagaaagcga tgttattata
     4381 gaagtaaaca aaggcgagat agtgtaactt taactttata ttctaacaac tatgggacta
     4441 aagaaacagg tcgttttaga gcaggaatga gtcaaagttt aaacaatata gcaagataag
     4501 gggataactt aaatttttat cttcaagata atgataaaaa tcaaacagat tatgggatta
     4561 attatagtac ttttataggg aatttaaaaa ttactctatt tgcaactcaa ggacattata
     4621 ttcctggcag aatttataga aatcttagtt tttataggga ctctatgaat gttggagtaa
     4681 atttttctta tcctgtgttt ttatatactg agtattcttt atatcttgtt tcgggtttta
     4741 ctcataaaaa gattaaagat tattatcttg atggtttagt aagcaatgaa aaagcgagaa
     4801 atagtgtaaa tttgggcata gaaagaactt atagaggttt ggagaataat gtcctaagtt
     4861 atactttaaa ttttatatat ggtaatgttg aaaatgatgg tgatttttct ggatttaatg
     4921 gagtaaattt aggaaatttt ggaaaaatga atttaaattt aagcaacaaa tatcaattct
     4981 aagaacgctt aactcacatt tttcaactta attatcaaaa agttatcagc gatgctgttt
     5041 tagatagtag tgaatccgta tctttaggta gaccttgtgg tatatgtgtt tgtttagaag
     5101 gtgagggaag tgcggataat gttgtttctg gcgccttggg aataagattt caaacacctt
     5161 tagaagggct ttactcgact cctttttatg atatagggta ttcttggtat gaaaataaaa
     5221 aatattaaag tgaaaatcat tatcttatgg atgcaatggg tatacaaata ctctatacaa
     5281 gaagtgctaa tttttatgta aaaatggatg ctgcaagagc tgttcatcgg tttaaacacg
     5341 atggagaaca tcgagcaaga gtttatgcaa gcctagaaaa atacttttaa ctttggggtg
     5401 attggaaaat cccccccccc atttttaaac ccaccaaata cttatataaa tacttacaca
     5461 aatatttata ctatttaatc ctttgtttaa tacactttta agtttaattg gttatacttt
     5521 catttccttt ttttgaaaaa aggacttaaa atcttttaaa ttataaagtt tcactagctt
     5581 agtagatttt ataaattaac tcttttggtt tttgtcttat aaactaaaag cttttttata
     5641 aatcttgttt tttaatttaa aaacttttct tttaaaaatg attttttgtt ttgttctttt
     5701 aacttagtat tgttattcaa atcttattag tcaatctttg aaatctaaat aagtgatcga
     5761 ttgagccaga aagatttagg cataagtaat tatgtaaaat ctattcaatc taataattaa
     5821 aaagattaaa agtttttctt ttaatctttc ataacttttt ctttgaagaa aaagattaaa
     5881 ctatctataa tttttatgga gagtttgatc ctggctcaga gtgaacgctg gcggcgtgcc
     5941 taatacatgc aagtcgaacg atgaagcttc tagcttgcta gaagtggatt agtggcgcac
     6001 gggtgagtaa ggtatagtta atctgcccta cacaagagga caacagttgg aaacgactgc
     6061 taatactcta tactcctgct taacacaagt tgagtaggga aagtttttcg gtgtaggatg
     6121 agactatata gtatcagcta gttggtaagg taatggctta ccaaggctat gacgcttaac
     6181 tggtctgaga ggatgatcag tcacactgga actgagacac ggtccagact cctacgggag
     6241 gcagcagtag ggaatattgc gcaatggggg aaaccctgac gcagcaacgc cgcgtggagg
     6301 atgacacttt tcggagcgta aactcctttt cttagggaag aattctgacg gtacctaagg
     6361 aataagcacc ggctaactcc gtgccagcag ccgcggtaat acggagggtg caagcgttac
     6421 tcggaatcac tgggcgtaaa gggcgcgtag gcggattatc aagtctcttg tgaaatctaa
     6481 tggcttaacc attaaactgc ttgggaaact gatagtctag agtgagggag aggcagatgg
     6541 aattggtggt gtaggggtaa aatccgtaga tatcaccaag aatacccatt gcgaaggcga
     6601 tctgctggaa ctcaactgac gctaaggcgc gaaagcgtgg ggagcaaaca ggattagata
     6661 ccctggtagt ccacgcccta aacgatgtac actagttgtt ggggtgctag tcatctcagt
     6721 aatgcagcta acgcattaag tgtaccgcct ggggagtacg gtcgcaagat taaaactcaa
     6781 aggaatagac ggggacccgc acaagcggtg gagcatgtgg tttaattcga agatacgcga
     6841 agaaccttac ctgggcttga tatcctaaga accttttaga gataagaggg tgctagcttg
     6901 ctagaactta gagacaggtg ctgcacggct gtcgtcagct cgtgtcgtga gatgttgggt
     6961 taagtcccgc aacgagcgca acccacgtat ttagttgcta acggttcggc cgagcactct
     7021 aaatagactg ccttcgtaag gaggaggaag gtgtggacga cgtcaagtca tcatggccct
     7081 tatgcccagg gcgacacacg tgctacaatg gcatatacaa tgagacgcaa taccgcgagg
     7141 tggagcaaat ctataaaata tgtcccagtt cggattgttc tctgcaactc gagagcatga
     7201 agccggaatc gctagtaatc gtagatcagc catgctacgg tgaatacgtt cccgggtctt
     7261 gtactcaccg cccgtcacac catgggagtt gatttcactc gaagccggaa tactaaacta
     7321 gttaccgtcc acagtggaat cagcgactgg ggtgaagtcg taacaaggta accgtaggag
     7381 aacctgcggt tggatcacct cctttctaga gtacaaagta ataagtctca caactattac
     7441 ttcaatatat aaactcaatt gattcttgtt tagatttcaa agattgatga taaagctaat
     7501 tgtttatggg gaattagctc agctgggaga gcgcctgctt tgcacgcagg aggtcagcgg
     7561 ttcgatcccg ctattctcca ccatttatta agggcctata gctcagctgg ttagagtgca
     7621 cccctgataa gggtgaggtc acaagttcaa gtcttgttag gcccaccata aaaaagattt
     7681 gaataaagaa gctttaaaat ctaaagcaag tatataaaat agattaaata taaaatataa
     7741 actctatact tagatttatt tttatcttta actataaaag aatatacttt aatagatata
     7801 agtagcatat acattatgca tttatattta taatgattat gttaatatat atacttcctt
     7861 taggttttaa acctaaatgt tctttttaat tatcattgtt aagagtcaca agcaagtttt
     7921 aataaaaaca attttacagg acttgttaaa ggataaaacc tatttatctt ttctttagtt
     7981 taacttaact tttagctgtc ttctcttcta tgaataaaga gaatattaga tttaaggatt
     8041 ataaattaaa gacaagtttc aaactcactg cttagttgag actaaatcat ttagttttat
     8101 attaagtgtt tgaatgcttt ccgtcttaag ataaagaagt cttatcataa aaactttaac
     8161 aaggaagtga tgcgttttag aatcaataat aaaaggtaaa aaaggtaagc tactaagagc
     8221 gaatggtgga tgccttgact ggtaaaggcg atgaaggacg tactagactg cgataagcta
     8281 cggggagctg tcaagaagct ttgatccgta gatttccgaa tggggcaacc caatgtatag
     8341 agatatacat tacctatata ggagcgaacg aggggaattg aaacatctta gtaccctcag
     8401 gaaaagaaat caatagagat tgcgtcagta gcggcgagcg aaagcgcaag agggcaaacc
     8461 cagtgcttgc actgggggtt gtaggactgc aatgtgcaag aggtaagttt agcagaacat
     8521 tctggaaagt ataaccatag agggtgatag tcccgtatgc gaaaaacaaa ccttagctag
     8581 cagtatcctg agtagggcgg gacacgagga atcctgtctg aatccgggtc gaccacgatc
     8641 caaccctaaa tactaatacc agatcgatag tgcacaagta ccgtgaggga aaggtgaaaa
     8701 gaactgaggt gatcagagtg aaatagaacc tgaaaccatt tgcttacaat cattcagagc
     8761 cctatgtagc aatacagggt gatggactgc cttttgcata atgagcctgc gagttgtggt
     8821 gtctggcaag gttaagcaaa cgcgaagccg tagcgaaagc gagtctgaat agggcgctta
     8881 gtcagatgct gcagacccga aacgaagtga tctatccatg agcaagttga agctagtgta
     8941 agaactagtg gaggactgaa cccataggcg ttgaaaagcc ccgggatgac ttgtggatag
     9001 gggtgaaagg ccaatcaaac ttcgtgatag ctggttctct ccgaaatata tttaggtata
     9061 gcgttgtgtc gtaatataag ggggtagagc actgaatggg ctagggcata caccaatgta
     9121 ccaaacccta tcaaactccg aataccttat atgtaatcac agcagtcagg cggcgagtga
     9181 taaaatccgt cgtcaagagg gaaacaaccc agactaccag ctaaggtccc taaatcttac
     9241 ttaagtggaa aacgatgtga agttacttaa acaaccagga ggttggctta gaagcagcca
     9301 tcctttaaag aaagcgtaat agctcactgg tctagtgatt ttgcgcggaa aatataacgg
     9361 ggctaaagta agtaccgaag ctgtagactt agtttactaa gtggtaggag agcgttctat
     9421 ttgcgtcgaa ggtataccgg taaggagtgc tggagcgaat agaagtgagc atgcaggcat
     9481 gagtagcgat aattaatgtg agaatcatta acgccgtaaa cccaaggttt cctacgcgat
     9541 gctcgtcatc gtagggttag tcgggtccta agtcgagtcc gaaaggggta gacgatggca
     9601 aattggttaa tattccaata ccaacattag tgtgcgatgg aaggacgctt agggctaagg
     9661 gggctagcgg atggaagtgc tagtctaagg tcgtaggagg ttgtacaggc aaatccgtat
     9721 aacaatactc cgagaactga aaggcttttt gaagtcttcg gatggataga agaacccctg
     9781 atgccgtcga gccaagaaaa gtttctaagt ttagctaatg ttgcccgtac cgtaaaccga
     9841 cacaggtggg tgggatgagt attctaaggc gcgtggaaga actctcttta aggaactctg
     9901 caaaatagca ccgtatcttc ggtataaggt gtggttagct ttgtattagg atttactccg
     9961 aaagcaagga aacttacaac aaagagtccc tcccgactgt ttaccaaaaa cacagcactc
    10021 tgctaactcg taagaggatg tatagggtgt gacgcctgcc cggtgctcga aggttaattg
    10081 atggggttag cattagcgaa gctcttgatc gaagcccgag taaacggcgg ccgtaactat
    10141 aacggtccta aggtagcgaa attccttgtc ggttaaatac cgacctgcat gaatggcgta
    10201 acgagatggg agctgtctca aagagggatc cagtgaaatt gtagtggagg tgaaaattcc
    10261 tcctacccgc ggcaagacgg aaagaccccg tggaccttta ctacagcttg acactgctac
    10321 ttggataaga atgtgcagga taggtgggag gctttgagta tatgacgcca gttgtatatg
    10381 agccattgtt gagataccac tctttcttat ttgggtagct aaccagcttg agttatcctc
    10441 aagtgggaca atgtctggtg ggtagtttga ctggggcggt cgcctcccaa ataataacgg
    10501 aggcttacaa aggttggctc agaacggttg gaaatcgttc gtagagtata aaggtataag
    10561 ccagcttaac tgcaagacat acaagtcaag cagagacgaa agtcggtctt agtgatccgg
    10621 tggttctgtg tggaagggcc atcgctcaaa ggataaaagg taccccgggg ataacaggct
    10681 gatctccccc aagagctcac atcgacgggg aggtttggca cctcgatgtc ggctcatcgc
    10741 atcctggggc tggagcaggt cccaagggta tggctgttcg ccatttaaag cggtacgcga
    10801 gctgggttca gaacgtcgtg agacagttcg gtccctatct gccgtgggcg taagaagatt
    10861 gaagagattt gaccctagta cgagaggacc gggttgaaca aaccactggt gtagctgttg
    10921 ttctgccaag agcatcgcag cgtagctaag tttggaaagg ataaacgctg aaagcatcta
    10981 agcgtgaagc caactctaag atgaatcttc tctaagctct ctagaagact actagtttga
    11041 taggctgggt gtgtaatgga tgaaagtcct ttagctgacc agtactaata gagcgtttgg
    11101 cttatcttta ataaagcatc acttccttgt taaggttttt aagaagactt tgaatataga
    11161 taatatttag agtttaatag aaatctttca agtaaagttt gtattagaac ttgctcttaa
    11221 cattgttttt taagtattct atataaaaac ttatcaaaga taaaagataa gaaaagaaga
    11281 aagagaataa aagattaagt tttattctta aattcaattt ttcaaagaat atttaaataa
    11341 caatgtccgt gattatacag atgtggaaac gccttgctcc atcccgaacc aagaagctaa
    11401 gcacatcgtg ggtgatgata ctacgcctta ctggcagggg gaaagt
//
LOCUS       DARGEM010000051        11293 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.051, whole genome shotgun sequence.
ACCESSION   DARGEM010000051 DARGEM010000000
VERSION     DARGEM010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11293
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.051"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(31..1068)
                     /locus_tag="SFZ78_000990"
     CDS             complement(31..1068)
                     /locus_tag="SFZ78_000990"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG8211865.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1122..2693)
                     /gene="recJ"
                     /locus_tag="SFZ78_000991"
     CDS             complement(1122..2693)
                     /gene="recJ"
                     /locus_tag="SFZ78_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG8211866.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2680..4311)
                     /locus_tag="SFZ78_000992"
     CDS             complement(2680..4311)
                     /locus_tag="SFZ78_000992"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG8211867.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4431..5054
                     /locus_tag="SFZ78_000993"
     CDS             4431..5054
                     /locus_tag="SFZ78_000993"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG8211868.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFETLPQEHKFIFEHCLHKDIE"
     gene            5174..6559
                     /locus_tag="SFZ78_000994"
     CDS             5174..6559
                     /locus_tag="SFZ78_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8211869.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFVLQYLANFPDAEEASNILWYSETKHWFAFVSSVFVTFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEECEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6598..8967)
                     /locus_tag="SFZ78_000995"
     CDS             complement(6598..8967)
                     /locus_tag="SFZ78_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG8211870.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(8983..10311)
                     /locus_tag="SFZ78_000996"
     CDS             complement(8983..10311)
                     /locus_tag="SFZ78_000996"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8211871.1"
                     /translation="MVERYSREIMAKKWDMQAKYDTWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIVRIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVVSYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10389..11285
                     /locus_tag="SFZ78_000997"
     CDS             10389..11285
                     /locus_tag="SFZ78_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8211872.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLFYKNHKILGDPLYGLEKKDIEKILDDKMDIEERIKLSGAKRLCLHSYRLKF
                     NYNGENFDIFSKKGMEKILAAF"
BASE COUNT         3742 a         2125 c         1503 g         3923 t
ORIGIN      
        1 ttccctaagt ttagaaatat ttaaaaaatt ttaatatttt aaaaaatact cttgaatttt
       61 tttaggatca cttgtttttg taagtgctaa tataagcaaa actcttgctt tttgaggatt
      121 taaatcttca gcactaataa aacctaattt ttcatctgaa tcactcacag caacacaacc
      181 tgctacaacc cttgaactta caacaacctt aagccctttt tttaaaagct cttttaaaac
      241 atctttttga tttttgtgta tacttcctgc tccacttcct gcaacaacta tgcccttagt
      301 tccatgttca aataaagctt ttgcagcgac accactacca tcatttgaat agctataaag
      361 aatatctact tttggcaaac ttgtgagttt gcttacatca aaaggagcgt tttttgtgtg
      421 agctttagta acattattat agaaaaagac tttaccatct actatataac ccaaatcccc
      481 aaaatcagga gaagagaaag catcaacatt taaactatga gtttttacta cgcctctagc
      541 gcttaaaatt ttatcattta tagctaccat aacaccctta ttcttagctt ctttattggc
      601 aactaatgcc actgcattat aaagattttt cggaccatcc gcacttatag cagttgatgg
      661 acgcatagcg ccaactagaa ctacgggctt atcactttta atggttaaat ttaaaaaata
      721 agcagtttct tccatagtat cagtaccatg agttatcacc acaccgtcta tcccctcagc
      781 aaaaagctta gcaatttttt tagcaagcct taaccaaatt tcatcacaca tatttgaact
      841 atcaatattt gctatttgct cccaactaat atctgctaaa tctctaattt gcggaactgc
      901 tttaattaat acatctatat caatggctcc ggccgtatat cctgttgtag caatagtgct
      961 atcaatgaag cctgctatcg ttccgcctgt tcctaaaata gcaatccttg atttagcttt
     1021 tttcatacat actcctataa aaagacaaca tataaataat tttttaatct cttgtatatt
     1081 aattttttaa tgttattaat gcaaattata agtaaaaatt tttataaaat ctctttaaca
     1141 acaaactgtg gagttaccat tcccctaaat tcattcttag aaatacttcc aagcaaagaa
     1201 atattttgat tcaattctgg ctctttatca aaattaaaaa ataaagcttc tatggtttta
     1261 ttttccttag ttaaaacaag ctttaagtgt ttttcatctt tacctagaag ttttttattt
     1321 tttacacaaa gattttctaa aacaaaaaaa ggtcgtggat ttttatgtcc aaaaggttca
     1381 aaagattcta aaatttcaag catttcaaaa tcaatttcgc taggttctaa gattcctaaa
     1441 atttcatccg tatccaaaaa ttcactttca gaaatttgcg aacattcttt tttgatttta
     1501 tttttaaatt gttcaaaatt ttcagagttt aaactgattc cagcagcacc tttatgacca
     1561 ccataattgc ttaatataga atttgtctta gaaattaaag ccaaaatatc aatcttgcca
     1621 acacttcttg cactaccttt taagtgttct tcattttgag aaaatacaaa agcaggttta
     1681 ttaaaatgtt tagctaaacg acttgccaca atccctaaaa caccttcatg ccaatttaaa
     1741 cccgatacca caatacaaga atcgttttca tcgatttgat ttaaactatc ttcaaaaagc
     1801 tgtttttctt catctttacg actttcatta aaactaacaa tttgctctag atattctaaa
     1861 gctttattaa aatctttagt gtgtaaaaat tcataagaaa tacttgcatc atccattctt
     1921 ccagcactat ttataagcgg agcaattaaa aatcctatat tatcaagagc aaatttatcc
     1981 ttttgataat aatgcttaat agccctaaaa gcagcccttt tagatttgtt aatatgatct
     2041 atgccacgcc ttactaaagc acgatttaaa tctctaagtt ccatcatatc tgcaacaatt
     2101 gcaatcgcca aaagttctaa aaatttacac atgtcatatt taagcttgca cacctctttt
     2161 aaagccgcta tcaaatacca tgcgacttga gctccacaaa tttcaatttc tggaaaatca
     2221 caatcttttt gctttggatt gataatggca aaagcatcag gtaaaatatc ttgaggcata
     2281 tgatgatcag tgataatcaa atctatattt ttttctttac agagtttggc tgcttcaaga
     2341 gcagctattc cattatctac tgttattatt aaatttacat caagttcgtt gatgatctca
     2401 gcatttaatc catatccatc tttaaaacga ttcggaattc ttataatata atcaaaacct
     2461 atatcatcga aaaattctgc cataataaca caagaaatga ttccatcaac atcataatct
     2521 cctactatag cgactttctc atttttttct acagcttctt tgatgcgatt agctgcttta
     2581 tatgcatcct ttaaacagca tggcaaaggc agatcacaaa gtttggtatg caaatctttt
     2641 tcaaagcgtg aagccaaaat ttttttaatt tcatttttat taattatctt catagtttat
     2701 agctgccttg ataaaactgc aaatcacagg attaacatgc tcaagtcttg atgtaaattc
     2761 tggatgaaac tgcacagcca agaaaaaagg atgacaatta agctcaactg cttcaatcaa
     2821 tcctttgctt tcaccactta caatcaaacc gtgtttttca aaatctgctc tatattttgg
     2881 atttgcttca tagcgatgac gatggcgttc ttttacactc tttacttcat tataaacctt
     2941 agccaaaagg gatttttcct tgatatcaca tttataagcc cctaaacgca tagttccacc
     3001 taaaggagtt tttgcagtac gaatttgttt ttctccattt gtatccataa attcatcaat
     3061 caaataaacc acaggatttt ggcatttttc attaaattca cttgaatttg catctttaag
     3121 ttttaataca tttctagcaa attccaccaa agcaagctgc atacctaaac aaattcctaa
     3181 aaaaggaatt ttattttctc ttgcgtattg aatggctttt atcttacctt ctacaccacg
     3241 atatccaaat cccccagcaa ccaaaattcc actcacatct ttaaatactt cagaactttc
     3301 catattttca agtttttcac tatctaccca ttttaactcc actttagtat ctagggctgc
     3361 acctgcgtgt ataatagctt cagtaaggct tttataactt tcttttaaat ccacatattt
     3421 gcctacaaaa gcgattttaa cttcattgct tggagctata actcttttta ccaaagagtc
     3481 ccaattttcc atattaggtt ttaaattttt caaatccaaa atttcagcaa tagggcttaa
     3541 aatatcttgc tttaaaaaat taagtggaat ttgataaata ctagccgcat caacactttc
     3601 tatcacgcaa tttttttcca ccccgcaaga aatagcaatt ttatctttta aatctctatc
     3661 aagagctttt tcactacgac aaataatcat atcaggacta atgcctatgc gccttaactc
     3721 gcctacacta tgttgagttg gctttgtttt taattcccct gcagccttaa taaaaggtac
     3781 tagagtaaga tgaatattca tagcattatt tttacccact tccaaacgca aagcacgaat
     3841 agcttctaaa aaaggcaagc cttctatatc cccaacagtt ccgcctattt caacgataag
     3901 tatatctttg ccttctcctg cttttttaat gcgatctttg atttctccta ctatatgagg
     3961 gataacttga atggttttgc caagatattc tccacgcctt tctttttcaa tcacactttg
     4021 ataaacccgt cctgtagtga agttattatc ttgagataaa ctctcatcca aaaaacgctc
     4081 ataatgcccc aaatcaagat ccgtttctgc tccatcatca gttacaaaaa cctctccatg
     4141 ctcaaaagga ctcatagtgc ctggatcaac attgatataa ggatcagctt ttaaaatact
     4201 cactttaagc cctgaatttt ttaaaagtgt tgcgatagaa gcagcggcta tccctttacc
     4261 caaagaactt aaaactccac ctgttacaaa aatatatttt gtttgtttca ttgataataa
     4321 gccttatttt tttatctaat tatagcttga taaaactttt tatttcatta gaattttaag
     4381 taaaaaatgc aagaattaca aaaaatattt ttatcaaaaa aggaataagc atgcaaatca
     4441 ctttactttt tcacactcca ttatctgttt gttctcatgc aacaagaact tgttggcaaa
     4501 gctttgaaaa aggcgattgc ggtggcgaaa aagataaaga acttatcgat cgcgtgggca
     4561 acaaattcaa acacgcttca accttagaac atctaaacta tactttttat atacaaggaa
     4621 tttcaagagc ttgcttacaa gaagtcgcaa gacaccgtca cactagtcct agtgtaaaaa
     4681 gcacgcgtta taccttaaaa gaacttcgca atgaaggtga gtttaaaata ggagattttg
     4741 aaaatgcaag ccgttatctt gtgctttgcg gtaatgaaga ggttgataac gcaagcatta
     4801 aagccttaga aaatttacgc actattttac aaaaaagcat tagtctagat atagccaaat
     4861 actgcttacc agaaagctat aaaaccgaac ttacactaac gattaatgca agaagtttac
     4921 aaaatttcat ttctttgcgt agttcaaaat cagctctttg ggagattaga aatttagcaa
     4981 atgctttatt tgaaacctta ccacaagaac acaaatttat atttgaacat tgcctacata
     5041 aagatataga ataaatcata ctaattttat cttatttaaa atatttttat gttaccattt
     5101 ataaaatcaa gctttatgca agtatatttt catatacctt gtgcttgatt atagtttctt
     5161 ataaggactt tttatggata aacaattttt tcaagatttt ctaatgcttt cacaagctca
     5221 tactatagct actcttgcta tgctttgtgt tgttttttac gcattaaaaa aaatgcggga
     5281 tataaaaatc aatttttctc ttcgcatgct atttgcgctt ttaatgggtt tggggtttgg
     5341 ttttgttttg caatatttgg caaattttcc agatgctgaa gaagcaagta atattctttg
     5401 gtatagtgaa acaaaacatt ggtttgcatt tgtaagttct gtttttgtaa cttttataaa
     5461 aatgctagtt gttcctcttg taagcatttg cattataaaa gtaattatag aaattgataa
     5521 aaatatcaaa atatcctcct tgcttggaat aagtcttttt tggatactct ttagcacagc
     5581 catagctgca accttgggta tatttttagg ttatagtttt gatttaggaa gtaattttgc
     5641 catacatgaa ggagataaac aaattcgcga aattcaaact ttttcaaata ttatactagg
     5701 gctaatacct agcaacatca ttacagctat taataaagaa aatattatag ctattgtcat
     5761 tttttccttt tttataggaa ttagtgctaa aaaaatttct aaaaaagaag agtgtgaaca
     5821 agcctttaaa agttttcata attttatcct aaccttttat aatattatga tgaacatgac
     5881 tgctacagtg attagattta tgccttatgc tgtagtttgt atgatggcta atgtgctttt
     5941 aagcaatggt tttgaagcta tcaaaacagc tggacttttt ataatgctta tttatatagc
     6001 tatgttaata atgttcgggg tgcatttttt acttcttgct tcacaagggc taaaccctat
     6061 aaaatatgca aaaaaagcat ttcctgtatg gttatttgca tttagctcaa gatcttcttt
     6121 gggcactttg cctatgacta cttcaacttt gcaaaataaa tttggagtta attcagctat
     6181 agctaatttt gtagcatcta taggtacaac aacaggactt aatggttgtg cgggatattt
     6241 tccagcttta gcggcagttt ttgtagcttt tgctacacat acacatattg attttacatt
     6301 tgctttaatg atagttttgg tagctgttat tggatccttg ggtatagctg gagtacctgg
     6361 aagtgcaact atggcagctt ctattatgct agcagggatt ggatttggta ataattttgt
     6421 catgttaagt ttgattttag ctatagatcc tattatagat atggcaagaa cagcaagtaa
     6481 tgtctcagga gctatgactt cggcactttg tactgcaaaa aatctaaaag ccctagataa
     6541 agaaatttac aattcttaat ctcttaaaac ccaatatttt tcattgggtt ttagtattta
     6601 ttggcaacct tcacattcta tgctacgatc tgcaacattg actttttcac tatcagggct
     6661 ttcgcttctt agataataag tagattttac tccaagctcc caagcgagtt gataaatttc
     6721 atttaaatat cccccacttg ctttatcaag cgataaaaag atatttaaac tctgcccttg
     6781 atcgatccat ttaccacgca cagcagcagc ctttacaaga attttttgat caagttcgta
     6841 ggctggagta tagtattgcc aagtatcaag gcttaaattt ggcacaacaa caggtatcat
     6901 accacttaaa ttttgttcaa accactttct tttgtaaaca ggttctatag tctgcgtagt
     6961 acccaccaaa atagaaatag aagaagtagg tgcaatggcc atcaaataac catttctcat
     7021 accatctttt ttaacttttt ctctaagttt aacccagtcg cattcacttt gatcaaataa
     7081 gccctctctt aaagttaaag ctttagcctt aggacttgct acatcaatag gaaaaatccc
     7141 cttgctccaa tttgatcctt caaaatcctc ataagaacct ttttcaagag ctaaatttga
     7201 actcgcatta atagcctcaa agctaatttg ttccataatc tcatcgattt tatttaaatg
     7261 ctcatcgctt ccccaataaa tcttagcttc agcaagcatt tgtgcctcac ccatgactcc
     7321 aagacctatg gcgcgagatt ttaaatttgt atcttttact tttctatgag gataaaaatt
     7381 taaatctatc acattatcaa gcatacgaat agcagttggc acaacacgct ctatatcttc
     7441 tttagtatac actttgctaa ggtttatact tgctagatta caaacggctg tttttccatc
     7501 atttttatat ttttctacta tataaacttt attaccatca atactatcta aagttgagat
     7561 ttttttggct ggtttttcat atcccccatc gatcacaact ttttgttctt catcaaaatg
     7621 aagttcatct ccattttcaa aaactacttt aatttgataa taatttggct cggtattttg
     7681 aaaaatttca gtacataaat ttgaacttct aataattcct acatgagcat ttggatttgc
     7741 tctgttagcg ctatccttaa aacataaaaa tggcaagcct gtttcaaaat aatttagcaa
     7801 aattttcttc caaagctctt tagcttctac gatttctttg gtaatgcttt catctttttc
     7861 atattcttca tagcgttttt caaaagcttc accatataaa tcacataaat ctgctgtatc
     7921 tgcaggatca aaaagagtcc atttatcatt agctcttact ctcttcataa aaagatcatt
     7981 gatccataaa gcagggaaaa gttcatgagc acggcgtctt tcttcacctg aatttttacg
     8041 caaatcaata aaatcactta tatccatgtg ccaaggttct atataaacag ctatagctcc
     8101 ttttctggtt cctagctgat ctactgccac ggcaatatca ttagtaattt tcaagaaagg
     8161 tataatccct cctgcggcat ttttatgccc atctatgctt ccacccatag cacgcacttt
     8221 agaccaatcc caacctatac cgccaccaaa tttagaaagc aaagccattt cttggtaaga
     8281 atcaaaaata ccttcaatat tatcaggggt tgatcctata taacaagaac taagctgatg
     8341 gcgcgttgtt cttgcattag ataaagtcgg agttgcaagc atgagttcaa atttagaaat
     8401 taaatcataa aatttcttcg cccattcttg aggattaaat tcattctgcg ctaaaaacat
     8461 cgcaatggcc ataaacattt gttgaggaag ttctataggc atacctttac tatctttaat
     8521 caagtatcta tcatataaag ttttaatacc aagataagta aattgcatat cgcgttcagg
     8581 tttaatataa gcatttaaat catctaaatc gtatttttct ttaagaccaa gtaagattct
     8641 tccttctttt tcgccctttt caaaatactc acgcaaatga ttatagcgat tcataccatt
     8701 aactttttta tataaatcaa ataaaaaaag tctagctgca acaaaggtcc aatttggaca
     8761 atcaatatct atcttatcta ctgcagtttt aattaaagtt ttttgaattt cttcagttga
     8821 aattccatca cgaaattgaa tctttgcatc gagttcaagt tcgcttaaat tcacaccttc
     8881 taaatctttt acagcatcag aggtgcattt tttgatctta gaaacatcca attcttctgt
     8941 acgaccattt cttttaataa ctttcattgc cttccttgct ttttatttaa atgttctttt
     9001 aaaaattaca tcaacatttt ttgtatagta gttataatcg aaacattttc ttacatcctc
     9061 ttcgctcaaa ctttttctta aatcttcatc gcttaaaagc gctaacaaaa acaaactttc
     9121 atttttttca ttgatagcag ccttaccatt ttgcaaatct gcccaaactt tcatagcgtt
     9181 tctttgaact attttataag cttcttcacg actaatgcct ttaaatggaa gctctaaaag
     9241 caccctccct gaaaatacaa gcccacctgt aagatttaaa tttttcatca tattttcagg
     9301 ataaactaaa agcttatcaa tcaaatttgt aagacgcata agcataaaat cagccgtgat
     9361 aaaagcatca ggcaaaataa atctttcaac actagaatga gatatatctc tttcatgcca
     9421 aagtgcaaca ttttctaaag ctggagttac aaaagatcta agcacacgac aaagccctgt
     9481 gatattttca cttaaaacag gatttctttt atgtggcata gctgaacttc ctttttgtcc
     9541 tacactaaaa tactcttcag cctcataaac ttcagttctt tgaaaatgtc ttatggctac
     9601 agcgatttgc tcacaacttg aagctaaaat tgcaatagca gaaataactt gagcataacg
     9661 atctctttgg atcacttgat ttgaaacagg ggcagcttta agacctaaat ttttacaaac
     9721 ttcttcttca aattctaaag gagcatgagc aaaatttccc attgcaccac tgatttttcc
     9781 atagcttacc acttcttttg catgttctaa aagctctttt gcatgcaaaa tttcatcata
     9841 ccaaatagct aacactaaac caaaagtgat aggctctcca tgaattccat gacttcttcc
     9901 taccattaag gtatttttat gctccaaagc acgctttttg atcacttcta aaagcaaaga
     9961 aacatcttct aaaataagct ccaaactctc ttttatctgt aaagcaacag ccgtatctat
    10021 acaatcagaa cttgtcattg cataatgcac aaaacgactc tcttctccca aactttcact
    10081 tacacttgta agaaaagcga taacatcgtg ttttgtggtt ttttctattt cgtctattct
    10141 tacaatatca aattttgcat ttttaagaat tttttcgcag tctgtgtcat taatgagacc
    10201 gagtttattc caagctttta cagcggctaa ttctactttt aaccacgtat cgtattttgc
    10261 ttgcatatcc cattttttag ccatgatttc tctgctatat ctttcaacca tctttgaaac
    10321 ctttttagct ataattttat attttaaaaa acagaaatta tatcaaatta tcctaagaaa
    10381 gttattaaat ggcttacata aaaataaaac tctcaaataa tggaaaaaag gcatttcaag
    10441 tccttatgga aaatttaaaa attagcataa atgaagcaca aaaactcata gacaaaaaaa
    10501 gacttttttg tgatggaatt ttagtagaag aaaagaatga aattttaaat ggtttagtag
    10561 agcttatagt ctatgaaaac aatcccaaag gagtagaaat tgtctttgaa aatgaagact
    10621 ttgccatact tgaaaaagaa agtgggatct taagtcatcc aaatggtaga cattgtaaat
    10681 acagtcttag tgatgaaatt tggcatcttt ggggaaaaga agcttgcgta gcacacagac
    10741 ttgataaaga aacgagcgga cttatacttg tagccaaaaa taaaaaagct caaattgatc
    10801 ttaaagcttt gtttgaaaaa aaactggttc aaaaagaata ccttgctcta gctaacggaa
    10861 aaatagaaga aaattttata attgataaag ccataaattt agccaaaaac tacgatgatg
    10921 taaaaacaag gatgcaaatt tgtaaggaag gaaaacaagc tatcactgag tttgaaattt
    10981 tagaatactt tcctaaaatc aacgctactc ttttactctg caaaccactc acaggcagac
    11041 aacaccaaat tagagtgcat ttattttata aaaaccacaa aattttaggc gatccactct
    11101 atggccttga aaaaaaagat atagaaaaaa ttttagatga caaaatggac atagaagaac
    11161 gcataaaact aagcggtgct aaacgcttgt gtttgcattc ttatcgttta aaatttaact
    11221 ataacggaga aaattttgat attttttcaa aaaagggtat ggaaaaaatt ttagcagcat
    11281 tttaaaataa agg
//
LOCUS       DARGEM010000052        11249 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.052, whole genome shotgun sequence.
ACCESSION   DARGEM010000052 DARGEM010000000
VERSION     DARGEM010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11249
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.052"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            43..258
                     /locus_tag="SFZ78_000998"
     CDS             43..258
                     /locus_tag="SFZ78_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG8211873.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            268..1365
                     /locus_tag="SFZ78_000999"
     CDS             268..1365
                     /locus_tag="SFZ78_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG8211874.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLRNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(1397..1993)
                     /locus_tag="SFZ78_001000"
     CDS             complement(1397..1993)
                     /locus_tag="SFZ78_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG8211875.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2076..4140)
                     /locus_tag="SFZ78_001001"
                     /pseudo
     CDS             complement(2076..4140)
                     /locus_tag="SFZ78_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(4283..5221)
                     /gene="accA"
                     /locus_tag="SFZ78_001002"
     CDS             complement(4283..5221)
                     /gene="accA"
                     /locus_tag="SFZ78_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEG8211876.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(5223..6437)
                     /locus_tag="SFZ78_001003"
     CDS             complement(5223..6437)
                     /locus_tag="SFZ78_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG8211877.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(6464..6697)
                     /gene="acpP"
                     /locus_tag="SFZ78_001004"
     CDS             complement(6464..6697)
                     /gene="acpP"
                     /locus_tag="SFZ78_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8211878.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            6807..7475
                     /gene="tenA"
                     /locus_tag="SFZ78_001005"
     CDS             6807..7475
                     /gene="tenA"
                     /locus_tag="SFZ78_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG8211879.1"
                     /translation="MMLFSNLIKENQKIWDAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(7499..8356)
                     /locus_tag="SFZ78_001006"
     CDS             complement(7499..8356)
                     /locus_tag="SFZ78_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG8211880.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLAKAKNTLDKGAKERIN
                     TFLAKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDTF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDASKIA"
     gene            complement(8360..9325)
                     /locus_tag="SFZ78_001007"
     CDS             complement(8360..9325)
                     /locus_tag="SFZ78_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG8211881.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKDCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGSDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEWHKDLVKMIKAAQEAAVKE"
     gene            complement(9322..11157)
                     /locus_tag="SFZ78_001008"
     CDS             complement(9322..11157)
                     /locus_tag="SFZ78_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8211882.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FEKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLSARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDIVVTEFSLDGRRVQ"
BASE COUNT         3786 a         2228 c         1472 g         3763 t
ORIGIN      
        1 ttgttaaatg aattttaaat ttcactaata caaggagagt ttatgctaca tgaatataga
       61 gaattaatgt cagagctaaa aggtaaagat gctcattttg ataaactatt tgatcgtcat
      121 aatgaacttg atgacatgat taaagatgca gaagaaggta gaacttctct tagcagcatg
      181 gaaatttcaa ctttaaaaaa agaaaagctt catgtaaaag atgaacttag ccaatatcta
      241 gcaaattata aaaaataagg caaaacaatg tttggaagta aaataaacca ttctgatctt
      301 caaaaacttg aagaagaaaa taaaaatctt acacataaaa ttgaaaaatt tcaatcggaa
      361 aatttagaat taaaaaataa aattacatca ttagaacaag cggctttaga gtctaaactt
      421 aaaacagatc ttttaaatgt tttattaact ggggttttaa aaaatattac tattattcaa
      481 ggcgatatgt tagaaaatgt aaataaggca gaagttatct ctagctattc taaaacttct
      541 cttgctgaaa tggatgaact taaccatatt gctaattcta tcaatgcctc tttgagaaat
      601 attacagaat cagccaataa aacaagagat gttgcaggaa cattgcatag aagtgtagat
      661 gaaattacta atgtaattaa tctaattaaa gatgtttccg atcaaaccaa tcttttagct
      721 cttaacgctg ccatagaagc tgcacgcgca ggtgaacatg ggcgtggttt tgctgttgtt
      781 gccgatgaag taagaaaact agctgaaaaa acacaaaaag caaccacaga agttgaaatg
      841 aatatcaacc ttctaaagca aaatgcaaat gaaatgtata ctcaaagtga gcaagttgaa
      901 aaaatttcta tagattctaa tgctcatatt atgagttttt ctgaaaaatt tactcacttg
      961 gtaaatgaag cgcattctac taattcaaat gcagttggta tcgcttcaga agctttcgta
     1021 tctttagcaa aactagatca tatagctttt aaattaaatg gttataaaga aattttttcc
     1081 aaatcaggaa agcaattagc cgatcataca tcttgtcgct taggaaaatg gcttgctagc
     1141 acaggaaaag aaagatttgg gcaaaataaa agcttcttaa aaattaacga gccacatgaa
     1201 aaagttcatg aaaatatgaa taatgctata acaatagcaa atacagaaga tattagcaaa
     1261 gatattactc aacacagcat aattaataaa tgcgaagttg ctgaaaatgc atcacttgat
     1321 cttttcaatg tatttaaaga aatgcttgat gagtcagatc attaaaatcc caggttgaac
     1381 ctttttaagg tttaacctaa ataatcttta attttcccca cttttccttt aaaaaccaca
     1441 tataagcaaa atcaagcaaa ggcgttctta tcatattttt acattttttt tcaaaatcct
     1501 gcaccttaac ataaacagct tcaatctctt catcatcaac tccacctcca gaagaaattt
     1561 tatctttttc atcaacttct gcgaaataaa agctttgctt gcttacacct gaaccaaatc
     1621 ctgtataaaa atctcctatt ttttctaaat ttttaggagc atatcctagt tcttctatac
     1681 attcttcttt tgctatttcc tctaaagata attttttatc cacaagccca gaacaaagct
     1741 ctatagtata gcccatatca tcatctttta cataatcttt atcatgcatt tgatgatacc
     1801 aaagtggtat acgaaattgg cgtacaaaaa taaaactttc taattcttta tgatacaaaa
     1861 gcactgaaac actatcttta gattctataa aatcccaagt gcaaagccta ccattacttt
     1921 cataagcaaa tctcttaggc ttaatataat ttgatttttc aaaagaaagt tcttttaaat
     1981 ttttaaacgc cataataaaa ccttttattt atttttcaca ttgtacttta tttttgcttt
     2041 tttgaaaaca taaaggtgat taaagcctta aaaaattaaa aatcatattt ataacttaac
     2101 caaaaacttc ttccttctgt atagtcttga tagcgatttg catatccagc aggattagcc
     2161 ccatcccatc ttgtaacttg cggatcaaag aaatttttat caaaaagatt ttacactgca
     2221 aaacttaagc tagattgctt attgatttta taatttatcc ctaaatctac tatataaaaa
     2281 ggcttatatt tttgccatgg cagactacca ttaccgccac cttttgcttt agctatagta
     2341 tcaagtcttg ctcgtgtttt tatataggaa ctaaatttac ctcgctcata gtttaatttt
     2401 aacattgcta tatgtcttgg taaattttct attctatcac caccaaacca atttttttga
     2461 ccatctttgt agcgattatc cataaaagta taacttgaat ttaggctaaa accattgtaa
     2521 gttttggtat taatgcaaat tctatacctt tagtctgcgt ttttccaaga ttaataggac
     2581 gcttacaaac aatgccattg ctacaattaa tatcattatt ttgcatacct gttaaatctt
     2641 cactactgat ttgatttgta aaatcagtaa taaatcctgt agtagaataa tgcgcaaaat
     2701 caaataccat aaaatcaaca cccaattcat aatttatact ttcttctggt tttaagtcag
     2761 ggtttccaaa ataagcatta ttattggcat aattataata tccatttgtc aactgcttgg
     2821 cagcaggagt tttatagcct tttgaaacac ctcctttcaa ggctatatta tcatttaagt
     2881 gataaaccaa ataaacccta ggcgtaaatt tagaatcaaa caaatcgcta taaatataac
     2941 gcaaacctgt agtaaaaatc aaatcatcgg ttataaaata ctcattttcc ccataaagcg
     3001 caaccgtggt ttgatcaaga tttttacctc ttatttgact acctgcgctt gcttgatcat
     3061 tttttaatat ctcataatca atccttgcac caaaggtatt tactaaatta ccgtattgac
     3121 ctaaattcca aggtaaaaca accttacctt ctcctaccca aatttggcta tgcagctcct
     3181 tatccttagt gctaccatat tataaatatg agttagttga accaaaatca tagttaccat
     3241 catgatttaa aacaatatta tccttaaaaa gttgtctttc acttttaata gccctactac
     3301 ttgtagaatt cactgaaatt tcattaatat atcgttctat atcaaaatat atattatttt
     3361 tatcatctac tgtccaatta agcctagaac caaaacccaa gctagtaaaa gcacctgggc
     3421 tatgactagc aatttgataa ttatcaggtc tttgattgtt attattccaa accggtgtag
     3481 gccattttaa atcagaagct gccttatcat aatacttcaa ccttgcagaa attgataatg
     3541 tatcttcaat caaaggggtt gctacataag cattaaaacc gcccgcattg ccatagtgat
     3601 tagagtgctg ttgtaaaaga gtattaaatt ctatatttgc ttcgatttta tcaggatttt
     3661 tcttagtgat aatatttatc acaccgccta cagcatcact gccataaagt gtagaagctg
     3721 gaccacgtat aacctcaata cgctctatca tagacaaagg tggcagatat cctgactcac
     3781 tgccactaaa accattatca taaaacccat ttgcaacact ttgacgtttt ccatcaatta
     3841 aaactagagt ataagaacta ccaaaacctc gtatgctaaa atcataagtg cctgttttat
     3901 tcatagtcac atctacacct ggaatatctc ctatagcctc tcctatatcc ttaattggct
     3961 tttttcaagc tcttcttttg taatgataga aatactagca ggcgcatcaa ccaaatcttg
     4021 ttcaaaacca ctagcactaa ccacaacatc attaagttga tatttttctt ctgcttttaa
     4081 caaagctcca gataaaatta aaaaacacag taaacttttt ttaaatttta tatttttgat
     4141 ttgagtcaaa ttaattcctt taaaaataat tattttgata tttaaaatca tttttgaagt
     4201 ataaaaaaag aatactttta attaacttaa ttttgataac aattataaat aataaaatta
     4261 tttaaaaaag cgaagtaaaa gcctaagcct cttgataggc tccaagcttt aaaattttct
     4321 gcatacgatt tgcagaaagt tctcgtacat caatattttc aagttcattt agagattttt
     4381 ttacataatc agcaatagct actgctgcag cctctttatt gcgatgtgca ccatttgtag
     4441 gctcatctat aacatcatca attaaacctt gagattttaa atcatcagcc gttaccttca
     4501 tagccttggt tgcagcttca ctttttgcag gatcattcca aagtattgca gcacaacctt
     4561 caggagaaat tactgaaaaa acagaatttt tcatcattgc aagtttatct gcaaccccta
     4621 tagctaacgc cccgccacta ccgccttctc cgataactat agcaatggtc ggtattttca
     4681 aatcacttaa ttcatataaa tttctagcga tagcttcact ttgtcctctt tcttcagcac
     4741 ctattccagg ataagcacct ggagtatcta tcaaaaataa aataggaatt tgaaatttct
     4801 ctgcaagtct tgctactctt aaggctttgc gatatccttc aggatgtggc atcccaaaat
     4861 ttctagcgat tttatctttt gttccacgtc ctttttgctc accaattaca attatttttt
     4921 tctctcctaa ataacccata aaacaaacaa tagcaggatc atctctaaag gcacgatcac
     4981 catgtatttc gtgagcgtca tttaaaataa gttcaatata gtcaagagca taagggcgat
     5041 ctggatgacg cgctaattgc aaacgctgaa aatcacttaa attcttataa gttttagaaa
     5101 tttctttttc aagatttttc tttaaaatcg atacagcttc agtatctcct ttaatctgag
     5161 cattgataat gtcctcgtca atttgctgaa tatttttttc aaaatctaaa taagaagcca
     5221 tattaatcta cttttttaaa tacaacacag ccatttgtgc caccaaaacc aaaagaatta
     5281 ctcatcacca cttttaaatc tacttttctt gatatatttg gaatataatc aagatcacat
     5341 tcatcatctt ttacaagctg attgattgta ggtggaacta ccccatctct taaagccata
     5401 acactaacaa ctgcttcaat tgcacctgca gcacccaagc aatgacctgt ttgtcctttg
     5461 gtggaactta taagcgggat attattgcca aaaagctctt taattgctgc tgtttcattt
     5521 ttgtcattta caggggttga agttccatgt gcattgatat aatctacctt tggattccct
     5581 gccatattta aagctttttt catagctctt aaaggcccat ctaaagttgg tgaagtaata
     5641 tgatgcgcat ctgcactttc tccaaatcca attaattcag cataaatcgt agcaccgcgt
     5701 tttttagcct cttcatattc ctcaaaaact aaagctccag caccttctcc catgacaaaa
     5761 ccatctcttt ctttgtcaaa tggtcttgaa gcatgctgtg gatcttcatt tctagttgat
     5821 aaagctttca ttgaagcaaa accacctata cctacaggac aaatcgcagc ttctgcacct
     5881 atgactaaca tctttttagc atttcccaaa gctatacttt tataagcttc tcctatagca
     5941 tgagttcctg ctgcacaagc tgtaacacaa gaaatatttg gccctttaag tccatgctct
     6001 atagaaatca aacctcctaa catatttaca agtgctgaag gtatgaaaaa aggggaaatt
     6061 ttacgcggac ctcgctcgga acaaataatg gaattttttt ctatgttagg caaacctcca
     6121 ataccagaag ccgaaacaat gccaaattct tctttatcta attcttcact aaatccagca
     6181 tcctgcattg cttctcttgc tgctttaatt ccaagttgta tgaaacggtc aatttttttt
     6241 acttctttgc catcaacaac ctctaatgga tcaaaatttt taacttcagc tgcaatttga
     6301 acaggaaagt ccgtagcatc aaaaagagta attttattta ctccgctttc tccattgcaa
     6361 attgctttaa atgaactttc tttatctaaa ccaagggcat tgatcatacc aatacctgta
     6421 actacaactc ttttcaagaa taagctcctt gcaagaaaaa aaattatttt tttagattgt
     6481 caatataatt tacaacatct tcaattttaa ttaatttttc agcatcacta tctggaattt
     6541 ctacttcaaa tttttcttct aaagccataa taagctctac aacatctaaa gaatcagcac
     6601 ctaaatcttc aataattttt gattccattt taactgcatc tgcatcaata cttaattgct
     6661 ctactactac tgcttttaca tcatcaaatg ttgccatttg ttctccttca aaaaattaaa
     6721 ataaagcgta ttttactata aaaagcttaa aatatttata gtttttcatt atacttgaaa
     6781 ataaaatatt aaaacataaa ggaaaaatga tgcttttctc taatttaatc aaagaaaatc
     6841 aaaaaatttg ggatgcttat ctacatcatg attttgttaa aaaattagaa gataaaagcc
     6901 taaagcaaga aaattttctt ttttatctca agcaagatta tatttatttg cttaattacg
     6961 caaaatgcta cgcaaggtta gcacttaact caaatactgc aaaagaactt cgttttgcta
     7021 tgaaatttca aaattatata gttgaaggag aaatggagct tcatcgtgca attttatctc
     7081 ttggcattaa tgcagatgaa ctcgatataa aagatgaaag tttagtcaat atagcctatt
     7141 cgcgttatat gttaagcgta ggtgaaaatg gagatttttt agatatgtta gttgctctta
     7201 gtgcttgcgc tataggctat gcaaaaatag gtgctgaaat tataaatcgt ttaaaaaatg
     7261 aaaatttaaa agatcatcct tacaaggaat ggattttgac ctatggaagt gaaaattttc
     7321 aaaatgaagc taaagaattt gaagattttg ttaattctta tacttcaagt gttagtgcac
     7381 aaaaattcca aaaactcagc gaaatttttc atactgtaac acgcttggaa gtggcttttt
     7441 gggagcattc tttaagaatg gaattaaatc tttaaacatg ggctttttgc ccatgttttt
     7501 atgcaatttt acttgcatca ataatattat aatctaaacc aaccgtttct ttagaaagtc
     7561 ctaatgcaag tcctactaat tgtgataaat gaataatagg caatcttgct ttagaattag
     7621 tataatcttg aaatctttct tgatagatat caagctgcat ttgacaaagt ggacaaggtg
     7681 ttacaacaca atcagcttga ttttcacttg cattattgac aatttgacta gacatttttt
     7741 tcacagattt ttctgcagga taagaagcat gaaaaccaca acaatcaagg cgtttttcaa
     7801 aaggaactat tttagcccct aaaacttcta ctacactttc aaaacttttt ggattggttg
     7861 aactttcttt tttaccgaaa gtatcttcag gtcttaaact atggcaacca taaaataaag
     7921 ctacttttaa atttgaaagc ggctttttca ccttgctttt taaattatcc aaatcctcat
     7981 aaagctccca caaaagactt gtaataggcg ttgaaccttg atatttcatt ccaccttttg
     8041 ctaaaaaagt attgatgcgt tcttttgcac ccttatcaag agtatttttt gctttagcta
     8101 aagttagcat acaagtacta caagttgtaa gcattggcat tttcatctct tctgctaaag
     8161 caatatttct tgcattagct accaaagtcg caataggatc aacacactgc gcttgagaag
     8221 ccccacaaca actccacccc ttaatttcat tcaacttcca acccaaaata ggtgcaatag
     8281 cttcaagtga aattttagat tcttttgcag cttgagataa aacacaacct ggaaaaaaag
     8341 cgtattcttt ttgcatattt tactccttaa cagcagcttc ttgtgccgcc tttatcattt
     8401 taaccaaatc tttatgccat tctatttcat cctcgccaaa aacatgcata ggattcattt
     8461 ttcctgcacg cataagttta aaagctatat ctgttttacc catagaacct ataacaccct
     8521 cagaacgcaa agcaagataa atttcattca agcgtcctga accttcaact aaatctttat
     8581 aaaaagcttc agcatgatca gaccctaagc cttcatttaa acctttttta atcgccatca
     8641 ctcttaaatt tgctatatca cttactgaac ttataccctt tggacaacga tcagcgcact
     8701 cttgacaatg aacacaaagc caaagtccat tcattacgct gggttttaca tgcaacatag
     8761 gatccttacc tcgagagtcc gccgctgcac gccaagcatg agtaaaaaca aaaggttgca
     8821 tataatcgct actatctgct tctaatttat tacactctga agcacagcta ccacataaaa
     8881 tacaatccca ttgcttgcta atacgatcaa attcttcttg actttgttta cagtcctttt
     8941 ccgctgaaaa ttcatttttt gccaccatgg caggacgaat ttttcttaaa ttttctatag
     9001 aaggctccca atccacaatt aaatcagaaa ttactctaaa atttccaagc ggagaaatgc
     9061 gtatacttga aggattatca tattctttta acaaatcttg cattttagta tcacaagcaa
     9121 gataagaatg cccattcaca cgaactgcac aagccccaca aattgcagat tgacaagagg
     9181 cggtaaaatt taaagtaata tcttttgttt ttttgataaa aagcaaaaga gagagcagag
     9241 tttttccttg tatatcctta tcatcaatat cataactttg ttcatatttt tccttgccat
     9301 taaaacgatc tatgataatt ttcattgtac tcttcttcca tcaagtgaaa actcagttac
     9361 cacgatatct ttataactaa gttttaattc atcattttct aaatttacaa tgctatgttt
     9421 taagaaattt ttatcatctc gctttggata atcttctcta gtatgagccc cacggctttc
     9481 aagtctattt ctagctgata aacaagcaca gcgagaaagt aaaatcaaat taccaagctc
     9541 tacataatct gtaaaagcag tattcatcac ttcattagga tttggaatac gaattttttc
     9601 atatcttgct tgtatatctt ctaaattttt tgctagaaga tcgagttttt cttgagttct
     9661 aaaaatcccc atattatccc aattttgact tcccaactct tctcgcaatt catacatttc
     9721 ttgaccattt ccgccattat ttgtaatttc tttaaatcta gcctgccatt tttgagcaag
     9781 ttcatgagtt tttgcccctt tttcaaaact tgcatctttg gcataatttg tcgcaccaat
     9841 gcctgctaaa tgccccgtta caactgcatc ggctaaagaa tttcccccta gtctattagc
     9901 tccatgtata gaaatacaag aagcttctcc acctacataa attccagcaa ttttagtact
     9961 catatcttca aatttagcca cttcaattcc acccatagaa taatgcgccg ttggacggat
    10021 aggtacagga gtatctacta aatcaatatt ttcaaaaagc attgcagtgt gacgaatttt
    10081 tggtaaatct tttaaaattt tttcttttcc taagtggcgt acatcgcaca aaacataagc
    10141 tccaagtccc tcgccataac ctctaccttc acgaatttct gtttctatag cacgcgcaac
    10201 cacatctcgc ggtgcaagct ccattttttc atggtaattt ttcataaaac gctcaccacg
    10261 attatttaaa agatatcccc cttcaccgcg cgccgcttct gtaataagag ttccaccatt
    10321 tgcaactcct gttgggtgaa attgtatcat ctcaggatct tcaaaaccaa gtcctgctct
    10381 aagagcagct gccacaccat ctcctgtggc aataaaagga gttgaagttc tattataaaa
    10441 tatccttgtg tatccccctg tagcaatcac caaagctttg cataacacag gataaattcc
    10501 accgctttgt atatctctta aaacgacacc ctcgcatttt ccatccacaa cacctatatc
    10561 caaaagttca tgatccatta aaaatttcac accactacta atagcatcat ctaaacaaga
    10621 atgcattaaa atatgacctg ttttatctgc agaatagtta cagcgtttct tagaagctcc
    10681 tcccattaaa cgctgagcta ctccaccttg ctcatttctt gaaaacaagg ttcctataaa
    10741 atccatatta aaaatagcct ttccagctaa ttcgcaaaat tttaaagccg cgtcttgatc
    10801 taccaaataa gctccgcctt taatagtatc ataagcatgt aatttatagg aatctccatt
    10861 agaaaaatca gtaactccat taattccacc ctctgccata caagttgcgt tacgcgatgg
    10921 catcatcttt gtagctacta caacgcttaa ttttggattt tcttttctca ctgcggctgc
    10981 agcacgcaaa cctgctccac ctgatccaat taccaaaaca tcgcaagaag gtaaatttgc
    11041 atctttatcc atcttagatg aatcatctaa agcataaact ccacttgaac ttgcaactaa
    11101 agctcctaca ctaatacagg ctgtttttat aaaatctctt ctagaaaatt cacccatatc
    11161 attctcctta tttaaaaaaa ttaataataa tttttaatgt aagtcaatct tacataaccg
    11221 catgccaaaa atccaaaaac aaactctcc
//
LOCUS       DARGEM010000053        11100 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.053, whole genome shotgun sequence.
ACCESSION   DARGEM010000053 DARGEM010000000
VERSION     DARGEM010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11100
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.053"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..648
                     /gene="pglA"
                     /locus_tag="SFZ78_001009"
     CDS             <1..648
                     /gene="pglA"
                     /locus_tag="SFZ78_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8211883.1"
                     /translation="GLKESKICVIKSVGINLKKFFPIYVESKKKELFWKNLNIDKKPI
                     VLMIARALWHKGVKEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGAR
                     SDIVELLQNCDIFVLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAK
                     TKNAKDLSEKISLLLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            641..1243
                     /gene="pglC"
                     /locus_tag="SFZ78_001010"
     CDS             641..1243
                     /gene="pglC"
                     /locus_tag="SFZ78_001010"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG8211884.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            1230..1820
                     /gene="pglD"
                     /locus_tag="SFZ78_001011"
     CDS             1230..1820
                     /gene="pglD"
                     /locus_tag="SFZ78_001011"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG8211885.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGTNSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            1918..3078
                     /gene="pglE"
                     /locus_tag="SFZ78_001012"
     CDS             1918..3078
                     /gene="pglE"
                     /locus_tag="SFZ78_001012"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG8211886.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATVALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            3080..4858
                     /gene="pglF"
                     /locus_tag="SFZ78_001013"
     CDS             3080..4858
                     /gene="pglF"
                     /locus_tag="SFZ78_001013"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG8211887.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPFRMKEEEEETPCIVVGATSKALHL
                     LKGAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQ
                     EELKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVV
                     LVSGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILD
                     KQSLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKF
                     VMISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQ
                     IANNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKM
                     LLLSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIE
                     NLQICEDISEALLKIVPEFKHNKEGV"
     gene            4858..5751
                     /locus_tag="SFZ78_001014"
     CDS             4858..5751
                     /locus_tag="SFZ78_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8211888.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            5864..6256
                     /locus_tag="SFZ78_001015"
     CDS             5864..6256
                     /locus_tag="SFZ78_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG8211889.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            6279..7124
                     /locus_tag="SFZ78_001016"
     CDS             6279..7124
                     /locus_tag="SFZ78_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG8211890.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            7128..9065
                     /gene="ftsH"
                     /locus_tag="SFZ78_001017"
     CDS             7128..9065
                     /gene="ftsH"
                     /locus_tag="SFZ78_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG8211891.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            9062..9679
                     /locus_tag="SFZ78_001018"
     CDS             9062..9679
                     /locus_tag="SFZ78_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8211892.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            9689..10417
                     /gene="pssA"
                     /locus_tag="SFZ78_001019"
     CDS             9689..10417
                     /gene="pssA"
                     /locus_tag="SFZ78_001019"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG8211893.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(10408..>11100)
                     /locus_tag="SFZ78_001020"
     CDS             complement(10408..>11100)
                     /locus_tag="SFZ78_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG8211894.1"
                     /translation="KLIFNHEHQSIFKKNTSQQITLLHPTRIRRPKFVNSTHALAKII
                     HSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHFKLLNSALKELSYKYG
                     NFPVHDNLESALEATKDSLSFRMGVVHRGLEAKGLDANPFVVQKLQSSNHSIKNLLME
                     YLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTFKQFSLAGKKLNIQARIKAGFT
                     QEECEVIEKFYS"
BASE COUNT         3789 a         1264 c         2188 g         3859 t
ORIGIN      
        1 ggacttaagg aaagtaaaat ttgtgtgata aaatctgtag ggatcaattt aaaaaaattt
       61 tttcctattt atgtagaatc gaaaaaaaaa gagctttttt ggaaaaattt aaacatagat
      121 aaaaaaccca ttgtacttat gatagcaaga gctttatggc ataaaggtgt aaaagaattt
      181 tatgaaagtg ctactatgct aaaagacaaa gcaaattttg ttttagttgg tggaagagat
      241 gaaaatcctt cttgtgcgag tttggagttt ttaaactctg gcgcagtgca ttatttgggt
      301 gctagaagtg atatcgtaga acttttgcaa aattgtgata tttttgtttt gccaagctat
      361 aaagaaggct ttcctgtaag tgttttggag gcaaaagctt gcggtaaggc tatagtggtg
      421 agtgattgtg aaggttgtgt ggaggctatt tctaatgctt atgatggact ttgggcaaaa
      481 acaaaaaatg ctaaagattt aagcgaaaaa atttcacttt tattagaaga tgaaaaatta
      541 agattgaatt tagctaaaaa tgccgcccaa gatgctttac aatacgatga aaatataatc
      601 gcacagcgtt atttaaaact ttatgatagg gtaattaaga atgtatgaaa aagtttttaa
      661 aagaattttt gattttattt tagctttagt gcttttggtg cttttttctc cggtgatttt
      721 aatcactgct ttacttttaa aaatcactca aggaagtgtg atttttaccc aaaatcgtcc
      781 cgggttagat gaaaaaattt ttaaaattta taaatttaaa accatgagcg atgaaagaga
      841 tgaaaagggt gagttattaa gcgatgaatt gcgtttgaaa gcttttggaa aaatcgttag
      901 aagcttaagt ttggatgagc ttttgcaact ttttaatgtt ttaaaagggg atatgagttt
      961 tgttggacct agacctcttt tggttgagta tttgcctctt tacaataaag agcaaaaatt
     1021 gcgtcataaa gtgcgtccag gtataacagg atgggcgcag gtaaatggta gaaatgctat
     1081 ttcttggcag aaaaaattcg aacttgatgt gtattatgtg aaaaatattt cttttttgct
     1141 tgatttaaaa atcatgtttt taacagcctt aaaggtttta aaacgaagtg gggtaagcaa
     1201 agaaggacat gttacaacgg agaaatttaa tggcaagaac tgaaaaaatt tatatttatg
     1261 gtgctagtgg tcatgggctt gtttgtgaag atgtggctaa aaatatgggt tataaagaat
     1321 gtattttttt agatgatttt aaaggaatga aatttgaaag taccttacct aaatatgatt
     1381 tttttatagc cataggaaac aatgaaattc gaaaaaagat ttatcaaaaa atttcagaaa
     1441 atggctttaa aattgtcaat cttatccata aaagcgcgct tataagtcct agtgcaagta
     1501 tagaagaaaa tgcaggaatt ttaatcatgc cttacgtggt aattaatgct aaagccaaaa
     1561 tagaaaaagg cgtgattttg aatacttcaa gtgtgattga acatgaatgt gtgatagggg
     1621 aattttctca tgtgagtgta ggggctaaat gcgcaggtaa tgtaaaaatt ggtaaaaatt
     1681 gttttttagg gactaattct tgtgttttgc ctaatttaag tttggcagat gatagtattt
     1741 taggtggtgg agcaacttta gttaaaaatc aagatgaaaa aggtgttttt gtgggagtac
     1801 ctgcaaaaag aaaaatatga aatgattata aaaagatttt tgtttgattc tttgtaaatt
     1861 tttttaggta aaatagagtc aatttataaa aattttgttt tacacaaagg ataaatcatg
     1921 agattttttc tttctcctcc gcatatgggt ggtaatgaat taaaatatat agaagaagtt
     1981 ttcaaaagca attatatagc acctttgggt gaatttgtaa atcgctttga acaaagtgtc
     2041 aaggcttaca gtaaaagtga aaatgcctta gctttaaatt cagccacagt ggctttgcat
     2101 ttagctttaa gggtggcagg ggtaaaacaa gatgatattg ttttggcttc ttcttttact
     2161 tttatcgctt cagtagcacc tatttgttat cttaaagcaa aacctgtatt tatagattgt
     2221 gatgaaactt ataatatcga tgtagattta ttaaagcttg ctattaaaga atgtgaaaaa
     2281 aaaccaaaag cattgatttt aactcatctt tatggcaatg cggctaaaat ggatgaaatt
     2341 gttgaaattt gcaaagaaaa tgaaattgtt ttaatcgaag atgctgctga agctttagga
     2401 agtttttata agaataaagc tttaggaact tttggagaat ttggagctta ttcttataat
     2461 ggcaataaaa ttatcaccac ttcaggtgga ggtatgctta taggaaaaaa taaagaaaag
     2521 attgaaaaag caagatttta tagcactcaa gctagggaaa attgtttgca ttatgaacat
     2581 ttagattatg gttataatta ccgcttaagc aatgttttag gagctattgg cgtagcgcaa
     2641 atggaggttt tagaacaaag agtgcttaaa aaaagagaaa tttatgagtg gtataaagaa
     2701 tttttaggag agtgttttag ctttttagat gaattagaaa attcaagaag caatcgctgg
     2761 ttaagtacag ctttgattga ttttgataaa aatgaactta attcttgtca aaaagatata
     2821 aatatcagtc aaaaaaatat tactttgcat ccaaaaattt caaaactcat agaagatttg
     2881 aaaaatgaac aaatagaaac aagaccatta tggaaagcta tgcacgctca agaagtattt
     2941 aaaggagcta aggcttatct taatggcaat agtgagttat ttttccaaaa aggaatttgt
     3001 ttgccaagtg gcacggcgat gagtaaagat gatgtttatg aaatttcaaa actgatctta
     3061 aagagcataa aggcttaaaa tgatttttta taaaagcaaa agattagcat tttttttaac
     3121 ttcagatatt gttttaattt tacttagcgt ttatctggct ttttctttga gatttagtgg
     3181 agatattccg agtatttttt atcatggtat gatggtttct gctattattt tgcttgtttt
     3241 aaaactttca tttttgtttg tttttagaat ttataaagta gcttggagat ttttttctct
     3301 caatgaagca agaaagattt ttatcgcttt gcttttagct gagttttgtt tttttcttat
     3361 tttttatttt tttagtgatt tttttaatcc ttttccaaga agtgctattg tgatagattt
     3421 tgttctttct tatatgttta taggtacttt aagaattagc aaaagaatgc ttgtggattt
     3481 taaacctttt agaatgaaag aagaagaaga agaaactcct tgtattgtag taggggcaac
     3541 ttctaaggct ttgcatttgt taaaaggtgc aaaagaaggt tctttagggc tttttcctgt
     3601 aggcgtagtt gatgcgagaa aagagcttat agggacttat tgtgataaat ttattgtaga
     3661 agaaaaagaa aaaataaaat cttatgtaga acaaggggta aaaactgcca ttattgcttt
     3721 aagacttgag caagaagagc ttaaaaaact ttttgaagaa cttgtagctt atggtatttg
     3781 cgatgtaaaa atattttctt ttacaagaaa cgaagcaaga gatatcagta tagaagactt
     3841 gcttgctaga aaaccaaaag atttagatga tagtgctgtg gcggcttttt taaaagacaa
     3901 ggtagttttg gtaagtggag caggtggaac tataggcagt gaactttgta agcaatgtat
     3961 taaatttggt gctaagcatc ttattatggt tgatcatagt gagtataatc tttataagat
     4021 caatgatgat ttaaatttat ataaagaaaa aattactcct attttactga gtattttaga
     4081 taagcaaagt ttagatgagg tattaaaaac ttataaaccc gagcttattt tacatgcagc
     4141 cgcttataaa catgtgcctc tttgcgaaca aaatccacat tcagcagtaa tcaataatat
     4201 tttaggaacc aaaattttat gcgacagtgc taaagaaaat aaagtagcta aatttgtgat
     4261 gataagtaca gataaagcag tgcgaccaac aaatattatg ggctgtacta aaagagtttg
     4321 cgagctttat actttaagta tgagtgatga aaattttgaa gttgcttgtg tgcgttttgg
     4381 taatgtttta ggttctagtg gtagtgtgat accgaaattt aaagcacaaa ttgccaataa
     4441 tgagccttta actttaacgc accctgatat agtgcgttat tttatgcttg tggctgaggc
     4501 agtgcaactt gttttacagg ctggagctat cgcaaaagga ggagagcttt ttgttttgga
     4561 tatgggtagg cctgtgaaaa tcatagattt agctaaaaaa atgcttttac tttctaatcg
     4621 caatgattta gaaattaaaa tcacaggttt aagaaaaggt gagaagcttt atgaagagct
     4681 tttgattgat gaaaatgatg ctaaaacgca atatgagagt atttttgtag caaagaatga
     4741 gaaggttgat cttgattggc ttaataaaga gatagaaaat ttacaaatat gtgaagatat
     4801 ttcagaggct ttattaaaga ttgtacctga atttaaacac aataaagaag gcgtataatg
     4861 tatataaaag atatacaaag atttgaagat aatcgctatc gtgctagggc ttatatgagt
     4921 tatattttaa caagaaatct gcccaataaa cttcctgaca ttcaccttga aacgattaaa
     4981 acagctttgg ataaaatagc tcatgaagtt gttgtttttg atgctttgta tattttagat
     5041 atttcaggca tgcaaataga aaatgcgatt tccttaaata aggctcatga aataggacag
     5101 ggtgaggata gaagtactcg ttcttatttc tatagagctg taaaattaag acgatgtgtt
     5161 ttgagcgatc cttatccttc ggttttaaat aatgagcttt gcgtgacagc ttctatgcca
     5221 atttacgatg ataaaaataa cttgcttttt gttgtttgta ttgatataaa acttgaagat
     5281 attttaaaga ttattcaagc aggaaaattt gaatttgttt ttactcaatt tagtcgttcg
     5341 gtatattttt gcttcgcact ggttttattt gtgattactt gttttttatt tcaaaaaggt
     5401 ttttttagtc tttttgataa tcaagctata ggtatagaac atatgtttga aagtaccatc
     5461 gctataactt tggctttagc tatttttgat ttggcaaaaa ctttgatcga acaagaagta
     5521 ttaggaagga caaaaaaaga agaaggtgga attcaaaaaa ctatggtgag atttttgggt
     5581 tctattatca ttgctttagc tatagaagct ttgatgttgg tatttaaact tgctattggt
     5641 gatctttctc agatgattta tgcgatttat cttatcggtg gagtgagctt gcttctttta
     5701 ggtttaagtg tatatttatt tacggttaag tataaaaata ataatatttg agtaaaaatt
     5761 taagtaaaag atgatataat gctgtttttt aaaatttttt agcttgatta ataaggctaa
     5821 aaagggtaaa ataaaactat aaaaactttg aaaggacgaa attgtgaaat tgttagttgt
     5881 tgatgacagt tctactatga gaaggattat taaaaatacc ctaacaagac ttggacacga
     5941 tgatgtttta gaagctgagc atggcgttga agcttgggat ttattaacta aaaatgaaga
     6001 tgtaaaagtt ttaattacag attggaatat gccagaaatg aatggcttgg agttggtaaa
     6061 aaaagtaaga gcagagaaaa aatatgaaga tatgcctatc atcatggtta caactgaggg
     6121 cggaaaagct gaagtgatta ctgctttaaa agctggcgta aataactata ttgtaaaacc
     6181 ttttactcca caagttttaa aggaaaaact tgaagatgtt ttaggaacag gaagtggaga
     6241 aggtgcagct gagtaaaggc tgatttttaa aattctaaat gcaaaaaaaa tattatgaat
     6301 tgttctttat cgtagaagag cggtataaaa atttatttct tgattttgct tttgatttag
     6361 gtatagaagc catagaagag aaagataatg gtgtttacat tagatcccat gagagtttag
     6421 aagagttttc atgggcactt gaaatatttg ctcaaaaact tacaactact ttcaatttaa
     6481 accataaaat tatttctaat ttaagtcttg tagagaaaga aaacaaggac tggatacaag
     6541 aatataaaaa aggcataaaa cctatcttag tggataatgt ttacatccat acaacttggc
     6601 aagaagaaaa gaagaattgt ataaatataa agattaatcc agccttagcc tttggctcag
     6661 gacatcacga aagcacatat tcttgtgtaa aatttttaca aaaattttct aaaagtaaat
     6721 taagagcttt agatcttggt tgtggtagtg gaattttggg tattattatg gcaaagtttg
     6781 gttgtaatgt tgaaatttgt gatactgatg agttggctat tgatagttct ttagaaaatg
     6841 caagattaaa tggtgtcgat tttcacaagg cttggtgtgg atctatagat aaagcaaatg
     6901 gtttatataa tctaattgtt gcaaatatca ttgcagatgt gattttaatt ttagaaaaag
     6961 atattaaaaa ccatttagaa gataatgcta tacttatttt gtcaggaatt ttagataaat
     7021 attcaacaag aattaaagaa aaatttcaag atttggaact cattgatgaa atgcaaatca
     7081 atgagtggtg tagttttgta tataaaaata ataaaaaagg ataagtaatg aataataata
     7141 cccaaaataa taagggtaat ccgcagggta ataatttttt taacaaaaat cccattttta
     7201 tttttgcgat ttttgcaatt gtaatgataa ttatttttaa gggatttttt gatggcaatg
     7261 gttcttttgg cggggcattg aatggcaatg aagtaaataa aaatgtccct tattctgagt
     7321 taaaaaagct tattgaaagt ggacaaatca atcaagttag tataggacaa acaacaatca
     7381 aagcgatttc aagctctcac aatactgttt atacagcaaa aaaagttaat gatcctgagc
     7441 ttgtgagttt actagatagt aaaaatatcg cttatggtgc gtattctgaa acaaattggt
     7501 ttacggatat acttttttca tgggttttgc cagtatttat tttctttggt atttggatgt
     7561 ttttggcaag tcgtatgcaa aaaaatatgg gaagttctat attgggtata ggaagttcta
     7621 agaagcttgt aaattcagaa aaacctaaag taaaatttag cgatgtagct ggtgttgaag
     7681 aagctaaaga agaagtaaaa gaaattgtag attttttaaa gtatcctgaa agatatatta
     7741 aattgggagc taaaattcca aaaggacttt tacttgttgg gcctccaggt acaggaaaaa
     7801 ctttgcttgc aaaagcagtt gcaggtgaag ctgatgtgcc gttttttagt gtttcaggtt
     7861 cgtcttttat agaaatgttt gtgggtgtag gtgcttctcg tgtgagagat ttatttgaaa
     7921 atgcaaaaaa agaagctcct gctattgttt ttatagatga aatagatgct attggtaaaa
     7981 gtcgtgcagc aagtggcatg atgggtggaa acgatgaaag agagcaaact ttaaatcagc
     8041 ttttggctga aatggatggc tttgggacag aaagttcccc agtcattgtt ttagcagcaa
     8101 caaatcgccc agaagtttta gatgcagcgc ttttaagacc aggaaggttt gatagacaag
     8161 ttttagttga taaacctgat tttaaaggta ggtgtgatat tttaaaagtg cacatgaaag
     8221 atgtcaaaat ctccccaaaa gttaaagtag aagatatagc acgcttaacc gcagggcttg
     8281 caggagctga tcttgcaaat attattaatg aagcagcgct tttagcgggt agggattcta
     8341 aaaaatatgt agaacaaaat gatttagttg aagctgttga aagagctata gcaggacttg
     8401 agaagaaatc acgtcgtatt aatgaaaaag aaaagaaaat tgttacttat catgaatgtg
     8461 gtcatgcttt gattgctgaa actaccaaag gcgcaaaacg tgtaagtaag gtttctgtga
     8521 ttccgcgtgg tcttgcggct ttaggttata ctttaaatac tcctgaggaa aataaatttt
     8581 taatgcaaaa acatgaactt atcgctgaag tagatgtact tttgggtggt cgtgcagctg
     8641 aagaagtgtt tataggtgaa atttcaacgg gtgcaagtaa tgatttagaa agagcaaccg
     8701 atatcataaa agctatgatt tctatgtatg gtatgagtga aattgcagga cttatggtac
     8761 ttgaaaaaca aagaaatact ttcttaagtg gtggacaaac tatcaaagat tattctgaaa
     8821 agatggcaga atctttagat gattatgtaa agaaaacctt ggatgaacgc tataaagatg
     8881 ttaaagatac tttaaatact tataagggag cgattgagac tatggttgca gccctttatg
     8941 aagaagaaac tattgaaggt aataaagtgc gcgagattat taaagagttt gaggatcaaa
     9001 atagtctacc aactcgttta caagaactcg aagaagttaa aactgaagtt aaagtagaag
     9061 aatgaaagat tttattgcaa aagatggata tttaagtctt attattttaa gcttaatttt
     9121 tatttttgtg tggatttttt attctttttc catcttgcta ttagcattaa ttgtaatttg
     9181 tatttttctt tttagggcgc ccaaaagaga acttgtttgt agtgatgaaa aagctatttt
     9241 tgcacctatg gatggtaggg ttactaaaat agaaaatatt catcataaag atttgggtga
     9301 atgtgttgaa attactatta aaaatgctct ttatgatgct gggaatttta atacaccttt
     9361 tgcaatgtct ataatagata ttcgtttacg acatgggctt tttttgtgca gtgaattaaa
     9421 atctgcaaaa atgatgaatg aaagagcttt tattttggca aaagttaaag agaataaaac
     9481 gatagccttg cgaatctatg caggttcttt tgatagaaaa ttaaagcttg ataatatttc
     9541 tcatgattta aaagcaggag atagaatggg ttttttaatt aatggctcta taagtttact
     9601 tttaccaaaa gatactagaa ttcatatagg cttaaatgat gaaattaaag caggttcatt
     9661 gctaggctat tttgcgtaag gaaaaataat gaataacaga ccgcaactaa tttatatttt
     9721 acccaatctt tttacagctg cttcagcttt tttaggggtt atttctatta tagcttcaat
     9781 acatggaaat tattatacag ctttgattta tattatttta tctttgattt gcgatgggct
     9841 tgatggccgt gttgcaagac ttacaaattc tacttcaaaa tttggagtag aatttgattc
     9901 tttggctgat ctagtagctt ttggagttgc tccagcggtt cttttttata tggcgatagg
     9961 ttatgatttt ggaaaacttg gatctttgat tacagctttt tttgtggttt ttggagctat
    10021 tcgtttggcg agatttaatg ttaccacagg cacttatgaa ccctccgttt ttataggtct
    10081 tcctatacct actgcagcag ttgtgagtgc tatatggact tatgcgttta tcagttatga
    10141 ttttttaaag ccttatggcg tagttttttt ggtgcttcaa gcaattttag ggcttttaat
    10201 ggtaagtaat atacgttatc ctagttttaa aaagcttgat tttaatcgtt ctagtgtttt
    10261 aaaagttttg attattttaa ttataatatt ttcattttta tatctttacc ctcttgaaag
    10321 tttagtaatt ttagcaagct tgtatgtgct ttatggaatt attcgggttt tatataccat
    10381 tatcgtttca aaatttaaga taagaaatca agagtaaaat ttttcaatga cttcgcattc
    10441 ttcttgagtg aagccagctt tgattcttgc ttgaatgtta agtttttttc ccgcaagaga
    10501 gaattgttta aatgttttgc aaagctcaat aaaatcatac ctgttttgat ttgcaaattt
    10561 ccaccaagta tctccttttt taacgtgttt tatttcatca ttaagtataa tttcaagata
    10621 ttccattaga agatttttaa tggaatgatt ggaactttga agtttttgaa caacaaaggg
    10681 gttggcatca agccctttag cttctaaacc tctatgaact actcccattc taaagcttaa
    10741 agagtctttt gtagcttcta gagcagattc taaattatca tgcactggaa aatttccata
    10801 tttgtaacta agttctttaa gtgctgaatt taaaagtttg aaatgtttaa tttcctcatc
    10861 tgctacctcc agccaatcgt aataaaattg caaaggtaga tttttaaagc gataactcgc
    10921 atctaaagcc aggttaattg cattaaattc tatatgagcg actgaatgaa ttattttagc
    10981 aagcgcatga gttgaattga caaatttagg ccttcttata cgcgtaggat gaagcaaggt
    11041 aatttgttgt gatgtatttt ttttgaaaat gctttgatgc tcgtgattaa aaatcaattt
//
LOCUS       DARGEM010000054        11017 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.054, whole genome shotgun sequence.
ACCESSION   DARGEM010000054 DARGEM010000000
VERSION     DARGEM010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11017
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.054"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(21..650)
                     /locus_tag="SFZ78_001021"
     CDS             complement(21..650)
                     /locus_tag="SFZ78_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HEG8211895.1"
                     /translation="MQMQEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLFIKQVLKQDDGVILHSLNPLYKDIFYKNGDFLLIGVVVGELSKM"
     gene            807..1236
                     /locus_tag="SFZ78_001022"
                     /pseudo
     CDS             807..1236
                     /locus_tag="SFZ78_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903009.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1302..2558
                     /gene="murA"
                     /locus_tag="SFZ78_001023"
     CDS             1302..2558
                     /gene="murA"
                     /locus_tag="SFZ78_001023"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG8211896.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            2555..3715
                     /locus_tag="SFZ78_001024"
     CDS             2555..3715
                     /locus_tag="SFZ78_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8211897.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNTALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKTPKQYNAYRYKGEELKKGELLLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMFQNASYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENISELKKGDEITLLKI"
     gene            complement(3737..4585)
                     /gene="lepB"
                     /locus_tag="SFZ78_001025"
     CDS             complement(3737..4585)
                     /gene="lepB"
                     /locus_tag="SFZ78_001025"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG8211898.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGSQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(4595..5443)
                     /gene="folD"
                     /locus_tag="SFZ78_001026"
     CDS             complement(4595..5443)
                     /gene="folD"
                     /locus_tag="SFZ78_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG8211899.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVIDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            5523..5870
                     /locus_tag="SFZ78_001027"
     CDS             5523..5870
                     /locus_tag="SFZ78_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211900.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGT
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            5867..7141
                     /gene="hemL"
                     /locus_tag="SFZ78_001028"
     CDS             5867..7141
                     /gene="hemL"
                     /locus_tag="SFZ78_001028"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG8211901.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            7138..7467
                     /locus_tag="SFZ78_001029"
     CDS             7138..7467
                     /locus_tag="SFZ78_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG8211902.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            7467..7970
                     /locus_tag="SFZ78_001030"
     CDS             7467..7970
                     /locus_tag="SFZ78_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211903.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKE
                     KIHFFAMFFTLFKLMAYVVLVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKK
                     YESKKNY"
     gene            7948..9135
                     /locus_tag="SFZ78_001031"
     CDS             7948..9135
                     /locus_tag="SFZ78_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8211904.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            9128..>11017
                     /locus_tag="SFZ78_001032"
     CDS             9128..>11017
                     /locus_tag="SFZ78_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8211905.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETLADDAKTNIKQDVKNEENLPKKEVNANLDSSTK
                     THEENIKENPKFYETKTESKTSINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNN"
BASE COUNT         4091 a         1672 c         1618 g         3636 t
ORIGIN      
        1 gcttagctta ttgtgtgctg ttacatctta gaaagttctc caactactac accaattagc
       61 aaaaaatctc catttttata aaatatatct ttatataaag gatttaaaga gtgtaaaatc
      121 actccatcat cttgttttaa aacttgtttt ataaaaagtc catctctagt attaatcaca
      181 caaatgcttt tattcttaaa agttttattt ctatctatta cacaaattga accatctttt
      241 attattggtt ccatactctc tccgtaacaa gtaataaact cacattcttt acttccaaaa
      301 aagtttaaaa ccttttcgtc gatgattaaa tcagagctat caatcaaatc atttatacca
      361 cctccgccta aacttgcatt tgttttataa agctttaaaa ttttatactt gttttcacat
      421 tctaattgat cttttgggga acttccatag aagaaataat taatgcttat atttctttga
      481 tttaaaaagt ttaggatttg tggatatgga atggagtttc taaatttcat ggaattaaaa
      541 gtatcaggat gaattcctag ttctttggct atatcttttg tttttaaatt acacttacct
      601 tcactggcta atatatcttt taacttttca atcacttctt gcatttgcat gttaaatcct
      661 ttgattttaa tttcaaagaa atttaacaaa aaattacaaa aggcaattaa aaacttttgt
      721 tttaaaaggt taatttttta agttaaaatt ataaatttat aaataaaaaa ccgataacaa
      781 tataaattaa tttaaaaaga tttaagatga aaatagatac tttgacaaaa aattttagca
      841 attatcaaac acaaataaac aaagacaatg atttggtaag taatgttcat agcgacaatg
      901 tggttaaaat tcaaatttca gatgaagcaa gaagtttaag tcaaacaaat tcaaaaaatg
      961 aaaaagaata tgaaatcaaa gtaagtcaag aaaaaataga aaaccacaaa gaccaaaatt
     1021 ccattcaaaa tagcaaaggt ggcgtaaatc ccgcattaga ggctttaata gcaaaattag
     1081 ctggaatttt agctaaaatt gcagaactta ctcaaaaaat gacaaacgct aacgaacaaa
     1141 tgaaaacgga catttcaaaa acaaattgat gtgctaaaat ctcaagcaga tataattcaa
     1201 gctcaaattc aagaactcca aagccaacaa acttgattat attttttcaa aagtttaaga
     1261 atgctataat gatgcatttt taaacttttt caaggaaaaa tatgacttat ctagaaatcg
     1321 aaggcacaaa tcatctaagc ggaaatgtta caataagcgg agcaaaaaat gctgccctac
     1381 ccttgatcgt ttcaagcata cttgctaaaa atgaagtaaa aatcaacaat gttcctaatg
     1441 ttgctgatat aaaaactctt atatctttgc tagaaaattt aggagctaag gtcaattttc
     1501 aaaacaatag tgctttatta aacacaaaca ctcttaatca aaccatagct aaatatgaca
     1561 ttgtgcgtaa aatgcgtgct tctatactta ctctagggcc tttgcttgct cgttttgggc
     1621 attgtgaagt atctttgcct ggtggatgtg ccataggaca aagacctatt gatttacatc
     1681 ttttagcctt ggaaaaaatg ggggcaaata tacaaattaa acaaggctat gtcgtagcta
     1741 gtggaaattt aaaaggcaat gaaattcttt ttgataaaat cacggttaca ggtagtgaaa
     1801 acatcatcat ggcagcagct ttagccaaag gtaaaaccaa gctcttaaat gttgcaaaag
     1861 aacccgaagt agttcaactt tgcgaagttt taaaagacgc aggacttgaa atcaaaggca
     1921 taggtacaga tgaacttgaa atttatggta gtgatggaga acttttagaa tttaaagaat
     1981 ttagcgttat acctgataga attgaggcag gaacttatct ttgtgcaggg gctattacaa
     2041 attctaaaat tactttagat aaagttaacg ccactcatct tagtgcagtt ttagcaaaac
     2101 ttcatcaaat gggttttgaa actttgattg cagaagatag tatcacccta cttcctgcta
     2161 aagaaattaa acctgtagaa atcatgacaa gtgaatatcc aggctttcca accgatatgc
     2221 aagcgcagtt tatggcacta gctttaaaag ctaatggaac tagtattatt gatgaaagac
     2281 tatttgaaaa tcgtttcatg catgtaagtg aacttttaag aatgggtgcg gatattaaac
     2341 tcaatggtca tattgctacc atagtaggcg gaaaagaact taacgctgct gatgtcatgg
     2401 ctacagattt gcgcgcttct tcagccctta tcttagcagc tcttgcagct aaaggtacaa
     2461 gcaaagtcca tagaatttac catcttgata ggggttatga aaatttagaa gaaaaattta
     2521 aagatttggg tgtgaaaatc acaaggcttg aagaatgaaa aatatctttg aaaccttaaa
     2581 agacttagaa aatcaaattt catgtttaga tgaaagtgag cttattagcc ttgaaaaagc
     2641 aaaggataga attttagcta aagatttata cgctagaaaa aatctaccta gttttgacaa
     2701 tactgctctt gatggctatg cttttaatta tactgatatc aatgaggctt tggagattaa
     2761 agggactatt tttgcaggag ataaaaattt ttatacagtt gctaagaatg aatgctataa
     2821 aatcatgaca ggggctaaaa tgcccaaaaa tgctgatact atcttaatgt tagaagatga
     2881 gtatatagaa gaaaataaac tcatcattaa aaaaacccct aaacaataca atgcctatcg
     2941 ctacaaaggc gaagaattaa aaaaaggcga acttttgctt caaaaaggca ctaaacttaa
     3001 tgataaacat atcgccctac ttgcttctca agggctttat aaaatagaag tcataagaaa
     3061 aattcgcata ggcatttttt caagcggaaa tgaacttaaa gaaccttggc aagaatgcga
     3121 tgaagaaagt atttataatg ccaatgcttt acctttgcta accatgtttc aaaatgcttc
     3181 ttatttaggt attatcaaag ataattttaa aagcactaaa gaggctttag aaaatacaaa
     3241 ttttgatctt ttaatcactt caggaggtgc aagcgttggc gaggctgatt ttatggaaaa
     3301 agctttagat gaattaggct ttactccact ttttaaaggt ttaaaagcac gccctgcaag
     3361 acctactaag ctttatagaa aaggtgaaaa tttcgtattg attttaccag gaaatcctat
     3421 ggcagcttat ctttcttgtt ttatttttgc taaaaaaatc attaatttat taagtggaaa
     3481 cctagacaat cctttaacat tttatggcaa aatgggtatg gatttaaagc ttaaaagcgg
     3541 aagaaataat ctcatcttag gaaatttaga aaaagatatt tttacaccat ttaatgaaaa
     3601 taaatttgga tctggtatga tacttccact tattaaaagt gaatttttgc ttataagtga
     3661 agaaaatata agcgaattaa aaaaaggtga tgaaatcacg cttttaaaaa tataatgttt
     3721 gtgtttttca caaacattag cttaatttat cctcatcatc atgatcatgg atatattgtt
     3781 catcattttc caaggtatca acaaaacgcc ctatcctttc ccagcgaaca tttttatctt
     3841 tatcccaaga gaaatataca aaccaaggtt tacctactat caacctataa ggaacagaac
     3901 cccaaaaacg actatcataa gaataatcgc gattatcacc catcatgaaa tactcatttt
     3961 caggcacatc aaaaacataa gcatttccgc cgctaaaacc tatatgattt ccaagttctt
     4021 taatataagt tggagacata gcaaaatcac ctatgctaag aaagcgtaaa atatcgcttt
     4081 ctatatcttt ttttggatca taatgaatac ctttttgttt ataaggttct tttacataaa
     4141 tttgccctcc aagagtaaca agatcattcg gataatgttc tttcataaat tcatcaccct
     4201 catgcattct tacataaagt gttttatttg cataaactat cctatctcct cctgtgccta
     4261 cacaacgctt tacaaagtgt tctttttcat ttctaggatt tctaaaaaca actatatctc
     4321 ctctttgtga cccttgtgct tttatcaaat gcccatcttt attgaaatct ggcaaaacag
     4381 gaatttccaa ccaaggaata tgaggagttg ggataccata gctaaatttt ttaacaaata
     4441 aaaaatcccc taccaataag gtgtttttca tagaaccaga aggaataaca aaagcttgta
     4501 taaagaaaaa aatcaccaaa agaacaataa ctacagttcc agtccaagac tgtgaaaatt
     4561 tatataattt ctttaaaatt tccatagatt ttccctaatt aagtctattt ttagcagatt
     4621 taactgtgtt ttctaaaagc atggctatag tcataggacc tactccacct ggaacaggag
     4681 ttatataact agatttttta gatacctctt caaaatccac gtctccaact atctttccac
     4741 tttcaagacg attgattcca acatcaataa caatcactcc ttcttttacc atatccgatc
     4801 gaagtaaatt cacacaacct gctgctacta taatcaaatc agcttgccta gtataaaggc
     4861 tcaaatcttt ggttttaata tgacaaacgc ttactgtagc tccagcgttt aaaagcatag
     4921 tagccatagg acgacctact atatttgaag cacctataat aacagcgtct tttccttcta
     4981 aatcaatttc ataagccttc aaaagcttca taactccaag tggagtacaa ggcaaaaacc
     5041 cactttctaa gcctaaattt aaatatccta cattaatagg atgaaagcca tcaacatctt
     5101 tactacttat aatactttca agtattaaat ctttacaaat atgatcaggt aagggaagct
     5161 gaaccaaaat tccatgaaca ctatcatcgt gatttaaggt attaatcaat gccaaaagtt
     5221 cattttgtgt agtattttca ttaagatgat aaactaaaga tttaattcca cattcttcac
     5281 aggctttagc cttagatttt acataagttt gacttgcagg attatctcca accaagataa
     5341 cagctaaaca gctttcaatc cctttgcttt tcaaaaattg atttttttct tttaattctt
     5401 ctttgatttt tgcgcttaaa gctttaccat caagcaaagt cattattttc cttctataaa
     5461 tttaatcact tttttaaagt aaaaattgta tcatattaaa acttcattaa caaggtgaaa
     5521 ctttgaaaat tgttttaatg ttttttttat ttagtatcag tctttttggt gctgatttta
     5581 tcactcttaa agaatactct aaaatgcttt atgaaaatcc aaggggcatt agttgtaaag
     5641 aatgtcatgg aacagatgga agcgaacaaa ttttaggata ttatatgaaa aatggtatta
     5701 aaacagctta taaagttcca agtatacaaa atcttagttt tgagaatttt aaaaattctc
     5761 ttaatcagag taaagacgca aaatcaatca tgccaaatta ctctttaaca aatgatgaaa
     5821 ttgtaacttt atataattac atcaagcaat ttagcaagga agaaaaatga caaacaaaaa
     5881 agcttttaaa gaagcgtgta aattcatcgc aggtggtgta aattctccag ttcgtgcttt
     5941 tgcaaatgtt caaagtgagc caaaatttat ttctcatgga aaaggtgctt atattttcga
     6001 tatagatgga aattcttata tagactatgt tcaaagctgg gggcctttac tttttggaca
     6061 ttgcgataaa gatatacaaa aagcttgtca aaaagcactt cataaaggtt caagttttgg
     6121 agctccaact ttattagaaa ctgaacttgc caagcttgtt ttatctgatt ttcctcattt
     6181 agaaaagatc cgctttgtaa gcagtggaac agaagcaacc atgagtgcta ttcgtcttgc
     6241 ccgtggtttt actaaaaaag ataaaatttt aaaatttgaa ggatgttatc acgggcattc
     6301 tgattcatta ttagtgagtg caggaagtgg tgctgctact tttaactctc ctagttcttt
     6361 gggtgtttta gaagatgtag ctaaacacac tttagtagct aaatataatg atataaatag
     6421 cgttaaagag ctttttgaaa aaaataaaga tattgcatgt gttatcattg agcctattgc
     6481 tggaaatatg gggttagttc cagctaaaca agatttttta gaagaacttg ctaagatctg
     6541 taaaaacaat caaactctgc tgatttttga tgaagtaatg agtggatata gagcatctta
     6601 ccttggttcc tatggaatca atcatatcca agcagatata attacttttg gtaaggtaat
     6661 aggaggcggt ctacctgcag cagcatttgc ttctagagct gaaattatgg atattttaag
     6721 tcctttgggt ggagtttatc aagcaggaac tttaagtgga aatcctttag caatggctgc
     6781 aggtatagca agtcttacaa aagccaaaaa gaaaaccaag ctttatgaca aacttggaaa
     6841 attagcaaaa aaacttaccc aaggaatgaa aaaattagca gatgaaaaag gacttccact
     6901 gcaagtttgt catgtaggtt ctatgtttgg atactttttc accaaagatc ctgtatcaaa
     6961 ctaccaagat gcattaaaat ccgatctagc attattttca aaatttcaca aaaatatgct
     7021 tgaaaatgga atttatttag caccttctca atttgaaaca ggctttatat gttcaaaaat
     7081 ggatgataaa attatagata caacactaga ggctgttagg gaaagcttta aaagaatatg
     7141 agcaatattt taaaagaaga aaaaaatcac ttagaaaatt ccaacagcaa aagacaaaaa
     7201 atcattcgca aaactcttga agctgcggat ggtttaagtc ttggtatctc tatggttgtt
     7261 gctgtattta taggtgtggg aataggatat ttacttaaaa aatttactcc ttatccttgg
     7321 cttttttggc ttggagtttt ttgggggatc agtgctgcta tacttaatgt ttacaaagct
     7381 tataaagttc aagtaaaaag ctatgaagaa tttaaagaaa gagatgagtt gatcaaagaa
     7441 aaaattcaaa aagaaaagaa caaataatgg aacataaaaa agctctattt tgtatttttg
     7501 ccattattca tttatttttt tggatcatat tttcatcgtt aaatcatttt aaattagata
     7561 catttttaag ctatgaaata gcttttttta gtgttttatt gattattttt gcttcttatt
     7621 taaattataa aaaagtcatt ataaaaaaat caaaaaatta tgaaaaagat tttaatttca
     7681 tttcatcact ttttatcaaa aaaaaacaaa atttatcaaa aattattcat tttaaagttc
     7741 taaaagacga tttaaagcca aatgttaaag agaaaatcca tttttttgct atgtttttta
     7801 ctctctttaa attgatggct tatgtagtat tggttgctgg atttttattt ttacatcgcc
     7861 aagataaatt agatatcttt gcttatattt gtggaatttc atccttgcta gtttgtgtgt
     7921 ttatttttat tttatatata aaaaagtatg agtccaaaaa aaattattaa atcaatgaca
     7981 gcactttttg ctggtatggc atttttattt gcaggtaatg ccttgatagt aagctctata
     8041 ggtgttatat taaaagaaaa cggagaaagt tctttagctg ttggagtagt aagttcttgt
     8101 ttttttgtag gcgctcttat tggaaccatc agtgctcata aaattatttc tcgtataggt
     8161 catatacgct cttttgggct atttggtgct atttttggaa tttcagctat gcttcataca
     8221 gtaagcgaaa atcttatttt ttgggctgtt ttaagatttt tcataggaat ttgctactat
     8281 ggacttttaa tggtcataga atcatggctt aatgaaaaaa gcaaaaatgc cattcgatct
     8341 agaattttag gtttttatga aattgttttt tatcttgcgt ttggtattgg agttttaatc
     8401 atagcgttaa atttaagcaa acatagtgta tttatcctca gtgcaacttt aattttactt
     8461 tcatctttac ctttaaatct aattaaaatc aaagaacctg ttttacccgc atcaagtcct
     8521 atttctatac ctaaaatttt tgatatagct cctttagcta tcgtcacaag ctttatagcc
     8581 ggaatgctta taaatggctt tttttctatg gcatctttat ttatactttt gcaaggtttt
     8641 gatacaaaag cggtttctta ttttatattt tgtggggttt taggtggttt tattgcacaa
     8701 accatcatag gaactatttc agacaaactt ggtcgcaaat ttgccattat cacttgtgca
     8761 agtataggat ttatcactat gcttatattt atctttttta aacttcattt atatatgcaa
     8821 tattttttag gaattactct tggtatagga atattttgct tatatgcttt agcacttgct
     8881 agagcaaatg atgttttagt aagcaaaaat aaaggtgtag agttaggtcg tggggttctt
     8941 ttttgttatt ctttgggctc tttgtttggc cctttaattt taggtttttt aatgcaatat
     9001 tttgaaatca aaggttttat atggttttat atagtttctt tagcattttt aattcttttt
     9061 gctatcaata aaccaaatat tttaaataaa aaatttaaga aaaagcctgg aaatatggtg
     9121 atatttgatg attaatactc aactagcaag tcaaattgcc aatacgcaaa aaaatgattt
     9181 aaaagtagat aactctgctt caaaagataa aacaaattta aaagacaatc caaaagaagc
     9241 acttgcacaa gctttaaagc aaaatttagg tttaagcaag gacgctagta gtgaggaaat
     9301 actagcaaaa tttgttcaaa atgaaacagg taccaaatta aaagaacttg ttaataaact
     9361 tttagatcaa atcaatgctc aaaaaaatcc cgattcccct gtacttaaac aaggaaaaaa
     9421 tttaaattta gctcctaatt ttgctaatga attaaaaatc ttaagtacag aacttgcaaa
     9481 aagtgatact tttacacaag ttttagacag attaaatcaa attttaaaac ctgccagtga
     9541 aataaaaaac aataacttag ctcctttgtt taaaaattca ggcgtatttt tagaagctaa
     9601 attaaaagat gccctaaacg aagaattact acccaaaagt tttcactctc ttttaagtac
     9661 aatcaaaggt cttagtagcg aaaaactaag cgttcagata gcccagcttg caaatacaaa
     9721 tttaagccca aaagacactt taaaagaatt aaaaaatatt attaattcta gcaaaaatga
     9781 aaataagcaa attttaaatc aaagttcttt taaagcactt ttaaatttaa gttctaaatt
     9841 ggaaaatttt aaaaattata taagtaaaaa tcccagtcat gctcaagaaa aaatcacccc
     9901 tatagctaat aaaattttaa aagaattaaa ttccatcaaa aatgattttt tcaaagctct
     9961 taataagcca gaaaatttaa tgataaaaga tccaaacatc cttaagcaaa ctgctaccgc
    10021 ctttgaaaaa cttgaaaata ctttaaaaaa tatactaggc aatcaagctt ctaaaataca
    10081 agataaagaa aatattttag aaaatctttt aagtaacaaa gaaaatatca aagaagaaaa
    10141 acttaatcat aacacaaaaa accaagatga agaaaaatat ataaaagtat caaaagaaga
    10201 aactctcgca gatgatgcta aaaccaatat taagcaagat gtaaaaaacg aagaaaattt
    10261 acctaaaaaa gaagttaatg caaatttaga ttctagcaca aaaactcacg aagaaaatat
    10321 caaagaaaat ccaaaatttt atgaaacaaa aacagaaagc aaaacttcaa tcaatacaaa
    10381 tactaacaca aacaacacgc aaaatttaaa taattctcaa aatattcaat ctaacaataa
    10441 ccaaactatg caaaatattt ttaaaaatca ggaatttata aaacaaaata ttgtaaaaaa
    10501 tttagcattt aatgtagaaa atttagatct agaacaagtg caagatttaa gtaaaaattt
    10561 aagcaatctt tctcgtagac ttaatgaaag cttaaaagaa cttgaaccct atactcaaaa
    10621 tgccaagctt aatcaagcag aacttaaaaa tctcgaacac aaactcaatc tttctatcaa
    10681 agatctagtg caaattaaac caaaaacaga acaagatata gctgaatctt tacatcatga
    10741 tgtaaaatca acacttttgc aaatttcaaa tttggctaaa aatgaaggca atgaagctgt
    10801 atacaatcaa gctaatcgtc ttttagcgca aattgaaatc aatcagctta tgtctttagc
    10861 taatgattct atcaatactt atctgccttt ttcttgggat gatttaaatg attctaaaat
    10921 tatgtttaga cgcggaaaaa aggacaaatt ttttgctcag attaaactcg aatttgcaaa
    10981 acttggggat ttagaaattc ttatttcttt aaataat
//
LOCUS       DARGEM010000055        10943 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.055, whole genome shotgun sequence.
ACCESSION   DARGEM010000055 DARGEM010000000
VERSION     DARGEM010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.055"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..984
                     /locus_tag="SFZ78_001033"
     CDS             <1..984
                     /locus_tag="SFZ78_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG8211906.1"
                     /translation="NFASFYDLLLQVQDDDIYFDFDKDEDTYMVVNKQIIPLFTPLEK
                     IAKEFDFSLCIEPLSTKRAIKDLIIDKNDFLDKYKYLEKFGDEEDKKLYAKYDYLYYA
                     SEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADKEKGIFYHLESKNEILETT
                     IKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIKHNFKDFNIAFYGFNACDT
                     LKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKIAADIVLDAYDSGADFMVVKEEKDF
                     YLFDTCAKKLMQTSGREFEDFYILSRFEFLALIEGIQAPSLKNHTLKVSLI"
     gene            981..1364
                     /locus_tag="SFZ78_001034"
     CDS             981..1364
                     /locus_tag="SFZ78_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8211907.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1357..2040
                     /gene="rsmD"
                     /locus_tag="SFZ78_001035"
     CDS             1357..2040
                     /gene="rsmD"
                     /locus_tag="SFZ78_001035"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEG8211908.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2099..3145
                     /locus_tag="SFZ78_001036"
     CDS             2099..3145
                     /locus_tag="SFZ78_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG8211909.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNSDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3145..3486
                     /locus_tag="SFZ78_001037"
     CDS             3145..3486
                     /locus_tag="SFZ78_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211910.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3549..3746
                     /gene="flgM"
                     /locus_tag="SFZ78_001038"
     CDS             3549..3746
                     /gene="flgM"
                     /locus_tag="SFZ78_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG8211911.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3789..4223
                     /locus_tag="SFZ78_001039"
     CDS             3789..4223
                     /locus_tag="SFZ78_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG8211912.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESITPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4233..6059
                     /gene="flgK"
                     /locus_tag="SFZ78_001040"
     CDS             4233..6059
                     /gene="flgK"
                     /locus_tag="SFZ78_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG8211913.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITAGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6076..6840
                     /locus_tag="SFZ78_001041"
     CDS             6076..6840
                     /locus_tag="SFZ78_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG8211914.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6844..7608
                     /locus_tag="SFZ78_001042"
     CDS             6844..7608
                     /locus_tag="SFZ78_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG8211915.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7601..8782)
                     /locus_tag="SFZ78_001043"
     CDS             complement(7601..8782)
                     /locus_tag="SFZ78_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8211916.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8779..10338)
                     /locus_tag="SFZ78_001044"
     CDS             complement(8779..10338)
                     /locus_tag="SFZ78_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG8211917.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10328..10915)
                     /locus_tag="SFZ78_001045"
     CDS             complement(10328..10915)
                     /locus_tag="SFZ78_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8211918.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4144 a         1698 c         1579 g         3522 t
ORIGIN      
        1 aattttgcaa gtttttatga tttgcttttg caagttcaag atgatgatat ttattttgat
       61 tttgataaag atgaagatac ttacatggtt gtaaataagc aaatcatacc actttttaca
      121 cctttagaaa aaatagcaaa agaatttgat tttagtcttt gtatcgagcc tttaagcaca
      181 aaaagagcca ttaaagatct tatcatcgat aaaaatgatt ttttagacaa atacaaatat
      241 cttgaaaaat ttggtgatga agaggataaa aaactttatg caaaatatga ttatttatat
      301 tatgcaagtg aaattttaga ctatcttcct gaatatatgg gcgatggagt gttttatttg
      361 gcttcaaaaa tgatagaaaa atatcctgaa aaaaagatag aaattttaaa aactctagca
      421 gataaagaaa agggtatttt ttatcatctt gaaagcaaaa atgaaatttt agaaacaacg
      481 atcaaaaacc tacaaaatga aattttaaat ttagggcttt ttgataaaaa tattttacac
      541 tttgatttac ctaaaaccaa tgcttttgat aatgagatca aagaacttaa agaaattaaa
      601 cataatttta aagatttcaa tatagctttt tatggtttta atgcttgcga tactttaaaa
      661 tccaaactta aggctaaatt tatttcctat gaaaacagta taaaaaataa tggctttagc
      721 ttgcttaatc taaatcctac gctaagctat aaaatagccg cagatattgt tttggacgct
      781 tatgatagcg gggctgattt tatggtagta aaagaagaaa aagattttta tctttttgat
      841 acttgtgcta aaaaacttat gcaaacaagt ggaagggaat ttgaagactt ttatattttg
      901 agccgttttg agtttttagc ccttatcgaa ggcatacaag ctccatcatt aaaaaatcac
      961 actttaaagg ttagtttgat atgaaaatct ctttagaatg caaagatctc atcatagaaa
     1021 aaactttaga acttttttta aaagatcatt tggtaatgaa aaaaaattgt gatttcatca
     1081 ttagcgatga aaaaatttat accgcaaaac ccttatttat catctctaaa aactctccat
     1141 ttttaagcat accatttagc aaagaagcct tgtttgagtc tttaaatgaa tttgataatg
     1201 ccttaaaagc agcagctttg caacttgcac ttgaacaaaa aagactgctt gaagaaaaaa
     1261 ttgacgctat tgctttggaa tttaaaaaag attatgaaaa taaaatcgat cttgccataa
     1321 aagatcttaa aaacaaactc gtaaaagcac ttaatgatga atgatgaatt tataagcgtt
     1381 aaagactttt ttaatcacaa tgaaaaaaga aaaaaatttc ttcaaaaaca agaaattaaa
     1441 cctcttaaag aaaaaacaaa aaaaactaaa gaaacaaagc tttatacaaa tatagaaagt
     1501 ggtaaataca aagggaaaaa actactttta cctagtctta caacaacaag aagtactaaa
     1561 agcatagtca aaagttgtgt ttttaatgta ataagagaag atttaagaag taaaattttc
     1621 attgaagcct ttggaggaag tgctttaatg gcggctgaag cactaagtaa tcatgcttta
     1681 aaagcttatg ctatagaact tgatgtaaaa gcttataaaa ttgctttaga aaatgctaaa
     1741 aatatagatc caaatttaga agtgatccat gcaaatactt ttgaaatttt acctaaactc
     1801 atagaaaatt caaaaaatga aatcatctta tatcttgacc caccttttga taccagagaa
     1861 ggttttagcg atatttatga aaaaatttat cattttttag aaaatttaga tttaaagact
     1921 ttaaatttaa tcatttttga acaccactca accataaaaa ctcccgaaaa aatccaaaat
     1981 tttcaaaaag tcaaagaaaa gaaatttgga tcaactagct taagctttta cgcttcttaa
     2041 cttacttgga acacttcttg cttgatctat catcaacaat agattaaagg aagaatccat
     2101 gagagtttta acgatatttt tactctttat gacaagcatt tttgcagtgc aaatcaagga
     2161 tgtagcaaac actgtaggtg taagagataa ccaacttata ggttatggac ttgttgtagg
     2221 gcttaatgga agcggcgatg gaacaagctc taaatttaca ctacaatcca tctcaaacct
     2281 tttgcaaggt atgaatatca aagtagatcc taacgatatc aaatcaaaaa ataccgcagc
     2341 tgttatggtt acagccaaac ttccggcctt tgcaaaaagc ggagataaac ttgatattac
     2401 cgtttcatct atgggtgatg caaaatcttt acaaggcgga acacttttac tgactgcact
     2461 tcgtgggatt gatggtgaaa tttatgctat agcacaaggc tctatctcaa caggaggttt
     2521 aacacctaga ccaggaggag caggttctca ctcaactgct gcaaccgtaa tgggcggagc
     2581 taatgtagaa agagaaattc cacaaaattt tagtcaaaac agtgatctaa ccttaagttt
     2641 aaaagtagcg gactttaaaa ccgcaaatga tatagaaaga gttttaaata ctgtctttgg
     2701 cgaagaagta gctaaagcta tcgactctcg cacagtaaaa ctcaaaaaac ctgaagatct
     2761 ttcaaatgtt gattttatgg caagagtttt agaacaagat atagcttata aaccacaaag
     2821 caaagttatc atcgatgaaa gaacaggaac agtgattgct ggagttgatg tagaggtaga
     2881 acctgtttta atcactcata aagatatcac cataaaaata gatccaaaca ataacgcagt
     2941 agctaatcaa aatgaaatcg atatgaaaga tggtggtttt gtagatccaa gttcaaatac
     3001 cttaagaatc aacaatgcaa aaagcacagt tgcgaatata gctagaatgc ttaacaaact
     3061 tggagcaacc ccaaatgaca ttatcgctat tatggaaaat ttaaagcgcg caggtgcaat
     3121 taacgcggat ttggagatca tctaatgaaa gtggataatt ttttaaatac ttatagtatg
     3181 aatagcgctt tacttgatcg tgcagccaaa gcaagaagct tagaatcaag tattaaaata
     3241 aatgataatg atatagttac aaaaaccaaa gaagatgaag ccttaaaaga acaaacagat
     3301 gcttttgaag catttttttt aaagcaagtt ttagatgtat ctttaaaaag tcaaaattca
     3361 ctctttggaa aagatgccag tgatgaaata tactcttcca tgtataacga tactatgagt
     3421 aaagctttaa gtggaggtat gggtttttca aaattattat acgatttttt aaaagaaagg
     3481 ggttaagttt tttaaatttg ggtcgatatg gtttgtagag gattataact aagatcaagg
     3541 aggcagaaat gatcaatcct atacaacaaa gttatgtggc aaataccaca ttaaatacaa
     3601 atagaataga taaagaaact aaaacaaacg atactcaaaa aacggaaaat gataaagcga
     3661 gtaaaatcgc agagcagatt aaaaacggta cttataaaat cgatacaaaa gctacggctg
     3721 ctgcgattgc tgactcttta atctaaaact ttcattctcc ttttttttga gagagaaaag
     3781 gagaaaatat gcttaaacaa agacttgatg aagtaaatgc tatcttagca aaacttattg
     3841 ctttaaccga agaagatata gaaaatatca aagtggctaa acatgagagt ataacgccaa
     3901 gtgtagaaga aaaaaacaaa cttattgccg aatttattac agctaaaaaa caacttgatg
     3961 ttgccttggt tgagctaaat aatagctcta caaaagggct tagtgaactc ttagatgatg
     4021 aagataaaca aaaactagat ctacttaaaa aaaatcttca aaaccttcat agtaaaaaca
     4081 aagagtatgc taaatttgtt cttattgtca aagattttct tgatggctta gtaaataaaa
     4141 tgtttgatat caatgatgga acaaataatg cttatggaga taaaaagaca aatccagagt
     4201 caattttcaa gatcaatgta taaggattta taatgggtat ttttggaaca ttatacacag
     4261 gtgttacagg cttaaaggca agcgaagttc aaatcgcaac aactggaaac aatatctcaa
     4321 atgctaatgc aactttttat acacgccaaa gagtagtgca aactacaaat gggtatatta
     4381 ccgcaggtgg agttcaagta ggcacaggaa ctgctataga aagtatagtg cgtttgcatg
     4441 atgagtattc ttactataaa ttaaaaggtg catcaaacca actagaatac actaaatata
     4501 tggcttcaac cttacaagaa atcgctcagc gttttccaga cttacaaaat actggaattt
     4561 tgaaagattt agaaaattat aacaaagctt ggaatgattt tgcatctaac cctaatgaaa
     4621 atgccacaaa aatagccctt gtaaaagctt ctcagacctt aacagaaagc gttaataaca
     4681 cttttgcaac cttggataaa atccaaaaaa aagtaaatga tgatattaaa aatacagttg
     4741 atgagattaa tagaattggc gaagaaattg ctactataaa taaacaaatt tatggacaag
     4801 aagccttacc aacagaacac gcaaatgaac ttagggatag aagagatgaa cttgagctta
     4861 ctctttcaaa gctagttagt gcagttgcaa gcaaaaatga aatcaatcaa gacaatcgcc
     4921 ttgatacaac catcactgat ccaggacatc aatacaatct aagtatagaa ggttttagta
     4981 tagtagatgg aataaatttt catcctttaa agcttgatta tgatgataaa aataaatctt
     5041 atagcattta ttatgaaact cctgatgaaa aagttcgcga tcttactgca aaaattagcg
     5101 gtggacagct tggtgctcaa cttgacttac gcggtagaaa ctatagcaaa agcgaaggaa
     5161 aatatgaaga tggaattatc caaggttata tggattcttt agatactttt gctaagacca
     5221 tgatcaatga aactaacaat ctttatgcaa gttctgcgaa aagttctgtt acttctgatt
     5281 atctatctgg gcttaaggga gatattcctt tagttaatta cgacagaacc atacaaccag
     5341 gaagttttga tatagtcatt tatgatgata aaggcgataa aaaactcacc aaaaccatca
     5401 ccatagatgt aaatacaacc atgaatgata tcatgcgtca aatcaatgct aatacagatg
     5461 ataataacaa taaaaattca aacgatgatg ttgatgatca tatcaatgca agttttagct
     5521 acgatgcaaa aactggagat ggtttatttc aaatcaatgc aaaatcaggt tttaaggtag
     5581 ccattgaaga taagggcaca aatttcgcag gtgcgtttag tataggtggt tttttcagcg
     5641 gaactgatgc aagtaatatg aaagtaaaag attccatctt aaatgaccca agcacagtaa
     5701 gagcaagttt aagtggggtt gatagtggca atgacatggc aaataaaatc atccaacttc
     5761 aatatgaaaa agttaatttt tataatgaag atggcactat cgataatctt accatggaag
     5821 aatattaccg caaacttaca ggtaaaatag cctcagatgg tgaaaataac aatgtcgtca
     5881 attcaagcaa tgaaactctt tataattctg tttatagcga gtaccaatct aaaagtggcg
     5941 taaatacaaa tgaagaatta gccgccctta tacaatatca atcaagttac ggtgcagcag
     6001 caaaaatcgt ctcaaccgta gatcaaatgc ttgatacctt actagggctt aaatcttaag
     6061 ctctagtaat atcaaatgaa aaattttatc catcttaaag ctaagctcga ttttttagcc
     6121 aatcaaaaaa ataccaatca ttcccttttt gaaactccag atcctttgca aattgctaaa
     6181 attcacaatg atgaatttat tgccttaatt tgtgctttat ttgcctatgg aaatgctaaa
     6241 aatatagtaa attttctaaa gaaacttgat ttttctttat taaaccttca agaaaaacaa
     6301 ataaaaaaag aacttaaaaa tttaaaatac cgcttccaaa atgaaaaaga tatacaagaa
     6361 atttttatca ctctttcaag gctgaaaaat gaaatttcac tctacgaact tttttatcaa
     6421 gcctatcaag aaagagaaaa taccacagat gccatcttag cttttatgca aaaaatcaaa
     6481 accttaaatt catattcaag ttatggatat gattttttct ttggaaaaat ttggcaaaac
     6541 actcctactt cacctcttaa acgctataat atgtatctaa gatggatggt tagaaaagat
     6601 gaacttgatc ttggactttt taccaaaatt cacaccaaag atcttttaat tccacttgat
     6661 acacatgcac ataaaatttc cttgacttta ggacttctaa agcgtaaaat atatgattat
     6721 aaaagtgttt tagaactcac acaaaattta aaaaaattag atgcaaatga tcccataaaa
     6781 tatgactttg cactctatcg tttagggcaa agtaaggaaa ttgacaaatt taaggagtga
     6841 agaatgggtt ttgagcactt aaatacgatt tattatttca tacttttttt tgtagctctt
     6901 tttgctggtt ttatagattc tattgtaggt ggaggaggac ttattactct accagcactc
     6961 atagcctgtg ggattcctgc gcatttatcc ttagcaacaa acaaactcca aagcgtcttt
     7021 ggttctttta cggctacttt aacttatttt aaatccacca ctctacctca tcttgcttgg
     7081 ggtgtttttt tcacagcctt aggagcagct ataggaagtt atagtgttct ttttgtaaaa
     7141 gatgagcaat taaagcttat tatcttaatc tttttaactc ttaccttctt atatacagcc
     7201 ttacgtccca acttaggcaa acacgaaagc gaacctaaaa taaaaaatat caaaattttt
     7261 catttaattt gtggcttaac tttaggattt tatgatggat ttttagggcc tggaacgggt
     7321 tcattttgga tttttgcttg tgtgatgcta ctaggtttta atatgagaaa agcgagcatt
     7381 aatactaaaa ttttaaattt cacaagcaac atcattgctc ttgctatatt tttatggcaa
     7441 tatgaacttt tatgggctgt aggtttgctt atgggtgtag gacaagtttt aggagcttat
     7501 ttgggttcaa aacttgtgtt aaaaactaat ggaaagttta taaaaacttt atttttaatc
     7561 gttgtaggag ctactattat taaagtagct tgggattatt ttagttaaaa ttgacccctg
     7621 agctaagctc ccacataggt aaaaatatac ctaaagccaa aaacaaaact aaaagcgcta
     7681 caaataaagt catcataggc tctaaaaaaa tcaaaaatct atccatcaaa ttttcgcttt
     7741 tttgttgata atatttggca atttcttcac ttaatacttc aagtcttcca cttttcatcg
     7801 caacactaag catagaaaac accaaagaat caaaaatatc aatcttttta aaagcctgac
     7861 ttaactcaag accagaatct ataaaactaa aaagtttttt atactgaaaa attaaaaatt
     7921 tattttcaag ccctataata gctaaatcaa aagctttaga tattgaaatt ccatttttta
     7981 aaagcaaaga aaaaaccata aaaaaataat aattttgatt ataaataatc aaacgagaaa
     8041 tcaaaggtac ttttaaaaat aaaaaatcgc aagaaaaagc aaaagaatga aaatttttat
     8101 aagctaaaat aagcataaca ataaaaataa caaacaaaaa tatgcaaaaa attccatagt
     8161 catctaaaaa attataaatt tctaacatta catgcgtgat aaaaggcaaa ctcgcgccta
     8221 aattttcaaa taaatcttta aaattaggca ctacaaaaag cattaaaaac aaaaatgctc
     8281 cgataatact taaaaaaacc aaagtaggat atctaaaagc cttttttaat tgtttttgac
     8341 tctctaagct tttttctcga agtttagaaa tttgactaaa cacttcactg atttttcctg
     8401 tcttttcagc cgttttaatc aaagctaact ccgcacgatt taatccaaaa ttagcatttt
     8461 caaaagcttg atttagattt tgggctaaaa ttaaattgtc taatattttt ttcataatct
     8521 tgcaagagtg cataagatat aattctctaa tcgcttcttg aacacttaat ccaacttcac
     8581 acaacaaagc tagctcttta aaaaagagta taaaattttc atcttttaat ctctgaaaat
     8641 tagatttttg aatttctttt atatcaatga ttttccaatt ctttgataag gcttttgctt
     8701 gtgctgtatt taaattttca gcttttatag tttttgtata attttgattg tttttaagaa
     8761 attccacttc ataaaatttc atcttacaac ccttaaaagc tcatctatac ttgtaagacc
     8821 ttctttggct ttttttaaac cttgttcaaa catagtttga aagccatatt tttttgcaag
     8881 ctccattaaa atcgttttat cttgattttc cctaattgca caagataaat cttcattgat
     8941 ctctaagcac tcagcgatta attctctgcc aaaaaatcca ctatgatgac aacgctcaca
     9001 tccttttggt tcaaaaaatt caccttcaaa ttcaatataa tgttttttgc ttttttgctt
     9061 acaccaagga caaagttttc taaccaaacg ctgtgctata acaagactca aagccgatgc
     9121 tatcaagtaa ctttttgctt gcatatccaa aagcctatca atggtactaa gagcatcatt
     9181 agtatgcaag gtgcttaaaa gcaaatgacc tgttaaagaa gctttaagtg caatatctaa
     9241 actttcttca tcgcgaattt ctcctatcat gataatatca ggatcttgcc ttaaaattgc
     9301 tcttaaaaca ctattaaact cgactccaac ttttgaattg agcaaaattt gctgcactaa
     9361 aggaatttta tattctatag gatcttctgc ggaaataatc tttttttcaa tacttttcaa
     9421 ctcatttaaa cacgcgtata aagttgtgct tttaccacta cctgtaggac cggttaataa
     9481 aatcattcca ttgggacgat gtaaaatctt ttttaaaatt tctaaatttt tatttccaag
     9541 atttagttta tacaaatcca aaatttcttt atcatgtttt aaaattctta taacaacact
     9601 ttcgccataa atcaaaggca aacatgaaac acgaaaatca tatctttcat tttcaaaatc
     9661 taattcaaaa cttccatctt gtgtttttct tgattcagct aaattcaaac aagctaaaaa
     9721 tttgacatga aaaaccaaag cttcataaat atccttctca aaaatagcaa attcacgcaa
     9781 aattccatca accctaaacc taatcaaagc atcatcattt cttgcttcta tatgaatatc
     9841 actcgcatga aaagataaaa tttcatgtaa taaaaaatca aaaatttgac tgatgcaact
     9901 ttgatcatct cttttgtgat tttcttgcca ttcaagtcta agcttaatgc ttaatctttt
     9961 aatctcctct tgaatgcgaa tttgatttaa aattttagct atctttaatt catcggcaat
    10021 tgcagtgtcg attttttcac aaatcataaa agtcttaact tgctctaaaa gctctaaaga
    10081 acaaggtttg gatctaataa tcataaagcc gtcattgttt ttaataagca gaaatttaaa
    10141 ttttaaaagt aaagaaaaag gtataccttc ataaataaaa tcattatctt catctaaatc
    10201 aacaaaatgt aaattacaaa aatttgctaa tttgttaaaa aaatcccaag aagtgatatt
    10261 aaatttagtg caaatttcat caagacttat ttcattatca atataagctt gaaaaatttt
    10321 atccattcta ctttccatct aattccatta aaccataata atttatataa gcatctaaag
    10381 cactttgagc ttctttttct tcgcctaaag ctcttttagc ctgagcaaaa atcagccaag
    10441 aatcttgttt ttgcttgtca agttcattgg cttttaaagc ccaaaatatt gtcttttgat
    10501 aagctttaat atcaaaatac ttcttagcta aatttaatgc cttttcatag cttggatttt
    10561 gataaaaaga tttttttaaa tcagaaatat ttaaaatttt agaatcaatt tctatcttgc
    10621 taatatgtgt attttcctgc accgctttaa cttcttctag ttctttatat aacttttccc
    10681 tagaaatctt atttttttct tgtaaaattt gcgcttgaag aatcttttgc tccaaatgct
    10741 ttttatgttc aatagcctgc aaataaatat ttttttgctt attatatttt tgcattaaca
    10801 caaaaaaaca aaatgctatt actgatatta gaataattaa taataaatat tttaaatatt
    10861 ttttaagtaa aaagtattta tacctaagct caagctcttt aattctttct tgcatatctt
    10921 accttaataa gccattctct aaa
//
LOCUS       DARGEM010000056        10932 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.056, whole genome shotgun sequence.
ACCESSION   DARGEM010000056 DARGEM010000000
VERSION     DARGEM010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10932
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.056"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..455
                     /gene="mog"
                     /locus_tag="SFZ78_001046"
     CDS             <1..455
                     /gene="mog"
                     /locus_tag="SFZ78_001046"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG8211919.1"
                     /translation="VLNSYIKNDIIYHKELIPDDYDLIIKKLLYLADEKKCDLIVTSG
                     GTGPALRDVTPEATEAVCDKMMPGFGELMRLESLKYVPTAILSRQSAGIRNKSFIINL
                     PGNPKAIKECLEPVFPAIPYCIDLIEGAYIEANDEVIKVFRPKKKCQN"
     gene            complement(452..637)
                     /locus_tag="SFZ78_001047"
     CDS             complement(452..637)
                     /locus_tag="SFZ78_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG8211920.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            765..1952
                     /locus_tag="SFZ78_001048"
     CDS             765..1952
                     /locus_tag="SFZ78_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8211921.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILSNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMEKLNDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            1949..2764
                     /locus_tag="SFZ78_001049"
     CDS             1949..2764
                     /locus_tag="SFZ78_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG8211922.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKLTNMRYDKK"
     gene            2777..3247
                     /locus_tag="SFZ78_001050"
     CDS             2777..3247
                     /locus_tag="SFZ78_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG8211923.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFHS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIKLQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            3286..4035
                     /gene="flaC"
                     /locus_tag="SFZ78_001051"
     CDS             3286..4035
                     /gene="flaC"
                     /locus_tag="SFZ78_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG8211924.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            4071..4703
                     /locus_tag="SFZ78_001052"
     CDS             4071..4703
                     /locus_tag="SFZ78_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG8211925.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(4716..8318)
                     /gene="dnaE"
                     /locus_tag="SFZ78_001053"
     CDS             complement(4716..8318)
                     /gene="dnaE"
                     /locus_tag="SFZ78_001053"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG8211926.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTGEYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            8547..8753
                     /locus_tag="SFZ78_001054"
                     /pseudo
     CDS             8547..8753
                     /locus_tag="SFZ78_001054"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rdx family protein"
     gene            complement(8766..9095)
                     /locus_tag="SFZ78_001055"
     CDS             complement(8766..9095)
                     /locus_tag="SFZ78_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG8211927.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(9092..10432)
                     /locus_tag="SFZ78_001056"
     CDS             complement(9092..10432)
                     /locus_tag="SFZ78_001056"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG8211928.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(10456..10869)
                     /gene="uraH"
                     /locus_tag="SFZ78_001057"
     CDS             complement(10456..10869)
                     /gene="uraH"
                     /locus_tag="SFZ78_001057"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG8211929.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         3755 a         1849 c         1497 g         3831 t
ORIGIN      
        1 gagtgttaaa ttcatatata aaaaatgata ttatttatca taaagaatta atccccgatg
       61 attatgattt gatcattaaa aaattacttt atctagcaga tgaaaaaaaa tgcgatttga
      121 ttgttacaag cggaggtaca ggtccagcac ttcgtgatgt aaccccagaa gccacggaag
      181 ccgtgtgtga taaaatgatg ccaggttttg gagaacttat gcgcttagaa agtttaaaat
      241 atgtcccaac agctatactt tcaagacaga gtgcaggaat tcgcaataaa tcttttatca
      301 ttaatttacc aggaaatcct aaggctataa aagaatgcct agagcctgtt tttccggcta
      361 taccttactg tattgatttg atagaaggtg cttatataga agcaaatgat gaagttatta
      421 aggtttttcg ccctaagaaa aaatgtcaaa attaaaattt attagctctg ataagtctgc
      481 ttaattgtct agcaagcaga cttgccgaag cttcatcttt gcttatcttt tgcactttat
      541 ttttaaactt acaaagtctg tcatctaaaa tcacatcatt gattggaatt ttaggctttt
      601 ctttttgttt ttgtgaaatc tttttcttaa aaaacattct ttaatccttt ttttataaat
      661 atacaccaac ttagttgaaa agaatattat tttagatttt aaactattaa ctttatttca
      721 ttattttaag ctagaattcg caaaaaacca atcaaggaaa aataatgact ttaattgcaa
      781 ttttatgtct ttacacagca cttttatctt ggatttccta tgctcaaatt cgtttcttag
      841 aaagagaaaa agacaaacaa gctcaaattt taagcgaaaa agactatcaa aatgcagcag
      901 atattgccat cgaaaatgaa aaatttaaac tattttccaa tttttataat ttaatcatca
      961 atattgcatg gataggtttt ggatttttat atcttaaaga attgcttatc ttaagcaaca
     1021 ctcgttttga aaatacttta tttttattat cttttttaat aatcacaagt attttaaatc
     1081 tacctttaag tatttatgaa agttttatca aagataaagc ccatggtttt tcaaatatga
     1141 ctgtaaaact ttttatcaaa gacactatga aaagtcttat tttaacttta atatttggat
     1201 ttttaatcct ttatgctttg cttttttgct atgatttttt tggaactttt tggtggattg
     1261 cggcctttat ttttgccttt tgcattatag tgattataaa tctcatctac cctaccttga
     1321 tagcacctat ttttaataaa atggaaaagc taaacgatga aaatttgctg aaaaaaatca
     1381 gctctttaat gaaacaatgc gggtttagtg caaatggggt ttatgttatt gatgcaagca
     1441 aaagagataa gcgtttaaat gcttattttg gtggactttt taaaagcaaa agagtggtgc
     1501 tttttgatac attattaaaa gccttaaatg aaagagaact tttagctgtt ttaggacacg
     1561 agcttggaca ttttgttcat aaggatatta tcaaagcttt atttaacggc gctataacta
     1621 tgtttttact tttttttgtt tttgcaaatt tacctgaatt tgtttactta gaaagtcatc
     1681 tagaaggagt aaatggtggc gtgtttgctc ttttgtttat cttggcgaat atttttagct
     1741 ttttaatctc tcctatgctt aatgccttaa gtagaaaaaa tgaatttgca gctgatcaac
     1801 acggagctaa agttacaagc aaagaagata tgaaaaatgc attgatagct ctagcaagag
     1861 aaaataaagc ttttatcaaa acaagtaaaa tatatacatt tttttatctc agccatccaa
     1921 gtattagtga tagaatcaag gctctttctt gactataaaa aatgctctta tggaagctaa
     1981 atctagctta aaaggttatg aaaatgaagc agtatttata ctctgtgaat atctaaaaaa
     2041 agataaagct tggttatttt taaaccaaga tatacaaata gatcatgaac cttattttga
     2101 gcttataaag cgttttaaat ctggagaacc ttttgaatat atatttgaaa aagtagattt
     2161 ttggggatta gaatttaaga taaaaaaagg tgttctaatc cctcgctacg atagtgaaat
     2221 tttacttttt caaattttaa atttatgcaa aaaaaatact tttaatggga ttttagaaat
     2281 aggatttgga agcggaattt taagcattgt tttagccaaa gaacttgggt taaaaatcac
     2341 agcctgcgat atcaatccca aagccttaga attagcttta gagaatgcca aattacacaa
     2401 agtcgatcac ttgattgact ttaaactttg taattttaag caaattaaag aaaattatga
     2461 ttttattttt tcaaatccgc cctatattaa aaattcatat cctatagata tttgggtgca
     2521 aaaagaaccc aaagaggctt tatttggcgg agaaaaagga tatgaaattc tagaagaaat
     2581 catacatttt tcccttgata aaaaagttaa atttttagct tgcgaatttg gctatgatca
     2641 aaaagaaatt ttggaaaaaa ttttatatca aaataatttc attgttgatt tcttcaaaga
     2701 tgaacaagat tataatcgtg cttttatagc taaattaaca aatatgcgtt atgataaaaa
     2761 ataaaaggag aaactcttga aagctgttaa tttattttta cttgcctcca tcataggggt
     2821 tgaactcata ctaggaatag ttgttgcacc aacaattttt tttcctcaaa atcttatagg
     2881 agaaggagtg ttgagccatt ttcacagtgg cttaatgatg acgcaaattt ttattaaaat
     2941 gggatatttg ctgatttttg tttcagtggt taatttttta tatgaaattt attctcttat
     3001 aaaagatgaa atgaaatttc aaataaaatt ttcaaaattt atgctgagtt tgcttatttt
     3061 gattttaagc ttaatatttg ttttttattt tactaatacc ataattaaac tccaaaactt
     3121 aggcgaaaac gctacaaaaa ctcaagaatt tatcagtatc cataatgcaa gtgaagtggt
     3181 gattaaaatc atcttaataa tgcaagtttt tttatatttc ttaagcttta aaatagcaaa
     3241 aaaatgataa aatattaaat aaatccaaaa gagaaggagt aggccatgat gatctctgat
     3301 gcaactatga tgcaacaaaa ttattattta aataatgcac aaaaagctag cgataaagct
     3361 ttagaaaata ttgcagctgt tcgcgcaata agtggagttg atagtgctaa tttagctatt
     3421 gctgattctt taagatctca atcaagcact atagatcaag gtgtcgcaaa tgcttatgat
     3481 gctatagggg ttttacaaat tgcagatgct agccttacca atatctctca aagcgcagat
     3541 agacttaatg aactttcagt aaaaatgaac aatgctgcac ttaatgattc tcaaaaagga
     3601 atgctaagaa cagaagcaac acgcatacaa gaatccatca atgattcttt taataatgca
     3661 acttataatg gaaaaaatgt ctttcaaact atgaattttg tagtaggtag cggaactgaa
     3721 actacaaatt taaatccatt agcaacaggt ggattaagca tagataatca agatagtatt
     3781 acaaatttta tggatcaact tggaagttta agaagtgaaa taggctcagg tatcaatgcc
     3841 attacatcaa atattaatgc aagtgttcaa aatagcatca actcaaaagc agctgaaaat
     3901 aatttactaa ataatgatat ggcaaaaaat gttaatgatt ttaatgccaa ttatctaaaa
     3961 gaaaatgctg ctgcttttgt tgctgcgcaa tccaacatgc agcttcaaag caaaattgct
     4021 aatttattac aataatataa gccctaaata gggcttattt ctttatcaaa atgactttag
     4081 agcaaatttt agaaaaaacc aaaaacgttc gtcttgtagc cgcaagcaag tatgtcgatg
     4141 caagtataat tgaaaagctt tttgatcaag gtatagtaga atttggagaa aatcaagtcc
     4201 aagctctagc acaaaaaaaa gaaaatcttg atgaaaaaaa actagacata aagtggcatt
     4261 ttataggaac gctacaaagc aacaaaatca atctcttaat caaacaaaaa cctatattat
     4321 ggcactcttg caatggtatt aaaatagcta aagctatgga caaaagactt gattataaat
     4381 taaatacttt attagaaatc aatagtgcaa atgaaaatag caaaagcggt ctagatccaa
     4441 atcaagctgt agaagaatat ttacaaatac aagaagagtg ctctaatcta aatctttgtg
     4501 gcgtaatgag tataggctca cacagccaag ataaagaaag tattataaaa agctttgaaa
     4561 ctacatttaa aatttatgaa attcttcaaa aacatggggc taagatttgc tctatgggga
     4621 tgagtaatga ttttgaaatt gctataaaat gcggatccaa cttggtaaga ctcggaagca
     4681 ttttatttaa aaatcttaag taagaacaat cttacttaag catatttatt agaaatttcc
     4741 tctactatac tatcagagat aataaaatct gtatgataaa gcaagcaaga ccccgcacta
     4801 ataactttta aaacaagttt tttattattt ttttcattag gattatgtgc atttctagca
     4861 atttcatgaa tttcatagat taattctcta ttcaatcttg tcaaatctag ctctatgata
     4921 tttttttcaa attccttagg ttctgcggta aaatgatttt cttctttatt tttaaaatct
     4981 ttttttgctc caaatttttt tatagcttta atctcgccat cttcaagact ttgcaaatct
     5041 ttaattgctt ttaaaaaaaa gctaggcttc tcccctccct cagctttaaa tcccaataca
     5101 aaaccatagg cattattttt taaattttca tctttgatga tgttttctat ttcttccaca
     5161 ttgctttcaa atacagtagc atcaaacgaa gaataataat ccaaaatttc aattctacca
     5221 taacgcttat tatttttact catcatggat ttgaaatctt caattttacc tatacttaaa
     5281 atttctccat tgttttttaa actttcaaaa tctaaacttt taacataatc tatggcatta
     5341 atttgttcat aaaatcgatc taaaggatgg cctgaaacat aaattcctaa aatttctttt
     5401 tcatatccta atttttccat cacttcaaat tcttcatttt tgggagtaaa atttacttga
     5461 acacctgaag ttaattcctc ttcaccaaaa agagaacttg cagcattttt tcttacttca
     5521 gccattttac gcgatgcttc gctaagattt tccatattat caaacaaagc ttttctagta
     5581 aaaccaaact catcaaaagc ccctgcctta ataagacttt ctaatgttct acggtttatt
     5641 ttggtaggat ctatcttacc taagaaatca ttaatatcct taaattctcc atcttgtctt
     5701 gcttcaagta aattttcaac tgcaggaata cccacacttt ttatagctcc aagtccgtat
     5761 ataatagcat ccttgccatc ttgctctaaa gcactaaatt cacggatcgc tttgttaatc
     5821 gatggaggta aaagtttaat attcattttt ttcatctcat caatataaac agcaatttta
     5881 tccacattgt tttcttcgct tgttaaaagt gctgccataa attcactagg ataataagtt
     5941 tttaaataag ctgtttgaaa agtaatcaac gcataagccg cagagtgaga tttattaaaa
     6001 ccatatcctg caaattttac gataagctcc cataaatcct cagcttttgc tctatcatat
     6061 ccttgttttt ctgctccatc tgcaaaatca gttttaagct ttttcatctt ctcaggatct
     6121 tttttaccca tagcacgacg cactacatca gcacctccta aagaaaagcc acctataatt
     6181 tgaacaattt gcataacctg ttcttgataa acaataaccc cataagtagg ttctaaaacc
     6241 ttttctaaac tgtcaaaagg atattctata ctttttaaac catgctttct gtcgataaaa
     6301 tcatcaagca ttcctgattc catagggcct ggacgataaa gcgcaagaac cgcaatgata
     6361 tcttcaaaac gctctggttt taagcgtgca tttaaacttt gcataccgcc tgattcgatt
     6421 tgaaaaattc ccaaagtatt tccactttgt atggttttat aaactttgct atcatttaca
     6481 tctatagttt cccaaataat gtctttattg taacgctttt taataagctt gatcgcatta
     6541 ttgattactg ttaaggtttt aagacctaaa aagtcaaatt ttatcaaatc cacatcttct
     6601 aaatgatctt tagaatactg cgttaccaaa tgtctttcat catttttact ttgtctaaaa
     6661 agcggagttt tcttccataa actttcatta gaaattacaa cacctgctgc atgcataccc
     6721 gcattgcgat ttaatccttc taaagctctt gcatactccc aaacttcaag acctttagga
     6781 tgacgatcga taaattcttt gattttaggt tctttttcat aagcagcatc aagagtgatt
     6841 ttaagctctt caggcacaag tttagcaagc tcatcagcat cttgaatact catatcacaa
     6901 actctagcca catcacgaat caccccttta gccaaaagtt taccaaaggt aatcacctgt
     6961 gcaaccttat ccgctccata tttatcaatc acataatcaa tcacttcagc acgtctgtct
     7021 tgacaaaaat ccacatcaat atcaggcata ctcacacgct caggatttaa aaaacgctca
     7081 aaaagtagac tataaggaat aggatctaaa tccgtaatcc ttaaacaata agaaaccaaa
     7141 cttcctgcag ctgatcctct tccagggcct actggaatac ctttatcttt agccacttta
     7201 ataaaatcat gaacaataag catataacct gaaaatttca tatttttaat gatgttaatt
     7261 tctacttcaa gtctttgttt gtattcttca tgcttgcttt catcgataaa ttttaatctc
     7321 tcttcaagtc cctttttaca aagttcttca aaaactatgt catcattatc aaagctaaat
     7381 tcttttgttt cttcaggtaa gataatatta tgatctttag catattctcc tgtaaattta
     7441 aaattcggtg gagtgggatt gccaagatta agctctaaat tacatttttg cgcgatttct
     7501 tgtgtatttt ctatagcttc tggaatatct gcaaaaagct cactcatttg ctcagggctt
     7561 ttaacataaa attcatgcac actatgacgc attctatcag gatcgttaag tttttttccc
     7621 atggctatac acataaaaac ctcatgggca gccgctcttt ctttaaaagt ataatgcgta
     7681 tcatttgtag caatgatttt tatatttaat tctttagaaa gtctgataat atcatcatct
     7741 atcattcttt gatcgcctat accatgacgc atgatttcaa aataaaaatc atctttaaaa
     7801 acttttttat accataatgc cgcttctttt gctgcttcat agccttttgc accaaaacgc
     7861 acatttcttt cactataagt atttaagtgc caatttactt caccttgcaa gcaagcagaa
     7921 gagcaaataa gaccttcgct atgatcttcc aaaagctttt tattgatacg cggataataa
     7981 tacaaacctt taatataact ttgagaactt aaatacatta aattttgata tccgatctca
     8041 ttttttgcat acaaacaaag gtgaaaacgc tgacgagaac ttttatcatc taattcatcg
     8101 tgattatgta aatacgcttc cataccaatg ataggtttta aaccttgtgc tttcattgtt
     8161 tgatagaaat caattgcccc aaacatattt ccatgatctg tcatagccac acttgtagca
     8221 ccctgctctt ttaaagtcaa agctaattct ttaagcttat tggctccatc aagcaaagaa
     8281 tattctgtat gtaaatgcaa gtgtgtaaat tgactcattt tcttccttta gttttttaag
     8341 gcttattata attttgataa aaattataaa tttttctcgc tgaatttgaa agaaattgac
     8401 cctaaatttc aacttaaatt ttacaaaaag gcaaaaattc agccaaaata aactataata
     8461 aaatctaaga ttttaatctt aataaaaaga acttctcaaa ggatgaaatg atgaaagtaa
     8521 aaattgctta ttgcaatctt tgaaattatc gcccacaagc tgcaagggtt gcagaagaac
     8581 tacaaagcga tttcaaagat gttgaagtag aatttgaaat tggcggcaga ggtgatttta
     8641 tcgttgaagt agacggaaaa gttatcttct ctaaagcaca acttattaat tgcgaaagtg
     8701 aaagatttcc atatcaaaat gaaattaatc aattaataaa aaatagagtg taatcaaaca
     8761 ctctatcata acattttctc atattcctta ccaatatata tgttttgctc atactcgata
     8821 ataggacgct taatacaact tggattttcc aatacaattt tttcaagttc tttttcattt
     8881 aaatttttaa ctttttcttt gtttaagcca agttttttag aagttaatcc agcagtattg
     8941 ataagttctt caaaagattt ttgttttaac catgtgtata aaatatcttg attaatcttt
     9001 ttaatatcca taaaatcaaa cacaatacct ttttgtgtta aagcatccat agctttcttt
     9061 acagaattgc aatttttaat accataaagt ttcattttct agcctttttt accaaatctg
     9121 cgattaaaaa agcaagttct aatgcttgat ccgcattaag tcttggatcg cattgagtct
     9181 cataacgatc ttccaagctt tgagcagtaa cattgcttgc accacctgtg cattctgtta
     9241 catctttccc agtcatttca agatgcactc cacctggata aaccccttcg cttattgcaa
     9301 tctcaaaaaa agatctcact tcttgcataa ttttatcaaa ctcacgtgtt ttaaaattgc
     9361 ctgcttttac cgtatttcca tgcataggat ctatgctata tactaaattt aaaccttcac
     9421 ttttaagttt agagaaaatt tttggcaaat tattgataat tttatctgca cccatgcgga
     9481 taataatatt taatcttcct tcttcattat ttggatttaa aacatttgct aaagctatga
     9541 tatcatcagc acttgcacta ggtcctattt taacccctaa aggatttttt actccactta
     9601 aaaaatgcac atgagcttca tcaagcgccc ttgttctttc acctatccaa agcatgtgag
     9661 ctgaacaatc gtaaatttct ccacttaaac tatccactct agttaaagct tcttcataag
     9721 gcaaaagtaa agcttcatgt gaagtataaa cactaacttc tcttagactt ggagtattac
     9781 ttgtattaat tccacaagct tccataaaag ctaaagcttg tgaaattttt tcactaatat
     9841 cagtatattg cttatggagt tcactctttt ttaaaaagcc caaattccaa cgatgtactt
     9901 catgtaaatc tgctaaacca cccttagcaa atccacgcaa caaatttagc gttattgcgc
     9961 tttgataata agcttcaagc attctatgtg gatcaggaat gcgtgcttgt tcactaaatt
    10021 caaaaccatt aataatatca ccacgataac taggaagact tataccatct aactcttcaa
    10081 aatcactact tcttggcttg gcaaactgcc ctgcaatacg accaattttt ataacaggac
    10141 atccaccagc aaatgtaagt actatagcca tttgaagtaa aattttaaac atatcacgga
    10201 tatttacagc gccaaaattt tcaaaacttt cagcgcaatc tccaccttga agtaaaaaag
    10261 cttctttttt acaaactctt gctaaagact tttgaagatt tctcacttct ccagcaaaaa
    10321 ccaaaggagg aagtttctca agtcttgcta aaactctatt catttcctct tgatctggat
    10381 agataggttg ctgttttata ggatagtttt tccaagaatt cttagcccac atggtttttt
    10441 ctttcgtttt atttatcagc ttcctctata agttgaataa ccaaaaggag aaagggttat
    10501 tggaacatga taatgtttct gatctttaga aagctcaaaa cttacctcta caaaaggata
    10561 aaaagtattt attttgtgtg atgtgtaata gtcttttgta aaaaatttaa gcttataaat
    10621 tccaaaagcc ctattttcag ctttttcata tggtaataaa tctcctattc taccattttc
    10681 ttcggtaaat tcttcactta cttttttcca ctgttgattt gcttccaact tataaagctc
    10741 aacttttact ttaggagcag gttgtccaga agtaatatcc aagacatgag tacttaattg
    10801 atattcagta gcactcaaaa acattggcac gcttgctagt attaataaag tttttttaat
    10861 agaaaacatt ttctctcctt gtataatatt tacaaggaat attatacaag agtattatta
    10921 ataattaaaa tc
//
LOCUS       DARGEM010000057        10676 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.057, whole genome shotgun sequence.
ACCESSION   DARGEM010000057 DARGEM010000000
VERSION     DARGEM010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10676
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.057"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            123..1511
                     /gene="ftsA"
                     /locus_tag="SFZ78_001058"
     CDS             123..1511
                     /gene="ftsA"
                     /locus_tag="SFZ78_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG8211930.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            1527..2639
                     /gene="ftsZ"
                     /locus_tag="SFZ78_001059"
     CDS             1527..2639
                     /gene="ftsZ"
                     /locus_tag="SFZ78_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG8211931.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            2795..3607
                     /locus_tag="SFZ78_001060"
     CDS             2795..3607
                     /locus_tag="SFZ78_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG8211932.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNS
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            3636..4427
                     /gene="flgG"
                     /locus_tag="SFZ78_001061"
     CDS             3636..4427
                     /gene="flgG"
                     /locus_tag="SFZ78_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG8211933.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(4494..5924)
                     /gene="glnA"
                     /locus_tag="SFZ78_001062"
     CDS             complement(4494..5924)
                     /gene="glnA"
                     /locus_tag="SFZ78_001062"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG8211934.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            6127..6822
                     /locus_tag="SFZ78_001063"
     CDS             6127..6822
                     /locus_tag="SFZ78_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG8211935.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            6819..8072
                     /locus_tag="SFZ78_001064"
     CDS             6819..8072
                     /locus_tag="SFZ78_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG8211936.1"
                     /translation="MIIPEIVAPAGNFAKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            8073..8567
                     /gene="purE"
                     /locus_tag="SFZ78_001065"
     CDS             8073..8567
                     /gene="purE"
                     /locus_tag="SFZ78_001065"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG8211937.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            8577..9113
                     /locus_tag="SFZ78_001066"
     CDS             8577..9113
                     /locus_tag="SFZ78_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG8211938.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            9125..9988
                     /gene="glyQ"
                     /locus_tag="SFZ78_001067"
     CDS             9125..9988
                     /gene="glyQ"
                     /locus_tag="SFZ78_001067"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG8211939.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            9975..>10676
                     /locus_tag="SFZ78_001068"
     CDS             9975..>10676
                     /locus_tag="SFZ78_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG8211940.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVS"
BASE COUNT         3785 a         1399 c         2042 g         3450 t
ORIGIN      
        1 tttgaacaat acaaaactat gcttgaacaa aatttgcaaa atttaaaagc aaatgagctt
       61 aagcaagaac ttgttgatga acttaaaaag atatatccga taaaaattta ttataaaggg
      121 aattgatttt gaatatatta ggaattgact taggctcaac ccagacttgt gccattattg
      181 ctcaaaaaga tgaagatgga ttaaaaatta ttggtttttc caagtcgaaa accaacgggg
      241 ttaaaaaagg tgccattacc aatatagagc ttgcttctaa atctattgaa gaggctgtta
      301 gaagtgctga gatgatgagc ggagttcatt atgatagggt tgtggtgtct atatcaggtg
      361 cttatactaa aagcgttgat agcataggtg ttgttaatat tccaaatcat gaaataggca
      421 ttaaagaaat tcatcgtgct gtaagtacag ctaagcatac tgccaatcta ccaagtggtt
      481 atgaaattat ccatgttttg ccttataatt ttaaggttaa tgatcttgaa catgttgatg
      541 atcctttggg aatgagtggt aatcgtttag aagtttcaac ccatatagtg atttcacaag
      601 aatctcatat taaaaatctt aagaaagcag ttgaattagc tgatttaaga gtggataata
      661 tagttctttc aggatatgct tcagctatag cttgtttaga tgatagcgaa aaggaattag
      721 gtgctgtttt gattgatatg ggtggagcga tttgtgatat ggttgttcat actggaaatt
      781 caattagata taatgattgt ttgcaaattg gctcgattaa tatcacccaa gatttatcaa
      841 tggcattgca tacaccttta aaagaagcag aaaaaatcaa gcttaattat gcagctcttt
      901 cacaacagcc taataccctt atacaaattc cttcaatggg tgatgaaaga aaagttaatg
      961 aagtttcttt ggatattatt tcaaacgtaa tttatgcaag agcggaagaa actttgatga
     1021 ttttggcaaa aatcttaagt gataatcgtt atgccaatgc tataggtggc ggagttgttt
     1081 taacaggtgg aatgactaag ttagcaggta ttgatgagct agctcctgca acatttgata
     1141 atcgctcagt tagactggct actgcaagaa aagatttgat tactggtttt agtgaaattt
     1201 ttaatgatcc tgaaaatact tgtgctatag gactttgttt atatggagcg ggatatttta
     1261 cgccttatga acttgattct aatgagaaat taagatataa aggggaaatt gaaaatttta
     1321 atcgtcaaat taaacaagat attgttttgc aaaaagatac agaaagtgaa ataaaatctg
     1381 atttttttga tgaaaatttg caagaaaatg atacaattgc aatacaagaa caattagatt
     1441 ttaaagagcc aaaagaaaaa aaacctagtg ttttttcaaa tatctggcat aaaattatga
     1501 atcaatttta acaaggagaa atttttatga gtgaattttt agtagaagaa atgcaacata
     1561 ataaaggtgc aaaaattaag gttataggct gcggtggcgg tggcggtaat atgattaacc
     1621 atatggttaa aatgggatta aatgatcttg atttaattgc agcgaatact gatgcacaag
     1681 ctatttcaat ttcattagca aaaactaaaa ttcaacttgg cgagaaaaaa actaaaggtt
     1741 tgggcgctgg tatgcttcct gaagtaggtg cagaaagtgc tagagaaagt tttgaagaaa
     1801 taaaagcaag tcttagtcaa agtgatattg tatttattgc ttcaggtttt ggtggaggta
     1861 ctggaacggg tgccactcca gttattgcac aagcagctaa agagattgga gctttaactg
     1921 tttctgttgt aactatgcct tttgcattcg aaggaaaaca aagaaaaaaa cttgctgaaa
     1981 gcggtctcct tgagcttaaa aaagaaagtg attctattct tgtaattcaa aatgaaaaat
     2041 tattgagcat tattgataaa aaagcaggca ttaaagatgc ttttagattg gttgatgata
     2101 ttttagctcg tgctgtaaaa ggtatggtgt ctatcttact tgataatgga gatattaatg
     2161 ttgactttgc ggatgtaaga accatcatga gtcatcgcgg actcgcgctt atgggtgttg
     2221 gtagtgctag cggtgaaaat gctatagaag aggctctttc aaacgctata gaatctcctt
     2281 tgcttgatgg aatggatatt aaaggtgcca agggagttat tttacatttt aaaacaagtt
     2341 ctaattgctc tttgtttgaa atttcggcag cagcaaatag tatacaagaa attgttgatg
     2401 aaaatgctaa gattattttt ggttctacca cagatgatag catggaagat agagttgaag
     2461 taactattat tgcgacaggg tttgaagata aagatacagt agctaaaaaa tctaccgaag
     2521 aagctcaagc ttctaagaaa aatccttatt taagtcttaa aaaggtaagc ggtggttacg
     2581 atgaagagat aatggcgcaa attgaaacac caactttctt gcgtcgtcaa atggattaaa
     2641 attgattttt aaagcaagat tgagtcaaat cttgcttttt atagtttaaa attctctcct
     2701 aataatcttt caaatattta tttttctttg tttttaaaag ttggaacact ctttgctttt
     2761 atagttataa aatcttaaat ttataggtga aaatatgcaa aatggatatt atcaagcaac
     2821 tggcggaatg gtaactcagt ttaataaact tgatgtgatt actaataatc ttgccaatat
     2881 caatacaagt ggatataaaa gagatgatgt ggttattgca gattttaaaa ggatttttaa
     2941 agaaactcag gatgagttgc ctatagaaaa tcacacaaga gatgcatctc gttttgtaaa
     3001 tactacaata gatggaatcc cacaagtttc tcaagaatat acggatttta gcctaggttc
     3061 tttaaaggcc acaaacaatc ctttggattt ggcaatgact agagaagatg ctttttattt
     3121 ggttcagacc aaagatggag aagtaagatt aaccaaagat ggaaattttc aacttgatga
     3181 tgagggttat ttggtaaata agcaaggata caaggtatta agtagtgatt attttaataa
     3241 tcctcagaat gctggcatac gcattcctaa tagtgctgtt caaattagcg ttgataaaaa
     3301 cggaagcatt gaagttgatg gagctcaaaa tgcaagatta tttgtagcac aagtagatga
     3361 tataagagct ttgcaaaaag atggggataa tgtctataaa atagatgatc taacccgtat
     3421 tagagatttg aaaaactcca atgctattcg ccaaggtttt tctcagggat caaatgttaa
     3481 tccagttact gaaatggtag gactgattga agcaaacaga atggtagaaa tgtatcaaaa
     3541 agttatgaca gctcatatgg atgacttaaa tcaagaagct atcaataagc ttgcagctgt
     3601 taaataattt aaaataaaat aaaaaaggat taaaaatgat gagatcactt catactgctg
     3661 ctacaggaat ggtagcgcag caaacacaaa ttgatgttac ttcaaataac atcgccaatg
     3721 ttaatacagc aggttttaag aaaagtcgcg cagaatttgc tgatcttatg tatcaagtta
     3781 tgaagtatgc aggaacttca acttcagcta ctactctttc tccttcgggt atagaagtgg
     3841 gtgtgggtgt gcgtccaaca gcggtaacta aagtttttac tgaaggaaat ttaaaatcaa
     3901 caagtactga tggtcttgat atggctattg caggtaatgg gttttttcaa atacaacttc
     3961 ctgatggcac tataggatat actagaaatg ggcaatttac aaaagataat gaaggtaata
     4021 ttgtaaattc agatggttat agacttttac ctgaaatgac aatacctgaa ggcgcaacag
     4081 caattaatgt tgctacagat ggaaccgttt ctgtaatgct accaggggag caacaagaaa
     4141 ctcaaattgg ccaagtggag ctagttcagt ttataaatcc agcgggtctt cattctatgg
     4201 gtgataatct ttatcttgaa acaggagcaa gtggtgcacc tgttgcgggt atagcaggac
     4261 aagatgggct tggaacaata agacatggat ttatagaact tagtaatgtt cagcttgttg
     4321 aagaaatgac agatcttatc acaggacaaa gagcttatga agcgggttct aaggccatta
     4381 caacaagtga tgatatgcta ggaattgtaa atcagcttaa gcgatagttg atataaaata
     4441 aataattttt aattcttttt tgtttaatgg cgtgttaaac gccattaaat tttttagcaa
     4501 gagtagcaag ttttaaattc ataagcagtt ggacgagctt ctactggcca aacttgtgtt
     4561 tcaaatttta aatgctgata gtcatcgata aaaatatcgc tcattacagg ttttaaataa
     4621 gaattatgtc ggattaaagc ttccaaactt cctcttagag tatgtggtaa ttgctctatc
     4681 cctttttcac gtatttcatc caaagtaaga tcaaataaat tttcatccat aggacccaca
     4741 ggaatggttt tatttttgat tccatcaaga cctgccatta aaagactaac aaaagctaaa
     4801 taaggattag cagtgctatc agggaagcga atttctatac gagctgaatt tttacctatg
     4861 ccataaggaa cgcgacaact tgctgatctg ttttgacaag aataagttaa aatacaagga
     4921 gcttcaaagc caggaactat tcttttataa gagttggaac ttggatttgt aaaagctgcg
     4981 acacttctag cattttttaa aattccacct atataattta tagcagtttg actaagtcca
     5041 ctgtatccat ctttatcgta aaataaattt accccatctt tccataagct catatgaaca
     5101 tgcataccat tgccattatc tccgtataaa ggttttggca taaaagtggc agttttacca
     5161 tttaaatgag ctaccatttt tacaacatat ttataaattt gaacattgtc agctgcttct
     5221 acaagcgtgc caaaatttac tcctatttca gcttgtcctt gtgcaacttc atgatgatga
     5281 acaaaagttt taagacctac tttttcaagg gtttgaacca tttcagaacg aatatctact
     5341 aaagaatcaa ttggctgaac tggaaaatat ccacctttgt ttcttggcct gtgtccagta
     5401 ttgtagctat cggtaaattc tctatcatca ttccactctc cttcttcggt atcaacttca
     5461 tacttagaac aatgagtagt atcaactatt tttacactat caaaaacaaa gaattcattt
     5521 tctggtccaa agtaagcagt atcagctatg ccactatttt taaggtgttc cattgctttt
     5581 tttgctatgc ttcttggaca tttttcatac atttgtcctt tgtaaatatc atacacatca
     5641 caaaatacta tgatagtagg atcagccgta aaaggatcta aaaaagcact ttgagcatca
     5701 ggttttaaaa tcatatctga tttttctata ggttgccatc catgaattga gcttccatca
     5761 aatggaatgc cagtttgaaa tgtttcttca ttgattgcat gaagattata ggtaatatga
     5821 tgccaagttc ctatcatatc tgtaaaacga aaatcaacaa aaagcacttc attttgtttg
     5881 caaaatttga aaaaatcatc tatattatta acaaattttc ccatattttt actcctttat
     5941 gtaattaaat ttataaaatt atatcataaa atttttaatt aagatttaat taatatattt
     6001 tttttaataa atttaaaaat ttaatttaaa aagattaaaa aataaaaatt tatatttttg
     6061 ttttagataa aattgattat aattttgagc aattattgaa aatctagatt taaaaaaggg
     6121 aaaaaaatga ctcaagaaga gcttgatgct ttgatgaatg gtgatgttga tcttgattca
     6181 gagacagaag cagaggtaaa aaccgaagaa tcgaataccg aagaagatgc tttgatgtta
     6241 gaagatgtca aaatagctga ttacaaacct aatcctagtg tagtatggcc accaccccca
     6301 ccaaatcagg agcataaagt tgtacatcag ttagatgatg ttacaaaaga tagcgagctt
     6361 aaagcaacgg aaatgatgga taagcttgaa agtattaata atttttttgc ggattctgaa
     6421 agtttactca aagaaataaa taaagcaata gaaaaaaata ttgatatttt ttctaaactt
     6481 aatgaaaaat ttcctaatgt ggaaagtttc agtgaagctt tagaattaaa caatcaagct
     6541 aaaaaaagtt ctaaggagat tgtcggaaat cttcaaagcg gacaagatga agtgatgatg
     6601 gcaatggatg caatgcagta tcaagatata catcgtcaaa aaatcgaacg tgttattaat
     6661 gtaatgcgtg ctttaagccg ttatatgagt tctttatttg aaggtaaaat tgatgataaa
     6721 aaacgtgtaa gttctgcagt gcatattgaa ggtgatagta ctgctgatgt tgtaagtaat
     6781 gatgatatag aagctttgat tgcaagttta gggcaaaaat gatcattcct gaaatagtag
     6841 ctcctgcagg aaatttcgca aaattaaaaa ttgctttagc ttatggcgca gatgcggttt
     6901 atgcgggtgt gaataatttt tctttaagat cacgcactgc aagagaattt aattatgaaa
     6961 gttttgaaga agctatcaaa tatactcatg agcgtggtaa gaaaatttat gttactttaa
     7021 atggttttca tttgagttct caaattgaag gtttaaaaag acatatttta aaattgcgtg
     7081 agatgaaacc tgatgctttt attgtagctt ctgttggagc tatgcgtctt gttaaagaac
     7141 ttgcacctga aatttcttta catgtttcta ctcaggcaaa tattttaaat tatttagatg
     7201 ctcaagttta taaagatatg ggtgctaaaa gggttgtaat tgccagagaa ttagggctta
     7261 aagacgctaa agctttaaag gaaaattgcg atattgaact tgaagctttt gtgcatggtt
     7321 ctatgtgttt tgcttattct gggcgttgtt taataagctc tgtgcaaagt ggaagaatga
     7381 gcaatcgtgg atcttgtgca aatgattgta gatttaatta tgagctttat gctaaaaatc
     7441 cagaaaatgg cactttattt cgtttagaag aagatgaaaa tggtactcat atttttaatt
     7501 ctaaagattt aaatctttgt tcttatatag aaaaaatcat gcaagaaaat tgtatcagtg
     7561 cttttaaaat agaagggcgt actaaaagcg aatattatgt tgcgcttaca acaaggactt
     7621 ataaaatggc catacaagat gctttagagg gtaaatttga gtcaagtaag tatgaaaaag
     7681 agattgctac acttaaaaat cgtggtttta cagatggcta tcttgtttcg cgtcctttag
     7741 aaaaaaccga cacacaaaat cataatacaa gcatagaaga aggttctcat caagtgcatg
     7801 ctataagcga agatggaaga ttttttaaat gtaaagggaa aatcgtttta aacacgcctt
     7861 atgaaatttt aaccccttta ggcgatgtga ttcaaacttg cgataatgaa ctaggtaaaa
     7921 tttatcaaaa agagggtaaa tattttatag agtttaaaaa acttattgct aaaaacaata
     7981 aagaatttag cgaaattcat agcggtaatg aacatgaaat ccaattacca aataaaatca
     8041 gtgcattaag ttttttaaga aaggaaatat agatgaattt tgtttctatt ttaatgggaa
     8101 gcaagagtga ttatgagact atgaaagagg ctgctaaaac tttagaaagt tttggtgtaa
     8161 agtatgaact tatcatctca tcagctcatc gtagtccaaa aagaacaaaa gagtatattg
     8221 caaatgctga agaaaaaggt gtgaaggttt ttatagcagc agctggaatg gcagcgcatt
     8281 tagctggagc tgttgcagct tatacaacaa aacctgtttt aggagtgcct atgccaggaa
     8341 gtaatcttgc aagtatggat tctttgtttt ctacggtgca aatgcctagt ggaattcctg
     8401 taggaacttt agctattggt aaggctggag caatcaatgc tgcttatttg gctatgcaaa
     8461 ttttagctat ttatgatgtt gatttagcac aaaagcttaa agaagatcgt cttgaaaaag
     8521 aaaaaaaact tgtatctgat tcaaaagaag tagaagtttt attataaggg ataaaaatgc
     8581 aaacctatct tgaacttgaa gaattttgta aacttgtgca tttaaatgaa gatgtggtta
     8641 agggtatgat ggccaatggg gctttaaatt ttaaagaaga agagggtaaa atttacatcg
     8701 aagctcatca aggtactttt agtgtagtgc ctagttctgc aaaatctcaa actgcaatgg
     8761 taaattcaat gactttagca ggagaaagtt ttgttgaaaa aacaatagga actattttaa
     8821 atttacatga aaaagtttta gatgctaaag atgaaacact tgaagcatta aaaaatgaaa
     8881 ataaattttt aaaagatgcc ctttattcta tgcaagagct ttatgatgaa gatagaaaaa
     8941 ctatagaaac cttaaacaat gagttaaaac atgcgcgtga agagatagaa tttctcaagc
     9001 gtaaatataa attaatgtgg agtaaaactg cagaaatttt tggagctaag acagagcctg
     9061 atttggaaat gaataaaaat ttagaaaaac ctattgaaaa tatggaacaa taaagagaga
     9121 tacaatgact ttttcacaaa tgatacttaa tttacaaaat tattggcaag agcaaggttg
     9181 tgcgattatg caaccttatg atatgccagc aggtgcagga acctttcatc cagcaacttt
     9241 tttaagaagt ttaggaaaaa aaccttgggc agctgcttat gtggctccaa gtagaaggcc
     9301 tactgatgga cgttatggtg aaaatcctaa tcgcttaggt gcttattatc aatttcaagt
     9361 tttgattaaa cctagtcctg ataatatcca agaattatat cttaaaagtc ttgaaaattt
     9421 gggttttgat ttaaaaagtc atgatattcg ttttgttgaa gataattggg agagtccaag
     9481 tttgggtgct tggggtttag gctgggaagt atggcttgat ggtatggaag ttactcaatt
     9541 tacttatttt cagcaagttg gcggtatagc agtagattta gtaagtgctg aaattaccta
     9601 tggtcttgaa agaatagcca tgtatcttca aaatgttgat aatgtttatg atatagtttg
     9661 gagtgaattt aatggagaaa aaattaaata cgcagatgtg cataagcaaa gtgaatatga
     9721 atttagtaaa tacaattttg aagtaagtga tgttaaaatc ttaaatgagc agtttgaaaa
     9781 ttcttacaaa gaatgtaaaa atattttaga acaaggacta gctttacctg cttatgatta
     9841 ttgtatgctt gctgcacata cttttaatct tttagatgca agaggagcaa tttctgtagc
     9901 acaaagacaa gattatatgt taaaaattcg tgaactttca aaaaattgtg ctgaaattta
     9961 taagaaaaat ttaaatgaag ctgagtgaaa tttataattt tttagatcaa ttaagtccct
    10021 ttgatatcca agaatcatgg gataatagtg gaattttgct tggagatagg gatagtgaaa
    10081 tttcaactgt ttatttaagc ttagatattg atgaaaatat cattaaagaa gcgagtgaaa
    10141 attctttaat tatcacacac catcctttga tatttaaagg tttaaaagat ttatatgaca
    10201 agacttatcc tagggctttt atcaaagaaa tgatttataa aaatatttct ttaatcagta
    10261 tgcatacaaa ttacgattta agtcatttaa atacttattt tacggaagaa attttaggtt
    10321 ttaaaatttc ttttaaagat gaatttttaa tttatgtgga aaattctatg tcttttgaag
    10381 ctttgtgtga ctgggtgaaa aaaaagttaa atttgcaaat tttacgtgta agtgattgtg
    10441 gcaaaaaaga cattaagcgc attgctatat gtactggaag tggcggggat ttaatttcta
    10501 aagtagatgc ggattgtttt ttaagtggag attttaaata tcatcaagct ttagaggcgc
    10561 ttagtaatca aatcagtctt attgatttgg gtcattttga aagtgagaga tatttttctc
    10621 aatgtctagc aaaagacttg aaaaatttgc cgctacaagt tataataaca gtttca
//
LOCUS       DARGEM010000058        10663 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.058, whole genome shotgun sequence.
ACCESSION   DARGEM010000058 DARGEM010000000
VERSION     DARGEM010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.058"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            19..1182
                     /locus_tag="SFZ78_001069"
     CDS             19..1182
                     /locus_tag="SFZ78_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8211941.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            1298..2089
                     /gene="rpsB"
                     /locus_tag="SFZ78_001070"
     CDS             1298..2089
                     /gene="rpsB"
                     /locus_tag="SFZ78_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8211942.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            2089..3162
                     /locus_tag="SFZ78_001071"
     CDS             2089..3162
                     /locus_tag="SFZ78_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG8211943.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAVEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIILGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            3175..3810
                     /locus_tag="SFZ78_001072"
     CDS             3175..3810
                     /locus_tag="SFZ78_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8211944.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            3797..4564
                     /gene="fliR"
                     /locus_tag="SFZ78_001073"
     CDS             3797..4564
                     /gene="fliR"
                     /locus_tag="SFZ78_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG8211945.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFAMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            4621..6228
                     /locus_tag="SFZ78_001074"
     CDS             4621..6228
                     /locus_tag="SFZ78_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8211946.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNSN
                     KTLETQNLEHDNLEQETIKEQTQEDTPIDLDLTLEDGESEKEDLSQEHTALDTEPSLD
                     ELDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNSNKTLETQNLEHDNLEQETIKE
                     QTQEDTQIDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDEDLEDNKELQANI
                     SDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESEENLEEFAPVVEEDVQDEIDD
                     FASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDKELGTNEEEVVVP
                     NLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVNELSQSIAGAITS
                     SIKDDTLKAALKGMNMNININISFKED"
     gene            6225..6848
                     /gene="gmk"
                     /locus_tag="SFZ78_001075"
     CDS             6225..6848
                     /gene="gmk"
                     /locus_tag="SFZ78_001075"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG8211947.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            6850..7089
                     /locus_tag="SFZ78_001076"
     CDS             6850..7089
                     /locus_tag="SFZ78_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG8211948.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            7101..8693
                     /locus_tag="SFZ78_001077"
     CDS             7101..8693
                     /locus_tag="SFZ78_001077"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG8211949.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFHTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVNEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSTNENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(8711..9019)
                     /locus_tag="SFZ78_001078"
     CDS             complement(8711..9019)
                     /locus_tag="SFZ78_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8211950.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLVAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(9019..9360)
                     /locus_tag="SFZ78_001079"
     CDS             complement(9019..9360)
                     /locus_tag="SFZ78_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8211951.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQVLGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            9469..10176
                     /locus_tag="SFZ78_001080"
     CDS             9469..10176
                     /locus_tag="SFZ78_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG8211952.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            10186..>10663
                     /locus_tag="SFZ78_001081"
     CDS             10186..>10663
                     /locus_tag="SFZ78_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8211953.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDK"
BASE COUNT         3967 a         1303 c         2013 g         3380 t
ORIGIN      
        1 tattagttgg agtatgtcat gcttgaaaaa caaatgatta aatttattct ttcaaaatgg
       61 aattatggaa attttagaat tgtattttgg gatcaagaag aatttcatgt gggtaatcag
      121 cctgctaaat tttctttaat tttcaaagaa aaaatacctt ttttaaaatt atttagtgat
      181 acgagtttag tttttgcaaa acattatatg gagtctaaac tagaaataga aggtgattat
      241 gatgaaatag ctaaagtttt gtattatttt tcaaataagc gttttttaaa aaatacagag
      301 gatatcttga gtaaaatagc ccaaaaacag gaaagtaaaa atatcaaaag tcattatgat
      361 ataggtaatg atttttataa gctttggctt gatgatacta tgagctattc ttgcgcttat
      421 tttaaagagc ctaataatac tctttatgaa gctcaaatta acaaaataga gcatactctt
      481 aaaaaacttg atttaaaaga aggagaaaag cttttagata taggttgtgg ctggggttgg
      541 ctttctatta tggcggctca aaagtatgga gttaaggttg ttggaattac tatttcagag
      601 gagcagtgta aaaaagctaa ggaaagagta aaagaacttg gtcttgaaga taaaatagaa
      661 ataagacttc aaaattatca agatttagaa tttgaaaatt attttgataa agttgtttct
      721 gtgggtatgt ttgaacatgt aggcaaagag aatttaggac tttatttcat gaaagtaaaa
      781 caagtgttaa aacctggagg ttctatgctt ttacattcta ttttagccat gtttgaagga
      841 aaaacaaatg cttggataga taaatatatt tttccaggag gatatttacc ttctttaaga
      901 gaggttgtaa gtgctatgag tgagtgggat tttcatcttc ttttagcaga aagtttaaga
      961 atgcactatg caaaaacttt agatttatgg gatgaaaatt ttaacaaagt attggacaag
     1021 gtaagggaaa aatatgatga agaatttata agaatgtggg atttatacct tcgttcttgt
     1081 gcctctgctt ttcgtgttgg aagcgtggat ttgtttcaat ttttaatcac aaaagaaatc
     1141 aataataatc taagccttac caaggactac atatataagt aaaaactaaa cttaaatttg
     1201 ataaaatctt agcttcattt cacacgcatc aatccttttt agcttgtgta aattaaggga
     1261 tgtggaggaa taaagctaaa tttataagga gaaactcatg gttagtatga gagatttatt
     1321 agaatgcggt gtgcattttg gacaccaaac aagacgctgg aatccaaaga tgaaaaaatt
     1381 catttttggc gagagaaaag gtatttatgt aattgattta caaaaaactt taagatattt
     1441 tagatatacc tataatatcg ttcgtgacgc tgctgccgaa ggaaaaacta tactttttgt
     1501 cgggacaaaa aaacaagcag gtggagcgat taaagaatac gctgaaaaat gcggtatgcc
     1561 ttatgtaaat catagatggc ttggcggtat gatgacaaat tttggtacca ttcgccaatc
     1621 aattagaaaa ttagaagtaa ttgaaaaaat ggaagaagat ggaagtatta aacttttaac
     1681 taaaaaagaa gctttaatgc ttacaagaaa aaaagaaaaa ttattagctt atttaggtgg
     1741 aattcgttat atgaaaactc aacctgatat gatttttgtt attgacacag taaaagaaaa
     1801 aattgctgtt caagaagcaa atagattaag aattcctgtt gtagctccac tagatacaaa
     1861 ctgcgatcct gacttggtaa cttatcctat tccaggaaat gatgatgcaa ttcgttcagt
     1921 gcaacttttc tgccaagaaa tggctgaagc gattaatgaa ggaaaagctt taagagaaca
     1981 agatggcgaa gctttagcaa atgaagaaaa agaaatcacc gatgaagaga aaaaagaagt
     2041 tttagatgaa gcgatgagcg aagaagactt cggtgaggag caagaataat ggctgaaatt
     2101 actgctgcaa tggtaaaaga actccgcgaa agtacaggcg cggggatgat ggattgtaaa
     2161 aatgctttga gtgaaactaa tggagatttt gataaagcag tacaactttt aagagaaaaa
     2221 ggtttaggta aggctgctaa aaaagcagat agacttgctg tagaaggttt agtaagtgta
     2281 aaagtaagtg atgattttac aagcgcaact gtaagtgaga ttaattccga aacagatttt
     2341 gtggcaaaaa atgatcagtt tatcgcttta acaaaagata ctacagctca tattcaaagc
     2401 aatagcttgc aaagtgtgga agagcttcac tcaagtacga ttaatggtgt aaaatttgaa
     2461 gaatatttaa aaagtcaaat tgcaactata ggagaaaact tagttgtaag aagatttgca
     2521 actttaaaag caggtgctaa cggcgttgta aatggttata ttcatacaaa tggccgtgtt
     2581 ggtgttgtga tcgctgcagc ttgtgatagt gctgaagtag cttcaaaatc aagagattta
     2641 ttaagacaaa tttgtatgca tattgcagca atgagaccaa gttatttaag ttatgaagat
     2701 ttggatatga cttttgttga aaatgaatac aaagctttgg ttgctgaact tgaaaaagaa
     2761 aatgaagaaa gacgcagact taaagatcca aataaacctg aacataaaat tcctcaattt
     2821 gcaagtcgca aacaattaag cgatgcaatt ttaaaagaag ctgaagaaaa aatcaaagaa
     2881 gaacttaaag ctcaaggtaa acctgaaaaa atttgggata atattatcct gggcaaaatg
     2941 aatagtttta tagctgataa ttctcaactc gatagcaaac ttactttaat gggtcagttt
     3001 tatgtaatgg atgataaaaa aactgtagaa caagtaattg ctgaaaaaga aaaagaattt
     3061 ggcggaaaaa ttaaaattgt tgaatttatt tgctttgaag ttggcgaagg tttagaaaag
     3121 aaaactgaag attttgcggc tgaagttgct gcacaacttt aaaaacggtt aaaaatggaa
     3181 ctcttaagag cggaaaattt aagccatagt tttgattatc cgctttttga gggtttaaat
     3241 cttactttaa ataccaaaga ttgcattgct attcaaggga gtagcggttg tggtaaatct
     3301 actcttttgc atatactttc ttctttattg attccaaaaa aaggtgaagt tttttttaaa
     3361 ggttctagtc tttatcagat agatgaaaac gaaagattaa aaattcgccg ttatgatttt
     3421 ggtattattt ttcagacaca ttatcttttt aaaggttttt cggctttaga aaatatcgaa
     3481 cttgctagtg ttttatcggg tcaagattta gatgagaaaa ttttaaaaag gttaggtatt
     3541 gatacgcttt tacatcaaaa aataggaaag cttagcggcg gacaacaaca gcgtgtgagt
     3601 atcgcacgtg tgctttgtaa aaaaccaaag attatttttg ctgatgaagc aactggaaat
     3661 ttggattttg ataatgctaa aaatgttatc gagcttttaa tttcctatgt taaagaaaat
     3721 gatgcagctt tattttttgt aactcacgat agcaagcttg caagtttttg tgataaaact
     3781 tatactataa acgccaatgg aatttgttaa ttatttaggt gataaaaatg ttgtaacttt
     3841 tatgttgctt cttgctagaa tgagtggtct tatagttttt tttccttttt tttcacataa
     3901 ttctattcct atggtgataa aaagtactat agttttattt ttgactatgt atttatatcc
     3961 tttggctaga ttagaatctt tgcatttaga tagttttttt gttttacagc ttattagtga
     4021 agtgattttt ggaatgatag caggattaat gcttcaaatt atttttgcta ttattatgat
     4081 ggcaggtgag cagattgctt ttactatggg atttactatg gcaagtatat tagatccaag
     4141 ttctggaacg agtatgccta tcacatctca aattttaaat ttacttgctt tgatgttttt
     4201 tcttgctttt gatggccatc atttaatgct tttgttttta agtcattctt tgggttatat
     4261 tagtttaggt ggattttatc cgcatgagaa tttaatgcat tatttaaata tgggtatgtt
     4321 taatattttc atcataggtt ttgctatgag ctttcctata cttggaattt cacttttagc
     4381 cgatgttatt tttggacttt tgatgaaaac aatgccacaa tttaatcttt tagttattgg
     4441 ctatcctata aagatagctc taggttttgt agttttgatt gctattttac tagttatgat
     4501 gcaatatttt aaaaatttaa ttttagaact ttttactcat atgcaaactc tttttttctc
     4561 ctaaggaaag gataaatgaa attatcgtaa aatagcgatt attttttaag gattaaagtg
     4621 atgaaaattt tacttttaaa tgaaaaccct gtagtttcaa gacttgtaag ccttagtgct
     4681 aaaaaaatgt cttatgattt tgaagaactt aatgcttata gtgaaaattt gggtaattat
     4741 gatgtgattg ttgtagatag tgatactcca gcacctttaa aaattcttaa agaaaaatgc
     4801 gatagattga tttttttagc cccgcgaaat caaaatgtag aagatataga tgcgcaaatt
     4861 ttacaaaaac cttttttacc tacagatttt ttaaatttac ttaataataa agatgcgaac
     4921 aagcatacat ctattgattt gccaatgtta agcaatgatg aaaatcctta tgctgatata
     4981 agcttggatt tagataattt aaatttagat gatttgcctg atgaaaattc tttagatata
     5041 aattcagagg gaatggaaga tttgagtttt gatgatgatg ctcaagatga taattcaaac
     5101 aaaactttag aaactcaaaa tttagaacat gacaatttag aacaagaaac aattaaagaa
     5161 cagactcaag aagacactcc aattgattta gatttaactt tagaagatgg cgaaagtgaa
     5221 aaagaagact taagccaaga acatacagct ttggatactg agcctagttt agatgagcta
     5281 gatgataaaa atgaagaaat agaaaagcaa gaattattag acgattctaa aacaaataca
     5341 ttagaaatgc aagaagagct tagcgaatct caagatgata attcaaacaa aactttagaa
     5401 actcaaaatt tagaacatga caatttagaa caagaaacaa ttaaagaaca gactcaagaa
     5461 gacactcaaa ttgatttaga tttaacttta gaagatggcg aaagtgaaaa agaagactta
     5521 agccaagaac atacagcttt ggatactgag cctagtttag atgagctaga tgataaaaat
     5581 gatgaagatt tagaagataa taaagaatta caagctaata taagcgattt tgatgatctt
     5641 cctgaggttg aagagcaaga aaaagaaatg gattttgatg atcttcctga ggatgctgaa
     5701 tttttaggtc aagcaaaata taatgaagaa tcagaggaaa atttagagga gtttgctcct
     5761 gttgtggaag aagatgttca agatgaaata gatgattttg cttcaaattt gagtactcaa
     5821 gatcaaatca aagaagaact agctcaactt gatgagcttg attatggtat tgatagtgac
     5881 aatagtagca aggtcttaga agattttaaa gatgaaccaa ttttagacga taaagaatta
     5941 ggaacaaatg aagaggaagt ggttgtgcca aatttaaata taagtgattt tgatacattg
     6001 aaagaaagtg atatacaaga agctcttgga gaggaaatct tagaaaaaaa tgaagagcct
     6061 atagtaagtg atgtaactaa agatgataat agcgaagaga tagttaatga gcttagccaa
     6121 agcatagcag gagcgatcac ttcaagtatt aaagatgata ccttaaaagc tgctcttaag
     6181 ggtatgaata tgaatataaa tataaacatt agttttaaag aggattgaaa ttgcaaggtt
     6241 ttgttttgtt gatttcaggt cctagtggtg ctggaaaatc aactctttta aaaaaacttt
     6301 ttgatgaatt tgaagatgag ctttattttt ctatttcttc aacaactcgc aaaccaagag
     6361 agggtgaaaa aaatggaata cattatcatt ttatatccca tgaagaattt caaaaaggta
     6421 tagatagtga tcatttttta gaatgggcta gagtgcatga aaatttttat ggtacttctt
     6481 taaagcacac tcaaaatgct ttagataatg gaaaaatagt tgtttttgat attgatgtgc
     6541 aaggatttaa aatagccaga aaaaaaatgg ctgataagat tgtttctgtt tttattacta
     6601 caaaaaataa agatgagtta aaaaaaagac ttattaagcg aaatactgat acaataatac
     6661 aactagaaaa aagattacaa aacgctagtg atgaaatgaa agagcttagc gagtatgatt
     6721 atcttatcat taacgatgag ttaaagcaaa gttatgaagc attgcgagcg attttaatcg
     6781 cccataaatt tagaaccaaa gggcagaatc tagggcaaat tcaaaatatt tggaatgaag
     6841 gagaataaaa tgggtggttg gtcaagtcca agtcattggt tgattatttt attgattgtt
     6901 gtattgcttt ttggagcaaa aaaaattcca gaacttgcaa agggtttagg caaaggtatt
     6961 aaaactttta aagatgaaat gaataatgat gatgaagtag caaaaaatac tcaaaaaata
     7021 gaagaaaaca aaaacacaac taataataca aatgctgatg caagtataga cgaaacaaaa
     7081 aaagcttaag gtttagtctt ttgaaaagta ttatttttaa tgaaattaaa aagattttag
     7141 agtgtgattt tgcgcttgaa aatccaaagg ataaaaattt agcacatttt gctacccctt
     7201 tggctttttc actggctaag gaattaaaaa aatcccctat gttgatcgct agcgacttag
     7261 cgagcaaatt tcaaaatcat gattgttttg aatcagttga agctgtaaat gggtatttaa
     7321 attttagaat ttccaaaact tttttaaatg aacttgcaaa tcaggcttta acaaatccaa
     7381 atgattttac taaaggagaa aaaaaacaag aaagtttttt gcttgaatat gtgagtgcaa
     7441 atcctactgg gcctttacac ataggacatg caagaggcgc tgtttttgga gacaccttaa
     7501 caagacttgc aagacatttg ggctataaat ttcatacaga atactatgtc aatgatgcgg
     7561 gtaatcaaat ttatttacta ggactttcta ttttactaag tgtgaaagaa agtatacttc
     7621 atgaaaatgt tgaatatcca gagcaatatt acaaaggcga gtatatagcg gatttagcaa
     7681 aagaagcttt tgaaaaattt ggtaaagaat tttttagcga agaaaatatc cctagtttgg
     7741 ctgattgggc aaaagataaa atgcttgttt tgattaaaca aaatttagaa caagcaaaga
     7801 ttaaaattga cagctatgta agcgaaagat cgtattatga tgctttaaat gcaactttag
     7861 aatctttaaa agagcataaa ggaatttacg agcaagaagg taaaatttgg cttgcttctt
     7921 cgcaaaaagg cgatgaaaaa gatagggtaa ttatccgtga agatggacgc gggacttatt
     7981 tggcagcaga tattgtttat cataaagata aaatgagtcg tggttatgga aagtgtatta
     8041 atatttgggg agcagatcat catggttata tccctagaat gaaagctgcg atggaatttt
     8101 tgggatttga ctctaataat cttgagatta ttttagcaca aatggtttcc ctacttaaag
     8161 atggagaacc ttataaaatg agtaaaagag caggaaattt tatcttgatg agcgatgtgg
     8221 ttaatgagat aggaagtgat gctttgcgtt atatcttttt gagcaaaaaa tgcgatacgc
     8281 atttggaatt tgatattagt gatttgcaaa aagaagatag ttctaatcct gtgtattata
     8341 tcaactatgc acacgctaga attcatcaag tatttgctaa agctggtaaa aaaatcgatg
     8401 atgtaatgaa agctgattta caaagtttaa atcaagatgg cgtaaatttg ctttttgaag
     8461 ctttgaattt aaaggctgtt ttaaacgatg cttttgaggc tagagctttg caaaaaattc
     8521 ctgattatct taaaaattta gctgcaaatt ttcataaatt ctacaatgaa aataaagttg
     8581 taggctctac aaatgaaaat gatttgctta aattattttc tttggttgct cttagtatta
     8641 aaaccgcatt ttctttaatg ggtattgaag caaaaaacaa aatggaacat taaaaccgca
     8701 ttttgctgtt ttaataattt agcaaaaata ctgctattat tacgataatg atacctaaaa
     8761 ttcctatttt gtttaatttt tctttatata aaatccatcc accaagacaa gttcctatga
     8821 tgcctatagc accccaagtt gagtaagcta tgcttaaagg aacatatttt aaagaaaaag
     8881 aaagtagaaa aaaagcaagt atagcattga caatcgcaac caagccccaa attttatgct
     8941 taaaaccatc tgattttttt agcaataaat ttgctacgat atctaacaat gctgataaaa
     9001 caatgataaa aatatacatt attctttaac ctcgcctata ttaatcatga taattccaac
     9061 gatagaaaga ataatgccta gaatttgagt taaggttaaa ctctctttaa aaactataaa
     9121 agaaactaaa agtataagaa taatccctaa aagctcccat acagcatagg ctatgcctac
     9181 ttgaattttt ttaatcgcct tgcccataaa aaaataagaa aaagctataa ataaagccat
     9241 aaatatatag cctaaaactt gattttccat ttttaaaaaa ctagtgccta aaacttcaaa
     9301 tacaatagca gcaatcaaga aaaaccaagc aacaaaaagt tctttttttg cgatattcaa
     9361 aaagcttctc cccaaaaata aatggtaaaa tcataccatt taaagcttta attagccttt
     9421 ttagtttata cttttaagtt taaaaatctt taaagaaagt gagaatttat gggacgagcg
     9481 tttgaatacc gaagagcttc taaagaggct agatgggata aaatgagtaa gctttttcct
     9541 aagcttgcta aagccataca agtagctgct aaagaaggtg gcactgatcc tgatatgaat
     9601 ccaaaattaa gaagtgctat agccacagca aaagcaaata atatgccaaa agataatata
     9661 gatgcggcta ttaagcgtgc gagtggaaaa gatagcgcag atattaaaaa cattcattat
     9721 gaaggaaaag ctgcacatgg agctttggtt atagttgaat gtatgagcga taaccctacg
     9781 cgcaccgtgg ctaatgttaa agccattttt agcaaaaatg gtggagaagt tttacaaaat
     9841 ggatctttag gctttatgtt tactagaaaa gcggtttttc atcttgaaaa atttgcagga
     9901 gatttagaag aattagaact tgatttgatc gatgcagggc ttgaagaatt agaacaaaat
     9961 gaagaagagt tagtaattag tggtgattat actgcctttg gtgagctaag ttctgctata
    10021 gagactaagg gtttagttct taaaaaagca ggacttgagt atataccaaa caatcctgta
    10081 agctttagcg aagaacagct tagcgatata gaaaaacttt tagataagtt agaagatgac
    10141 gatgatgttc aagctgttta tacaaatata gattaaggag aaataatgat aaaaacaatc
    10201 gacacaagca aagtaaatga atacaaattt gctcttatag aaactgaaaa aggcacaatg
    10261 aaattaaaac tttttggcga tgaggctccg caaacggttt gtaattttgc tactttggct
    10321 aatgagggat tttataaaga tttaaatttt catcgtgtga tcccaaattt tgtcatacaa
    10381 ggaggttgtc cacacggcaa tggtgtaggt gggcctggat atgaaatcat ttgcgaatgt
    10441 gatgatcaag agcataaaca tgagcgtgga accttatcta tggcacacgc aggacgcgat
    10501 acgggtggtt ctcaattttt tatttgtcac agccctcaag ctcatttaga tggggttcat
    10561 actgtttttg ggcaaattga tccaaaagat gaagaaagtt tagaagtttt agactctata
    10621 cgccaaggag ataaaatttt agacataaaa atttgtgata aaa
//
LOCUS       DARGEM010000059        10565 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.059, whole genome shotgun sequence.
ACCESSION   DARGEM010000059 DARGEM010000000
VERSION     DARGEM010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10565
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.059"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            26..1511
                     /locus_tag="SFZ78_001082"
                     /pseudo
     CDS             26..1511
                     /locus_tag="SFZ78_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275251.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1710..3263
                     /locus_tag="SFZ78_001083"
     CDS             1710..3263
                     /locus_tag="SFZ78_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEG8211954.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3279..5069
                     /locus_tag="SFZ78_001084"
     CDS             3279..5069
                     /locus_tag="SFZ78_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG8211955.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5190..6995)
                     /gene="mrdA"
                     /locus_tag="SFZ78_001085"
     CDS             complement(5190..6995)
                     /gene="mrdA"
                     /locus_tag="SFZ78_001085"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8211956.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLEHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIDLGYFK"
     gene            complement(6996..7490)
                     /locus_tag="SFZ78_001086"
     CDS             complement(6996..7490)
                     /locus_tag="SFZ78_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211957.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7487..8083)
                     /locus_tag="SFZ78_001087"
     CDS             complement(7487..8083)
                     /locus_tag="SFZ78_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG8211958.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGFDSLEDIIINQTLGLDK"
     gene            complement(8080..8541)
                     /locus_tag="SFZ78_001088"
     CDS             complement(8080..8541)
                     /locus_tag="SFZ78_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG8211959.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8523..9038)
                     /locus_tag="SFZ78_001089"
     CDS             complement(8523..9038)
                     /locus_tag="SFZ78_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211960.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGANNVKIISQEVEYEPKNKVLYTNTDFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9029..9517)
                     /locus_tag="SFZ78_001090"
     CDS             complement(9029..9517)
                     /locus_tag="SFZ78_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8211961.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(9523..10350)
                     /locus_tag="SFZ78_001091"
     CDS             complement(9523..10350)
                     /locus_tag="SFZ78_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG8211962.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYKGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAVSGAFAGAFVVRE"
     gene            complement(10310..>10565)
                     /locus_tag="SFZ78_001092"
     CDS             complement(10310..>10565)
                     /locus_tag="SFZ78_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEG8211963.1"
                     /translation="FFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVD
                     EIREFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
BASE COUNT         3672 a         1705 c         1443 g         3745 t
ORIGIN      
        1 gcataaaaaa gaaaggtatt gggaagtgac taaacaagaa atacaaaaac tcgatacaaa
       61 tttactaggt catcccaagc ctttattctc tctatcaatg gtagaacttt gggaaagatt
      121 tgctttttat ggcatacgat ctttacttgt gcttttcatg gcaacaacca taagcaaagg
      181 tggacttgga ataagcactg aatacgcctc ggcaatttat ggcatttttg caggatgctt
      241 gtatttagca gcacttcctg gaggctggat tactgataat tatttagggc aaaaaaaggc
      301 tttattttta ggttctttta ttatagcttt aggacatatt agcatagcct tatctatttt
      361 aagcacacct atatttttcc taggacttct tttatcgtta ttggtactgg attttttaaa
      421 actagcgctt ctgtaacagt tggaatgttg tataaacaaa atgatacaag atgtgatact
      481 ggctatacga ttttttatat aggaattaac attggagcat tcattgctcc tcttatatgt
      541 ggttttgttc aagcaaaatg gaattatcat ttaggatttg gctaggaggt ttaggtatgc
      601 taatctcttt gcttatttta tattttaaag ctgcccctga gcttgaagaa tttcataaaa
      661 attgcacctt aaagcaaaac tgggaacaac catttaaaaa agtaaaaaat ttaactctta
      721 tactaagtat aagcttgtta agtattattg gattttttct aatgtttatt aatcttgtaa
      781 atattaatcc catataatac tatcaaaaaa acttctaatt gtaattttac tatgcttggt
      841 aatttatttc atatatcttt ttgtttttaa agccttaaat aaaagagaga aacaacaatt
      901 aataatttta attgttttat tctttgcagc cacttttttt ggagtacttt taaacaaaaa
      961 ccctaccgct tataatcttt ttgcgcaaga ttttacaaat agaaatattt ttgattggaa
     1021 aattccaaca aactggtttc aatcttttaa tccaattttt atcatcatac ttgctcctat
     1081 agcaagttat atttggatat ttttagagaa aaaaatatat atttttcttc cattggaaaa
     1141 tttactttag gaatattatt tgccggtatt ggctttatga tgatgacctt tgcttcacaa
     1201 aatctaataa acaacaatgg tttaccaata tccatggctt ggattatcat aagtatattc
     1261 tttttaacac ttggggaatt atgcgtgtct cctattggac tctctataat ggctaaggtt
     1321 gcccctgatt taatcaaaaa tcaaatcatg ggactttggt tgcaagtgcg cttggaaatt
     1381 ttgttgcagg acttatagga ggaaatgtca atattaaaaa catcgatcaa cttcctaata
     1441 tttttgaaca atgcatgtgg atgctttttg ttgtagcact tttgcttttt attgctaaaa
     1501 aaccatctta acaaaaaaaa taagcaatta tctaactaaa cttaaaatac aaaatacacc
     1561 aaagttgaaa attgatctta atatttcttt ttttatattt gcaaaaaagt aacattatga
     1621 tataaatcat ttaaaaatat tacaaagtta tacatatttt ttaatttctt gtctataatt
     1681 tataaataaa aatacacaaa ggatataaat tgagtaaaaa tgtaaaaaat ttagatactt
     1741 cattttttgg acatccaaaa ccacttttat ctctttcact tactgagctt tgggaaagat
     1801 tttcttttta cggaattcgt cccttgcttt acctttttat gatagcaagt tttgaaaaaa
     1861 gtggaatgaa cttaaaacct gaagaagcaa gtgcaattat gggaattttt gcaagttgtt
     1921 tatatcttgc tgctttgcca ggtggatggc ttgcggacaa ttacttagga caaaaaagag
     1981 caattttact aggtgcttta actatagcat ttggacattt gtgcatagcc ttttcttatt
     2041 ttaacaataa aatgattttt gttggtatgg tttttttggt tataggtaca ggacttttta
     2101 aaacttgtgc ttctgtaatg gttggaatgc tttataaaaa aaatgatgca aggcgtgact
     2161 ctggttttac tcttttttat atgtgcttta attttggtgc ttttgtagct cctttaattt
     2221 gcggcttttt acaaaaagaa tacggatggc attttggttt tggtgcaggt gggattggta
     2281 tgcttttagc ggtaattatt ttctacctaa aaactatgcc tgatttaaaa gaatttgatg
     2341 aaaaagttgg catagactct acttgggata gaccaagcaa aaaaagcaaa aacgcatttt
     2401 acatcatcat tgtatcaggt attgttttgc ttggagcaat atttttaatc cttggtggtt
     2461 ttataaaatt agatgcacaa gttattaata aaaatattat tctaactatc ttagcttgtg
     2521 ctggaattta ttttttatat cttttcgctt ttacttcttt aaaaatagaa gaaaaaagaa
     2581 atttaattat ttttattgtt ttatttttag cggctgcgtt attttggtca gtatatgagc
     2641 aacaatacac ttcttttaat ttttttgcag aaaaattaac agataaaacc atattaaatt
     2701 atgaaattcc tacaatatgg tttcaatctc ttggaggttt atttgttata ctttttgcac
     2761 cttttagtgc ttttatatgg actatatgtg ccaaaaataa taaagaaatt tcatctatta
     2821 ttaaatttgc attaggactt ttgggtgcag ctttggcatt tttaataatg gctttagctt
     2881 caaatcatgc aattagttta aatggcgatg ctaatacatt aagagaaaat ttagaaaatt
     2941 catcacaaat tattttagtt tcaccttggt ggcttgtcag tagctttttg cttatggttt
     3001 taggagagct ttgcctttcc cctgtgggac tttctataat gacaaaaatt gcacctaatt
     3061 taattaaatc tcaagtcatg ggactttggt ttgtagcaag tgcattaggc aatgctttag
     3121 ctggattcat aggtggtaaa gcaagtgaag aaaatatagc ttatttgcca aatttatttt
     3181 accaatgtat gtggatatta cttggtgctg ttataatttt acttatactc aaaaaaccta
     3241 tcaataaaat actaaaaaat taatattaag gagaaaatat gagtatttac aaacaaagag
     3301 tattagaact tagaagatta atgaaagaaa ataatattga cgcctatctc atcttaagcg
     3361 cggatccgca tttgagcgaa tatttaccag aatattacaa aaacagagtc tttatcagtg
     3421 gctttaaggg ttctgttgga acagttctta tcacacaaga agagggcttt ttgtgggtag
     3481 atggaagata ttggcttcaa gcacaaaagg aattagaagg tagtggcata cttttacaaa
     3541 agcaagatgc taaaaatact tttaccaaat ggttggaaaa aaatttaagc gaagatcaaa
     3601 ttttaggcat cgattttgca cttttacctt tatctttgca aaaagattta aagattaatt
     3661 gcaaggcaaa tttaaaacat atagatttga taagtccgct ttggaaagat cgtcccactt
     3721 taccacaaga aaaaatttat gaacacgaac tagaatactg ctcttactca agaaaagaaa
     3781 aattagcatt agtgcgtcaa aaaatgaaaa atttaaatgt tacctctcat ttaatctcca
     3841 gccttgatga tatagcttgg cttacaaatt taagagggaa tgatgtaaat tataatcctg
     3901 tatttttaag tcatttgcta atcttggaag acaaagcctt gctttttgtt gatcagaaaa
     3961 aagtaaattc agaacttgaa aaaaaattaa atttagatgg gttttggctt aaaaattatg
     4021 atgaaatcat catggagctt gaaaaacttg caaatacaaa tttgcttatt gaaccttcaa
     4081 aaatgaccgc tttactcata aattctttag ataaaagcgt aaaaatcatt caagaaatta
     4141 atccaagcac tcacttaaaa gcagctaaaa atacaaaaga aatagcgcat atacaagatg
     4201 ctatgataga agatggagtg gctttatgta aattttttgc ctggcttgaa gaagcgatag
     4261 aaaataaaga actaataagc gaattagaca tagatgttaa agcaagcgaa tttagagcac
     4321 aaagcaagta ctacataagt gatagttttg ccactatagc aggttttaac gaaaacgcag
     4381 catatccaca ttataaagcc acaaaagaga gttttgctta tcttaaaaaa gatggacttt
     4441 tacttattga ttctggtgga caatataaaa acggcacaac agatattaca cgcgttgtac
     4501 caataggaaa ggctaatgca gaacaaattc atgactatac cttggtttta aaagcacata
     4561 ttgccatttc cagtgcaatt tttccaaaag atatagctat gcccttactt gatgcaatca
     4621 cacgcgcacc tttatggaaa gaacaaattg actatataca cggcacagga catggcgtgg
     4681 gatatttttt aaatgtccat gaaggtccac aagttttatc ttatctatcc cctgtgcttg
     4741 aaaaaacaaa agccaaagaa ggtatgctaa cctccataga accaggtatt tataaagtag
     4801 gtaaatgggg tataagactt gaaaatttag ttattcatac caaagtagaa aatcctaaaa
     4861 ataaagattt tggagagttt ttatacttta aacctgttac tctttgtcct tttgaaatat
     4921 cttgtattga tacaaaaatg ttagatgaaa aagaaaaaga gtggttaaac aattaccaca
     4981 aagaagtatt tgaaaaactt tctcctaagc taggtgatta tccaaaagct ctagtttggc
     5041 ttgaaaaaag aacaaaagcc atcttttaag atacttttgt taatatagat aaattttcct
     5101 tgtattaaac ttataattta tttaatacaa ggtttttaaa ccaattgcta aaaaagtttt
     5161 ttttgaaaaa ctcaatttac aactaaaaat tatttaaaat atccaagatc aatcattttt
     5221 tgataaattt tagctacagt tgcccctgaa gtaatatttc tcccaccatg ctccaaaaga
     5281 acggtaacta catattttgg cttagaataa ggagcataag aagtaagcca cgcatgagat
     5341 ctagtataat actcaaattg tttttcatcg accctatttt tatctgtttg tgaaaatccc
     5401 acaacctgag cggttcctgt ttttgctgca actttcacat caagattatg caaataacga
     5461 taagaggttc ctccttgctc attggcaacg gcatacattg catctcttat ataaggcaat
     5521 tgactctttt caaataaagt aaaaatttct tttttatttt catccatttg attttctata
     5581 gttgtattat tattttctat gctttttaaa aaatgaggta taacctctcc accttttgcg
     5641 atttgagccg tatatctagc aatttgcata ggtgttgcaa gaaaattacc ttgacctatg
     5701 gctgtattta aagtatcacc ttgaaaccaa gattgtctat atctttgcat cttccattct
     5761 ttgcttggta aagttcctac aaattcacta ggtaaatcta cccctgtttt cgctccaaag
     5821 ccaatgcgag ataaagtttc acttatttga tcgattccaa cttgcaaact gccattataa
     5881 aaataaacat cacaactata ttttatcgca tgttttaaat ccacaggtcc atggcctgat
     5941 cgattccaac atctaaaaaa cctgcctcca agctcaatgc ttccattgca aacatattga
     6001 gtcgacgggc taatattttt agaatttaaa aaagaaagcc ctactcccat ttttacaaca
     6061 gaacctggag gataatatcc atttataagt ttatttgtaa aaggatgttc aagactattt
     6121 gaaagctcat cccaatcctt aaaagaaatc cctgttacaa aaggattaag atcatattca
     6181 gggaaactcc ctgcagctaa aatagatcca tcatttacat tcataattat agcagctcca
     6241 gcattccctt caaacaatga agttaaataa gactgaagct ctatatctat cgtaagttct
     6301 atatcattag acatagcagg agtgtaagaa agctgttcta cttcttgatt taaggcatta
     6361 accttataaa ccctagttcc tttttctcct tgtaaaatat cattataata gcgttctata
     6421 ccgctttttc ccgtatagtt agaaagtttt gctatttcat tttcttgaac atcttgcaaa
     6481 tttgccttac ctacataccc aataatatgc gaagccaatt ttccaaaagg atattttctt
     6541 tttacaacag gatctatttt tattgtttta ttaagattta actctgaata atgcggaata
     6601 atctcatcgt agggtataaa atctacaact ttaataaaat cttgattata gtaagaatca
     6661 tttctcttat aaatttctgc taatttacta gcatttaaat cgggaaataa atttgtaagt
     6721 tcagataatt ctttatctaa aattccttta tttgactttt taatacttaa ataaggttta
     6781 atagaaatac taaaacccaa atcattaata gccaataaag ttccatttct atctgtaatt
     6841 tgacccctaa caggtggtaa aaattcagtt tttatggcat tttgtttagc aagctcttca
     6901 taatatacat ttgattttat actcaaataa tacacacgac ttaataaaaa tataaaaaac
     6961 aatagtataa atccaacaac tagacgcatt ctcatttaaa ttttaccttt aaaaaacaca
     7021 taagctaaac aacattctat aaaaactgaa acaatatacg cccatcctaa aattttaatt
     7081 ttttcatctc caatataaaa caatatcata tccaaaaaca aaataatgcc gtaagcacaa
     7141 agcacaaaaa caacagggat aaatttacca atttttaaat ttgtcttaat ccaatctgca
     7201 caaagataat aaaaaataaa aaatgccaac caagatgaaa aaataaaaaa attataagtt
     7261 atatcagtaa aaaataaaaa aaataaagaa aaataccatc taaaatcaag ctttgaaaaa
     7321 gttctctctc tctcttctaa taagcaaaac atataacaga aaaaaatccc ataaagtaac
     7381 ggggtatata caaaagtcga accaagaatc tgataaatta gaaaaaaaaa tcctaaaaag
     7441 acataagctc cattaaattt tgctttataa gcacttaaat ttcttctcat ttatcaagac
     7501 ctaaagtttg attgataata atatcttcta aagaatcaaa gccaaattta ttcaaatttg
     7561 aaactaaaat agagtcttta aattcatttt ttaacttagc tttttcactt tgatttaatt
     7621 tatcgcattt ggtaaaaact tttaaaattt tttgatcagg tcgtaaaaat cttttcaaat
     7681 agtcatttag atttacatcg atctctaaat gagtatgtct tgagtcgatt aaatgtataa
     7741 ataactttat cgaggttctt aattttaaaa attcatctaa gttttgattc catatttctt
     7801 ttaaattttt agaaaccttt gcataaccaa accctggtaa atcgataaaa ttgatattaa
     7861 atttttcttc atttcttttg caagctactt cgaaaaaatt tataagctga gtttttccag
     7921 gagttgccga acttttggct aaattttttt gtttacacaa agaattgatt aaagaacttt
     7981 ttccgacatt agaacgcccc aaaaatgcta cttcactaaa atttgagctc aaattctcat
     8041 caaatttcac taaagaagtg ataaatttag cactaattat catttgtctt taagatcaaa
     8101 cacaaaacga gcaggttttt gatccttact ctccactcga taaatattag cttttctatc
     8161 gactattatt ttatcaccaa aaagtttttg attgcttcca agctcattta tataagcatg
     8221 accattaatc tcgtaagtat ctttaataac attataaata aatttatctc cactaccttt
     8281 ataagtttta ccttttaaaa caatcttaaa cctagcattt tgcattgctt cataacgaat
     8341 aggtttgcga tttttatccg tataaataat caatttttca gaatttaaaa tatcatcacc
     8401 tctaattact tctacatttc cactaagaat actttcaccc ttattttcat ctgagtaaaa
     8461 atttaaagct tttacttcaa tttgagttgc ccaagttaca cttacacaag ctaacaataa
     8521 aattatttgt cttgcaacca cgcatttact ccttggatat ttaaaatttt gttttttaca
     8581 tcatagttta aagtatttcc gttaataata cttccattaa ttagagcttt aaaatcagta
     8641 tttgtatata gaactttatt cttaggttcg tattctacct cttgggaaat aattttgaca
     8701 ttattagcac ctatataagt aacatttcct tcaaataaaa ccttgctcat atctttatta
     8761 aaaaattcta aacgattcgc actaagatta aaatctaaat ttaaagtaat aaaatcatta
     8821 aattcatctc tatctgcata tctcacccaa gaatttgcct tataatatgc cttaattgta
     8881 ctagtattac tctcataagc tttcaaattt ttagcctcaa tatttttaaa atttaaagca
     8941 ttagtttgca aattcaaaga atatggatct tgcaaactta aaatcgtaaa agtaattgta
     9001 aaaagagcaa ttaaaattcc aaaaattttt atagccaaag cttattccat tcttcttcta
     9061 gatgattttt ttctactaaa atttctatca tctgtgctac agcagcctta ccaccttttt
     9121 tgctaagcac tatgtctaca tttaaatctt tatgaccatc ttttggctta aaactaagtc
     9181 ctacactttc aagcaaagcc ttatcgttaa aataatcccc aatagccgca cactgagaaa
     9241 aatctaaatt aagtttttgt aaaatttctt ttgcacaagc taacttatcc ttgatgcctt
     9301 gatataaaat ttctattttt aaatctttag ctcttttttc aacacaagga caatttctac
     9361 ctgtaataat agcaattttt ttaccaagct ttagccaagc ctcgatagct gctccatctt
     9421 ttacatcaaa ttctttaata aattctccat tagaagtata aataattttt ccatcagtta
     9481 aacagccatc tacatccaaa aaaatcaatt ctgtcataat ttctactctc ttacaacaaa
     9541 tgcacctgca aatgcaccac ttacagcaaa atcccttgct tcatcttcac ttctaaagcc
     9601 tgttaagaaa acgcgattta acccatccac tgaacttgtg cgtatagtag agctataagt
     9661 tctataagtt ttatatcttg ctgctatcgt ttgtgctcca gctgggtttt taaaggctcc
     9721 aatttgaacc atgaaatttc cacctttata aatttgtcca ttatttgcaa tctctccact
     9781 atttccatag tttacattag aatgtacaat attattaccc gaattacttg atccaaaccc
     9841 tataacctca agccttactg gagctgttcc tgaagcaatc atatcaattt gactagcagc
     9901 tccttttgat aaatctataa tacgattatt tacaaaagga cctctatcat tcacacgaac
     9961 ggtaacttga cgattgttat ttagattggt tacttttaag atggtattca taggtaaagt
    10021 tttatgagcc gcggttaaag cattttgatt ataggtttcg ccattagagg ttttcttgcc
    10081 gtgaaagcct ggcccatacc aactcgcaat accatcagca gtttcgccta ctgctacaac
    10141 agtaggataa taagttttac cattgatagt ataaggcttc atcgttcctt tagtccctga
    10201 agaactagga ctgcttttaa aatcatttga aggataatac acttgagcat tatccaagct
    10261 agaaaaaaaa ctagtgccta aacaaccact aaaaaataaa gcccctagac taacggctga
    10321 caactttagt gtaattgttt ttatttgcat ttttattctc cttgattggt ataattaatt
    10381 tttgattaat actaagatga ttttttgcta ttttattgaa ttctcgaatt tcatcaacac
    10441 ttatattata attttttgct attttatata aagagtcacc agacttaacg gtataagttc
    10501 ttgtcatagg tatagttgta tcaaccttcg caagtttttc tgctttaaaa tttttatcaa
    10561 aaaat
//
LOCUS       DARGEM010000060        10335 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.060, whole genome shotgun sequence.
ACCESSION   DARGEM010000060 DARGEM010000000
VERSION     DARGEM010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10335
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.060"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..667)
                     /locus_tag="SFZ78_001093"
     CDS             complement(<1..667)
                     /locus_tag="SFZ78_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG8211964.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYF"
     gene            complement(669..2174)
                     /locus_tag="SFZ78_001094"
     CDS             complement(669..2174)
                     /locus_tag="SFZ78_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG8211965.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(2171..2698)
                     /locus_tag="SFZ78_001095"
     CDS             complement(2171..2698)
                     /locus_tag="SFZ78_001095"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG8211966.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(2734..3318)
                     /gene="clpP"
                     /locus_tag="SFZ78_001096"
     CDS             complement(2734..3318)
                     /gene="clpP"
                     /locus_tag="SFZ78_001096"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG8211967.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(3318..4652)
                     /locus_tag="SFZ78_001097"
     CDS             complement(3318..4652)
                     /locus_tag="SFZ78_001097"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG8211968.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RLGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            4795..5367
                     /gene="folE"
                     /locus_tag="SFZ78_001098"
     CDS             4795..5367
                     /gene="folE"
                     /locus_tag="SFZ78_001098"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG8211969.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5367..6752
                     /gene="fliI"
                     /locus_tag="SFZ78_001099"
     CDS             5367..6752
                     /gene="fliI"
                     /locus_tag="SFZ78_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG8211970.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPVNIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDAPNTPLLPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(6755..8092)
                     /locus_tag="SFZ78_001100"
     CDS             complement(6755..8092)
                     /locus_tag="SFZ78_001100"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG8211971.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(8094..8822)
                     /locus_tag="SFZ78_001101"
     CDS             complement(8094..8822)
                     /locus_tag="SFZ78_001101"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG8211972.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(8885..10066)
                     /locus_tag="SFZ78_001102"
     CDS             complement(8885..10066)
                     /locus_tag="SFZ78_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8211973.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(10066..>10335)
                     /locus_tag="SFZ78_001103"
     CDS             complement(10066..>10335)
                     /locus_tag="SFZ78_001103"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211974.1"
                     /translation="EIQNLILEKNKQNISLQGNLNINNSYQAKLQVISSDEPDEIFPW
                     TKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
BASE COUNT         3329 a         1805 c         1457 g         3744 t
ORIGIN      
        1 aaaaatatat atttttttct ctttcttctt caaatttttt cattttgggt aaaaatttct
       61 ggatcaaagc acgaaaattc ttaaaaccat aattttgcgg atgaaaatcc gagtatttgc
      121 ggttcatatt agtacggatt tgtgcgtatt cggcacgccc tttttcatcg ataagttgtt
      181 cggtgatatt gattaaagct cttaaataat ccttacttaa aatatcttct tttttactct
      241 catctttatc taaataaaaa aattcactaa aggcatttac ataagatttt atagactttt
      301 caagccccat tcctataact tgttttttat tttctcttaa tttttgaatg agtgaagtat
      361 aatcactatc gcttgaaaca ataacaaaaa tatctatatt tttttcataa aatatggaca
      421 taatttcagt gattaaatac atatcgcttg agtttttgtt ggctgcaaaa ttaaattgtt
      481 gcatagcgat taaagaatat tcagcaattt gctctctcca accttgtata tttttttgag
      541 tccaatcccc ataaatgcgt ttaatgataa cctctccgta atctgaagcg atatcaaaaa
      601 tacttttagc gtattttgca gggatatttt ctgcatctat aaagatagct atacttttat
      661 tttccatttt aattccttgc tctaaagctt aaagcttcta aaatatgggt tttgctaata
      721 ttaagacttt gttctaaatc cgctatactt cttgaaactt ttaaaatttt attaagcgat
      781 cgcaaagaaa gattataacg tgaaattgct aaatctagcg tatctttggc atctttttcc
      841 aatacacaaa aacgacttaa atcttcatct tttaatttcc cattaaattc tttttgcccc
      901 cgttttttac taaaaataaa agcttgtaaa attttttcac tcatttcttt agaacttata
      961 ctcgttttat catccttgct gatctcatcc atagctacat aaagatcaat cctatccata
     1021 ataggagctg aaatgtgatt tttgtatttt ttaatctcat tttcactaca aacacaagaa
     1081 agatttttgg agaataaatt tccacaagga caaggatttt gggcagctat aaagctaaat
     1141 tttgtttcat aagtgatttt agaatttact cttgaaatat gaattttatg atcctctaaa
     1201 ggttctctta aactctctat gatttgcttg ttaaaatgtg gaaattcatc aaaaaacaat
     1261 actccaccat ttgcaagtgc gacttctcca attctagcat tttttgttcc tccgccaaaa
     1321 atacttgctc ttgtagaagt atgatgagga tgacgaaaag cacgaatttt agtaaattca
     1381 caatcttttg aatctaaaga catataagca ttttgcatta aaatttcatt taaactttga
     1441 ggaggcatga tataaacaag gcgtttagca cacatacttt taccacttcc tggacttcct
     1501 tcaaataaga tattatgcat acctaaagca gctatcatac aagctctttt ggctttttcc
     1561 tgccctttga tgtctttaaa atcaagttta aaatccatat tttgtaaaaa aatttcattt
     1621 tctatttgta aagggtttgc aaataaagga tgattgtgag aaaaacgaaa attttcataa
     1681 tttttttctt taaaaaactc tattgcttca tttaaatttt caagtccata aacctctaaa
     1741 tttggtatca tggaagcttt ttgtgctata ctttttggaa caacgatctt agctttttta
     1801 attttagcag agagaaacaa aagcaaagaa aaaagctcat ttgtgctttt aatacttcca
     1861 tcaagtccta attctcctac tacaaaaaag tcatctaatt cttcattttg caaaaggatt
     1921 aataaagcga tagccaaatc aaaatgcgat cccttttttg ggatgcctga aggactaaga
     1981 ttgatagtga tttttttagc aggaaaagca aaatcacaac ttaaaagtgt ggctttgatg
     2041 cgttcgacac tttccttaat cgctgtactt gcaagcccta ctatgcttaa atttggcaaa
     2101 cctcttgtaa aagtggattc tacctctata atgtctaagc cttcatgaaa gcttatgcac
     2161 tttagttttt tcatttctct tttttatgat ttttcttctt tttcttaaat tctttatcga
     2221 atttttgacg cttagcaaag gaaatttttt ctataaataa atgtccattt aaatgatcat
     2281 tttcgtgttg aatagccaca gctaaaaaac cttttgcttc aagttcttta aattctccaa
     2341 agcgatcttg atatttaagc aagatatgat tatagcgttt cacttcttca aaaaaatctg
     2401 gtacactcaa acacccttct gtacaagtga tcatttcttc atctaaagga ataatttcag
     2461 gattgataat ctctagcaaa tcttcttttt tttgttcatc gttttcatca aaaatattta
     2521 caagtaaaac acgcaaagga atatccactt gaatagctgc taaacctact ccattacttg
     2581 ctatcatagt ttcatacata tcatcaagca aggtgtgaag ttctgtatca aatttattta
     2641 caatttcaga gtttaaaaaa agtctaggat tgggataggt gataattttt ctaaccatta
     2701 aaaaaccttt gttttaaatg atctccaaag aaatcattta aaactttttt ccaaaacctt
     2761 atcaatcagc ccatattctt tagcttcttg tgctgacatg aaaaaatctc tttctgtatc
     2821 ttttgctatt tttgcaactt tttgcttagt attttttgcc aaaatatcat taagtatagt
     2881 tttgagtctt aaaatttctt tggcttgaat ttcaatatct gtggcttgac ctctagctcc
     2941 acctaaaggt tgatgaatca taatacgtga attaggcaaa gcaaaacgtt ttccttctgc
     3001 gccacaacta agcaaaaatg ctcccataga agcagcttgt cctatacaaa tcgtacaaac
     3061 atcaggtttg atatagttca tagtatcata aatactaaaa ccacttgtaa ttacaccacc
     3121 tggagaattg atataaagat aaatatcttt tgtaggatct tcagcttcta aaaaaagaag
     3181 ttgtgctacg atagaagcgg caagttcatc atgaatttca ccacttagca taataattct
     3241 atcttttaaa aggcgtgaat aaatgtcata acttctttca ccacgactag atttttcaat
     3301 aacataagga ataaacatta tttatcttct ttctcttttt tgctcacttt ttccgatttt
     3361 tctgtttttg gtataaaaat atcattaaaa agtttttctt caattaaagc cattttcaca
     3421 gcaggcaaag ctccttgttt tttatagttt tctaaatgct cttttggatt cataccatag
     3481 cgatatgctt caaaataaat cgcttgaatc aattcttgat catttacttc aatcttacgc
     3541 aattttgcaa gttcatcaat gataaaagta agttttacac ttttttgtgc ttcttcttta
     3601 aaagaatcac gtttttcttg atatttttct ttacttgctt taagctcttc aatttctttt
     3661 tcgctaaaag tattaaaagc cgcacgcatc tgcatatcag tttcttgttc tactatgcct
     3721 ttaggtaaat caaaattata tttttcaatc aaagcatctg caaatttgcc ttttaattca
     3781 tcatttacaa gtttgaaaag tttttcattt ttgatttgct cttttaattt ttcatctaaa
     3841 acttcaacac tagctttttc ttctcctggt aaaagttttt taagcatttc atcatcaagt
     3901 tctggaattt taagctcttg aatttcatgt agttttactt taaatactgc atctttaccc
     3961 gctaaatgcg ctgcgccgta ttctttaggg aaagttactt tgatatcttt ttcttcacct
     4021 attttcattc ccaccatacc atcttcaaaa cctggaataa attgcttaga accaatttct
     4081 aaaacataat tttcagcttt accaccttca aaagctttat catctacaaa accttcaaaa
     4141 tcaaattttg caaaatcacc ttcttttaaa gctctttttg tttttatagc ttcaggagta
     4201 gcaaaacgct ttaaaagttc atcttttttc tcatcaattt cttttttact tacttttgga
     4261 gtttgatatt cagggatgag tttttcataa ccctcaagtt tgatttcagg tttaaaagaa
     4321 agtattaatt cagcaataat ttctccatct ttacgatcaa atttttcaaa atatggctca
     4381 cctacaagct ctttattttc ttttttaagt tcttgtaaag cgctatttac agcggattta
     4441 aaaagatttt gttctgcatc ttgagtgagc tctctttcat atcttttaag tacggcactt
     4501 acaggaactt ttcctagtct aaacccatcc atttttacac ttttagaagc tttttttgct
     4561 aaattttcta cttcactttt gatcattcct gaaggaattt ttacactagc agtcgcatta
     4621 acagaatcta gttgctttgc ctttacttcc atagtttttt ccttataaaa taaaatttgc
     4681 cttcaatgat agcaaatttt tccttattac ttgcataaaa ttttaaagta atttatgata
     4741 aaattgcaat attacattat tattaaaata taaaaaatat ttttggagaa aaatttgcaa
     4801 aaaaaatttg aagattgtgt taaaaccata cttgaaatta taggagaaaa tccaaatcgt
     4861 gaagggctta ttaaaacacc aaatcgtgtt tttaaagctt atgaatttct tactagtggt
     4921 tatacgcaaa atgtcaaaga cattttaaat gatgctttat ttgaaagctc taataatgaa
     4981 atggttttgg tgcgtgatat agaattttat agtctttgcg aacatcatct tttacctttt
     5041 tttgggcgtg ctcatgtagc ctatatccct aataaaaaag tagtaggttt aagcaaaatt
     5101 ccacgccttg tagaagtgtt tgcaagaaga cttcaaattc aagaacaact tactgaacaa
     5161 atcgcacaag ctttaatgga aaatgttgat gcaaaaggtg tgggtgtagt catagaagca
     5221 agacatatgt gtgttgaaat gcgtggaata caaaaagcta attccaccac tacaacttca
     5281 gctttacgtg gaattttctt aaaaaatgaa aaaaccagag aggaattttt ttctctcata
     5341 aactctgcta aacaggtaag attttaatga atcttgaaaa actacgctcc aaacttggta
     5401 aagaaaattt aagtgctatc tttggagaga ttacaaaaat ttctgctacg agtatagaaa
     5461 ttcgtgggct taaaacaggg gttggagata tagtgaagct agtttccaat gaaaatgaaa
     5521 atttaaacac tctagctatg gtcgtagaaa tcaaggaaca atttagctat ttaagccctt
     5581 tttcttttat agaaggtttc aaaataggcg atcgtgcttt cataagtgat gcaggtatgc
     5641 aaataggcgt tagcgatgaa cttttaggca gagtagtaga tccttttatg cgcccaaaag
     5701 atggtaaagg agctatagaa gtaaccaaat atatgcctat aatgcgtgca cctattgatg
     5761 ccatgaaaag agggcttata gaagaagttt ttcccgtggg tgttaaaacc atagacgcgc
     5821 ttttaacttg tggtgtagga caaaaacttg gtatttttgc aggaagtggg gtaggaaaat
     5881 ccactcttat gggaatgata gttaaaaatt ccaaagctcc tataaaagta gtggcactca
     5941 taggagaaag ggggcgtgaa attcctgaat ttatacaaaa aaatttaggc ggaaagctcg
     6001 atgatacagt gattattgtt gctacaagtg atgatagtgc tttgatgcgt aaatacggtg
     6061 ctttttgcgc aatgagtgtg gcagaatact ttaaagaaca gggcaaagat gtacttttta
     6121 tcatggatag tgtaacgcgt tttgctatgg cacaaagaga aattggacta gctcttggag
     6181 agcctcctac aaccaaaggt tatccgccaa gtgttttaag tcttttgcct caactcatgg
     6241 aaagaaccgg taaagaagaa ggtaaaggca ctataacagc cttttttacc gttttagtgg
     6301 atggtgatga tatgagcgat ccaatcgccg atcaaagtcg ttctatctta gatggacaca
     6361 ttgttttaag tcgtgaatta acagactttg gaatttatcc tcctgttaat atacaaaact
     6421 ctgcttcaag ggtgatgagt gacattataa gtcctgaaca taaactttgg gcaagaaaat
     6481 ttaagcgttt aaactcgctt ttaaaagaaa atgaagtatt gcttcgcatc ggtgcttatc
     6541 agaaaggaag tgataaagaa cttgatgaag ctatttctaa aaaagaattt atgcaaaaat
     6601 tcttaggaca aaatcctgaa gaaagcttcg aatttaatca aactttagag cttttaagtc
     6661 aaattgatgc accaaatact cctttgctac caactcaaaa tataaatgta ggaagtgcaa
     6721 gtgcaacctt gcctaatcct aatttaaaat aaaattattt aataaaataa tctccatcaa
     6781 aactgattaa agaatatttt ctttcatcgc ctatgctttg agttagctct tctatgctta
     6841 aaaaacttag cgtatcagct tctacatatt cacgcacttc ttcagcattt ttatttgcgc
     6901 tgataagttc ttcaaaagtt ggagtatcta taccataagt atcaggaaat ttgatctcag
     6961 gacaagctat ggcaagatgg attttactcg ctcctgcagc acgaagtaag gaaattattt
     7021 ttttagaagt agtgccacgc accaagctat catcaatgac tacgatttct ttgccttcta
     7081 aaactttacg cataggatta agctttaatt ttacttttaa atttctaagc tcttgagttg
     7141 gctctataaa agttcttcct acataatgat ttcttactat tgccatttca agagggattt
     7201 gtaaatattg agcaaaacct atagctgcac ttactccact atctggcaca ggcacgacaa
     7261 agtctgcttt ataagcaaat tttttagcta aagcttcgcc cattttttta cgcacttcat
     7321 acacgctttt accttctact atgctatcag gtctagcaaa ataaatgtat tcaaaagcgc
     7381 aaattctagg agtttgagaa aaaagttcta tgctttcaaa tttatcattt ccctgagtaa
     7441 aaataagcat ttcccctggt ttaacatcac gaataaattc agcctctata agatcaaaag
     7501 cacaagtttc actagcaact atatagcctc catcttttaa acgccctaaa gacaaaggac
     7561 gcaccccatg aggatctctt acaatataaa gtttatcttt gcttgctaaa acaaaacaat
     7621 aagctcctat acattctttt aaactctcaa taaatctatc ttttagactt tcttgcttac
     7681 ttcttgcgat aagatgaaca acattttctg tgtccatatt ggtttgaaaa atagccccat
     7741 cttgaataag tcttgatctt acttcttctt tattgactaa atttccatta tgcgctaaag
     7801 caatatcacc taaaaccgaa gtggctgcta tgggttgggc atcgtttaaa cttgaatttc
     7861 ctgctgtaga atagcgatta tgccctatag cgatttcacc ttctaaagtt tttaaattat
     7921 cgggattaaa aatttgactc acttcacctt tagctttaat agtcttaata tttttaccat
     7981 tactcacact aataccactt gcctcttgcc cacggtgttg catagcaaaa agcgcataat
     8041 acgcataagt actagcattt tttgaattaa taactcctac aactgcacac attttaaatt
     8101 cctaaaaaat cattaattga atacattttt gcttcttgct tactaagcca aatagcgatt
     8161 ttaatcgcac ctttagcaaa agtcgccctt gaagtagcgg tatgattaag ttctaaaaat
     8221 tctccatctt cataaaaacc tactgtatga cgtcctacta tatcgccacc ccttaaactc
     8281 atcacggcaa tctcatcttt gcttctttca cctataatgc catctcttcc acttactctt
     8341 actttttcaa gttctaaatt tctagctttt gctacacttt gagctaaagt catagctgta
     8401 ccacttggtg catctttttt atggcgatga tgcatttcta aaatttctat atcaaaattt
     8461 cttagcattt gactggcttt actagcaaga tagtttaaaa ccgcaacacc taaagacata
     8521 ttggtcgcat aaaaaatcgg catcacttca ctagcacttt gcatcaaatg taaaattttc
     8581 tcatcaagcc ctgttgtacc tattaccaaa ggtttaggta tagttcttgc ataatttaaa
     8641 agctcatgag ttccacttgg ggaagaaaaa tcaataatca catcgctttt ttcaaaaagc
     8701 tctcctaaat ttccaccctt atcataaagt atcgaaattt gtgcttgtgt ttcgcttttt
     8761 aaacattctt caatctgttt tcccattcgt cctttagcgc cataaattcc tattttaatc
     8821 atctttttcc ttgaaaataa aatattgatt ttagcattta ttttgtaaat tttaaataat
     8881 aaaattaagc tttatggttt tttaatttat ataaattatc taacaatttt gcttcttctc
     8941 ctaagccctt gctatgataa aattttaaat ttttactaag atatttttgc tctacccagc
     9001 caccaaaatc atgtggataa agatagtttt gtttttcttg atgattgttg ttaagataat
     9061 taggtatttc taaagcttca ttatttttta catagtttaa agcttcattg atagctttgt
     9121 agcttgcatt agatttgatt gtgcttgcta aataaactac gcattgggct aggataattc
     9181 ttgcttcagg ataacctata tttttaacag cctctagagt cgaaaccgct aaatttaaag
     9241 catttggatc ggcatttccg atatcttcac ttgaaaaaat caccaaacgc ctagcgataa
     9301 aatccgcact ttctcctgca tcaataagtc ttgcaagata ataaatagct gcatcaacgt
     9361 cacttccgcg taaacttttt atcattgcac ttgctaaaat ataatgtgta tcttttgagc
     9421 taacaccttc actatttatg gtgttgcgaa gttttttaag attttcaaga ctgatatgtt
     9481 tttcatttaa aaccaagaca aattcaagca aatttagcat agctcttgca tcagcacttt
     9541 tcagtagaaa atctttagct tctttatcaa tactaaattt cattttttct tgtacacgca
     9601 agagtaaagt ttcaagttcc tttaccccta aagatttaaa ttcaaaaagc atggaacgac
     9661 ttcttatacc agaacttaga acaaaatagg gattttcagt gcttgcgccg attaaaatta
     9721 aacggtaatt ttccatagga attaaaagca tttcttgttg ggttttgcta aggcggtgaa
     9781 tttcatcaat aaaaattaaa ggcttataaa gactattttt ataattatct aaaatttttc
     9841 ttagttcttc gagtttaaaa tttcctccat caaattcata aaaatctaag ccaaattctt
     9901 tggctacaac tctagcaaaa gttgtttttc cagaacctgc cgttccaaaa aaaatactat
     9961 gaggaagttt ttgtaaagca gtaaattttt tgaaaatttc tataagctca tattgtccta
    10021 aaatatcatc aaaattttca gggcgaaagg tcaaagctag gctcattaat ttaaatccat
    10081 atttgaaaat tcactaccat taatttttag ttgaggattg gctaagctat cataagataa
    10141 atttagaaaa aagttattat tttcttttaa aaaatattga tttaaacctc cataatcttt
    10201 tgtccaagga aaaatttcat caggctcatc tgaactgata acttgtaatt ttgcttgata
    10261 agagttgtta atatttaaat tgccttgtag actgatattt tgtttatttt tttcaagaat
    10321 taaattttgt atttc
//
LOCUS       DARGEM010000061        10314 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.061, whole genome shotgun sequence.
ACCESSION   DARGEM010000061 DARGEM010000000
VERSION     DARGEM010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.061"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..652
                     /locus_tag="SFZ78_001104"
     CDS             <1..652
                     /locus_tag="SFZ78_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211975.1"
                     /translation="NDNLKKIYELLVLLNKSNEKNMDFINTLKPDENGEVKLSFEDLK
                     LKFKQLGEKITSLNNQIEITQSLEEREAWSVLKELDKMDENFNKYKVNYSLALFSIVN
                     YRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKSYLIVSPGKSKDEITQLV
                     NTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDELIKQIAAVNEQYNES"
     gene            618..1802
                     /locus_tag="SFZ78_001105"
     CDS             618..1802
                     /locus_tag="SFZ78_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8211976.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            1789..2691
                     /locus_tag="SFZ78_001106"
     CDS             1789..2691
                     /locus_tag="SFZ78_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8211977.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            2628..3023
                     /locus_tag="SFZ78_001107"
     CDS             2628..3023
                     /locus_tag="SFZ78_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG8211978.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            3023..5959
                     /locus_tag="SFZ78_001108"
     CDS             3023..5959
                     /locus_tag="SFZ78_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8211979.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQIPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            5961..6722
                     /locus_tag="SFZ78_001109"
     CDS             5961..6722
                     /locus_tag="SFZ78_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8211980.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            6719..7405
                     /locus_tag="SFZ78_001110"
     CDS             6719..7405
                     /locus_tag="SFZ78_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG8211981.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            7402..8214
                     /gene="thiD"
                     /locus_tag="SFZ78_001111"
     CDS             7402..8214
                     /gene="thiD"
                     /locus_tag="SFZ78_001111"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG8211982.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGVKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHLFKFLDEK"
     gene            8204..8836
                     /gene="thiE"
                     /locus_tag="SFZ78_001112"
     CDS             8204..8836
                     /gene="thiE"
                     /locus_tag="SFZ78_001112"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8211983.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKVTPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            8814..9443
                     /locus_tag="SFZ78_001113"
     CDS             8814..9443
                     /locus_tag="SFZ78_001113"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG8211984.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(9440..9832)
                     /locus_tag="SFZ78_001114"
     CDS             complement(9440..9832)
                     /locus_tag="SFZ78_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211985.1"
                     /translation="MSLTLNISSYTPKIIQDSYYYLQAQILSHNATQFSKYFLYQAKQ
                     ENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFNPDANLSKDGVIIAHISIALN
                     RDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(9889..>10314)
                     /locus_tag="SFZ78_001115"
     CDS             complement(9889..>10314)
                     /locus_tag="SFZ78_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211986.1"
                     /translation="LISLKDNKLYLINSALILENNHTLYSPHSDFKTQLQNRKDLYND
                     NEHISYAYKINKIEKISILENGISANFTGSFIPLQAQLVIKLQNEELIYEIKPKFNEQ
                     LNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRILL"
BASE COUNT         3804 a         1145 c         1849 g         3516 t
ORIGIN      
        1 taatgataat ctaaaaaaaa tctatgaatt gcttgtctta cttaataaat cgaatgaaaa
       61 aaatatggat tttatcaata ctttaaaacc agatgaaaat ggggaagtaa aacttagttt
      121 tgaggattta aaactaaaat ttaaacaact tggagaaaaa attacatctt taaataatca
      181 aattgaaatc acgcaaagct tagaagagag agaggcttgg agtgttctta aagagcttga
      241 taaaatggat gaaaatttta ataagtataa agttaattat tctttagctt tattttctat
      301 agtaaattac cgtttcatta tggaaaaata cggtatggga agtttgaatg aaatttttgt
      361 tcgatttaaa aaaattttaa aagattcttg tagcgaattt gatgaactgt ggatgataga
      421 tgaaaagagt tatttgattg tttcgccagg aaaaagcaaa gatgaaatta cacagcttgt
      481 aaatacaaat cttaaaacta tagaaaattt tagatttatt tataagcaag atattataac
      541 tcctaaaatt cacgtggctt atcttgataa gcaaagtaag ccaagtatta atattttaga
      601 tgagttaata aagcaaattg cagcggttaa tgaacaatat aatgaaagtt gagaattttt
      661 tagctcaaaa aagtataaat tacgataaaa ttgatcgttt tttgatgttt agaatgtatg
      721 aaaaatataa gaaatatttt aaaaatattc ccataattca acttataggc acaaatggta
      781 aaggtagcac gggtagatat ttaacccaac ttttagaaaa tttaaattat aaaatagggc
      841 attatactag tccgcacatt ttcagtttta atgaaagatt ttatcttgat ggtaagattg
      901 caaacgatga agaattagaa caagctcata taagacttga agaaattttt aaacaagact
      961 tgcaaaaatt aagttatttc gaatatgcta cttttttagc tatgatttta tttcaaaaat
     1021 gtgattttat tgttttagaa gcaggagtgg gtggagaata tgatgctact tctgtttttg
     1081 aaagaagaat gaatattttt acaagaattg gatttgacca tattcaaatt ttgggcaatt
     1141 ctttagaaga tattgcaaga accaagctta aagttatggc gcctatagca cttataagtg
     1201 atgagcaaga gcaaaatgtt ttaaatttag caaaaaaaat tgctttttta aaaaaagcta
     1261 atttgcaagt ttcttcctta aatccttttt tgaaagaaaa atttgagatt tattgtgaaa
     1321 agtttgtttt accttgtttt ttaaagcata atttaaagct tgcattaaag gcttgtgaaa
     1381 ttttaacttc acaagaaaaa accttagaag ctttaaaaaa gttacaagag ttaaatttac
     1441 aaggaagatg ccaagaaatt tctccaaatt tttttgttga tgtgggtcat aatcccatgg
     1501 ctgctaaggc tatgcttgat aaatttcaag gagaaaaaat aaatcttatt tataatgctt
     1561 atttggataa ggatattttt caaattttaa atacattaaa gcctattatt gatacaatac
     1621 aaatatataa atataaaagt gcagaacgaa agctggccga tgatgaaatt tatagtattg
     1681 catcaaagct aggtatacaa tgcaaagaat ttgtaaaatt agaagagaat aaaaaaaatc
     1741 tagtttttgg ttcttttatg ctggtagaaa attttttaaa ggagtggtgt ggtaaaaaat
     1801 aaattcacta ttaccattac agatattaac ggttcaagac atttttattt aaatcaaata
     1861 attaaaaaaa tagtttttta tactattgct tttattgttt tatttttagt ttttagtggt
     1921 ttttatatca aatatctcga tagcaaactt agcgatatca gtgaaaagcg tgaggagctt
     1981 ttgaaaaaaa gcaaagaatt ggaattatct aattcgcaaa tgcaaaaaag catagaagaa
     2041 aaaactcagc agtatgcagc tatagaagat aaaatagctt cttttgaaga ggctttgggc
     2101 ttagaagtag aaaataatct tacaattagt gcaagacttg ataatcttca gcttaccaat
     2161 gagcagcaac ttggaatttt gggacaaatt cctaatggat ggcctattga aaataaaggc
     2221 attacaggaa attttggctg gagagagcat ccgcttttaa aaagaaggga atttcatcct
     2281 ggtattgatt taagagcaga aattggtacc cctatttatg caccagcaag tggagtagtg
     2341 gaattttcag gttatagtga taatggctat ggctataatg taattttatt gcataatttt
     2401 ggttttaaaa cagtatttgc tcatatgatg cgcaaagaag tggtcaaagc aggtcaattt
     2461 gttaataaag ggcagttgat aggttatagt ggcaatacag gtctttctac ggggccgcat
     2521 ttgcactatg aggtaaggtt tattaataaa actttagaac ctttgtattt tttaaatttg
     2581 caaagaaaaa atatgaatga tttttttaat caagaaagga gagttccatg gcaatcttta
     2641 ataaaggcgg tatcagccca acatccagct ctagctcaga aacaacagta atttcttcag
     2701 gtgcgagaat tgagggtaaa ttttattttg cttctatgct ccatgttgat ggagagttaa
     2761 gtggcattat tcattctgaa agcattgtgg ttatcggaaa aaatggaaat ttaaaaggtg
     2821 aattacaagc agataaaatt gtagtaaatg ggtgttttga agggcaactt gaggctaata
     2881 gtttagaaat tttagcgggc ggagttgtta atggtgatat ttcaacacaa aaaatttcta
     2941 tagaaaatgg cggtcgcttt aatggaacta gtaaaattaa agaagatact atcaaactta
     3001 ttgaaaataa caacgaagaa taatgcaagc ttcattttat gaatacttac aaaatccaaa
     3061 aatttgtgaa ctttttcttt gtaaagatga aaaacaagca gatttactcg ctcaagtttc
     3121 acgatttaag ggtttaaaaa cctttgtttt acctgatttt agagcgcagt ttggagatga
     3181 tttaagggct ttttctaaag aactttttga tctttgtaag attttaaatg cttatcataa
     3241 agaagaagaa aaaaaaatcc ttatttctcc tttaaatact gttttaaaaa aacttccttc
     3301 aaaaaaacat ttacaaaatt atcatatcga taaaaaacaa aattttgatt tgaaatgttt
     3361 tgaagatgaa atttcaagat tgggatacga atttgtagat atagttcagg ataaaggtga
     3421 aatttcaatt cgtgcggata ttattgatat tttttgtatc aatgaagaaa atcctattag
     3481 aattttgctt tttggcgaag agattgaaag tataagatat tttgatttgc aaagtcaaaa
     3541 gtctattcct aacgaactag aacattttga aatttgtcct tttttaaaat attttgacaa
     3601 agaaaattat gaaattttta aggacaaatt agaagatttt caaagcgata ctttaataca
     3661 tgatatcaat tctttagggt tttggtgtat tgatgatttt tttgattatt tagaacttga
     3721 ttttttagct tgtgaaaagt ttgatattaa tgaatatgaa aaagatataa gttttgtgaa
     3781 tgcaaaaatt ttacctcaag ctaaaaaatt taaagaattg caaagttctt acaataaaga
     3841 tttttttgaa tttcataaaa ataaaaaaat cacactttta gctaaaaacg aagctttatt
     3901 taaagcttta gagcttgaag atactcaaaa tatccatttt gtaaaaagtg atttaaggct
     3961 taatcttatt agtcctgaag agctaattat ttctttaaat caaaaagaaa aacaaaaaac
     4021 aagaaaaaaa gctagtttga ttatagatga gcttaaaaat ggggattata tagtacatga
     4081 agattatggg gtaggtaaat ttttaggtct tgagatgata gtgataagcg gagcaaaaaa
     4141 agagtttgtt gctatagagt atcaaaattc tgataagctt ttattaccag tggaaaatct
     4201 ttatttgatt gataaatatt tgggcgtgag tggatctatt ccaagcttag ataaactagg
     4261 taaaacaagc tttattaaac ttaaagaaaa attaaagact aaacttttag ctatagcttc
     4321 tgaaattgtt attatggcgg ctaaaagatc tttggtgcaa gcaaaaaaaa ttacagtgga
     4381 tttaaataga cagactgatt ttatagctag tgcgggtttt atttatacaa gcgatcaaga
     4441 taaagcctgt catgaaattt tgcaagattt tcaaagtgga aaagtcatgg ataggctttt
     4501 aagcggtgat gtgggttttg gaaaaacaga agtcgctatg aatgctattt atccagtagt
     4561 taaaagtgga ttttgcgcat ttttatttgc gcctacgact ttgctttctc atcagcatta
     4621 taaaacctta aaaaagcgtt ttgatccttt tgatataaag gtttttaaac tggatcgctt
     4681 tacaagtagt gcagaaaaaa aacaagtttt acaaaattta aaagaaaata aagcttgtgt
     4741 agttgtagga actcatgcac ttttaagtgt agaatgtgaa aatttagccc ttgttattat
     4801 tgatgaagag cataaatttg gagtgaagca aaaagaaaag cttaaagaaa tcactcaaaa
     4861 ttcacatatt ttatccatgt cagcaacccc tataccaaga agcttaaatc aagctttaag
     4921 ttctataaaa tcttatagtg ttttgcaaat tccaccagaa gatagaatgg atgtaagaac
     4981 ttttgtcaaa gaaaatgatg acgcactttt aaaagaagct atagcaagag agttaagacg
     5041 cggtgggcaa attttttata ttcataatca tattgcaagt atagagcaat gtaaaaagca
     5101 tttattagaa cttttttcta ctttgcgtat tttgatttta cattctaaaa tcgatgccaa
     5161 gatgcaagaa gaagaaatgt tgaaatttga aaacaaagaa tatgatttgc ttttaagtac
     5221 ctctatcgta gaaagtggga ttgatttacc aaatgcaaat actatcatag tagaaaaaag
     5281 cgatcgtttt ggcatggctg atttgcatca attgcgtgga cgtgtaggaa gaagtgataa
     5341 gcaaggttat tgttattttt taattgaaga taaaaatgct atcacaaaag atgctttaaa
     5401 gcgtctagtt tccttagaaa gtaattcttt tttaggcgca ggttctattt tggcttatca
     5461 tgatcttgaa attcgtggcg gtggaaattt attaggcgta gatcaaagtg gacatattga
     5521 gcaaattgga tatagtttat atcttaaaat gttagaagat gaacttaatg ctttaagtaa
     5581 aaatgaagtg gatcaaaaag aaaataaact tgatttaaaa ctcaatgtta atgccttttt
     5641 aaacagcgaa cttatcagcg aagatcgctt aagattagaa ctttatagaa gacttagcaa
     5701 gtgtgagcaa gttcatgagg tttatgagat cgaaggtgaa attgaagatc gctttggaaa
     5761 acttgacatt tatactaagc aatttttatc tttgattact attaaaattt tagctttaaa
     5821 taaatttaaa agcattagta actatgagca aaatattcaa tttactgctt taaatgatga
     5881 aaaagaactc atcaaggcaa aaagcaaaga tgatgatgat attttagagg caattttaac
     5941 gcatttaaga aaggcttaaa atggattgga ataaaactta tgcagcaatt tatagagcaa
     6001 gaaaagatta tttaaagcct atttttgaaa tcgatcctat tgctttaaaa gatttagtag
     6061 gtatggaaag tcaaaaaaaa gcactttatg aaaatacttt aaatttcatt caagataagg
     6121 gagcaaatca cgcactttta tggggatcta agggcactgg aaaatcaagt ttaattaaag
     6181 ctatatttaa tgaatttaaa gaacagggct taagacttgt cgaattaaat aaagaagatt
     6241 tatttgcctt agcagatatc atcgatgaaa tcagattaga aaattttaaa ttcatacttt
     6301 tttgtgatga tttttctttt gaaaagggag atgatagtta taaattttta aaacctttac
     6361 ttgagggaag catagaaaaa gccccaaata atgtaattat ttatgcgagt tcaaatcgta
     6421 ggcatttatt aagtgaaagc attactgata atcttgatac gcaaatcaca catacagaac
     6481 ttcatttaag cgatgctgct gaagaaagat taagtttgag tgatagattt ggtttgtggt
     6541 taagttttta tcagggaaat ttagaagagt atttaaagat gatagatttt tattttaaag
     6601 attattcttg tgataaagag cttttgcacg ctaaagctaa agaatttgct actctaagag
     6661 caagtagaag tggtcgtacc gcaaagcaat tttatttagc ttttaaggag aattttaaat
     6721 gactggagca caaattttta ccaagctttt aaatttggat ttaaattatc atgattttga
     6781 ttggcttgaa aatcaaggat tgagtgaatt tgagctttta atttctgtcg ttttaactca
     6841 aaatacaaat tggaaaaatg tcttaaaagc tttagaaaat ttaaaaaaag aaaatattgc
     6901 aagcttagaa caaatcaata ctttatccaa tttagaactt gcaactttaa ttaagcctag
     6961 cggattttat aataccaaaa ctaagcgttt aaaaggtttg gtagaaagta tcataaacac
     7021 ttatgaaaat ttagaaaatt ttaaaacaaa tgcaagcaga gaatggcttt taaatatcaa
     7081 aggtttaggt tttgaaagcg ttgatagtat tttaaactat ctttgcaaaa gagagatttt
     7141 ggttgtagat aattatagtt tgcgtttggc tttttactta ggttatgagt ttgaaaatta
     7201 tgaagaatta agagaatttt ttcaaagtga catagagagt gagcaagaaa atttgtataa
     7261 aattttagga aaaaaatgcg aactttacga actttatcaa atttttcatg ctttgattgt
     7321 agcttttgca aaacagagtt ttaaaggaca aaaattaagc cctaagggtg aagaatggat
     7381 caaaatttta aaggaagatt tatgaaagca aaaggaagtg aacttatacc tgttttaact
     7441 atagcaggga gtgattgtag tggtggagca gggatacaag ccgatcttaa aacctttagt
     7501 gcacacaatc tttttggtat gagtgtggtt ttaagtgtgg tagctgaaaa taccgcaagg
     7561 gtgatttctg tacacgatat acctactcaa agcgtggatg aacaaatgct tgccgtgttt
     7621 gaagatatag tgccaaaggc aactaaaatc ggaatgatag gttcttgtga attaatgagc
     7681 tgtgtagcta aaaatttaag cgagtttaaa cctcaaaatg tagttattga tcctgtaatg
     7741 tttgccaaaa atggctatgc tttaatgccg caagaaaatt gtgatttttt caaacaaact
     7801 ataataaaat ttgcagacat tcttactcct aatattcctg aagcagagtt tttgtgtggt
     7861 tttaagatcg ctaatgaaga gcagatgata aaagcagcta agcatttatg cagcttgggg
     7921 gttaaggcag ttttacttaa aggcggacat agtgaagcaa atgccaatga tgtgctttat
     7981 aatggaaaag aaatttatat tttaaaaggc gaacgcatag aaactaaaaa tactcacggt
     8041 acaggttgta cgctttcttc ggctattgct agtaatttag ctaaaggcaa ggatttattt
     8101 cacgctgtta gtgaagctaa agagtatgta agaaatgcga tttattattc acttaatctt
     8161 ggaaaaggtt gtggtcctac aaatcattta ttcaagtttc tagatgaaaa ataaattaga
     8221 tcttagcctt tatttggttg ctactaaggg aaataaaagc gaggagtgtt ttttaaatac
     8281 tttagaaaat gctataaaag gcggagtaag tatcatacaa cttcgtgaaa aagagcttaa
     8341 tgcaagagaa ttttataaac taggcttaaa ggtgcaaaaa ctttgcaagt cttataaaat
     8401 accttttttg attaacgata gggtggatat agctttagcc ttagatgctg atggggtgca
     8461 tttaggacag gaagatttag aagcaaaatt agctagaaag cttttaggag atgaaaaaat
     8521 cataggctta agtcttaaaa agttagaaca acttgagttt atacaaggag taaattatct
     8581 aggttgtgga gctattaagg taacgcctac taaagaaagt tcgcttttaa gccttgagct
     8641 tttaagtcaa atttgtgata aaagccctat aggggttgta gccataggtg ggattgacaa
     8701 agaagcactt gttgagttaa agggtataaa tttaagcggt gtggctgtgg ttagggcgat
     8761 catggatgct aaagatgctt ttttggcagc taaagagcta aagcgtaaaa tctatgaaaa
     8821 tttatctctt aaatgaaact ccttttgaag gggtggaaaa tcttatttta aatgagattg
     8881 ttttttatga ttttagtgtg gatttgagtt tgtatgatgc tttaatctgc acttcaaaaa
     8941 atgctttaaa agctttacaa catgcaaaaa tcactttaaa tttcaaactc aatttatacg
     9001 ctgtgggaca aagtacagct caatacgcta aaaatttagg ttttaaaaag attaaaattc
     9061 catcaaaggc ttatggaaaa gatctttttc ttgaatttaa agaggagtta aaaatgcaaa
     9121 aatgtttgta tttaagggct aaaaatattg tttcaacttt aaatttggat cttaaaaatg
     9181 taggtgtgga tttagatgaa atgattgttt atgaaaatgt ttttaaaaaa ggcgacaaaa
     9241 agcttatcta tcctgctatt tttatattca cctctccttt aagtgtagaa aattttttaa
     9301 aattttatag cttaaaagaa gaagataagg ttgtagttat agggcaaagc acagcaaaga
     9361 agcttttaaa ttttaaaaat ctttatatat gcgaaaatca aagtctttta gactgtgtta
     9421 agctcgctaa gactttggtt taatttttta aattccaaaa attttctttg ggataaataa
     9481 taatgctttt tgtgagtaaa atttcatcat tgacgttttt atcacgattt aaagcaatac
     9541 taatgtgggc tataataaca ccatctttgc ttaaatttgc atcgggattg aagttggaaa
     9601 atttaaaatt aacacattgt gcaataggat aaaaatattt tattttaatc aaagcttttg
     9661 tgtaattaaa atatatattg tctaaacatt ctttattttc ttgctttgct tgatataaaa
     9721 aatatttaga aaattgcgtt gcattgtgac ttaaaatttg agcttgaagg tagtaataac
     9781 tatcttggat tatttttgga gtatagctgg atatgtttaa ggtcaagctc attcatagac
     9841 ttattagtag tattaaaaaa attgtccaaa ttaaaacata agcttttttc acagtaaaat
     9901 tcttttttca aggcaatgtt ttgtttgtct ttttaggcaa atttttaatt tattgttttg
     9961 caggttaaat gagcttatgt ttttagaaat taatccttgt tggtttaatt gttcattaaa
    10021 ttttggcttt atttcatata taagttcttc attttgcaat ttgataacta attgagcttg
    10081 taaaggaata aaactacctg taaaatttgc agatatacca ttttccaaga tagatatctt
    10141 ttcaatctta ttaattttat aagcatagct aatatgttca ttgtcgttat ataaatcttt
    10201 tctattttgg agttgtgttt taaaatcaga atgaggtgaa taaagtgtat gattattttc
    10261 taaaataaga gcagaattaa taagataaag tttattatct tttaggctaa ttaa
//
LOCUS       DARGEM010000062         9980 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.062, whole genome shotgun sequence.
ACCESSION   DARGEM010000062 DARGEM010000000
VERSION     DARGEM010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9980
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.062"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..555)
                     /locus_tag="SFZ78_001116"
     CDS             complement(<1..555)
                     /locus_tag="SFZ78_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8211987.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKCLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCPIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEK"
     gene            complement(555..1173)
                     /locus_tag="SFZ78_001117"
                     /pseudo
     CDS             complement(555..1173)
                     /locus_tag="SFZ78_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(1237..1662)
                     /locus_tag="SFZ78_001118"
     CDS             complement(1237..1662)
                     /locus_tag="SFZ78_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8211988.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKFQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVIDETLRGKGIGQAFLKKIQIWAKNQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(1674..2762)
                     /locus_tag="SFZ78_001119"
     CDS             complement(1674..2762)
                     /locus_tag="SFZ78_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG8211989.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHGWLGISESVLESNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            2861..5614
                     /gene="ileS"
                     /locus_tag="SFZ78_001120"
     CDS             2861..5614
                     /gene="ileS"
                     /locus_tag="SFZ78_001120"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG8211990.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKRLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESTPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLASNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            5608..5718
                     /locus_tag="SFZ78_001121"
     CDS             5608..5718
                     /locus_tag="SFZ78_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8211991.1"
                     /translation="MLENPIPNSIIITTVAVVLAFSALAVFLIKKTKENK"
     gene            5715..7076
                     /gene="gatA"
                     /locus_tag="SFZ78_001122"
     CDS             5715..7076
                     /gene="gatA"
                     /locus_tag="SFZ78_001122"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG8211992.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKDWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            7086..8543
                     /gene="guaB"
                     /locus_tag="SFZ78_001123"
     CDS             7086..8543
                     /gene="guaB"
                     /locus_tag="SFZ78_001123"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG8211993.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            8540..8713
                     /gene="xseB"
                     /locus_tag="SFZ78_001124"
     CDS             8540..8713
                     /gene="xseB"
                     /locus_tag="SFZ78_001124"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG8211994.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            8706..9482
                     /locus_tag="SFZ78_001125"
     CDS             8706..9482
                     /locus_tag="SFZ78_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG8211995.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            9494..>9980
                     /locus_tag="SFZ78_001126"
     CDS             9494..>9980
                     /locus_tag="SFZ78_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG8211996.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSIYIIVI
                     SCLCIGFSYAKYYYYEIYKTKFDIFMFTLKDDNAKTILSIIYHDYPILKILALMLIFG
                     VF"
BASE COUNT         3477 a         1330 c         1821 g         3352 t
ORIGIN      
        1 tttttcatcg ttgcaatatc ctaaagccac caccaaactt gatctttctt tttgaatatc
       61 aagtgataaa taagaattaa gcttttgttt atcaaaacca cctatagggc agcttgctat
      121 atttaaagca ttagcactgt aaagtatgct agctagagct atatgagctt gttctcttgc
      181 ataagatatt ttttcttctt gatttagaga ttttaaaaaa ggcatataag catctaagca
      241 tttttgaatt tctgtttcac tcatatctct ttttctaagt ttttcttcaa aataatccaa
      301 aaaatcaagt cttgaaatga tgataattaa cgcagcgcaa tcttttacat gtttttgctg
      361 gttgcaaatt ttagaaagtt cttcttttct tttctcatct tgcactacta taaatttcca
      421 aggttccagt cctaaggagc ttgggcttaa tcttgctatt tctaaaatag aatttaaatc
      481 ctcttttttg agtttttcat ttttaaaatt tctacaagaa tatcttgtgc taaaaatttc
      541 aagttctttt ttcattattt ttccttgtaa aattcgacga cttcattaaa atttaagcgt
      601 tgagtagaat attttggttc atgggcttta tatcctaagg ataaaattac agcagtttca
      661 aaaggataag ttaaattaag aaaatcatca actttagctt tttcaaagcc acctatcata
      721 caagaatcaa tacctaagct cattgcagct agtgacattt gcatcatagc aagatagcat
      781 tgaagttgtg cataatgata gagttcatta tcattcattg cattggtttt atgagtataa
      841 atttctaaaa ttttttgaaa attttcttcg ctagaacttg agaaacgacg cacttgtttt
      901 tgtgcaaatt catctttgct ttgaagatct tttcttgcta gaaaaataat attatgactc
      961 gcacttgcta cattttgttg attgtaacat agggttgaga gtttaagatt gtgttctttt
     1021 tgttctaata ctacaaattt ccaaggctca aatccatgtg agcttggggc tgactccact
     1081 ttctaagata aaatgcaaat ccttttcatt gattttttta tcattaaaaa gtttacaagc
     1141 tctgcgtttt gaaattagtt ctttaaaatt cattttattc cttaaaatca aaaataataa
     1201 tattaattat aaaatgcaaa gcttaatcaa aaaatattat agtttgatat ttttcttaaa
     1261 aacaaaacca gatttttcaa aacccatttt ttggatataa aattcatgag cttgtgttct
     1321 aaaaaaactt gaacttagtt ctaattcttc atatccttga ttttttgccc aaatttggat
     1381 ttttttcaaa aaagcttgac ctataccttt tcctcttaaa gtttcatcta tgacaaaatc
     1441 acaaatataa agacaatgat tatgataaag tacattaaag ggcatgactc cacaagctgc
     1501 tttgtagctt ccctcatttt cataggcaaa aagtttataa tgttgagttt gtgtagcaag
     1561 ttggaattta tctaaaaaat ctttcaaaga taggttattt cttaattgtt ttatcaaggg
     1621 ataaattttt tccaagtctt cttttagctt aatttctttc atttttaaat cccttaaatt
     1681 tcaaaaattt caggttttaa ttttaaaagt aagcaaaaag ttgccaaaac agcttgttct
     1741 tgcataaatt cacgatctcc atctaaataa agcgtttctt ggataaaagt tccatctcta
     1801 aacattgcac ctatataaat agtgcctgat tttatttttc cctcatcttt ttcgccaact
     1861 actccgctaa tagctaaggc aaaatcagga ttagctgttt taaaaatacc ttttagcata
     1921 aaataaacac aacgttcact gtattcgcca ttactttcta agacgctttc gctaattcca
     1981 agccatccgt gtttgatgcg gttggaataa cttacaatag aaccttcaaa aatttcactt
     2041 acacctgaaa ttttggttaa ggtacttgca caaagtccac ctgtgcaact ttcagcaaaa
     2101 gaaattttta attttttttc taaaagttta gagcttataa aatgtatggg atctttacct
     2161 aaaaatacct tttgtccaaa aagatttttt acgctattta aaaaaccatc aagttttcca
     2221 aaattagcgc aagtggcctt aataagcaca agattatcta aaagcttggt tgattttata
     2281 cttatctcat aagattttgt tagggtttgc agtagcaata tagcgctttc atcatccatg
     2341 ccaaaaatgc aaaaatatgc aaaatttaat tttatatgcc caagaagatt gggtaatttt
     2401 tcgcttggat ttattttaac gacattaatt tttgaatttg aaaaattaca cacaaagcta
     2461 tttttactaa attctgcttt atctggaacc aaggtatcat cttttaagat aagattatca
     2521 tcatttaaag ttgctaaaat tttagcaaca gtcgcataat gcaaagagct tgtaaataaa
     2581 gtgataaaat catactgatt taagagattt tcaagtaaaa aaggtaaatc tttatcggtt
     2641 ttattttgta tgcgaatttc gttgatttct ttaaattttt cttcataagt tctataaata
     2701 taatttttga atttttcgtt tatagtaagc tcatctccta taagataaag caaatgtttc
     2761 ataaattttc ctttttttct tataattata gccaaaaaca aagtagaaat taaagctaat
     2821 ttgagtagaa tttaagatta ttaaaaatta ggtggaaaaa atggactaca aagaaactct
     2881 acttttgccc agcactactt ttgctatgcg ggcgaattta gcggaacttg aaccgcaaag
     2941 atttaaaaaa tggtttgagc aaaattatgc ttatgaaaaa atgaaagaaa atcgcaaaaa
     3001 tgcgaaaaaa agttttacct tacacgatgg ccccccttat gctaacggac atatccatat
     3061 aggacatgct ttaaataaaa ttttaaaaga aactattatc aaaacgcatt attttaaagg
     3121 tgagagtgtg cgttttactc cagggtggga ttgtcatggt ttgcctatag aacaacaagt
     3181 agaagtaaag cttggagaaa agaaaaaaag cttaagtaaa aaagaaattc gtgagttttg
     3241 cagacaacat gcgagtgaat ttgtagatat ccaaagagaa gaatttaaaa atttaggcat
     3301 tattgcagat tgggataagc cttatttaac tatgaaattt gagtttgaag cagcgattta
     3361 tagaacttta tgcgagattg ctaaaaaagg cttactttgc gagcgttcta agcctgtttt
     3421 ttggagttgg gcggcaaagt cagctttagc ggaagctgaa gtagagtatc aagataaaga
     3481 agattattct atctttgtgg cttttgattt agatgtaaaa gcttgcgaaa aattaggcgt
     3541 ttcaaaagca agcgcagtga tatggacaac tacgccttgg actttggtgg ctaatcaagc
     3601 tatagcttta aatcctaatg aaaattatgt gatcaccaaa gagggtttga tttttgcaag
     3661 tgctttactt aaaagtatgg tagaaaaagg acttacaagt ggagaaattc aaaaagaact
     3721 aaacgcaaaa gaatttgaaa aacttgaagc tatcaatcct ttaaatggaa gaaaatctgt
     3781 tttaattatg ggcgagcatg tattgatgga tggtggaagt ggacttgtac atactgcacc
     3841 aggacatggc gaagatgatt attatgcttg tttgaaatat ggcattgagg ttttaatgcc
     3901 tgttgatgat agtggatgtt atgatgaaac tttaagagct aaaaggcttt tgccttctca
     3961 tttgcttgaa gagtttatag gtcttcatat ttttaaggcc aatgaaaaaa ttttagaact
     4021 tttaggcgaa aaacttttac attcttctaa atttatacac tcttatccat tttgttggag
     4081 aacgcataag cctgtgattt atagagctac taaacaatgg tttattttaa tggatgaacc
     4141 aaaacttcaa ggaaaaactt taagagagtg tgcaaaagaa caacttttaa aaacaacctt
     4201 ttatccgcaa agtggggtaa aaagaatagg ttctatggtg gaaaatcgcc cagattggtg
     4261 tatttcaaga caaagggact ggggaacgcc tatagccttt tttagggata aaaacactaa
     4321 agaagtgatt tttgatgatg aactttttga ctttgtagcg gctatttttg aaaaacacgg
     4381 cgctgatgcg tggtgggagt ttgaaatcaa agatttaatt cctacaaatt caaaatacaa
     4441 cgctgaaaat ttagaaaaag tatatgatat tttagatgtt tggtttgata gtggaagtac
     4501 ttttaatgcg gttttaaata gcggacttta tgacgcagga gaaaaaagag caagtatgta
     4561 tttagaagga agcgatcaac atcgtggttg gtttcaaagc tctttgcttg taggtacagc
     4621 gatcaatgaa agcacacctt atgaaagcat tttaactcat ggttttacca ccgatgaaaa
     4681 agggcaaaaa atgtctaaat ctaaaggcaa tgtgattgct cctgaatatg tagcaaaaac
     4741 ctatggagtt gaaattttaa gactttggat acttttaagt gattattcaa gtgatttaaa
     4801 aatttcagac aatatcttaa aacaagtggg tgaacaatat cgcaaaataa gaaacactat
     4861 aagattttta cttgccaata caaatgactt aaaagattta gaagttaaag aatttagctt
     4921 tattgataaa tggatattaa gccgtgcaac taaagttttt aaagcaagca aagaggcatt
     4981 ttttgcttat gaatttgcta aaggttttag tttgctttta aattttttaa gtgcggattt
     5041 aagtgggatt tatcttgata tcagtaaaga tagactttat tgtgatagcg aaaatgctca
     5101 aagaagaaaa tccgctcaag tggctatggc tttgatagca aaagagcttt taaatttact
     5161 tgcttcaaat ttaagctata gtgtagatga ggctttagaa catgctaatg ttttaatcaa
     5221 aggtgatgca aaagatgtat ttgatctaag tttaactcaa gattttgatt atgattttgg
     5281 tatagatgat acatttttaa tgagtgctag agagaaattt tttgaacaaa ttgatatact
     5341 taaaaaagat aaaatcatca aatctacttt ggaattaaat ttaaacatca gttttaataa
     5401 attcccaaat gaggaattag ccgattggtt tatggtaagt caaatcagca atgaaaatga
     5461 agaaattttg gctgaatttg aagtagagaa tgagaaattt aaaatcacca aagcttcgct
     5521 ttgtaaatgc ccaagatgtt ggaaacttca aagtaaagat gaagaaacac cttgtttaag
     5581 atgtgaagaa gttttaaaag ggattcaatg ctagaaaatc ctattccaaa tagcattatc
     5641 attacaactg tagcggtggt tttggctttt agtgctttag cagtattttt gatcaaaaaa
     5701 acaaaggaaa ataaatgata actttaaaag aagctttaaa atactccaaa gaagaacttg
     5761 aaaatttaaa aaaagaactc aatgaaaaag caaaaaaaga aaaaaaaata ggtgcttata
     5821 tcgaacaatt tttagataaa gacttaagtg tttcaggtga aggtgtgcct gtagctataa
     5881 aagataatat cagcgtaaag gactgggagc ttactagtgc gagtaagatt ttacaaggtt
     5941 atatcgctcc ttatgatgca agtgcaattg ttaatttaaa agctaatggt ttttctcctt
     6001 ttgggcgttg taatatggat gaatttgcta tgggaagttc aacagcgagt tcttattatg
     6061 gcaaaacttt aaatccttta aattttgagc gtgttccagg tggatcaagt ggtggaagtg
     6121 ctgctgcggt agcgggtggc ttggctttgg caagtttggg ttctgataca ggaggatctg
     6181 tgcgtcaacc tgcagctttt tgtggttgtg taggatttaa gccaagttat ggaagagtga
     6241 gtcgctatgg tttggcttct tattcttcaa gtttggatca aatcggggtt ttaacgcaaa
     6301 atgtagaaga tgcggcaatt ttatatgatg cgatcgcagg atatgacaaa atggatagca
     6361 cgagtgcaaa tatcgagttt atcaaaaccg ctccaaattt aaatgcaaat aaaaaattaa
     6421 aaattgcagt gattgaaaat tatgtcaatg atgcagatag tgaagtaaaa aatgcacttt
     6481 taaaaaccat agatatgtta aaagctaatg gacatgagat tgtatataaa aatttgcttg
     6541 attctaagtt tgatattgcg gcgtattata tcatcgcaac agctgaagca agtacaaatt
     6601 taagtcgtta tgatggggtg cgttatggca agcgttctga aaatatccaa aatttaaaag
     6661 aaatgtatgt aaatacacgc agcgaaggtt ttggagaaga agtaaaaaga agaattttgt
     6721 taggaacttt tgttttaagc agtggatatt atgatgcgta ttatattaaa gcacaaaaag
     6781 ctagagcttt tattaaggca aaatatgaag aaattttgca agattgtgat cttattttta
     6841 tgcctgtaac tcctacaacg gcttttaaat ttgatactca aaaaagccct atgcaaactt
     6901 atttagaaga tgtttatact atctctgtaa atttagcagg acttggaggc attagtgtgc
     6961 ctgttgcaaa agataaagaa gggcttaata tatcagcaca actgatttgc aaagcttatg
     7021 atgaacaaac cttgttagat ggggctttaa gtttagaaca aatgattaaa cattaaggat
     7081 gaaagatgaa aattgtaaaa agagctttaa cttttgaaga tgtattattg cgtcctgggt
     7141 attctgaagt tctacctaag gaagtaaaaa ttcacactaa actaacaaaa aatatcactt
     7201 taaatatgcc tttaatctct gcggctatgg atacagttac cgaacacaga gctgctatca
     7261 tgatggcaag acttggagga cttggagtga ttcataaaaa tatggatata gcctcgcagg
     7321 ttagagaagt aaaaagagtg aaaaaaagcg aaagcggggt gattatcgat cctatttttg
     7381 taagtcctaa ggcaagtgtt gcggaggctt tagaaattat ggcagagtat agaatttcag
     7441 gtgttcctgt agtagatgaa gataagaaac taataggcat actcaccaat cgtgatttaa
     7501 gatttgagag tgatttttca aatttggttg aaaatgttat gactaaaatg cctttaatca
     7561 ctgctccaaa gggttgtact ttagatgatg cggaaaaaat tttcagtacc aacaaagtag
     7621 aaaaacttcc tatagtggat gaacaaggac gcttggaagg acttatcact ataaaagatc
     7681 ttaaaaaacg caaagaatat cctgatgcca ataaagataa ttttggaaga ttacgcgtgg
     7741 gtgcggctat aggagtaggg caaatggatc gtgtggatgc tttagttgaa gcaggcgttg
     7801 atgttgttgt gcttgattct gcgcatgggc attctaaggg tattattgat acagtaaaag
     7861 caattaaggc taaatatcca aatttagatc ttatcgcagg aaatatcgcc actgcagctg
     7921 cagcaaaagc actttgtgaa gcaggagtag atgcggttaa agtaggtatt gggccaggaa
     7981 gtatttgtac tacacgtatt gtttcaggtg tgggcgtgcc tcaaatttca gccattgatg
     8041 aatgcgtaga agaagcaaat aaatttggcg ttcctgtgat agccgatggc gggatcaaat
     8101 attcaggtga tatcgcaaaa gctttagctg tgggtgcgag ttctgttatg ataggatctc
     8161 ttttagctgg aacagatgaa agtccaggag agctttttac ttatcaagga agacaatata
     8221 agtcttatcg tggtatgggc tcacttggtg ctatgcaaaa gggaagttcg gatagatatt
     8281 ttcagcaagg tactgctcaa gataaactcg ttcctgaagg tatagaaggg cgtgttcctt
     8341 atgtgggaag tataagaagc gtggtgcatc aacttttagg aggtttgcgt tcttctatgg
     8401 gttatgttgg ggctaaagat atagaagatt ttcaaaaaag agccgaattt gttgaaatta
     8461 ccactgcagg acttaaagaa agtcacgtgc atgatgttac tatcactcat gaagcaccaa
     8521 actacaaggt taatcatcaa tgagttttga agaaaattta aaacacgcta atgaatcttt
     8581 ggaaaaatta aataatcaag agcttgcctt agatgaaagt gtaaaaattt ataaagaagg
     8641 tttagagagt atcaaaaaag caagacttga gcttgaaaaa gcaaaattag aagtggagca
     8701 aattgatgag taaaatagca gctttacagt ttccaacttt agctttaagt gaatcaaggc
     8761 ttgattatta tcttaaagct tcaaaagaca atggagtaaa tttagtagtt ttgggagaat
     8821 atgtgatcaa cagttttttt acagaacttt tgcatatgcc aaaaaatatg ataaaagaac
     8881 aaagcgaagc taaaaaagaa agcttgatta aacttgctaa aaaatacgaa ttagaaatca
     8941 tcgctcctta tgtaagcgtt gaagctaaaa gttataaaaa actttgctta aaagttactc
     9001 caaatggtgt gaaaagttat gaacagcaaa ttttaatgcc ttatgaacat tggaatgaag
     9061 aaaaattttt cagcaacaaa actccatcag aattaaaaat ttttactttt aattatgaaa
     9121 aattaaaatg tgctttgctt tttggttttg agacacattt tgatattttt tggcaacaga
     9181 ttatggcgaa aaaaattgat ttggttatcg ttcctagtgc ttgtaccttt gaaagcaaac
     9241 aaagatggga agaactttta aaaacaagag cttttttaaa ttctacaagc attttaagag
     9301 taaatcgcat aggcaaaaca aaagatgagt ggaattttta cggcgatact ttgtttatta
     9361 atgcttttgg tgagatagaa agtaaattgg gttctgaaga agaaatgctt attatagagc
     9421 ctaaaaaaag tgatgaagca agaaaacttt ggggttttga taaaattctt aagaattttt
     9481 aaagaaggtg aatatgagaa aaattttact tcaaattttt atttttagtg tattatttat
     9541 agtaactttt accattaatc gtgttttaat gcaaaattct tttatcccta ctggtttaat
     9601 tagtgataaa aatgaaatct ttttaatgta tcttttaggt gtttttcatg atataagatt
     9661 tttaagcgca gcgtttttac cattcttgct ttgtggtttt ttaagtttaa ttttttctaa
     9721 tataaaaata aataataagt tagtaatata tagtaaaaat ttttatttca ttttttcaag
     9781 catttatata attgttattt cttgtctttg tataggattt tcttatgcaa aatactatta
     9841 ttacgaaatt tacaagacta aatttgatat ttttatgttt actctaaaag atgataacgc
     9901 aaaaactatt ttaagtatta tttatcatga ttatccaatt ttaaaaattt tagctttaat
     9961 gttgattttt ggagtttttg
//
LOCUS       DARGEM010000063         9495 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.063, whole genome shotgun sequence.
ACCESSION   DARGEM010000063 DARGEM010000000
VERSION     DARGEM010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9495
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.063"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..582)
                     /gene="kpsS"
                     /locus_tag="SFZ78_001127"
     CDS             complement(<1..582)
                     /gene="kpsS"
                     /locus_tag="SFZ78_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8211997.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFL"
     gene            complement(579..2648)
                     /locus_tag="SFZ78_001128"
     CDS             complement(579..2648)
                     /locus_tag="SFZ78_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8211998.1"
                     /translation="MKHYSISKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLL
                     NTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLERKRRMQKR
                     SLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKR
                     HFIKPFFKAKDNKIIFLNSLKSLARYKLKENDKFFIWGKRIDYNTLKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     AGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            complement(2645..3157)
                     /locus_tag="SFZ78_001129"
     CDS             complement(2645..3157)
                     /locus_tag="SFZ78_001129"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEG8211999.1"
                     /translation="MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(3147..3908)
                     /locus_tag="SFZ78_001130"
     CDS             complement(3147..3908)
                     /locus_tag="SFZ78_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEG8212000.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVYTFFCAKDFMLKCIEEKQ
                     DLIISYADIIYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAHDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK"
     gene            complement(3910..4512)
                     /locus_tag="SFZ78_001131"
     CDS             complement(3910..4512)
                     /locus_tag="SFZ78_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG8212001.1"
                     /translation="MFIGITQRLICNDSYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHMSPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAEDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(4503..6842)
                     /locus_tag="SFZ78_001132"
     CDS             complement(4503..6842)
                     /locus_tag="SFZ78_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212002.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLAALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSTSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYDCCFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDENFDLYFDINQKDHKIYLQDKALILSEEKTKALNALLKE
                     HGLEISACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFLEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(6857..7618)
                     /locus_tag="SFZ78_001133"
     CDS             complement(6857..7618)
                     /locus_tag="SFZ78_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8212003.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(7670..8443)
                     /locus_tag="SFZ78_001134"
     CDS             complement(7670..8443)
                     /locus_tag="SFZ78_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8212004.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNFKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     SQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLTRVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            complement(8510..9466)
                     /locus_tag="SFZ78_001135"
     CDS             complement(8510..9466)
                     /locus_tag="SFZ78_001135"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8212005.1"
                     /translation="MEPKHQDGLKLFYLVLLNKDIYILTRDPLSRLKTWANHIIDDYV
                     SLDTEFSLDYDFSQGFKWIKYAFGGDKVDLNQFVYSGPITNESMSVDSFISKINYNKI
                     FYIDFHEIYPEGMLDVFKYFKDNYNFPIIQNMDFFQYSLGGSEGYLFAIPRILNIYEN
                     CDNYKIFFFSSLRLYFVKNKNIDIRYTLFPIHNDMQKKLIDISKYFINKKYYKDFFIA
                     MSQVEFEKLYQNSYLFDKVKIYIQHLCKNIDKQINLENEKKIKEKDILLFFKEHSFYR
                     KQLKSILDYELQHIKQHRPDIVASWKYYQEFEKMCKELDGNI"
BASE COUNT         3208 a         1625 c         1067 g         3595 t
ORIGIN      
        1 taaaaattca aaaggatata aagtgcgatg atgaagtttg ttgttaaaaa atggagccaa
       61 aataaaagca aacaaccaat acaaaaaagc atcaaaagcc ataaatttaa atccacctgg
      121 aatttctttt atactttctt tggtaaaaat attttgagaa agataaaaat ttttatcacg
      181 cggtaaagaa gaatttgcat tcaccccatc tttttccaaa gtaatacaat aaggccttaa
      241 atatccttct tcaaaaatcc atatttcaat tcctaattct ttagccactt taatagcctt
      301 agcatgtata atgcgacaat cattatacat taaaatagca tcgatttttt tattttgaaa
      361 aaaatctcta tagaaatttt caagatcttt ttcatcacac ttacacctcg ttccactagg
      421 atagaaaaaa aaatctccgc cgttaaaatt gagtttaaaa actttggttt ggtttttttt
      481 cattttcatt gcaagatgat gaaaaaaatt tcccacaggt ccttgcaaga gtaaaacatt
      541 tttaccgcta aattcttttt taattttagt gctaaatctc atttctttgc taaaaattca
      601 taaaatcttc ttatttttct aagcataaaa gttttaaaat ctattgccaa ttttatatat
      661 ttttttgaaa aataagcttt ttgtaaattt agcattatat ctaaacaaac ttcaatttca
      721 cataaagttt ttgttttagg atttatatat cttggatata tgatcaaagc acctgctaca
      781 agctcttcta ggcttagttt tcttgttctt ctttcgcatc tatatttatc ttttgttaaa
      841 ccccagcccg cataaaaagg catgccataa gtaaaaactt ttttagctct taaaagagca
      901 tcaaaaccac ttgtagaagt aatagtgtga atttcatcag caatttttat agcgctatca
      961 atactgcaat cttttacaat ctcatcacaa aattccaaga tgagtgtttc atcttttaaa
     1021 cctacacggt tgccgcttaa cacatcagga tggggtttaa agatgatata agcatcttga
     1081 tttttagaac gcacctcctt aagcaaatca agagtagata agccaaaacc ccctaaaatc
     1141 atcgaagcat catcttcaac ttgagcaggg attaaaataa tcttttgtcc tattttggca
     1201 ttgattttta agtcttcatg ctttaagcca ttgtattttg aaaagcggtt ctcaagtaag
     1261 atttttataa tattttttgc cctatttagc atattttcat caaaaatttc gttttgcaaa
     1321 agctcttcta atttacttgc tttatttgga tctatgtaaa gtcctttatc atcaacgatt
     1381 aaagaaaaag ggcgcgtaag atcagaacct aaagagattg agcgaataaa tccatcttca
     1441 actaaagaaa ttttgggagt aaaatggagc aaattctcat cttgcgcttt ttttataaga
     1501 gtagttttaa gagtgttata atctatcctt ttaccccaaa tgaaaaattt atcattttct
     1561 ttaagtttat atctagctaa agattttaaa gaatttaaaa aaataatttt attatctttg
     1621 gccttaaaaa aaggcttgat aaaatgcctt ttccataagg taaaacctaa cataaaaagc
     1681 ttgttagaat ttaccttttc tatatcttta tattttgcta aagtttgaat agtatcaaaa
     1741 atattacttt tttgatttaa ataaggatta aaatactcgc tataaagtat ataagcagca
     1801 tagaaaactt cttctaaact tcttttttgc atccttcttt tacgctctaa tttatctttt
     1861 gttagacccc aacctgcata aaaaggcata ccataacaaa tacactcaca ttcttgcatc
     1921 aaagcttcaa aacccatacc agaagttttg gtataaacct tatcaaaaaa ctcaagtaag
     1981 gctatgggat taaaattttc agtaattaaa atacattctt taggtaagga atttatatct
     2041 aaatcacttt gttttttacc gcttaaaaca tcaggatgga tttttatata aattttagat
     2101 ttaggatttt cttttatggc atcttttatc atatcgacgg ttttaaaacc tttagcaagc
     2161 ccaaattcaa gcgaggcatc attggccgtt tgggtgatga ttaaaaccct tttttcatct
     2221 ttttgaaaat aatcatctgg aatatcgaga ttgttattat acttgctaat tttatatttt
     2281 ttgataagct ctatagcttt tttagcttgc ttgatttctt catctttaaa ttcacaagta
     2341 tttaaaagat tttcaagctt tgaaggcatt gttgcatcat aataaatgcc tatatcatct
     2401 ttaaccatag aaaaacttgg gctattttca acccctaagt ttaatgagcg gataaatcca
     2461 tcttctaaaa gtatgaattt agccttatat tttttagcta aattcatagc ttttaaacct
     2521 gattttttgc gtccccaacc aaagaaaaga tcatcttttt tgatttttaa atttttctta
     2581 tacaaagaaa tagtataaaa atttctagca ttagcaataa gtttttttga tattgagtaa
     2641 tgcttcacaa tgccaatttc tttattataa gttcaacttt ttcttctaaa ttatttcgac
     2701 aagaattatc aatcactaaa tcagcctctg gtttatcaaa ttctatatca acaccaacta
     2761 cattatcaat ttctttattt aaagccttag tataaagccc tttttgatct ctttgcatta
     2821 attcatgcat atcgcattct atataaattt cataataatt ttttaattgc tttctattgt
     2881 aatcataaat ctcattaaac attgaaatcg tagtgacaat aactatcata ccttgatcgt
     2941 ttaaaaattt tgcaaattta gctcttttca aagccatatc tatgcgacct tgtttatcgt
     3001 atgcataatg tcctaatatt tctcttaact catctccatc gagataaata agatttttat
     3061 attttagttt taatttttca tacaaagctt gacctatagt tgtttttccg cttccagcta
     3121 aaccagtaag ccaaataata taaggattat ttttcaattt gcacctctaa atcactcata
     3181 aaatcaattt cacaccaatt gccatcaatt tccactgctt ttgcgttgtt atatttttca
     3241 attaaagcct gcaaaaaact tgtcatatac atattttcaa aatttttatt atcatataaa
     3301 atatctcggt caagcatttc ataaaaagca ataacttcgg aaagaaattg ataagaaaat
     3361 ttaaaaagtc ctatatattg agcttctatc tcatcatggg cattagcttt ttttccaagt
     3421 tctataatat aaccatttgt catctttaat gtttcagcat cttctaaagg atttgcaaag
     3481 cgtttgctcc aaagcttacg ccaagactta tcaactacta tagcaagttc ttctttggca
     3541 tttataagct tttgcacgca atcttgaaaa taaataatat ccgcataaga aataatcaaa
     3601 tcttgttttt cttcgatgca ttttaacata aaatctttag cgcaaaaaaa agtataaacc
     3661 atattggttt tatcatattt tgaattaata aaaaaatgct caatatcata tttattaaga
     3721 taatttttta gcacatcgtt taaatatcca cccacaacag ctatttcatt tatacctgct
     3781 gattttaaag cttcgatttc ataatctatt atttttttat tcttatactc aaccatacac
     3841 tttggttgat cttttgttaa aggcatcagc cttgatccaa aacctgctgc taagataatt
     3901 gcattcatat tattccttga ttaaactaaa ccactctctt aaaatttgaa tattattaag
     3961 cccattttct ctttcaatat gccacattat accaaaaata ttttcatact tatgcttaaa
     4021 agcttctatg gtattatctt ctgctaagca aagttctaca agatcttcgc ctaatttttc
     4081 aatagcaaaa ttatgaaaag aattgcttat aaatttttct tttgagaaaa atacttcatg
     4141 tttgcctata tgattttcac aaggactcat atggctgtta aaataatgag ctatcatctg
     4201 agcccctctg caaattccta aaagtggtat tttttcttct aaacaaattt ctataacttg
     4261 cttttcatat aaatctctct ttttggataa aacattagga ctataaaaac ttaaatcatt
     4321 gccaccactt aatatcacag cttttattag atgtttataa taagaaaaat ctatttcata
     4381 gctaagagga agaggagtaa aatttttaaa taaatcttta ttaaataatt ttccccaatc
     4441 caaagccaaa cattctcttt cttcatgata actatcgttg caaataagcc tttgagtaat
     4501 acctataaac aaaatatttg ctcactttca cattctatat ttattttttt agcttttaaa
     4561 tatttttcaa aattttcttc tccaactcct ataacagcag gcattccaag ttctgaggca
     4621 cgaatggcca tatgcgaatt agcaccccca taacatgtaa taagtcctgc tatatttttt
     4681 gtaaataaat aatcatatcc gggatctgcc gcataaatta aaacaatctt tccttctaaa
     4741 tctttatcat tttctttagc cgtaaatgca gttatgcttt tttgtgtaat aaaatttgga
     4801 ataatactat gattataaaa agaaaaaatt tcatcagcat tacaaagtaa agaaggaagc
     4861 tttatagctt gtgtaagttc atattctttt ttattgcgat taatttcttc taaaaactgt
     4921 tcttttggat ttatagaata aagactagaa taaagattta aaatgctttt tatatcaaga
     4981 tgagccaaat cttctttttc aataccataa tacttgccta attcttctat ataaactatg
     5041 gctttagaaa gcaatctagt aaattcaaat tttaccaatt ctctaccttc aatagcttgt
     5101 tttaaaaaat caaaaaattc acaagcacta atttctagtc catgttcttt aagtaaagca
     5161 tttaaagcct ttgttttttc ttctgataaa ataagggctt tatcctgtaa ataaatttta
     5221 tgatctttct gattgatatc aaaataaaga tcaaaatttt catcatatct tggagataaa
     5281 atattataag ttcctgctct taagtgtcca aaatctttca aaaattgatc tttgttgtga
     5341 aaattaagat ggtttgtttg tttgcttaaa tttttactca ctgtattgag tgaatttaaa
     5401 aaatcatctt tttcctcttt ggttataaaa tcaatctcaa ctaaagaatt taaaagttgc
     5461 attgctacaa atgcagccct agccaccccc gcaaaaggca aggttccata acgcttgcat
     5521 tcttcaataa gccaataaat tttatcaatt aaagaaaaat tagaattaat aatgccatca
     5581 tatctttctt ttagcttata agctttttgt atgtctttta aataaaaccc tgatctagga
     5641 ttaataatct tatttgtaag ttctaataat gaaaattcta atcttttgat ttcattttca
     5701 ttaaaaccat gatttaaaag ttcttctaat tttttagaac tattaaagtc ataacaagaa
     5761 taaacaatat taaattcaat cttatcgtgc aattcatgat ttttattaag cttatctaag
     5821 taaaaattga caagtttttg tgcaatattt tcatctaatt tttttggtat aaaagaatta
     5881 aaagataatc ttacatctac ataaggaatg cctaaaaaag aatggattaa aggatgggat
     5941 cttagatctc tataaccata attatctctt tgatacgccc agatattatc cgtaatgatt
     6001 tctttatata aactaaaagc taaacgctta ggtcttaacc ctatgatttc agctggattc
     6061 caatcaggca ttaccccaaa aatggcttta tctcctaaaa ccctagatct tgattctttt
     6121 aaagactcaa aacgtttata aaatctatat aaagcttctt ttggtaaaga atgaaataaa
     6181 ttattttttt catgcataac caaaggacgc acttgtaagc aaaaaagttc ttccttatca
     6241 tcttgaatag caaatgcaaa ttcaacatct aaaaaacaac agtcatataa aacttctaat
     6301 tcttttataa gttctataat tttttgaagt ctaatatctt taaattctaa ataatctctg
     6361 taatgatagt aagtttttgc actcgtactg cttccatctg taatagagct atttgaacca
     6421 ttttcatcat attgaagaca aaaataaggg gaaaaattat ctttatcaac gctaaaacca
     6481 actccacaaa gagtaatgtt ttcaagcata ggttgaacta aaatttcatc actttttgat
     6541 ggcatagaat tggcaacttc atataaggct gctagtaatt catctttaga atcagcttta
     6601 atatttgcca aagaaagaaa agcacctgca ttggagtttt tcatgctatc ttcacttaaa
     6661 gaagaacttc ttataatgag tctattagcc tttaaggttt gaatgtcctg taaaacttta
     6721 tcttcatttg atattaattc ttcaagcgaa gttaaaacca aaggtagaac ttttgctttt
     6781 tttaattttg tttgtaaatt ttttaaattt tgtgctttgg ttttaaaatt taactccgcc
     6841 atgtttttcc ttagttttat atttttttag cactccaaca acgagtggta tattttatgc
     6901 taaattcctt aggaagtctt tgtgaaattt tatcactaat tttattaaaa agttcatttc
     6961 cttcatcagt ctccaaatcc caataaggat ttttaacact tttccatgca ttaatataat
     7021 tttcaatgct ttgatgaaaa taaaaatcct cttcaatata aacaatatta tcaaaaagat
     7081 cctttcgact ctctataatt ggtctttgat cttctcttct tgttcccctt gtataatttg
     7141 gtacaaattc tacaatagta tcttcagcta ttttttgcac aggatcgttt aaatccctgt
     7201 gattccacat acaagaaaaa tatccctctg attttaataa gcgatgtgct tcctctaagg
     7261 cttcatttct atccattaca ttaaaactac taccaaaagt cacccaatca aattcactat
     7321 tttggagtgt tgagtttaag cctgttgctc taacccagtc aatcttttga tccttggttc
     7381 tttctatccc gatctcacgc atcgcatcat ttggttctac agataccacc ttacatcctc
     7441 tttctaaaag cataatgctt aaatttccag ttcctgcacc gatatcagca actttaatat
     7501 ctttttttcc aactaaacta ataagcatat ctatagtttt tggagcataa tttggtctat
     7561 agctataaaa tttagcatgc ttggtataat cccacacttg ttctactagt ttttgcattt
     7621 tatttccttt tttcatcttt gacaagcttg atgaaaaaaa ggaggtattt tatgcttttc
     7681 tagctgtcca tgctcttatt ttataaggaa tctctatact ttgcatatga gaaattttag
     7741 cttctatcat ctctaaaatt tccttccatc ttttttcacc tgcttgtgct tgtatatcat
     7801 ttacagaatg ccaagctcca agataacgct ctttatccca aaactcttta tagtcacact
     7861 ccataaaaaa gcagtctgtg aaatctcctg ttgaaacaag aatttcttcc cattttttaa
     7921 cattttgagt gccactgctt acacgagtaa gatctggaac aatatgttta atctcctttt
     7981 caatttcatc aaaaaccgaa ccctctacaa tgtggcgagg attccaaatc gcagtaaaat
     8041 accccccccc tgtcaatata cgattaaatt ctgggagaga ttttttagga tctgtccaat
     8101 ggaaagaact agccatgatg acccaatcag cttgactatt gctcatgcag gtttcttcgc
     8161 cactcccttt atgccaagaa atatttgata aattttgtgt aaatttttgc ccttcttcgc
     8221 gcatattatc gtttggttcc acagcactaa tttggcatcc aaacatttct cccaacatct
     8281 tagtaagttt tccagttcca gctcctactt caacaatatt taaatcttta aaatttttat
     8341 ttttatcatt gatacaagct acaagttttt caagtaaaaa tggactataa gcaggcctat
     8401 tatgataatg ctttgcaacc tctgtaaaat ccccttgttt catattgatt cctttctcta
     8461 attttaaaca caattatatc ttttttttat taatttacaa atctttctcc taaatattac
     8521 catccaactc cttgcacatt ttttcaaatt cttgatagta tttccaagaa gctactatat
     8581 ccggacgatg ttgcttgata tgttgcaact cataatcaag gatacttttt agctgctttc
     8641 tataaaaact atgttcctta aaaaacaata aaatgtcttt ctcctttatc tttttttcat
     8701 tctccaaatt aatctgttta tctatgtttt tacataaatg ttggatatat atttttactt
     8761 tatcaaataa gtagctattt tgatacaatt tctcaaactc tacttgtgac attgctataa
     8821 aaaaatcctt ataatatttt ttatttataa aatatttact tatatcaatt aattttttct
     8881 gcatatcatt atggattgga aatagagtat atctaatatc tatattttta ttttttacaa
     8941 aatatagtct taaacttgaa aagaaaaata ttttataatt atcacaattt tcatatatat
     9001 ttaaaattct aggaatagca aataagtatc cttcacttcc tcctagacta tactgaaaaa
     9061 aatccatatt ttgaataatt ggaaaattat aattatcttt aaaatattta aatacatcca
     9121 gcatcccttc tggataaatt tcatgaaaat ctatataaaa aattttatta taatttattt
     9181 tagaaataaa actatccaca ctcattgact catttgtaat tggtccagaa taaacaaact
     9241 gattgagatc aactttatct cctccaaaag catatttaat ccacttaaat ccttgactaa
     9301 aatcataatc aagactaaat tcggtatcca atgaaacata atcatctatg atatgattag
     9361 cccaagtttt taatcttgat aatggatccc tagttaagat atagatatct ttatttagca
     9421 ataccaaata aaacaacttt aaaccatctt gatgttttgg ttccatacca tgttcaaaaa
     9481 caagaatatt tttat
//
LOCUS       DARGEM010000064         9488 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.064, whole genome shotgun sequence.
ACCESSION   DARGEM010000064 DARGEM010000000
VERSION     DARGEM010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9488
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.064"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..219
                     /locus_tag="SFZ78_001136"
     CDS             <1..219
                     /locus_tag="SFZ78_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212006.1"
                     /translation="FFAISQVDNKFIKNLNHGMGLSTKLFFKKHLLQILKEPLQDKIC
                     KKEVSYKCDELVYTFKEENHQIILNITN"
     gene            308..1624
                     /locus_tag="SFZ78_001137"
     CDS             308..1624
                     /locus_tag="SFZ78_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8212007.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1600..2247
                     /locus_tag="SFZ78_001138"
     CDS             1600..2247
                     /locus_tag="SFZ78_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8212008.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            2289..3809
                     /locus_tag="SFZ78_001139"
     CDS             2289..3809
                     /locus_tag="SFZ78_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212009.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFSPCIPEDKEFSKFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFKLQNNFYSLLGLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDAPLRV"
     gene            3790..5979
                     /gene="hypF"
                     /locus_tag="SFZ78_001140"
     CDS             3790..5979
                     /gene="hypF"
                     /locus_tag="SFZ78_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8212010.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            6057..6800
                     /gene="hypB"
                     /locus_tag="SFZ78_001141"
     CDS             6057..6800
                     /gene="hypB"
                     /locus_tag="SFZ78_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG8212011.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKEGKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            6800..7081
                     /locus_tag="SFZ78_001142"
     CDS             6800..7081
                     /locus_tag="SFZ78_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG8212012.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            7065..8156
                     /gene="hypD"
                     /locus_tag="SFZ78_001143"
     CDS             7065..8156
                     /gene="hypD"
                     /locus_tag="SFZ78_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG8212013.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            8153..9127
                     /gene="hypE"
                     /locus_tag="SFZ78_001144"
     CDS             8153..9127
                     /gene="hypE"
                     /locus_tag="SFZ78_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG8212014.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            9127..9471
                     /gene="hypA"
                     /locus_tag="SFZ78_001145"
     CDS             9127..9471
                     /gene="hypA"
                     /locus_tag="SFZ78_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG8212015.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         3309 a         1098 c         1802 g         3279 t
ORIGIN      
        1 ttttttgcta tttcacaagt tgataataag tttattaaaa atttaaatca tggaatggga
       61 ttgagcacaa aattattttt taaaaaacat ttattgcaaa tattaaaaga acctttgcaa
      121 gataaaattt gcaagaagga agtctcatat aaatgtgatg agctagtgta tactttcaaa
      181 gaagaaaatc atcaaattat tttaaatata acaaattgag tatattaaat gtttatattt
      241 aaaaaagtaa tttttaagta gaattgtttt ttaaaaaaat atttaaaaaa agagataaga
      301 taacatcatg gcaaaaaaac aactctcctt aacaagactc agttttccta tattttggga
      361 tttgctttct aagtatttaa ccgtgattat caataccgct atggtgtcgc attattctaa
      421 ttttcttgtt ggtgctatgg gcgctggaaa tcaaatttta gatcttttta tcactatttt
      481 ttcattttta agtgtgggtt gtagtgtggt gatcgcacaa gcaattggtg caaaagatca
      541 tgttttagca agaaaagtga ttcatcaaag tttgttctta aatgcacttt taggctttgt
      601 atgcggtgtg cttattttat ggcatgggga gtatttgctt tatcttttaa aaattccaca
      661 agaattgctc aaagatagcg aaatttactt acatatgctt gcaatttgtt tgttttttga
      721 tgccataggt attgttttag ctgctattgt aagggtttat aatatggctt attgggtcat
      781 gtttataggt tttttgatgg atatagtggt gatttgtgga aattattatg ttttgcatta
      841 tacaaagtca gaactttttg gaatagggct tagtaatatt tttgctcgca ttgttgctat
      901 agttgctttg tttgcgatac ttttttataa acttaaaatt catcttaaaa tcaaagaaat
      961 gataaaactt gaaaaagaag ttttaaaaaa ggttttaaat ataggaggat tttcagcagg
     1021 ggaaaatctt ttgtggatag tccaatatac tatagctttt gcttttgtag caagcttagg
     1081 tgaggcgagt ttgagtgtgc aaacgattta ttttcaaatt tcaatgctta tcatgcttat
     1141 aggacaagct acgagcatag ctaatgaaat catagtaggt aaattagtcg gtgctaggta
     1201 tgaaaatatc gcttataaac atgcttggcg tgctttatat tttagtgtaa tagcgagtgc
     1261 tttagtggcg tttttaaact atctttgtca agattttact atgcaaattt tagggcttaa
     1321 agaagagcta aaaaatttaa tgataccttt atttgctctt tcaatctttc ttgaaatttc
     1381 acgaactttt aatatagtta tggttaattc cttgcgcgca agtggcgatg ctaagtttcc
     1441 attttttagc ggacttgttt ttatgatggg ggtatctttg cctgtgggtt atgtgctttg
     1501 ttttcatttt aatcttggaa ttttaggggt ttggatagga ttttgtgcag atgagttttt
     1561 gcgtggaatg gtaaattcat acagatggaa aagtaaaaaa tggcaaggca aagctctagt
     1621 ttaaaatcat ttatttataa agatgagtgc tatttttatt ctaaaaaatg cataaaaact
     1681 ttaagattaa ggctaaatga aaagggtgaa tttgttctta gtattcctta tttttgcacc
     1741 tttaaaagtg tttatgagtt tttagataaa tcaagttctt ggatgaatga ggcaaaaaca
     1801 agatttgaaa aaaaagtttt aaaagatgat gagttaatct ttttagctaa aaaatatcaa
     1861 attatttttg atgaaaatgc caaaaaaatt tattttgata aagataaaat aatttgtcaa
     1921 aataaagcaa aattggattt atttttaaga caaaatgcta aaaagatttt tactttttat
     1981 cttaaaaaat ggagtaaaaa aacaggctta ttttacacgc atttaagcat taaaaatatg
     2041 aaaacacgtt ggggttcttg caatcacaat aaagcttata ttaatttaaa tttaaaactc
     2101 attcaaaaaa gtttaagagc tattgaatat gtgattttgc atgaaattag ccatttaaaa
     2161 tttcccaatc atagcaaaga attttatact tttatagagc attttatgag tgattttagg
     2221 caaagagaga aagaattttt aagttaaaaa tgttatattt atagtttatt tttcaaaaaa
     2281 ggcataatat gactttggat tttgatttta tttataatgc agataatgat atttttgaat
     2341 atttattgcg tttttatgcg aaaaattaca attatatcct tagtaaagaa gaaaatactt
     2401 atcatttttc tatcgatgca gatgaagaaa atttaaagac tttttgtgat tctttgaatt
     2461 tcatgagtca tagcgttttt ttgaaaaaat ttgatgtaaa agcggggcag ggttttagcc
     2521 cttgtatacc agaagataaa gaattttcga aattttctta tattacgcat ttaaattcta
     2581 atgcttatca agaaaaaaaa cttttaaaca aaaatgaatg gggtgtgttt tgtgagtgtg
     2641 aattttcaag caatttatca gaatttgaaa aaatcaatga agaaaatttc aatacttttt
     2701 taaatcttgc ttttgatttg ttaagtcaag aaaaaaagat ttatttaaaa gataaaaatg
     2761 gcatttatga attttctttg tttaagaacg aatttatagg agatttttta cttccttgtg
     2821 atattaaagc tataaattca gtttttgttt gttcaaatga aaatttaaaa cttcttgcaa
     2881 gtttggaaaa acctttgatg aagctaaggc ttaatgctat gtttagaaaa aatcacaatc
     2941 ttgattttaa tgattttaaa atcagacttg ctagggattt gttttgtttt gctttaggtt
     3001 taaaactttt tgaaaatgaa tataaatttt taagcgtaaa aaagatagaa gaatatcaaa
     3061 aagattttta tatcagtgct ttagatgagc aagtggtggt tttggaaggc tttgaattta
     3121 tcaatgctaa ggcaagagag cttatttttt ctaaagaaga taaaaatatg gcaagaattt
     3181 cttatcttgt aagccgttat aaagaaaagg cttttatttt agagctaagt aaagatgatg
     3241 aagatatttt gcttatcaac aaagagctta atttgcttaa actttgctta ccaaaacaca
     3301 gcaaagagct ttatgaagag atcaaaaaag atgaaattgg tgcaaggctt ttagaaaatt
     3361 ttaacaagga atttcctctt ttagatgaaa attttaagct tcaaaacaat ttttattcct
     3421 tgcttggctt gctgggtaga gtgctaaatt tgggtagaaa tttacaagag agtgctagtg
     3481 agcttttaaa aatcgctgat gagtcaaaaa tgcctcgtgg agtaaagatt gattatcgtt
     3541 tgaaagaaga taaaagtttt gattatacaa ggactttaag atctgccatg agttttatgt
     3601 tagcaggtgt agatagtgct aatatcgctt atggagcggt tgagagtttg gcttatttct
     3661 tgcgtgatac ttatgatgaa ttaagagaga aaaagcaaag tgatttagca cttataagtg
     3721 gatctttgtt tgaacataaa tctttactta aaaatacttt aaaacatctt aaaaattgtc
     3781 agttaagcga tgcgccactt agggtataag atcaaaattt caggtctagt tcaaggggtg
     3841 ggttttcgcc ccttagttta tgaactagct ttgaaatcaa agctttttgg agaagtaaga
     3901 aatgatggtt ttgggataga aatcatcctt gcttgcactc aaaaagaatg tgaaaatttc
     3961 atagaaaatt taaaaaatca tcttccacct ttagcaagaa tagatcagct tataatcacg
     4021 caaatttcta tttcaaacta tgagaatttt agcattactc cttctttaga gaatacaaaa
     4081 agcacgccta tgttaagcga ttttgcgttt tgtaaggagt gtaaaaaaga attttttgat
     4141 gaaaaaaatc cacgcttttt gtatcccttt atcacttgca cacattgtgg gccacgcttt
     4201 agtattataa aaagtcttcc ttatgatagg gcccatactt ccatgcaaga attattgatg
     4261 tgtgagtttt gtaaaagcga atacgaagat cctaaaaata ggcgttttca tgcccagccc
     4321 atcagttgtc ctaaatgcaa aatcaatgtt tttcttaaaa atccaaaggg tgaaatttta
     4381 gccaaagatc aagaagcttt tatacaaagt gcgaagtttt taaaggaagg taaaatttta
     4441 gccattaaag gcatgggcgg ttttcatctc atgtgtgatg cgtttaatga agaagcttta
     4501 aaaactctaa gacttagaaa aaatcgcccc aaaaaaccct ttgctttgat gtgtaaagat
     4561 ttacaaagtg ctaaagaact tgcctttata gatgaaaaag aagaagcttt gcttggtggg
     4621 gttttggctc ctattgtgat tttaaaggca aaaaaagcct tttctttaat cgctcctgat
     4681 gttgataaaa tcggcattat gttagcttat acacctttac atcttttgct ttttgagtat
     4741 tttaaaggaa gccttgtagc aacgagtgca aatttaagcg gagaaagtat tattaaagat
     4801 gagtttaatt tgtgtaaaaa acttgataaa gtttttgatt tttatttgga ttatgatagg
     4861 gaaattatca atgcaagtga tgacagcata gctcaagtgg taaatggtga aactatgttt
     4921 ttgcgtactt caaggggttt aaatcccttt tatttggaaa gaaattttaa taaaaaaggc
     4981 acttttttag ctttgggtgc ggaacttaaa aatgaatttg tgatttttta tgaaaataaa
     5041 cttttaattt ctccttatat aggggatttg aaaagtcttg atgtgcatga gagatttttt
     5101 aaacttttag aattttttaa acaaaattat gatttgaaat ttgatgcgat tttgtgcgat
     5161 aaacacccgc attttagcta tgcaaaagaa tttgaagaaa ggattaaaat ttctcatcat
     5221 tatgcgcatt tttgtgcggc ttattttgaa tacgaagaaa attttgcaaa agatgaaaag
     5281 gctttagctt ttatttgtga tggaacaggt tatggcgaag atggtaaaat ttggggtgga
     5341 gaagtttttg taggaaattt aaaagaatat gaaagaattg cacattttga aaatttcact
     5401 cttataaata gtgatattaa aaatatacaa aatttagcct taagtcttat ttttcattat
     5461 gatttagaag ataaggctaa ggatttttta gcaaaaattc caaaaattaa acttaaaaat
     5521 cttaaaaaaa tttattctca ttctaactta caaacaagtt ctttaggacg cattatcgat
     5581 gcttttggaa gtattgtttt taacttagaa aaaagttctt atgaagctca agttggctta
     5641 atgtgtgaag ctttttatga taaaaatctt gatttttctt ataagctttt tgtagaaaaa
     5701 gggcaggtta attttaaaaa tttaatccta ggggctttgc aagatgaaaa aactaaggcg
     5761 attacaggta tgtttaatgc cttggcaaat tttatcatag attttagcaa agattatgat
     5821 ttaaaagtgc ttttaagcgg aggggttttt caaaacaaaa ccttgcttga aattttaaaa
     5881 gctaaaaatt ttgatttttt tataccttta aagtaccctt gtaatgatag ctccatagcc
     5941 ttaggacaaa tggtgcattt tttaaattta gaaaaataaa gcaaatattc taaaaactca
     6001 taatttttta atgcttttaa ggttaaaatg aaacaaaaaa tatataagga aagaaaatgt
     6061 gtaaagattg cggctgctct ataaattcaa gccatacgca tggtcatcat cacgaccacc
     6121 atcatgaaaa tccaagctta aaagagggta aaaccataga agtgatttct aaaattttaa
     6181 gcaaaaatga tgaagaagct aagcacaata gagcgcattt taatgaagct aacacgcttt
     6241 gtatcaattt aatgagttct ccaggtagtg gaaaaaccac gcttttagaa agcacgatta
     6301 aggctttgaa aaatgaactt aaaattgctg tgattgaagg ggatttagaa accaataatg
     6361 atgctctaag ggtaaaaaat gccggagctt tggcgtatca aatcactaca ggacaaagct
     6421 gtcatttgga cgcttttatg gtgcatgagg ctttgcatca tttagccatt gatgatgtgg
     6481 atttgctttt tatagaaaat gttggaaatt tggtttgtcc tgcaagttat gatttaggag
     6541 agcatttaaa tgtggttttg ctttcgataa ctgaaggaag tgataaaccg caaaaatatc
     6601 ctgtgatgtt taaaaaggct gatatagttt taatcacaaa ggcagattta gctcatcatt
     6661 ttgatttcga tattaaagag gcgactaggt tgattaaaga attaaatcct agagcagata
     6721 ttatcaccct tgatgcaaaa aatggcacca atatggagct ttggtataag gtgcttaaac
     6781 ttaaaaagga gcttttttaa tgtgtttgtc tataccttct gaaattttag aaatcgatga
     6841 gttaaacaat gctttagtac aaactttagg cgtgaaaaga aaagttaatt tggatttgat
     6901 tgatgaacct ttaaaacaag gcgattatgt attaatccat gtaggcgttg ctatggaaaa
     6961 aatcgacaaa gaagctgcac tagaaagcat taaaacctat caagaaatag tagaaaaaat
     7021 gaatagtgga gagataaaaa gtgatgaagg agatttgggt ttaaatgaat ttcatcgatg
     7081 aatttagaga taaagaaagc attttagctt taaaaaaact catagaacaa gaacttaaaa
     7141 atcctattaa tatcatggaa atttgcggtg ggcatacgca tagtatcatg aaatatgctt
     7201 tgccttctat tttgccaaag gaaattaact ttatccatgg gccaggatgt cctgtttgtg
     7261 ttatgccaag agttcgcatt gatacagcta tcaagttagc ctccatgaaa gatacgattt
     7321 tttgtacttt aggggatctt ttaagggtgc ctggaagtga aatttcttta ctggatttaa
     7381 gagctaaagg ggctgatgtt agagcgcttt attctccgct tgaggttttg gaaattgcta
     7441 agcaaaattt aaacaaaaat atcatctttt ttgctatagg ttttgaaact actacgccta
     7501 tgagtgcttt acttcttcaa aaggttatag aagaaaaaat aaataatgtc ttttttcata
     7561 tcaatcatat cacagttcca gcacctgtag aagcgatcat gaatgatgaa aatgtaaaaa
     7621 tcaatgcttt tttaggtcct tctcatgtga gtgtgataac aggttatggt atttatgagc
     7681 ctttagcagc aaaatttaaa acccctatag cggtgagtgg ttttgagcca gttgatattt
     7741 tagaaagtgt gttaaatatc ataaaacaaa gcaatgaagg cacttttaaa gtgtataatc
     7801 aatacaaaag agccgtaagc aaagaaggca atgttaaagc acaaaattta gtaaaaaaat
     7861 actttagggt gtgtgatttt gaattccgtg gcttaggact tattaaagat ggaggcttgg
     7921 agttaaaaga agaatttagc gcttacgatg cgagtaaaaa atttgattgt acggttcaaa
     7981 gtaaaaatga aagcaaagcc tgtatttgtg ggcaaatttt aagaggtttg gccaagcctt
     8041 atgattgtaa agtttttggc aaggcttgta cgccaagaag tcctatagga agttgtatgg
     8101 tttctggcga gggtgcttgt gcggcgtatt ataaatactc aaaggtgaat gcatgaaaaa
     8161 tatttcctta gcccacggag gcggtggaga agagatgaat gagcttttaa ctaagctttt
     8221 taagatcttt gataatgaaa ttttaaacgc aaataatgat gcagcgattt tgggaaattt
     8281 ggctttaagc acggattctt ttgttttaag tccgattttt ttagatgaag aggttaatat
     8341 aggtaaactt tgtgtttgtg gttctattaa tgatgttttg atggtgggtg ctaagccaaa
     8401 atatctaagc ttagggctta tcttagaaga aggttttgag ctagaaaaat tagaacgtat
     8461 tttaaaaagc attaaagaag aatgtgaaaa atgtggagtt atgttagttt gtggcgatac
     8521 taaagttgtt cctaagggta aagcagatga aatttatatc aacactacag ccttaggtga
     8581 aattatttct aaaaaagaaa gtaaaaatat caaagcaggg cttagcatac ttctttcagg
     8641 tgatatagga aggcatggag ctagtgtttt aatcaaaaga aatgagttag aagctaatgt
     8701 taaaagtgat tgtaaggctt tagataaaga ggttttagag cttttagaaa aagatataaa
     8761 ggttgtagca atgagagatg ctactcgtgg gggacttagt gcggttttaa atgagtgggc
     8821 aaagcaaagt ggaaatgatc ttttgatctt tgaagaaaaa atcatcgttc aagatgaggt
     8881 tttaggactt tgcgagcttt ttggttatga agcctatgag cttgcaaatg aaggcacttt
     8941 tatactttgt gtggaaaaag aagatgggtt aaaagccttg gaaattctaa aaaaatacaa
     9001 tgtaaatgcg agtattatag gagaagtttt agaagagaaa aaagcacgcg tgatcttaca
     9061 aaacgcttat ggagcaaaac gctttttaga aagtcctaaa ggcgaacttt taccaagaat
     9121 ttgctaatgc acgaattaag tatagtagaa tctttaatcg aactttgcga agaaaatgcc
     9181 ttaaacaata aggcttgtaa tgtgcaagaa atttatgtaa aaatcgggcg tttaagtggt
     9241 atagaagtgg atctttttaa gcgttgtttt gaaactttta aagaaaactc aaatatttgc
     9301 aaaaatgcta aactttttat agagcttgct ccgcttgaaa ttttatgctt aaaatgcgat
     9361 caaacaagta ttttagaaga aaatgttttt aagtgtccta aatgtcaaag tatagaatat
     9421 aaaatcatac aaggtgagga cttacatctt atgcgacttg tgatgaaata atatatttgg
     9481 cgtttttg
//
LOCUS       DARGEM010000065         9456 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.065, whole genome shotgun sequence.
ACCESSION   DARGEM010000065 DARGEM010000000
VERSION     DARGEM010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.065"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..2327
                     /locus_tag="SFZ78_001146"
     CDS             <1..2327
                     /locus_tag="SFZ78_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG8212016.1"
                     /translation="YKQAQMIEYKGKFFCCKGCKSVWEILHESGLDEFYEKLGNQTLS
                     PVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTKQEGILELDINH
                     LNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKREFYSKLVVAIA
                     CVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHFYKSAFKTLKMH
                     SLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKYLEMFSKKRALD
                     TIDGLNDFLQNEVLVFNGKEFAPKEVQKVCLGDRILLKTGDKILIDGICKSGEMSVDT
                     SSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQLLELASSKKAK
                     LESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLIIACPCALALAT
                     PVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELELKEVFLDKALD
                     LNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLSAELNEGLLLGG
                     SSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIAYLKKEKKELMI
                     LSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVGDGVNDALALKY
                     ASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQNLAFSLFYNACT
                     IPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            2324..2530
                     /gene="ccoS"
                     /locus_tag="SFZ78_001147"
     CDS             2324..2530
                     /gene="ccoS"
                     /locus_tag="SFZ78_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG8212017.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(2553..2855)
                     /locus_tag="SFZ78_001148"
     CDS             complement(2553..2855)
                     /locus_tag="SFZ78_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8212018.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            2979..3497
                     /gene="gmhB"
                     /locus_tag="SFZ78_001149"
     CDS             2979..3497
                     /gene="gmhB"
                     /locus_tag="SFZ78_001149"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG8212019.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLILVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            3498..4451
                     /gene="rfaD"
                     /locus_tag="SFZ78_001150"
     CDS             3498..4451
                     /gene="rfaD"
                     /locus_tag="SFZ78_001150"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG8212020.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKDKTASMVLQFGHQILAGKNPRLFERSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            4444..5829
                     /gene="rfaE1"
                     /locus_tag="SFZ78_001151"
     CDS             4444..5829
                     /gene="rfaE1"
                     /locus_tag="SFZ78_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG8212021.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKERKTPFKNR
                     IMAHNQQVLRLDEEDTSEILLENELIVLFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEVGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANGIEIF
                     KACEFANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDENTPLELISFLKPDILVKGADYKDKLVVGSNLVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            5826..6386
                     /gene="gmhA"
                     /locus_tag="SFZ78_001152"
     CDS             5826..6386
                     /gene="gmhA"
                     /locus_tag="SFZ78_001152"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8212022.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDYNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(6367..7326)
                     /gene="waaF"
                     /locus_tag="SFZ78_001153"
     CDS             complement(6367..7326)
                     /gene="waaF"
                     /locus_tag="SFZ78_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG8212023.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR"
     gene            7385..8203
                     /locus_tag="SFZ78_001154"
     CDS             7385..8203
                     /locus_tag="SFZ78_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8212024.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNIGVLHSSSDFIMFLDSDDFLTPGACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVLNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKNFEKVKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYKDKKKSNEIIKRLSKEFLLDEFHQKLFEVLEREEKSLCMRANKI"
     gene            complement(8206..9165)
                     /gene="yibB"
                     /locus_tag="SFZ78_001155"
     CDS             complement(8206..9165)
                     /gene="yibB"
                     /locus_tag="SFZ78_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YibB"
                     /protein_id="HEG8212025.1"
                     /translation="MIDNEITIVTAFYDIGRKDIKNFERDNDKYLSYFEFLAGIKNKM
                     IIYTQENIKEKILDTRKKHNLEDKTIIITKELQEFDEQGYKKIIDTFRNYDQSINRKN
                     PNNIECISPMYCYLMYLKPFFVCDAIQRGLTDKNIMWLDFGFNHGGNFFVDKDQFNFY
                     LQKQNSIDENKINLFSIKNDDKQTLANIYFSMETFLMGGIIFAKSKNWLLFKHHMQKC
                     IKYFTSFGIIDDDQIMLLWCARNYRKNYNIIKVYFWFDSLYHFIPQNIAKKLKINTNQ
                     IKHYKIIKEKLKEDFNNKNIKNTFINLIKYCYFKFINKNHKVL"
     gene            complement(9162..>9456)
                     /locus_tag="SFZ78_001156"
     CDS             complement(9162..>9456)
                     /locus_tag="SFZ78_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEG8212026.1"
                     /translation="MKIMQDILINYWKYENKLVYYFMFQILFDALKKKYLNLNLYITN
                     DTDIHLLQYHAKDKYSDKLWNDIKNKTSIHSLKIFKKIRKHSMIDKILFKDTI"
BASE COUNT         3274 a         1061 c         1702 g         3419 t
ORIGIN      
        1 attataaaca agcccaaatg atagagtata agggtaaatt tttttgttgt aaaggttgta
       61 agagcgtttg ggaaatttta catgaaagtg gattagatga gttttatgaa aagcttggaa
      121 atcaaacttt aagccctgta aattttcaaa atgaaatgaa aaattatgat gagtttatca
      181 ctaaaaccaa agaaggattt agtgaaattt atctcatgat acacggtata gaatgtgcag
      241 cttgtgtgtg gcttaatgag aaaattttaa ccaaacaaga aggaatttta gaacttgata
      301 ttaatcattt aaaccataaa gcacgcattg tttttgatga gcaaagcatt tctttggtgc
      361 aaattttaag acttattgaa agcataggct ataaagcgag tgcttatgat gcgagcaagg
      421 cttcaaaaaa agcggattta ctaaaaaggg aattttattc taagcttgtt gtggctatag
      481 cttgtgtgat gaatatcatg tggatagcag tggcaaaata cgcaggattt tttagcggta
      541 tggataagga cactaaggat attttaaatt ttgctgaatt tatcctttgt tctcctgtgc
      601 ttttttatac gggatctcat ttttataaaa gtgcttttaa aactttaaaa atgcatagtt
      661 taaatatgga tgtattggtg attagcggag cgagtttggc ttatgtttat tctttatggg
      721 ccatgttttt tagggtaggg gaagtgtatt ttgactctgt ggcgatgata atttgctttg
      781 tttttatagg taaatatctt gagatgttta gcaaaaagcg tgctttagat accatagatg
      841 ggcttaatga ttttttacaa aatgaagttt tagttttcaa tggtaaagaa tttgctccta
      901 aagaagttca aaaggtttgt ttaggggata gaattttgct taaaactgga gataaaattt
      961 taatcgatgg gatttgtaaa agtggtgaaa tgagtgtgga tacttcttct ttaaatggag
     1021 aaaatacccc aaaactcata caaaaagaag atgaaatttt ttcagcttgt atagtgcttg
     1081 atggaagtgt ggagtatgaa gcaacaaagc tttacaagga ttcaaaactc agtcaaatta
     1141 tccagctttt agaacttgca agttctaaaa aagcaaaact tgaaagtttg gtcaatagtc
     1201 ttttggctta tttttctaga acggttttat tgatcgcttt tatttgtttt gctttttggt
     1261 ttttttataa agaagagagt ttcgaaattt ctttagtcaa tgcgattgca gttttgatta
     1321 tcgcttgtcc ttgtgctttg gctttagcaa cgccagtgag caatcttgtg gctttaggta
     1381 gggctttaaa aaagcatatt ttatttaaaa gttctagcgt gatagaagat ttaagcaaat
     1441 gtgattgtgt ggtatttgat aaaacgggta ttttaaccaa aatagagctt gaacttaaag
     1501 aggttttttt agataaagcg cttgatttaa acgagcttta taattttgta aaactttcta
     1561 aacatcctat ctctcaaaat attgtgttat atttaaagca aaaaggagct aaggatttaa
     1621 atttggattt taaaaagcat tcgagtattc aagctaaagg tttaagtgct gagttaaatg
     1681 aagggttgct tttaggcgga agttctaaat ttttgcaaga aaagggtatt gtggctaaag
     1741 aatttgataa tacgcatttt atttttgcca aggaaggtaa aattttagct ttttttgagt
     1801 ttgatagtgt tttaagagaa ggtgcaaaag agcttatcgc ttatcttaaa aaagaaaaga
     1861 aagaattaat gatactcagt ggcgatcatc aaaaagcagt ggaaaaaatc gctaaaaagt
     1921 tagaaattca aaattatcaa gcttcttgtt tgcctgaaga taagatgaaa actatagaaa
     1981 atttaagtaa aaattacaaa gttttatttg taggtgatgg ggtaaatgat gcactagctt
     2041 taaaatacgc aagtgtttca atgactttaa gagaaggaag tgatctagct atagaaagta
     2101 gtgatgtttt gcttttgaaa aatgacttgc tttctttaaa aaaagccatc aaattatcta
     2161 aaaacacctt taaaattatc aagcaaaatc ttgctttttc tttgttttat aatgcttgca
     2221 ccataccttt ggcttttttg ggtatgataa atcctttatt tgctgctatt tctatgtctt
     2281 ttagtagtat aatagtcgtt ttaaatgctt taaggattaa agaatgaata gtataatcat
     2341 gatgatgata ggagtttcta tcttagcgtt ttttatcatt ttggcaactt tgctttgggg
     2401 gattaaaaat aagcaatttg atgatgatta taaatttact actttaaatg atgatgagga
     2461 ttctttgcgt gatgctatag aattagaaag gcgtaaaaaa gaagctttgg ataaaaaaag
     2521 gctttcttaa aaaggaaagc cttttttaga aattatttta aagtttcaat atgagcttca
     2581 atagctttaa aatcttcttc agttaaacct ttaaggttaa gtttcatgat cgcaccttga
     2641 ccataagcat ttcttttgcc ttctgaatat tctttcatgt attgaagtct ttcagcagaa
     2701 gaaagagttt ttaaagctgg aactttgttt aagtaaactt tgtcagcatt tgcaccatgg
     2761 catactgcac attttttaaa aagtgtagca ccatctgcag caaaagcaga aacaccaaga
     2821 catgccaaag cagaaactac taataatttt ttcatttgat ttctcctcag taaaaattag
     2881 attgccagat attatatatc tttattttta taaaaatctt aagaaaataa agataatgtt
     2941 tattttcttt tcaaaaaagc tatattataa tgttttttat gaaaacaaaa gcattatttt
     3001 tagatagaga cggtgtgatt aatatagata aaaaatatgt ctataaaata gaagattttg
     3061 aattttgtga tggaattttt gaactttgta gatatttttt agctaaaaaa tatttgcttt
     3121 ttatagcgac aaatcaatca ggcattgcaa gaggatatta taaggaaagt gattttttta
     3181 agctttgtga ttatatgctt aaagaattta ctaaacaagg tataaaaatt gataaaattt
     3241 atcattgtcc gcatttagaa ggttgtgaat gtcgcaaacc taaagcagga atgcttttaa
     3301 aagcaaaaga tgagtttaat ttagatatga aaaattctat ttttatcgga gataatctaa
     3361 gcgatatgca agcagggtta aatgctaata ttggcacttt gattttggta aatgaagaaa
     3421 aaaaagaagg cgattttttt agacaattta aaaatttaaa agaaattttg agttttttta
     3481 aagaaaagga catttaaatg agagtagcaa tcacaggtgg tgcaggattt ataggttcgc
     3541 aactggcttt aaatttgcaa gaaaaacatg aaattttaat cattgataaa atgcgtagca
     3601 gtgcgacttt tgaaaatgga aatttacaaa gttttggaca ttttaaaaat ttacttgaat
     3661 ttgatggaga actttttgca ggcgatatta acgatgaaaa agttttaaaa aagattgaag
     3721 attttaagcc agagattatt tttcatcaag cagcaatttc agacactacg gtttttgatc
     3781 aaactaaggt tttgcaaacc aatttaaata cttttaaaga ttttatagaa cttagcatag
     3841 atcttaatgc aaagcttatt tatgcaagtt cagcttcggt ttatggtgat gcaaaaagtc
     3901 cacaaactgt aggtaaggat gaagaaccaa aaaatcctta tgctttttca aaattgatga
     3961 tggataagtt agcgaaaaaa tattacgata aagctcattt ggtaggactt agatatttta
     4021 atgtttatgg aaaaggcgaa ttttataaag acaaaaccgc ttctatggtt ttacaatttg
     4081 gccatcaaat tttagcagga aaaaatccac gcttgtttga aagaagtgat caaatttata
     4141 gagattttac ttatattaaa gatgttatta atgccaattt aatcgccctt gattcaaaat
     4201 gcggggttta taatgtaggc agtggtaaag caagaacctt tcaagatata gtcgatattt
     4261 tgcaaaaaga gttaaagact gatttgcctt gtgaatatat cccaaatcct tatgtaaaat
     4321 cttatcaatt ccatactgaa gcaaaactag atcaaacttg ggattatcaa ccaaaattta
     4381 gtcttgaaga ggggattaaa gattatttag atgagataaa aagacttttt gaaaaggaag
     4441 taaatgcttg agtttttaag ccagcaaaaa cctaaaattt tgattatagg ggattttatg
     4501 gtggataatt atacttggtg tgattgttcg cgtatcagtc ctgaagcccc tgttttggta
     4561 gctaaaactc ttaaggaaga taaaagatta ggcggggctg cgaatgttta tgcaaattta
     4621 aaaagtttag gggctgatgt ttttgcgctt ggtgttgtgg gtgatgatga gagtgggaaa
     4681 tttttacaag aaaatttaaa aggagaattt ttgatccaaa aagaacgcaa aacccctttt
     4741 aaaaatcgca ttatggcaca caatcagcag gttttaagac tagatgaaga agatacaagt
     4801 gagattttgc ttgaaaatga acttatagtt ttatttgatg aaaagattaa agattttaaa
     4861 gctgtggttt taagcgatta tgctaagggt attttaacgc ctaaggtttg caaggctgtg
     4921 ataaaaaagg ctaaggcttt aaatattcct gttttagttg atcctaaagg cagtgatttt
     4981 agtaaatata gcggtgcaac cttactcacg cctaataaaa aagaagcttt agaagctttg
     5041 aaatttgaaa atttagaggg tgaaaattta gaaaaaggga ttaaaaaatt aaaagaagat
     5101 ttttctttgc gttattctat catcactctt tcagaagtgg ggattgcgct ttttgatgag
     5161 ggtttaaaaa tcgcacctgc taaagcctta gaagtttatg atgtaacagg agcgggtgat
     5221 agtgtgattg ccgttttggc tttttgtttg gcaaatggga ttgaaatttt taaagcttgt
     5281 gaatttgcca atgaagctgc agccgttgtg gtaagtaaaa taggtagtgt gagtgtgagt
     5341 tttgatgaga ttagaagttt taaaagtatg agttttgaga aaaagatcaa aaataaagaa
     5401 gagcttttaa cgcttttaaa acaaaatgat aaaaagattg tttttacaaa tggttgtttt
     5461 gatatcgtgc attttggaca tataaaatat cttgagaaag ctaaaagatt aggcgatgtt
     5521 ttgattgtgg gcttaaactc agatgcgagt gtgaaaagac tcaaaggcga gagtcgtcct
     5581 gtaaattcag agtttcaaag agcttgtatg ttggcagctt tttattttgt agattttgta
     5641 gtgatttttg atgaaaacac acctttagaa cttataagct ttttaaagcc tgatattttg
     5701 gttaaaggag ctgattataa agataaactt gttgtaggtt caaatttggt ttcaagagtt
     5761 gaattaatcg attttgaaga aggatttagt acgagcaaga ttatagaaaa gattaaggat
     5821 aaaaaatgat aaatttagta gaaaaagaat ggcaagaaca tcaaaaaatc gttcaagaaa
     5881 gtgaaatttt aaaaggacaa atcgctaaag taggtgagct tttatgtgaa tgtcttaaaa
     5941 aaggtggtaa aattttaatt tgcggaaatg gtggaagtgc agctgatgca cagcattttg
     6001 cagctgaact tagtgggcgt tataaaaaag aacgcaaagc tttagcaggc atagcgctta
     6061 caacagatac ttcagcgctt agtgctatag gaaatgacta tggttttgag tttgtttttt
     6121 caagacaagt agaagcttta ggaaatgaaa atgatgtttt aatcggtatt tcaacgagcg
     6181 gaaaaagccc taatgtttta gaagctttaa aaaaagcaaa agagcttaat atgctttgtt
     6241 tagggcttag cggaaagggt ggtggaatga tgaataagct ttgtgattat aatcttgttg
     6301 tgccaagtga tgatacggct agaattcaag aaatgcacat tttaatcata cacacacttt
     6361 gtcagatcat cgatgagagt ttttaagtaa atttctagcc tcttctataa ccctttgagg
     6421 ctttagatct ttcatgcatt tgtggtgttt taaagggcag gttttttgca tacaaggcat
     6481 acaagctaga tctaaatgca ctaatattgc gttttcattt tgccaaggtg aagtttgagt
     6541 aaatttcgta gggccaaaaa tagctacggt ttttacctta taaaccgcac ttatgtgcat
     6601 aggaccactg tcatttgtga tgaaaagatc gcaaaaagcg atattttgac aaagggtttt
     6661 gatggtggtt ttgttgcaaa gattttttac ttttatgttt tgttctttta aaatttgata
     6721 aatttcatta caaagttctt gttcggattt tcctgcgcca aagattaaaa tttcatgact
     6781 ttggctgaaa tttaaagcca ctttagcaaa ataactcgca tcccatcttt ttgcacttcc
     6841 aaagcttgcg ccaggattga gtcctagaat ttttttacca ttttttaaga caagagggtc
     6901 ttgaagtttt agcttaaagg gaagctttaa gtctttagaa tgagctttta tactaagtga
     6961 gttttctata aaataaaggt attttaaaac ttgatgttct tctttgtgct tgtttttgtc
     7021 aaaaaaatat ctttgttttg ttttaaggat atgcaagata atcttagaag aaaacgcaga
     7081 tctaaaagca aagctaagat cgatcttacc aagttctttg cgtaaagata gggcttgttt
     7141 atagcgagat tgtttatttt ctatgatgat tttagaatta ggaaattctt taaaaagtgc
     7201 tgtggaaacc aaagagccat aaaggataaa ttgggcattt ttaaaatgtt cttttatagc
     7261 gtataaagca ggtgaagcca tcactgcatc gcccagccaa gtgggaagat gtataaaaat
     7321 tttcataaat ttcctaaact ttgatagaat tgtttttatt attttaacaa aatttaggaa
     7381 aaatatgcca caactttcga tcataatccc gctttttaat tcttgtgatt ttatttcaag
     7441 ggctttacaa agttgtataa atcagacttt aaaagatatt gaaattttga ttatcgatga
     7501 taaaagtaaa gataatagtt taaatatagt tttagaattt gctaaaaaag atccaagaat
     7561 aaaaatcttt caaaatgaag aaaatttagg cacttttgca agtagaaata taggagtttt
     7621 gcattctagt tctgatttta taatgttttt agatagtgat gattttttga cacctggtgc
     7681 ttgtgaaata gcgtttaaag agatgaaaaa aggttttgat ttgctttgtt ttgatgcctt
     7741 tgtacatagg gtaaaaacca aacaatttta tcgttttaaa caagatgaag ttttgaatca
     7801 aaaggaattt ttagaattct taagcaaaca aaggcatttt tgctggtcgg tttgggcgaa
     7861 gtgttttaga aaagatatca tcttaaaaaa ttttgaaaag gttaaaatcg atgagcgttt
     7921 gagttacggt gaagatgtgc ttttttgtta tgtttatttt atgttttgtg agaaaatagc
     7981 cgtttttaaa acttgtattt atcattatga atttaatcca aatggaagat atgagaataa
     8041 aaataaagaa attttaaatc aaaattataa agataaaaag aaaagtaatg aaatcataaa
     8101 aagactatcc aaagagtttt tacttgatga atttcatcag aaattatttg aagttttgga
     8161 gagagaggaa aagagtttat gtatgagagc aaataagatt tagctttata atactttatg
     8221 atttttattt ataaatttaa aatagcaata tttaattaaa tttataaatg tattttttat
     8281 atttttatta ttaaaatctt cttttaattt ttctttgatt attttataat gcttaatttg
     8341 atttgtattt atttttaatt tttttgcaat attttgtggt ataaaatgat ataaagaatc
     8401 aaaccaaaaa taaactttta taatgttata attttttcga taatttctag cacaccataa
     8461 aagcattatt tgatcgtcat caattattcc aaatgaggta aaatatttta tacatttttg
     8521 catatgatgt ttaaataaga gccaattttt tgattttgcg aatataatac cacccattaa
     8581 aaatgtttcc atggaaaagt aaatgtttgc taaagtttgt ttatcatcat tttttattga
     8641 aaagagatta attttatttt catctatact attttgtttt tgtagataaa agttaaattg
     8701 atctttatct acgaaaaaat ttcctccatg attaaaacca aaatcaagcc acattatatt
     8761 cttatcagtc aaacctcttt gtatagcatc acatacaaaa aaaggtttta aatacataag
     8821 gtagcaatac ataggagaaa tacattctat attgtttgga ttttttctat ttatactttg
     8881 atcatagttt ctaaaagtat ctattatttt tttataacct tgctcatcaa attcttgtaa
     8941 ttctttggtt attattatgg ttttgtcttc taaattatgt ttttttcttg tatctaaaat
     9001 tttttccttt atattttctt gggtgtatat aatcatttta tttttgatac ctgctaaaaa
     9061 ttcaaaataa gataaatatt tatcattatc tctttcaaaa tttttaatat cttttctacc
     9121 tatatcataa aaagctgtta ctatcgtaat ttcattatcg atcatattgt atccttaaat
     9181 aatattttat ctatcatgga atgttttcta atttttttaa aaatttttaa tgaatgtatg
     9241 cttgttttat tttttatatc attccataat ttatcactat atttatcttt tgcatgatat
     9301 tgcaagagat gaatatctgt atcatttgtt atgtataaat ttaaatttaa atactttttc
     9361 tttaaggcgt caaacaatat ttgaaacata aaataatata ctaatttatt ctcatatttc
     9421 caataattaa tcaatatatc ttgcattatc ttcata
//
LOCUS       DARGEM010000066         9258 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.066, whole genome shotgun sequence.
ACCESSION   DARGEM010000066 DARGEM010000000
VERSION     DARGEM010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9258
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.066"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            134..2225
                     /gene="cfrA"
                     /locus_tag="SFZ78_001157"
                     /pseudo
     CDS             134..2225
                     /gene="cfrA"
                     /locus_tag="SFZ78_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
     gene            2525..3319
                     /locus_tag="SFZ78_001158"
     CDS             2525..3319
                     /locus_tag="SFZ78_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG8212027.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3316..3846
                     /gene="grpE"
                     /locus_tag="SFZ78_001159"
     CDS             3316..3846
                     /gene="grpE"
                     /locus_tag="SFZ78_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG8212028.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            3868..5739
                     /gene="dnaK"
                     /locus_tag="SFZ78_001160"
     CDS             3868..5739
                     /gene="dnaK"
                     /locus_tag="SFZ78_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG8212029.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIEGKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            5872..7782
                     /locus_tag="SFZ78_001161"
     CDS             5872..7782
                     /locus_tag="SFZ78_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8212030.1"
                     /translation="MEQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRVD
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGENPERIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLG
                     SKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFA
                     KLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQGYYDTEVKPYVANSWIAWESASVGYEILFSKYFYTYTPPRKLEEINNELEKLE
                     KEVQDLLREIVQ"
     gene            7779..9056
                     /locus_tag="SFZ78_001162"
     CDS             7779..9056
                     /locus_tag="SFZ78_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8212031.1"
                     /translation="MKNFKESGIEWLGEIPEHWEVVKINKIVTFVNGYAFENFDFNPI
                     FEIPVIRIGDMQKEKILYDNCLKTKEKEKLKQFLISNNDILIALSGATTGKIAFCDTD
                     NKAYINQRVAIVRSKLKLVKYYFLTRGFSLLIELACNGSAQPNISTKEIGEFKIPLPP
                     LKEQEQIANFLDEKCKKIANFIEKKEKLITLLKEQKQALINETITKGLDKNINFKDSG
                     IEWLGEIPQHWRIVKLKYVAFTNIGLVYTPDDIIENPDEGYPVLRANNIQNGKIDYQD
                     LIYIKSKQIGKKQIISSGDLLMCVRNGSENLLGKTAKIQDGYFSFGAFTAIIKSQFND
                     YFYWIFQTNMLRKSIASFSASNGIGQISQDDIKNFIISFPPLKEQEQIAQFLDSEISK
                     IDKIIEKTKKQIKLIKEYKTTLINQAVCGRIDL"
     gene            9067..>9258
                     /locus_tag="SFZ78_001163"
     CDS             9067..>9258
                     /locus_tag="SFZ78_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212032.1"
                     /translation="MEENNLEYIKQNFQIHYYFDDNSHSMNAFVRNAMEKDFLNFINE
                     IGNILDIKIKLESQAREEGG"
BASE COUNT         3582 a         1220 c         1698 g         2758 t
ORIGIN      
        1 taagaattat agcaagaaaa aataaatttt taattaatac taattatcac aattgataca
       61 aaatttatct taaattaata attattatca taatattttg atttctaaat caatatttaa
      121 caaaaggaga aaaatgaaaa aaatatgtct attagtttgc gccattggtc tcttaagctc
      181 caatgccata tcgcaaaatg tagaactaga tagctcaatc gttagtgctt ctggctttac
      241 tcaagatatt aaagaagctc ctgctactat caatgttatc agtaaaaaag aattacaaag
      301 taagccttat agagatgttg cagaggctat cgcagatatc ccaggcgttg atttatatgc
      361 tagcaaggga aaaacaggtt cttataatat taccatgaga ggtattacgg gatatacttt
      421 ggttttgatt gatggacgcc gtcagggtat tggcggggaa gttggtccta atggctttaa
      481 tgaaatttca aattctttat tacctccaat ttctagcata gaaagaatag aagttataaa
      541 aggtcctatg agtactttat atggctctga agctttaggc ggggtggtaa atattattac
      601 caaaaaagta agtgataaat gggaaacttc tgtaagtttg gatgctcttt taaatgaaaa
      661 taaagattgg ggcaatactt atggaacaag tatttattct agtggtcctt tgatgaatga
      721 taaattaggt ctaacgcttc gttttagaga attttataga cagcaatcta atgttgaatt
      781 tacaaatgga agcgggcaaa gagttcaagg ggatcaagct caaagtccta caaaggcaaa
      841 taattttaac ataggaacaa gaattagtta tttagctaat gattataata cttttatatt
      901 tgatatagat ttttcaagaa atcattacga caataaacaa ggtcaattag gaactattac
      961 aagtccaggt agaacaccag gtagtttaac gggtggctat gcggatatta tggaagttga
     1021 taaatttgtg acttacttaa gtcatgaggg tatttatgaa aatttttcta ttacctcgac
     1081 tttgcaatac aatagagtaa gcaataatgg tcgcgaagtt gtaggacaag caacgcagcc
     1141 atttttggga gaaaatagag atatagtcgc agaagatatt atcttagata ctaagtctgt
     1201 cattcctttg ggacaaagtc atattttgag cgcaggtggt gaatataggc ttgaaaaaat
     1261 gcaagataaa atagctaatc cgaccaattt tgatcagtat ttattggcaa tatttgcaga
     1321 ggatgagtac agcataaaag ataacttaag attgactttt ggagcaagat acaatcatca
     1381 tgaaattttt ggaaataata tttcgccaag agcttatctg gtttataatc ctactgatga
     1441 acttacttta aaaggcggtg tatctacggg ttttaggact ccttatgcaa atcgtttgat
     1501 aaatggagct tataattata gtggtcaagg tagattccct atatatggaa atcctgattt
     1561 aaaagaagag acatctttaa attatgaaat agcagctatt tacaataatg atttgtttta
     1621 tgtttctgcg acaggttttt taacaaattt taaagataaa atttcaaccc aaagatataa
     1681 taaagacgat atgattccag gaattggtac ttgcgatgct gatagatgtt ttaaggcaat
     1741 caaccatggc aaggttgaat ataaaggtat agagcttgga gcagggataa gccctcttga
     1801 taatttaaat gtaaattttg ctttatactt atcttgatac tgaagttaaa gaagcacaag
     1861 atagaagtgt gataggtaaa cctgaacaag atagtttaaa acacaatatc atgttaaaaa
     1921 ccgaatacag cttctataat aaattcactc cttggataaa aggcgagtgg caaatagatc
     1981 gctatatggg tgatactaat atcaatagag aatattacaa ggatatcttt ttagcttcca
     2041 tgggtgtgcg ttatgatatc aacaaacaat ggagtatcaa tgcagctatt tataatcttt
     2101 ttgacaaaag ctttacaaat ggctgggaat cttatgcaag tgggagtggt agcacttggg
     2161 taaataccta taaccgcata gaagaaggaa gaagaatgta tatttctatc aatggtaact
     2221 tttaagcttt gatagaagaa ccaaagagct ttcaaaggct tctttggttt tttattttaa
     2281 tatcttatac ctttaaaaaa ctagacaatc aattcaattt aaaattttca tcttattttt
     2341 atcattgcat tttcaatctt aaaagatagc ttatccttat aaaaaagtaa ctaataaaac
     2401 tttagtcata ttgactaaat aaaattaagt atattttttt atatttatac ttgacaaaat
     2461 aacactcaat gttgtataat atatctagca atcaaaaaat agagtgctag atatgaagga
     2521 aaatatgatg aaaagccgag ataaaaagga tttgatttta gagtctatta tccaaactta
     2581 tcttttggat aatgcaccta ttggttctaa tgagttaaat tcaaaccttt gcatacctgc
     2641 ttcgactata cgcgtttatc ttaaaagact tagcgatgag ggtttgatca ctcagcttca
     2701 tataagtagt ggtagaattc ctactatttt aacgatgcaa aattattggc aaagtttttg
     2761 ggaaaaagaa caagataaaa atatccatat caaaaacgaa agctttttga aagagttaag
     2821 taaagaattt gaaatttatt gtcttgttta tggaggtaga agtttagtac ttaaagaagt
     2881 actagatctt aatactaaat ttatagtgct tgattttgaa gatgaagagc tggttttaaa
     2941 atacgaaaaa gaagcgtgga attttttaca aagtcttata gggcttgatc tttctagtat
     3001 agaaaaaata gctttgagag ttcattttat agatcttgta gaaaaaatag ctagcttaag
     3061 acaaaatttg atttgctata gaagcaatga agaaagagct tatcaaattt atcaaaatga
     3121 tgaatttgtt aagctcttag attgtcaaat tcaccgtcat tttaaagaaa gtcttgaatt
     3181 tgaaccttta tttaaagaag gttttatggg gcttaaggtg gatgcgcagt ttttgggcga
     3241 agatgtaaat attatcttag caggtagtgt ttatacggat tataaaaaaa tattacaata
     3301 tataaaggag gcggcgtgag cgagcaaaag caagaatttg aaaacgaaaa cgcagaaaat
     3361 tctgaacatt tgcaagatga gaatttgcaa aatatcgaag atgttgagca aaacaaattg
     3421 caaaaagact atgatgaatt aaaagacaaa tatatgcgtg caaacgctga atttgaaaat
     3481 attaaaaaaa gaatggaaaa agaaaagcta agtgctatgg cttatgcaaa tgaaagcttt
     3541 gcaaaggatt tgcttgatgt tttagatgct ttagaagcag ctgttaatgt cgaatgccaa
     3601 gatgaaatta gcttaaaaat caaagaagga gtgcaaaata ctttagattt atttcttaag
     3661 aaacttgaaa aacatggagt ggctcttatc aaagatgaaa aagagtttga tcctaattta
     3721 cacgaagcaa tgtttcatgt agatagtgaa aaccatcaaa gtggtgaagt ggttaccgtg
     3781 cttcaaaaag gttataaaat agccgatcgc gtgatccgcc caaccaaagt tagtgtagca
     3841 aaataaattt taataaaagg ataaaaaatg agtaaagtta taggtataga tttaggaaca
     3901 accaattctt gtgttgctgt gtatgaacgc ggcgagagca aagtaatccc aaacaaagaa
     3961 ggaaaaaaca caactccttc agtggtagct tttacagata aaggcgaagt tttagtaggc
     4021 gatagtgcaa aacgccaagc ggtaaccaac cctgaaaaaa ccatttattc tatcaaaaga
     4081 attatgggtt taatgatcaa tgaagatgcg gctaaagaag ctaaaaatag acttccttac
     4141 cacatcactg aaagaaatgg tgcttgtgct attgaaattg cagggaaaat ttatactccg
     4201 caagaaattt cagcgaaagt tttaatgaaa ctaaaagaag atgctgaagc ttttttgggc
     4261 gagagtgttg tagatgcggt tattactgtg cctgcgtatt ttaacgatgc acaaagaaaa
     4321 gcaacaaaag aagcaggaac tatcgcagga cttaatgtat taagaattat caatgagcct
     4381 acttcagcag ctctagctta cggacttgat aaaaaagata gtgaaaaaat tgtggtttat
     4441 gatctaggtg ggggaacttt tgatgttacc gtacttgaaa cgggcgataa tgtagtagaa
     4501 gttttagcaa caggtggtaa cgctttctta ggtggtgatg attttgataa taaacttatc
     4561 gattttctag caagtgaatt taaagatgaa acaggcatag atcttaaaaa tgatgttatg
     4621 gctttgcaac gcttgaaaga agcagcagaa aatgctaaaa aagaattaag ctcagctaat
     4681 gaaactgaaa ttaatttacc atttatcaca gctgatgcga gtggcccaaa acacttggtt
     4741 aaaaaactta ctagagctaa atttgaaggt atgattgatt ctttagtggc tgaaaccatc
     4801 actaaaatca atgaagtagt aagcgatgca gggcttaaaa aagatgagat caaagaaatc
     4861 gttatggtag ggggctctac tcgtgttcct ttagtgcaag aagaagtgaa aaaagccttt
     4921 aataaagatc ttaataagtc tgtaaatcct gatgaagttg tggctatcgg tgcggcgatt
     4981 caaggtgcgg ttataaaagg tgatgtaaaa gatgtgcttt tacttgatgt tacaccgctc
     5041 tctttgggta tagaaactct aggcggggta atgactaaga ttatcgaaaa aggtacaact
     5101 attccaacta aaaaagagca agttttctca accgctgaag ataatcaaag tgctgtaact
     5161 atcaatgttt tacaagggga aagagaattt agtcgtgata ataaatcttt aggaaatttt
     5221 aatcttgaag gaattccacc agcaccacgc ggtatgccac aaatcgaagt tacttttgat
     5281 atcgatgcaa atggtatttt aactgttagt gcaaaagata aagcaacagg taaggctcaa
     5341 gagatcaaaa tcacaggttc gagcggactt agcgaagaag aaattaacaa catggtaaaa
     5401 gatgctgaac ttcacaaaga agaagataaa aaacgcaaag aagctgtaga tgctagaaat
     5461 gcagctgata gcttggctca tcaagtagaa aaatctttaa gtgagttggg tgaaaaagtt
     5521 gccgctgctg ataaagaaaa tatccaaaag gctcttgatg atttgcgtga gaccttgaaa
     5581 aatcaaaatg caagcaaaga agagattgaa ggtaaaatga aagctttaag tgaagtttct
     5641 cataagttag ctgaaaatat gtataaaaaa gatgagccaa acacagcaaa tgataaaaag
     5701 aaaaaagatg acgatgtaat cgacgctgaa gttgagtaat cttctaaaat cttcattcaa
     5761 gccttgttaa aaggcttgaa ctcaattcta ttttatctta tttaattttt aaaaattttt
     5821 tagtagtgat tttatataat atattattaa taaaaatata aggaacacat tatggaacaa
     5881 agccaattcc agcccattgt caactttata tggagtgtgg cagatgattt gcttcgtgat
     5941 gtttatgtaa agggcaaata ccgcgatgtt atcttaccca tgacaatcat aagaagagtt
     6001 gatgcggttt tagagcctac aaaagataaa gttcttaaaa cctacaatac ctataaagat
     6061 gaatttgaaa atttagaatc tttgctaggt ggaaaacaag ggaataaact aggctttttt
     6121 aattattctc gatttaatct acaaaccctt ctaaacgatc caaaaaacat aagaataaat
     6181 tttgaaaatt atcttgattg ttttagtgaa aatatcaaag atatcatttt aaaatttaaa
     6241 ttcaaaaacc aactcgatac cctagaagaa tccaatatac tttttggtgt tatagaaaga
     6301 ttttgctcgc ctaaggtaaa tttcggtata gaagatattt tagatgaaaa aggtaatgtt
     6361 atccataaag gcttgagtaa tcttggcatg gggtatgttt ttgaagagct tatccgtaaa
     6421 tttaacgaag aaaataatga agaagccgga gagcacttta ccccaagaga gattatagag
     6481 cttatgactc atcttgtatt tttgcctgta aaagagcaga tcaaacaagg aacatggctt
     6541 atttatgata atgcttgtgg aagtggtggt atgctaacag aatcaaaaga attcatcaca
     6601 gatcctgaag gacttataca gtcaaaggca aatatttatc tttacggaca agaaatcaac
     6661 cctgaaactt atgctatatg caaagcagat atgctgataa aaggcgaaaa tccagagcgc
     6721 ataaaatttg gttctacctt aagcaatgat caacaaaact tacaatttga tttcatgctt
     6781 agcaatccac cttatggtaa gtcttgggaa aatgatcaaa aaattctagg cgtggaaaag
     6841 aaaggttcaa attcaacttg taatgatcca agatttagtg taggcattac aagcaaaagc
     6901 gatggacaaa tgatgttttt gcttaatatg cttagcaaga tgaaatttga cacccctttg
     6961 ggttctcgta tcgcaagcgt gcataatgga agctcacttt ttaactcaga tagcggtatg
     7021 gtagctataa gaaagcatat catagaaaac gactatcttg aagctatagt cgccctacct
     7081 actaatatgt tttataatac aggaattccc acttttatat ggatcatcac caacaaaaag
     7141 tcagaacaca aaaaaggcaa agtccagctt ataaacacta caaatgaaga atatttttca
     7201 aaaatgaaaa agtctttagg ctctaaacaa aatgaaatga ctaaagaaca tatagaaaaa
     7261 atcactaaat tatttttaga aaatgcaagt aataaagatt gcaagatttt ggataatgaa
     7321 gactttggct atactaaaat catcatagaa aaaccaaaaa gcatagaagc tttaaaagat
     7381 gatgaaaaat ttgcaaaact aaaagacaaa gataaaatct tagaaaaatt acaagaatta
     7441 gaacaaaatc cacaagactt taaaaacaga gaagaattta tcaaattttt aggcgtaaag
     7501 ctcaaaaaaa gcgaagaaaa tctcatcatt gatagcgata aaactaacaa tactgaaaaa
     7561 attccactca aaacaaatat acaaggctat tatgacacag aagtaaagcc ttatgtagca
     7621 aactcttgga tagcgtggga gagtgcaagt gtgggctatg aaatactttt tagcaaatat
     7681 ttttatacct acacaccacc aagaaagcta gaagagataa ataacgaatt agaaaagcta
     7741 gaaaaagaag tgcaagatct tttaagagag attgtgcaat gaaaaatttc aaagagagtg
     7801 gcatagaatg gcttggggaa attccggagc attgggaagt ggtgaaaatc aacaagatag
     7861 taacttttgt aaatggatat gcttttgaaa actttgattt taatccaatt tttgaaattc
     7921 ctgtgattcg tatcggagat atgcaaaagg aaaaaatttt atatgacaat tgcctaaaaa
     7981 caaaagaaaa agaaaaattg aaacaatttt taattagtaa taatgatatt ttaattgctt
     8041 taagtggagc aaccacagga aaaatagcat tttgtgatac tgataataaa gcttatatca
     8101 atcaaagagt tgccattgtt agaagtaaat taaaacttgt aaaatattat tttttaacta
     8161 gaggattttc attacttatt gagcttgctt gtaatggatc tgcacaacca aatatttcaa
     8221 ccaaagaaat aggggaattt aaaattccac ttccaccact aaaagagcaa gagcaaattg
     8281 caaatttttt agatgaaaaa tgcaaaaaaa tagcaaattt catagagaaa aaagaaaaac
     8341 tcatcacact tttaaaagaa caaaaacaag ccctgataaa tgaaactatc acaaaaggac
     8401 ttgataaaaa tataaatttc aaagatagtg gcatagaatg gcttggagaa attccacaac
     8461 attggaggat tgtgaaactt aaatatgtag cttttacaaa cataggattg gtttatactc
     8521 cagatgatat tattgaaaat cctgatgaag gatatccagt tttgcgtgcc aataatattc
     8581 aaaatggaaa aatagattat caagatttaa tttatataaa gtctaaacaa attggaaaaa
     8641 aacaaattat ctccagtgga gatttattaa tgtgcgtcag aaatggtagt gaaaatcttt
     8701 taggaaaaac agcaaaaatt caagatggat atttttcttt tggagctttt acagcaatta
     8761 tcaaaagtca atttaatgat tatttttatt ggatttttca aacaaatatg ttaagaaaat
     8821 ctattgctag tttttctgct tcaaatggaa ttgggcaaat ttcacaagac gatattaaaa
     8881 attttattat atcttttcca cccctaaaag aacaagagca aatcgcacaa tttttagatt
     8941 ctgaaatttc taaaatagat aaaattatag aaaaaaccaa aaaacaaata aaactcataa
     9001 aagaatacaa aaccacactc ataaaccaag cggtttgtgg taggattgat ttataaaagg
     9061 agaaatatgg aagaaaataa tttagaatat ataaaacaaa attttcaaat tcattattat
     9121 tttgatgata actctcattc aatgaatgct tttgttcgta atgctatgga aaaagatttt
     9181 ttaaatttta ttaatgaaat aggaaatatt ttagatatta aaattaaact tgaaagtcaa
     9241 gcaagagaag aaggtggg
//
LOCUS       DARGEM010000067         8738 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.067, whole genome shotgun sequence.
ACCESSION   DARGEM010000067 DARGEM010000000
VERSION     DARGEM010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8738
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.067"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(119..421)
                     /locus_tag="SFZ78_001164"
     CDS             complement(119..421)
                     /locus_tag="SFZ78_001164"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212033.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTTILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(418..1152)
                     /locus_tag="SFZ78_001165"
     CDS             complement(418..1152)
                     /locus_tag="SFZ78_001165"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG8212034.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSSAK"
     gene            complement(1152..1541)
                     /gene="fliW"
                     /locus_tag="SFZ78_001166"
     CDS             complement(1152..1541)
                     /gene="fliW"
                     /locus_tag="SFZ78_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG8212035.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            1702..2349
                     /locus_tag="SFZ78_001167"
     CDS             1702..2349
                     /locus_tag="SFZ78_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG8212036.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETILIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            2366..4741
                     /gene="lon"
                     /locus_tag="SFZ78_001168"
     CDS             2366..4741
                     /gene="lon"
                     /locus_tag="SFZ78_001168"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG8212037.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFILTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(4801..5061)
                     /gene="rpsR"
                     /locus_tag="SFZ78_001169"
     CDS             complement(4801..5061)
                     /gene="rpsR"
                     /locus_tag="SFZ78_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG8212038.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(5072..5623)
                     /locus_tag="SFZ78_001170"
     CDS             complement(5072..5623)
                     /locus_tag="SFZ78_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8212039.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(5632..6009)
                     /locus_tag="SFZ78_001171"
     CDS             complement(5632..6009)
                     /locus_tag="SFZ78_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG8212040.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(6096..6962)
                     /locus_tag="SFZ78_001172"
     CDS             complement(6096..6962)
                     /locus_tag="SFZ78_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG8212041.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFFLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(6955..8061)
                     /gene="rseP"
                     /locus_tag="SFZ78_001173"
     CDS             complement(6955..8061)
                     /gene="rseP"
                     /locus_tag="SFZ78_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG8212042.1"
                     /translation="MRSLLLLIVILTLGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(8058..8594)
                     /gene="pgsA"
                     /locus_tag="SFZ78_001174"
     CDS             complement(8058..8594)
                     /gene="pgsA"
                     /locus_tag="SFZ78_001174"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG8212043.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALFLTLC
                     SGFEYIYTYIKAQKKGEK"
BASE COUNT         3101 a         1191 c         1368 g         3078 t
ORIGIN      
        1 gtatgtaaag cagtaaaatt taaatgataa aaatccatta aaggttttga aagtaagcta
       61 gttataaaag taaaaagtat tagtgatgtt ataagttcaa aaagtgtaaa agctttgctc
      121 attctttaaa ataaacgcta taattttgat cttgaaagta taatttttga aattgaaata
      181 taccatcatt aacaaactgt tcttgtaaaa ctataggttt caaggctgaa gtttgaagta
      241 tggtggtttt aaaaataggc ttttcatata attcttcttg aagtttatag agtctttcaa
      301 aaatatttaa attttcatag tttttgtaaa gttgaatata gtaataaaaa atgccaatga
      361 aaattaaaga tatgatcgtt atagcactaa tgctttctat aagtatgaaa gcctttttca
      421 tttagcgctg ctactagcat ttatggcttc aaaaaaactt ccgcgaattc ctttttgttc
      481 gagtattttt atgcctttta ttgtaactcc gccaggggag caaatatttt ctttgataat
      541 agctggatgt tcatgttcta gtaaagcact agagctttta aataaagagc gcgtaagatt
      601 gagactaagt tcttttgaca aaccttcata aactccagca ttagcaatgc tttctgctat
      661 aagtgctaaa aaagcaggag cgcagccgct aattgccata gctgcattca tttgtatttc
      721 attatctaat ttataagccg agccaaaagt ttttaaaatg tctaaaattt cattttcaaa
      781 atgagagttt ttaagtatat atggtgttgt tgaagccttg tatttagctg ctgtattggg
      841 tattattcta acataatttt gagctttgat ggtttgtagt ttttcaaaat caacattggc
      901 taaaacagag attaagatac gtgcttgtcc ttttagcatt tgagcaatat tttctaaagc
      961 ataaggttta aatgctaaaa taacatcttt accttctatg ttaaaatctt tgtaaagtaa
     1021 ggttttaaag ccttctttgg cgagggcttg aagtttttct atacttcttc ctactataca
     1081 aatttcataa tcatctttta acccataggc taaggctgtt gccatagatc catttgcaag
     1141 tatatagagc attatttttt aatataatta gcaatttgat cagcttgaaa aaagtcggga
     1201 taattaactg tatctagtat cacttgtacc atagtattat tatcaagatt aatgactact
     1261 ggagctagaa aattcactgt cgattcttca atgctttttg ctatggctac tatattaaaa
     1321 attttcatat tagattcagg tgttaaagaa agaagctctt gataataagt tggtatatca
     1381 aattcataat caggtctaat caaataagga ttaattaaaa caaaagaaaa gtctttacca
     1441 tcaagacttt taagtcttac aaatacttca tcgatagttg aaaattccat atttttggtt
     1501 tcttcaaaac ctaagatagg gcatttaaca gctagggtca tgttttctcc tcaagttata
     1561 atgtttaata ttttaacata aaataagcaa taatcattcc aaaattttaa attatttaat
     1621 taattttatt ataattttag aagaacataa ttataaaatc gttaaaatat atatttttga
     1681 gaatataaat caaggtgaag tatgaaaaaa ggtatttttt tattggtttt tttaagtgtt
     1741 ttttttagtg cgtgtagtac gaaaaatgat gaaggtttat acaatcttag tgctagtgag
     1801 tggtataagc aaattattaa agatttgcag gacaaggatt tggaaaaagc tgatgatcat
     1861 tataatggta tggcaagtga gcatgttgcc gatcctttat tggaaactat tttaattatt
     1921 ttagcacaag ctcatatgga tgaagaggaa tataagttag ctgaatttta tttagatgaa
     1981 tataataaaa aatttggaaa ttcacgcaat gctgattata ttcgttatct taaaattaag
     2041 gcaaaatttg atgcatttgc agtgccaaat cgtaatcagg ctttaatgct tgaaagccaa
     2101 aaagaaatag atactttttt gaaagattat ccttatacag aatatgaacc tttggttcaa
     2161 acaatgctta caaaatttaa tttagcggtt ttttatctta atagtactat agaaaatcta
     2221 taccagcgca tagggcatga tgaaagtgca caaatttata aacaaagact tcaagaaagt
     2281 gaattttatc agcaaagtat tatcaaacct gagcttcctt ggtatagaag tatatttgaa
     2341 agattttaat aaacaaggaa aataaatgca gattgaagag atacaaaatt atccagcaaa
     2401 tttaccagta ttggttgaag atgaattatt tttatatcct tttatgataa ctcctatttt
     2461 tattaacgat tcatccaata tgaaagcttt agatcttgcg attaaaaatg atagcatgct
     2521 ttttgttgca ccttcaaagt tggaaaatgg aagaaatttt gatgaaattt ataattgcgg
     2581 agtgattggg actatcatgc gaaaagttcc tttgcctgat ggaagagtga aaatactttt
     2641 tcaaggatat gccaagggta aaattataga gcaaatttct aataaacctt tagaagccaa
     2701 gatagaactt ataaaagaag actttttaga aggaactaaa aaagaagcac ttcttgaagt
     2761 tttaaaagag aaagtaaaaa atttggcaaa tattagtcat tatttttctc cagatctttt
     2821 aagaacaatt gaagaaggtt ttgatgcatc taggatttgc gatttgattt taaatactgt
     2881 gcgtattaaa aaacaagttg cttatgagtt ttttatttta acagatcttg agcaaaaatt
     2941 agtaaaatta atagatttaa ttgctcaaga aatagaagct aataaaattc aaaaagaaat
     3001 taaaaataaa gtacattctc gtattgataa ggtaaataaa gaatattttt taaaagaaca
     3061 attaagacaa attcaaaaag agcttggttc tgatacgcaa aaagaagatg aggttagaga
     3121 gtatcaaaag cgtctggagt taaagaagaa atttatgcac gaagacgctt ataaagaaat
     3181 caaaaaacaa attgaaaaat tcgaacgcat tcatcaagat aattccgaag catcgatgat
     3241 tcaaacttac atagaaacag cattagatgt tccttttgaa aaaatttcta agaaaaaact
     3301 tgatattaag gaagtttcaa aacagctcaa ccatgatcat tatgcattaa ataaaccaaa
     3361 agaacgcata gaagaatatt ttgcagttag ggaactttta gaaaaaagaa aaatagcaga
     3421 aaaagatggt gctaaagtta tactttgtct ttatgggcct cctggtgttg gtaaaacttc
     3481 actggcaaat tctgtttcaa aagctttaaa aagagagctt attcgtatag ccttaggtgg
     3541 acttgaagat gttaatgagc tgcgtggtca tcgtagaact tatataggcg ctatgcctgg
     3601 acgtattact caaggactca tagaggcaaa acaaattaat cctgtaattg tattggatga
     3661 aattgataaa ttaaatcgca gttttagagg cgatccaagt gcggtgcttt tagaaatttt
     3721 agatccagag caaaattcta aatttaggga ttattattta aattttaata ttgatttaag
     3781 taaagtcatt tttatagcaa cggcaaatga tattagcaat attcctgcac ctttaagaga
     3841 tagaatggaa tttatagaac ttagctctta tactccaagt gaaaaatttc atataatgaa
     3901 aaaatattta attccagatg agcttaaaaa acatggctta aaatccaatg aattatttat
     3961 tgatgatgaa actatagagc taatcattag cgattatact cgtgaatcag gagttagaaa
     4021 tttgcgtcgc aaagtggcag agttgtgtcg taagagtgct aaaaaactac ttttagaaaa
     4081 tattaaaaaa gtcattatta atacaaaaaa tttgaatgaa tttttagata aaaaagtttt
     4141 tgaaatagaa aaaaataatg gagaaaatca agtaggtcag gtcaatggtt tggcttggac
     4201 aagcgtaggt ggagatgttt taaaagtaga ggctgtaaaa attaaaggta aaggagaatt
     4261 aacgctcaca ggaagtttgg gtgatgtaat gaaagaatca gctagaattg cttttagcat
     4321 gataaaagtt ttaatcgatg aaggaaaaat aaaaatacct aaaaaaataa ttattgatcc
     4381 taaagttaat gtttatgata gttataatat tcatatacat gtgccagatg gagctactcc
     4441 aaaagatggc ccaagtgcag gtattacgat aagcacagct attgcttcta tttttagtga
     4501 taaaaaggtt aaagcagatg ttgcaatgac gggtgaaata gatttaaaag gaaaagtttt
     4561 accaataggc ggattaaaag aaaaattaat tgcagcttat aaagcagata taaaaacagc
     4621 tttaattcca agaaaaaatt acgaaagaga tttaaaagat attcctagtg aggttagaga
     4681 caatatggaa atcattgctg ttgatacttt cagtgatgtt ttagaatata ctttggttta
     4741 actttatttt gagaataaat gtataagaaa gcaaactttt tacaagtttg ctttaaaaga
     4801 ttatagtcct tcaaaaggat tattgattac ttcttttcta tccactatat aagggataag
     4861 ggctacatgt cttgcgcgtt tgattgcaac ttctaccatt tcttggtatt ttttgcttgt
     4921 gcctgttaaa cggcgtggca tgattttaaa tctttcagat aaagcatgtt ttaacattgc
     4981 tgtatcttta taatcaataa attcaacttt tgcttcagtg tatttgcaat atttgcgaga
     5041 gtattttctt ttttctgcca tagtttatcc tttaaaatgg taaattagta tcatcgctat
     5101 cataagcatc gatatcaatt tcttttaatt tttcttcgtg ttgtgggttt tggtttcttt
     5161 gtggagcagg gtttgctttt gctttattaa aattttgatt ttcactcata taaggatcat
     5221 agctttgatt ttcatagttt ccactataat tgttgtttga aaagctatta ttgccaaaat
     5281 ttccgccttg ttgtggagca ttggaattgc caagcatttc catattttca acttgaatgc
     5341 tatgtttaga gcgattttgt ccattttgat cactccattg ttcaaatctc aaacgtcctt
     5401 ctatgagtac ttttgaacct tttgtaaggt attggtttgc aacttctgcg gtgcgaccat
     5461 aaaagcttat atcaataaag caagtttctt ctcttttttc tccatttgcg gtaaatcttc
     5521 ttgttactgc tatagcggaa gctccaatag cactaccgct ttgtgcataa cgcatttcta
     5581 tatcacgtgt aagatttcca accaaaacaa ctttgttaaa catctttttc cttattgaat
     5641 ttcaggagca tctaaaggtt taatttcttt tttagattgc ttaatcccgt ggcttagttt
     5701 ttcccaagct gcaatttctt ttttattttc atattttacg attaaaaatc ttattacttc
     5761 ttcagtgatt cttaacaccc tttcaagctc agcgatcaag tttgtaggag ctttgaaata
     5821 aatcacaaaa taagttcctc tttcgtattt tttgatttta tacgctaatt ttctagtacc
     5881 cattggaaca acagtttcaa tttctgcact atttttggtt aggacttctt taacgaattc
     5941 caacttcgca ttcacttcct cttcagtaag tgttggtttt aagataaata aaacctcata
     6001 atgtttcatc ttttctcctt atggatatta aagcccattt ttatgagcaa ggattttgca
     6061 taaagcaaga ctagattata tcaaaatata cttaattagt cttgaatact taaggtttta
     6121 tctaaatttg ttttgatttc ttcaagcata gcaaaacgtt ttttatacat ggagcgtttt
     6181 tgcgaaggga tttcttctag gtttttttga gagtggtgga gtttatagta tttgtgttta
     6241 ttgattttta ttaattctcc accattttct agccaaattt tttgataatc tacaaaatag
     6301 cctttttctt ttcctttttg agaacggatt tgattttttt catgtacacc taaagtagct
     6361 tgaagtttta aaatttcaca aagcatctta gagcattcta taagtaaagc aacagggcgc
     6421 aaaccatgac attttttagt taaaatttta ttaatttcta aaatattaaa atctttgtat
     6481 ttatgtcctt gtatacaaga aagtagaaga ttgttttcta aagtaaagca aaaattacat
     6541 tgtaagattg tgtatttttt aaattttaaa aaaaaagccc aaaaaccttc ttcgcaaaca
     6601 ttatagttat atcctaaaaa aagctcaaaa tcttcatcaa aagaaaaaat tatttgttcc
     6661 tcgggaagaa atttaaaaca agcgagtccc ttatcaacat cataaataag tgttttaaca
     6721 cgttcatttg ctttaaaact tttatcgcaa aatcttcttg tagcattgta acaagcatag
     6781 ggtctttgag agaaaaagtc ttttaaatgt ttattttttt ctttattaag cgttttttct
     6841 agaagtctta cttgaggaaa atataaaatt tttcttgctt gaaaacgcaa atagcgccaa
     6901 aagattatac tttttcttct atcagtaaaa tttggaatag ggtaggaaaa ttttttattc
     6961 acctataatc cttgatatat cattataagt tgcaaagagc attaaactta aaagtattgc
     7021 catgcctgta tagcttaaat attcaaaagt acgctgtgga actttgcgtc taaaaatcat
     7081 ttcataaaga ttaaaaagta tatgtcctcc atcaagcata ggaataggta aaagatttaa
     7141 aatgcctaaa tttatagaaa ttaaagcagt gataaataaa agcaaagtaa agctattttg
     7201 tgcagccttt gaggtaattt cagtcatggt gataataccg cctaaatttt ttgcttcaac
     7261 ttcaccactt atgagtttta caataccctt gatgatgagt gtagaagctt gaaaactttc
     7321 ttgtgcggca tatttaaaac tttctaaacc ttggtgtttt acaagagtgc ttgtcccatt
     7381 tggactgact ccaagttgag gtttttcaac gatttgtcca aagtcattgt atccttgtcc
     7441 tatttttgga gttaaaataa attctaaatt ttttccttct ctattgatta gtattttcaa
     7501 aggatctaaa cttaaatgct ttgaaatttc atcaaaggtt tgaattctta taccgttaat
     7561 ttctaagata gtatcatttt tttgaagtcc tatttcttgt gcagcagagt ttggcgctat
     7621 gtttcctatt tgcggagcaa gtttgtttag acctaaattt cctatgataa tataaagaaa
     7681 aaaagctaaa attagattaa aaaatggtcc agcaaaaaga atataaatct tttttaaagg
     7741 acttaaaatg ctatagctat ctttgtctag attttcaaaa ccaggacgca tatcatcttg
     7801 tcctttaagt ttaacatatc ctccaagtgg taaagtgctt aagcgatagt ttgtgccttt
     7861 aaattcacgc tctataagac tttttccaaa tcctatacta aaaacttcaa cttttacacc
     7921 caaagatctt gcagccaaaa aatgtcctaa ttcgtgaaag aaaattaaaa atgagatgac
     7981 taaaacagtt gctaaaaatt caatagaata aaatttaatt cccaaagtca aaataacaat
     8041 taaaagcaat aaagatctca tttttctcct tttttttgag cttttatata agtatagatg
     8101 tattcaaatc cagaacaaag agttaaaaac aaagctatgt aaagtagaat ttcaccgcct
     8161 atccactcca tgattaaaaa tcctatcgca gtcatttgaa aagcggtttt aagcttgcct
     8221 gcaaaagaag cattgacatt taaattttca ctgatcatta caactctaaa acccgtgata
     8281 aaaaattccc ttactagtat aatataaatt acccattcat tagcttttcc tgtaagtaaa
     8341 agccctaaaa aagctgctaa aacaagcatt ttatcggcta atggatctaa gattccaccc
     8401 agttttgtag tttgtttcca agttcttgcg atgtatccat caaaaaaatc acttaaagct
     8461 gctaatgaaa aagttaaagc agcaaaatag ttaatccaac tttgatgaat attttcaaaa
     8521 tgatgaatta ataaaaaaaa tagcaaaggc gctaaaacca ttctaaaaat cgccaagata
     8581 ttgggtaaat tcataacaag ccttgtgaaa ttaaatgtaa aattataatc aaaattgtat
     8641 aaaatttaag caaagactta gtaaaaatac aaaaaagaat cagtttattt ttatttaaat
     8701 tttgctttta agcaaaattt aaataaattt tacaactt
//
LOCUS       DARGEM010000068         8688 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.068, whole genome shotgun sequence.
ACCESSION   DARGEM010000068 DARGEM010000000
VERSION     DARGEM010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.068"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            3..1100
                     /locus_tag="SFZ78_001175"
     CDS             3..1100
                     /locus_tag="SFZ78_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG8212044.1"
                     /translation="MPNTRPGINFTKDKEGKNICSACINHKNKENIDYKARFKELEVL
                     CDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFTMTEAGKKN
                     LKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFAMALKFNTP
                     LLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENLQLFFNPNK
                     DKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQVDSIGYILH
                     AWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDFCNFIGISK
                     TTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1118..1793
                     /locus_tag="SFZ78_001176"
                     /pseudo
     CDS             1118..1793
                     /locus_tag="SFZ78_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            1833..2837
                     /gene="legI"
                     /locus_tag="SFZ78_001177"
     CDS             1833..2837
                     /gene="legI"
                     /locus_tag="SFZ78_001177"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG8212045.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNITFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIKKGEIFSEGNLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            2830..3984
                     /gene="legG"
                     /locus_tag="SFZ78_001178"
     CDS             2830..3984
                     /gene="legG"
                     /locus_tag="SFZ78_001178"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8212046.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNGKNPNKIIKTCLKNVNLDTILHKNFIDL"
     gene            3993..5018
                     /locus_tag="SFZ78_001179"
     CDS             3993..5018
                     /locus_tag="SFZ78_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8212047.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNALLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            5015..5920
                     /gene="ptmF"
                     /locus_tag="SFZ78_001180"
     CDS             5015..5920
                     /gene="ptmF"
                     /locus_tag="SFZ78_001180"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEG8212048.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     CSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFEKSQNFTSSKNH
                     IYVAYLQRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     AKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            5913..6620
                     /gene="legF"
                     /locus_tag="SFZ78_001181"
                     /gene_synonym="ptmB"
     CDS             5913..6620
                     /gene="legF"
                     /locus_tag="SFZ78_001181"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG8212049.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINKLEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRTAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            6620..7390
                     /gene="ptmA"
                     /locus_tag="SFZ78_001182"
     CDS             6620..7390
                     /gene="ptmA"
                     /locus_tag="SFZ78_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEG8212050.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            7378..>8688
                     /locus_tag="SFZ78_001183"
     CDS             7378..>8688
                     /locus_tag="SFZ78_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212051.1"
                     /translation="MGLMMTFTPTQKELFNKNIEALSNILLKESLKQIQSSKFELILG
                     KDNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHVLDFSNELQNSRLMILQTSSLDIELFSNFCSSKPFF
                     QFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNL
                     PQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPIL
                     AKHGIKPDYVCMLERDEIVAECFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFI
                     LVSTYASFIQYLKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLAYAKDGQTH
                     SQGFIHANLHNGDYERDLDKFSTTAYGGNGKVQSSEIWTLFRHNF"
BASE COUNT         3320 a         1245 c         1413 g         2710 t
ORIGIN      
        1 tgatgccaaa tactagacct ggtattaatt ttacaaaaga taaagaaggt aaaaatatct
       61 gttcagcttg catcaatcat aaaaataaag aaaatattga ttataaagca aggtttaaag
      121 agcttgaagt cttatgtgat aaataccgca gaatgaatgg aaaatttgaa tatgattgtg
      181 ctattgccgt aagtggaggt aaagattcgc attttcaagt gcatatcatg aaagaaaaac
      241 ttggaatgaa tcctattctt tttagcgttg aagataattt caccatgact gaagcaggca
      301 agaaaaatct taaaaattta agtgaaactt ttggttgtca tatcattagc ttaaagcctg
      361 atatcaaaac tcaaaaaaaa gttatgctaa aaacctttga aaaatatgga aaacctactt
      421 ggtttattga tagactgatt tacagctatc cttttgctat ggctttaaaa tttaatacac
      481 ctttattggt ttatggagaa aatgttagtt atgaatatgg aggtagtgat accgaagaaa
      541 ctcctagcgc taaagaaata tttttaaatg gtgtagctag tgatttaaat ataaatgaat
      601 ttatagatga tgaaatcaaa gaagaaaatt tgcaactctt tttcaatcca aacaaagata
      661 aactcgataa acttaaccct atctatctaa gttattttgt aaaatggaat tcttatagca
      721 attatatttt tgctaaaagt cgtggtttta ctgatctaga aggcgaatgg gatagaacaa
      781 tgtgtgcaga aaattttgat caagttgata gtataggcta tatcctacac gcttggatga
      841 aataccctaa atttggtcat gcttgtgcga gtgattacgc agctcgtttc gtgcgttatg
      901 gacttttaag cagaaaagaa gctattgaac ttgtgcaaaa aagagatcat aagcttgaca
      961 ataaatgcgt tgaagatttt tgcaatttca taggtattag taaaactaca ttttggaaaa
     1021 tagtagaaaa acattacaat atggatttat tttataaaaa tgattttgga gaatttaaat
     1081 taaaaaacaa attacaataa aaatataaag gaaaaaaatg caaaactcat tagaagctta
     1141 tacaatgaaa tataatgaaa atggatacgg attacttttt ccagatggtc atgtagtacg
     1201 tttttatgaa agaattttaa aatacaaact aaataaaata aatggaaatt tacttgattt
     1261 tggttgtggc aatggtgtac attcagcgta ttttcaaagc aaagggttta aaacttttgg
     1321 aatagatata gttccaagtt taaaagaaat ttgggagcaa aatattagcg gggggggggt
     1381 attgtaaaat tatagaacca aattctagca tcaaaggact ttttgatgaa aatatggata
     1441 ttatctttgc aaatcaaagt ctttactaca tacctctaaa agaacttaaa caaaatattt
     1501 tagaatttta cgaacttttg aacacaggtg gaatactttt tgctacaatg atgagcaaga
     1561 aaaattatta tttttcccac agtcaaaaag aagaaaaaaa tggcttgagt aaagttgaaa
     1621 ttaatggaag attaaatgaa acaagcttta tacattttat tgataaagcc caagatctag
     1681 aaaatctttt tcaacctttt gaaactttat ttttaggaga ttatgatcct attaattttt
     1741 ataattttga aggatcagca caccattaca tttatgtagg tattaaaaaa taaaattttg
     1801 cctttatttt aaggcaaaat aaaggcaaaa ctatgaaaaa aactcttatc atcgcagaag
     1861 caggagttaa tcacaatggt gatttaaatt tagctaaaaa gttaatagaa atcgcagcag
     1921 attcaggggc tgattttgtt aaatttcaaa gttttaaagc caaaaactgt atcagcacaa
     1981 aggctaaaaa agcaccctat cagcttaaaa ccacggctag tgatgagagt cagcttcaaa
     2041 tggtacaaaa actcgaactc gatcttaaag ctcataaaga gcttatctta cacgcaaaaa
     2101 aatgcaatat tacctttctt tctactcctt ttgatcttga aagtgtagat cttttaaatg
     2161 agttaggctt aaaaatcttt aaaattccaa gcggagaaat caccaatcta ccctatctta
     2221 aaaaaattgc aaagcttaat aaaaaaatca tactttcaac aggcatggca aatttaggcg
     2281 agatagaaga agctttaaat gtgctttgca aaaatggcgc taaacgccaa aatatcactc
     2341 ttttacactg cactacagaa taccctgccc cttttaatga agtcaatctt aaagccatgc
     2401 aaagcttaaa agacgctttt aagcttgatg tgggttattc tgatcacaca aggggtatac
     2461 acatttccct agctgcggtt gccttgggag cttgtgtgat agaaaagcat tttactctag
     2521 acaaaaatat gtcagggcct gatcataaag caagcctaga acctcaagaa ctaaaaatgc
     2581 tttgtaccca aataagacaa atacaaaagg caatgggtga tggcataaaa aaagcaagca
     2641 aaagcgaaca aaaaaatatc aacatagtaa gaaaaagttt agtggccaaa aaagacatca
     2701 aaaaaggaga aatttttagc gaaggaaatc ttactaccaa acgccccgca aatggtataa
     2761 gtgctatgag atatgaagag tttttgggta agattgctac taaaaactac aaagaagatg
     2821 agcttatccg tgagtaaaag aaaaatttgt atagtcagtg caacaagggc tgaatggtat
     2881 cttttaagaa atttatgtca tgaaattcaa aacgataaag atctaagcct tcaaatcatc
     2941 gctacaggag cacatttaag ccctgagttt ggactcactt ataaagaaat agaaaaagaa
     3001 tttaaaataa ctaaaaaaat ccctatcctg cttgcaaacg atgataaaat aagcctttgt
     3061 aaaagtatga gtttagcttt tagtgctttt agcgatgctt ttgaagactt aaaacctgat
     3121 atggtggtga ttttaggcga tcgttatgaa atgcttagcg tagcaagtgt atgtctattg
     3181 atgcacatac ctttagtgca tttatgtggc ggggagctta ctttaggggc tattgatgat
     3241 agtataagac acagcatttc aaaaatgtca catttacatt ttgtaagtca tgaaatttat
     3301 aaaaaaaggc ttttgcaact tggagaagaa gaaaaaaggg tttttaatat aggttcttta
     3361 gcttctacta tcataaaaaa tatgaatttt ttaaacaaaa aagatttaga aaaagcctta
     3421 gaaatgaaac tagataaaga actttactta atcacttatc atcctttaac tttaaatgta
     3481 aaaaatactc aaaaagagat taaaacctta cttaaaaaac ttgacaccct taaaaatgca
     3541 agtttgattt ttaccaaagc aaatgccgat gaaaatggac ttttaatcaa tgaaattttg
     3601 caaaattact gccaaaaaaa ctcacacaag gctaaacttt ttgataatct tggctcacaa
     3661 aaatacctaa gtcttatgaa aatagccaag gccatgatag gcaattcttc aagtggtatt
     3721 agtgaaagtc ctttttttaa aactccttgc attaatatag gcgatagaca aaaagggcgt
     3781 ttaagaactc aaaatatcat tgattccgaa atcaacgatc ttgatcaagc ttttgaaaaa
     3841 ttagaaagca aagaatttaa acaaaattta aaaaatttta aaaaccctta tgataatggt
     3901 aaaaatccta ataaaatcat aaaaacttgc ctaaaaaatg taaatttaga tacaatttta
     3961 cataaaaatt tcatcgattt ataaggctta gtgtggatat aaacaaactc aaactcaccc
     4021 ctgattctag cataaaagaa gctttaaaaa tagtcgggca agaacgcgtt agattaggca
     4081 ttatagttga taaaaaggat aaatttttag gagtcattag cgattcaaac atcagaaaag
     4141 ctttaattag tggcaaaact ttaaaagata gtatcaaaga tatttacact aaaaatccca
     4201 tcaccataaa agaaaacaca agcaaagaac agcttttaaa aatttctgct aaaaccgata
     4261 tttacgactt tcctgtttta gatgaaaaag ggcaaattct ttctataaaa tctatctcat
     4321 cacttttaaa agccaatcca aactccatta tcatcatggc tggaggctta ggctctcgct
     4381 taaaagagct gactaaagat actccaaaac ctatgttaaa agtaggcaaa aaacccattt
     4441 tagaaagcat aatccaaaga cttaaaaatc aaaattttga aaattttatc ttttgtgtga
     4501 attataaaaa acaaatcata gaagattatt ttcaaaaagg gcaaaaattt ggggttaaaa
     4561 tttcttatat taaagagcgt aaaaaactag gtacagcagg ggctttaagc cttataaaac
     4621 aagaatttaa agaaagtttt atcgttatga atgcagacat tttaaccgag ctggatttta
     4681 atgctctttt aaaagcgcat aaaaaatcaa aagctttaat gagcgtttgc gtgcgtgagt
     4741 ttgagcaaca aattccttat ggagtgatca ctcaaaaaca aggttttata gaaaatatag
     4801 aagaaaaacc tacccaaaaa ttcctagtaa gtgcggggat ttatgtactt gaaaatgaaa
     4861 ttttaaattt aattgctaaa aatgaatact tagacatgcc cgaactcatc aaacttgtat
     4921 tgcaaaaagg caaggtaaat acctatatca tcaacgatta ttggattgac attggaaggc
     4981 cagatgagtt tttaaaagcc aatgaggatt ttaaatgaaa gtcttaatca taggctttgg
     5041 aagcatagga aaaaagcatt ttttagcctt aaaaaattta aatcatgaag taagtttgct
     5101 ttctttaagt gctaaaaaag aagaatttaa aaacactcca atttattgct ctttgaaaga
     5161 atgtgattta aacgaatttg atctttttat catcgcaaat atcactacgg agcattttaa
     5221 caccttaaaa actttagatg agcttgtaaa agataaaacc atactcgtag aaaaaccttt
     5281 atttgaaaaa agccaaaatt tcacaagctc aaaaaatcac atttatgtag catatttaca
     5341 acgttttaat cctgtgattg tcgctttaaa aaggctttta aaaggtgaaa aaatttattt
     5401 tgctagtttg gtttgtaatt cttatttgcc ccattggaga gctttagact acaggcaaaa
     5461 ttacagcgct aaaaaagagc taggtggtgg ggttttactc gatctctctc atgaaatcga
     5521 tctagccttt tttcttttta aagacttaga gcttatatac tcccaaaatg ctaaaatttc
     5581 agagcttgac ataacaagcg atgattttgc ctttttggct ttaaaaaatt cacaagaagc
     5641 taaaattcat atagaactag actattttgc taaatttaac aaaagagaaa ttatcatcca
     5701 tactttagaa aaaagcttta aagccgattt gataaacaat aaaatcgaaa tttatcacaa
     5761 aaatcaaagt caaaaaatct taaattttga aaatgatacg ataaaaaccc ttcaaaattt
     5821 acatcatgca gtctttgaaa aagacaaaga actttgcgat cttaagcagg ctttaaaagt
     5881 gcttgaactt tgtgatgaag taaggaaaaa aaatggctga aattttatgt actatttgtg
     5941 ctaggggtgg tagcaaaggc gttaaaaaca aaaatattag aaagattaac aaacttgaaa
     6001 tgatagctta tagcatcata caagctcaaa attcaaagct ttttaaacac atagtcataa
     6061 gtactgatag tgatgaaatc gcaagtgtag cccaaaaata tggcgctgaa gtttttttca
     6121 aaagagaagc tcatcttgcc aatgatcgga ctgcaaaact tcctgtcatg cgtgatgcct
     6181 tgctaagaag tgaagagcat tttaaaacgt gttttgaaac tctcatagac ttagatgctt
     6241 cagccccgct tcgctcaagc cttgatataa aaaaagctta tgaaagtttt gttgaaaatg
     6301 ataattccaa tctcatcacc gcagttcctg ctagacgcaa tccttatttt aacctcgtag
     6361 aaatacaaaa taacaaggta gtaaaatcca aagaaggaaa ttttaccact cgccaaagtg
     6421 ccccaaaatg ctatgatatg aacgctagta tttatatctt taaaagggat tatcttttag
     6481 aaaatgatag tgtttttggc aaaaacacag ggctttttgt aatggatgaa agcacagctt
     6541 ttgatattga tagcgagctt gattttaaaa tcgtagagtt tttaatctct ttaaaaaatt
     6601 tatcgccaaa ggatttttaa tgcttgaaaa taaaatcatc tttgtagcag gagcttgtgg
     6661 gcgtataggt aaagcgcttt gtcaaaaaat acttcttagc aaaggtatcc ctatactcgc
     6721 agatatcaac aaagaatgct taaataaatt gcaagaaaat ttagaaacaa attttaaaac
     6781 aaaactttta agcttagaac ttgatatcac taaacaagaa agcttacaaa ccgcccttca
     6841 aaaaagtcaa gaaagatacg gcaaaatcga tgcttttgtt aactcaagct atccttttgg
     6901 caaagattgg ggtaaaacgc cttattatga actcaaatac gaacaaattt gtgaaagttt
     6961 aaatttacat ttagcaggct ttatgctagc cgctcaagaa tttgtgaaat tttttaaaca
     7021 acaaggctat ggtaatatca tcaatcttag ctccatcatg ggagtttatg cgccaaaatt
     7081 tgaaaactat gaaggcactt ccatgcaaag ctctttagaa tacagtgtga taaaagcagg
     7141 gattaatcac atgagctctt ggctagctaa agagcttttt aatcaaaaca tacgcgttaa
     7201 taccctagca agtggaggaa ttttggataa tcaaaatgaa ctttttttaa aagcttatag
     7261 aaaatgttgt gcaagcaagg gtatgttaga tgctgatgat gtgtgcggaa ccttggtatt
     7321 tttgcttagt gatgagagta gatttatcac agggcaaacc ttagtagtag atgatggatg
     7381 gggcttatga tgaccttcac ccctactcaa aaagaacttt ttaataaaaa cattgaggct
     7441 ttaagtaata ttcttttaaa agaaagttta aaacaaatcc agtctagtaa atttgaactt
     7501 atcttaggta aagataatct agatatcaat ctaaaagata caagtgataa tacttttctt
     7561 tatgaaaatg ttattgatga attaaacact atgttaaaca cctataatga caaataccta
     7621 ctttatcctg tattgtattt ttatggtttt ggaaatggaa ttttatttaa agctttattg
     7681 caaaataaaa atcatcaaca tattgtggtt tttgaaaaag atatagaaat catttggata
     7741 atgtttcatg tcttagattt ttcaaatgaa ttacaaaatt caagattgat gattttgcaa
     7801 acaagttctt tggatataga attgttttct aatttttgct ctagcaagcc tttctttcaa
     7861 ttttctagaa tttatttttt agaactgatg agtcattatt atgaaagatt tcatgaggat
     7921 gttttggagt taaataaaaa gctagtgcaa gattttaaag attccattct ttctcatggt
     7981 aatgatcctc ttgatgctct tcaaggcata gaacaatttg tctataatct tcctcaaatg
     8041 attactcatc ctagttataa agaattactt tctaaaagaa aaaatttaag tgatacagct
     8101 attattgttt ctacaggacc aagtttaact aaacaacttc ctttattaaa gaagtatgct
     8161 aataaagcta cgattttttg tgcagattct tcttatccta ttttagctaa gcatggtata
     8221 aagcctgatt atgtttgtat gttggaacgc gatgaaatag tagctgaatg ttttaataat
     8281 gattttgggg aatttgataa ggatattgtg tttattgtta aatctgttac acatcctcac
     8341 actatcaaat atcttcaaaa aaataataga gcttttatac ttgtatccac ctatgcaagc
     8401 tttatacaat atttaaaatt agattatttt ggatatttta atatgggatt tagcgtagca
     8461 catatgaatt ttttattaac cattcatcta aaatacaaaa acatcattct cataggtcag
     8521 gatttagctt atgccaaaga tgggcaaaca cattctcaag gtttcatcca tgctaattta
     8581 cacaatggag actatgaaag ggacttagat aaatttagca ctacagctta tggaggaaat
     8641 ggaaaagttc aaagttctga aatttggaca ctttttagac ataacttt
//
LOCUS       DARGEM010000069         8582 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.069, whole genome shotgun sequence.
ACCESSION   DARGEM010000069 DARGEM010000000
VERSION     DARGEM010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8582
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.069"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            38..2128
                     /locus_tag="SFZ78_001184"
     CDS             38..2128
                     /locus_tag="SFZ78_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG8212052.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKARAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFESSGMENKIGAVDSGLKLKIESLFSK
                     GMALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSREFIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDTKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2125..2664
                     /locus_tag="SFZ78_001185"
     CDS             2125..2664
                     /locus_tag="SFZ78_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG8212053.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGYPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2747..4150
                     /locus_tag="SFZ78_001186"
     CDS             2747..4150
                     /locus_tag="SFZ78_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8212054.1"
                     /translation="MSIYFMHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4137..5429
                     /locus_tag="SFZ78_001187"
     CDS             4137..5429
                     /locus_tag="SFZ78_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212055.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWVKD
                     DSNEIMLDEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGAGAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5419..6537
                     /locus_tag="SFZ78_001188"
     CDS             5419..6537
                     /locus_tag="SFZ78_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8212056.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNIEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     SNGKNTKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKVKT
                     QAISNEFIDAKPISSVSLSEGLVLRKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            6534..7187
                     /locus_tag="SFZ78_001189"
     CDS             6534..7187
                     /locus_tag="SFZ78_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8212057.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7184..7672
                     /locus_tag="SFZ78_001190"
     CDS             7184..7672
                     /locus_tag="SFZ78_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8212058.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLTS
                     LL"
     gene            7633..8136
                     /gene="traF"
                     /locus_tag="SFZ78_001191"
     CDS             7633..8136
                     /gene="traF"
                     /locus_tag="SFZ78_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG8212059.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFAFVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8145..8582)
                     /locus_tag="SFZ78_001192"
     CDS             complement(8145..8582)
                     /locus_tag="SFZ78_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG8212060.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYG
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPDMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         2980 a         1308 c         1402 g         2892 t
ORIGIN      
        1 taaatattat ttttatcaaa aatcaaggat aatgataatg aaaattttta aaattatatt
       61 tttaattata agtatttttt tatcaagctc agcttttgct agggtagatg attatattaa
      121 tgaagcaaat cttatcaaag atatgctaaa acaaagcata gaaacttata aaaagggcga
      181 taatctaggc gccaaaaagc ttagcgaaga tgcgtatttt caacattttg aaaatatgga
      241 aggctcaata ggaagaaaca taggaagaaa agctatcact atggagcgta aatttgtaaa
      301 tttgcgtcgc atgtataaag atgaagctcc tttgacacaa attaatgctt taattgatag
      361 tctttattat gatcttgatg aagtagctcc gattttacaa aatggatatc gtttaaaagc
      421 agaagcaagc gatataaact atgataaggc tagagctgaa aaatcaagcc tagaagccaa
      481 tgccaaacgc gaagctgatg cagaagcttt aatcgcacaa atgatgggtg tagataaaaa
      541 agatttagca caaagctctt taaccaccca agctcctata cctgtaaata atgatacaag
      601 caaacttata gatgataatg caagcaccga tttacaagct gccgctgcaa tggacgtaag
      661 attgcaattt atactagata atatctctac caaattttca caggcagcta atgcttttaa
      721 agaaaaaaac taccaaacta gtaaagattt tttaaatgat gccttattta gtgattatcg
      781 caataccaaa gtagaaattt tagtaaataa atttaccaaa gcaggaaacg atcaaaaaat
      841 tcaacaagcc atacgcaccc ttatacgcca aatcaacgat gcaaaaatag atgaaaaagg
      901 cttaagagat ggcttagata acatagaaga acaaattttt gatgttttct tacaaattcc
      961 aaattcagaa ctttcaagtt tgcaaatttc aggctttaat gatgaaacaa aaggcaaaga
     1021 ttatgccaaa gtttctaatg atatcaaact tgctttagat gaaattttaa aaaattatga
     1081 tggctttagc acttctatgg tagatgattt acaaggaatt tatctagata tttttgaatc
     1141 aagcggtatg gaaaataaaa tcggtgctgt agatagtggc ttaaaactta aaatagaaag
     1201 tttattttcc aaaggcatgg cactgattaa agcaagtgca gataaaaaag agcttgaagc
     1261 tacttttaat gacttagaac aactcatagc cagcagcgtg gataaaattc aagattctac
     1321 tccttattcg ctgtttatat gggctttagg tattattttg cgtgaaggct tggaagcttt
     1381 gattatcatt gtagccattg tttcttatct tgtgcaaagt ggcaacaaaa atcgtctaaa
     1441 tatcgcctat agtgctcttt ttacaggagt gattttaagt tttattaccg cttttggagt
     1501 ttcttggcta tttaaagaaa atgcaggtca aagtagagag tttatagaag gtattaccat
     1561 gcttatagcc gtattactac tcttttatgt gggcttttgg ctactttcaa acgcacaaaa
     1621 taaaaaatgg acaagcttta tcaaacaagg tgctatagat gctatatcaa ataatagcgc
     1681 aaaaaccctt tggattaccg tatttttagc tgtttataga gaaggtgcag aaactgtgct
     1741 tttttatcaa gccttgcttt ttgatactaa aacaagcact gattttggtg ctgtttttgg
     1801 cggacttgga cttggaattt taatacttat tgttttatat tttcttttaa aagcaggagc
     1861 cattcgcata cctgtaaaac aatttttcta tatcacttct tacattattt tttacatggt
     1921 ttttgttttt acaggcaaag gcatagccga actcatagaa ggaaaagtca tcattcctag
     1981 tcttatacct atgaattttg aaccgatttt atggcttgga atttatcctt actatgaaac
     2041 tttaatccct caatttatag ttttgatcat gctaattatt ggcattttaa taacaaaaca
     2101 aatttcaaaa aaaggagtaa aatcatgata aaaaaagttt tatcagtagt tgctgcagct
     2161 gcggttatta gtacaaattt atttgcaggc gaagtgccga tcggctatcc aaaagaactt
     2221 aatggcatgg aaatagccgc tgtttattta caacctattg aaatggagcc aagaggtatt
     2281 gacttagctg catctttagc agatattcac ctagaagctg acattcacgc acttaaaaac
     2341 aatccaaatg gttttccaga aggtttttgg atgccttatt taactatagc ttatgaactt
     2401 aaaaataccg acacaggtgc aattaaacgt ggaactttga tgcctatggt ggctgatgat
     2461 ggtcctcact atggtgcaaa tattgctatg gaaaaagata aaaaaggtgg ctttggcgta
     2521 ggaaattatg aacttacttt ttatatctca aatccagaaa aacaaggttt tggacgccat
     2581 gttgatgaag aaacaggtgt gggtaagtgg tttgaacctt ttaaagtaga ttataaattc
     2641 aaatacacag gcacgccaaa ataattttac gctcggattt tccgagtgtt tgaatatttt
     2701 tatttttatt tgaaaaatta aaataacaat gtttaaagag taaattatga gtatatattt
     2761 tatgcatttt cttatcagtg ttttaccgct aagtatttta atggccttta tcactcctaa
     2821 taaaaaatat atttttaaaa gttttttagt agtttttttg ggctttttat ttggatattt
     2881 tgcttttttt atcgcagcac aatttttaaa aaccgaaaat ttaatcttta attttgattt
     2941 tgtttttata ggtttattgc tagtaagctt tatattttat ttttggaaaa aaattgaaat
     3001 tttaaatttt attttattgg gaattttaag tttttgcacc gctttgcatt attatttttt
     3061 aagtcaagat ttccctattt ttactagctc tttaatcgat agcgaaggta taagttcttt
     3121 aggttttatt gctttagcct tgcttgtttg tattttgatt ttcttctttt taaaatggca
     3181 aaaaaatttt aatcaaaaaa caagctttat gctgttttta ctgcttatcc ttatagaaag
     3241 cgataaagct ctagccaata tcttgcttac tttaatgcga aattccatca tagaaactca
     3301 tgcttttttg gtgagttttg taggaaaaag taattatttt ggtgtttttg gaatttatgt
     3361 ttatttaatt ttcatcactt ttttagcatt cttaagctta aaaattcgca aaaaaaatat
     3421 aagcaaaaaa caaattttag atataaatta tcgcaaaaac gaagctaaaa caagtcttat
     3481 taatcgctat ttttccagtg tttttatctc ctgtgttata agtttttgca ttgttttata
     3541 cttttttatg gtaagctcta agcctttaac catagatgag cctaaagaaa ttttacccga
     3601 taagaatggc aaatttatct ttgatatagc tcttttaagg gacaacaaac tccaccgctt
     3661 tgcttatatc agtgctgaag gcaaagtgat aaggtttttt cttatcaaca aaagagaaga
     3721 taaggattct cctgtagctg tttttgatgc ttgtatgatt tgtggagata tgggctatat
     3781 caaaaaagat ggacaactca tttgcatttc ttgcaatgtg cgtattttct tgccaagtgt
     3841 aggtaaaagc gggggttgca atcctatccc actcaaatac gaatacgatg gtaaaaaaat
     3901 caccatagat gttaaagatg taatagcagg atctaattat tttagtcaaa tcaaagaaat
     3961 tgaagtgcaa gatcctgtat caaaaacaaa ggttataaac acccaagctc ctttttctta
     4021 tagctataaa gggattactt attatttttc aaatcaaaac aactatgaag aatttaaaaa
     4081 agatcctaca aaatatgtag aagaaaacga agcccaattt ttaatccaaa ggagaaatga
     4141 tgttggctaa aatgattttt aactctatat ttaaaaacaa aattcaaaaa tttttagcct
     4201 ttcttacttg ttttttagcc acgcttttgc tctctactat gctaaatatt accctaagta
     4261 taggtgatga agtaactaaa caactcaaaa gctatggctc taatatcctt gttttaccca
     4321 aaggctcaag ccttagtata gaaataggta atgaacttta tgaaccctta aaaaacaaaa
     4381 actacctaga agaaaaaaat ttatatatga ttaaagacat ttattggcgt aacaacatca
     4441 ccgcacttgc tccttttttg gaaggtaaaa tcacaattga aaactcccaa caaaaagcac
     4501 ttatttatgg tacttatttt caaaaagcca taaaaattaa agatgatgat gattttatca
     4561 caggtataaa aagtctttat ccttatttag cagtgcaagg agaatgggta aaagatgata
     4621 gcaatgaaat catgctagac gaagactttg ctaaaaacaa taaattaaaa ttaggagata
     4681 ctatcaaact cataggagaa aacaatcaaa gcaaagaagc aaaaatcgta ggcattttac
     4741 ttcatgccaa tcctaaaatg tcaaataaaa tcatcgctcc tttaaattta gctcaagatt
     4801 tactcaacaa acaagggctt tactcaagtg cagaagtaag agcttttacc atacctgaat
     4861 cagccctttc tgaaaaagta cgtcgcatgg gagaagaaaa attagatcag ttagaatatg
     4921 acaaatggta ttgctcagct tatgtaggct caatcgctag tcaaattagc gatggcttac
     4981 caggtgctgg tgcaaaagct ctaaatgcta taagcgatgc tcaaagcttg gtggttaaaa
     5041 agatccaatc cttaatgggc attacttgca ttatttgtct tattgttgca agcattgcga
     5101 tttcaagtct aatgagttct gaaattcatc gcagaaagaa agaaatagga cttttaaaag
     5161 tacttggtgc taatactttt caaatttatc tcatctttgc tagtgaaaat ttaatcgtag
     5221 ctttatttgc tgctttattt ggctttattt ttggcacagc actttctcaa atcatcagtc
     5281 ttagtatttt tggatatttt attgatatag cctttatagc tttaccttta agctttattt
     5341 ttgcaggact tattgcctta cttggttgct tgcttcctat aaaaaatatc acacaacttt
     5401 cagctgcagg agtgctttat ggtagataag tttttcctca atgagctttt taaaagcatt
     5461 agcttttctt atcaaagact ttttattata gttttaagtg tttttatagg agcacttact
     5521 tgctcagctt ttttaaatat ttattttgat atcgacatca aactttctaa agaattaaaa
     5581 gcttatggag caaatgtaat gataagtccc aagcaggatg aaaattttat ctccaatatt
     5641 gagtatgaaa aaataaaaga aaatttaaag gctagagctt taactccttt tttgtatgat
     5701 tttttaaatt taggcagtac aagcggggtg gttttaggca ctgattttag ggctttaaaa
     5761 atcactaaac cttttttaga agttaaagaa ggaagctttt ctctaaatga ttttgatgaa
     5821 aattcagcct ttttaggagt taatttagcc aagcaactag gcctaaaagc aggcaatgaa
     5881 cttcaaattt ataatccaag caacggaaaa aacacaaaac ttaccataaa aggcatactt
     5941 tcaagcaatg atgaatttga tagcattgtt ttagctcctt taagcgtggt gcaaaattta
     6001 agcgatagag ccggtattaa ctatgctaat gctgtagttt atggaaattt tgatgaagtt
     6061 aaagtcaaaa cacaagcaat cagcaatgaa ttcatcgatg caaaacctat atcttcagta
     6121 tccttaagtg aaggtttagt gcttagaaaa atcaaagctt taatgttttt aatcatactt
     6181 gtagtattga tcatagttac tactagcgtt aatacaactt taagctctat tatattttct
     6241 cgcaaaaaag aaatcgcact gcgtttagcc ttgggtgcga aaaaaagtga aatttttaaa
     6301 ctttttgcta gtgaatgctt tatagtaagt ttttttgcta gtttaatcgg agctttttgt
     6361 ggaatatttt tagccaatgt ctttggttat ttgattttta attctagtat tgattttaga
     6421 tttatagctg tttttatagc cttaatcatt tctttgattt ttgccttttt ggctgcattt
     6481 tttcctataa aaagagcatt aaaaatcaat gtgtgtgaaa atttgaaagg tgaatgatga
     6541 aaaaagaact tattaaaata aacaatttaa ataaagaatt tggcaaagtt aaagccttaa
     6601 acaatatcaa cttaagcgtc tatgaaggag aatggcttgc catcatgggt ccatcgggaa
     6661 gtggaaaatc aacgctttta aacatactat cactcatgga tactccaagc tctggagagt
     6721 atatcttgga taatgaaaac ctagagcaaa tggatgaaga gcaaaaaatc accttgcgtc
     6781 gtgaaaaaat aggacttgtc tttcaacaat ttcatcttat cccctatctt aacgctttag
     6841 aaaatgttat gctctctcag tactatcact caagtgtaga tgaagaagat gccaaaatgg
     6901 ttcttgaaaa agtaggactt tcacatagac tcactcattt acctagccaa ttaagtggcg
     6961 gagaacaaca aagagtttgc atagcaagag ctttgatcaa caacccagag cttttgctcg
     7021 cagatgaacc cacaggaaat ttagatgaag ctaatgaaca aatcgttctt caaaccttgc
     7081 aaaaattaaa aaatgaaggc aaaaccatag ttttaatcac acacaatcct gatttagcca
     7141 aattcgcaga tcgaaccctt atcttacaac atggggtgtt aaaatgaaaa aaagcctttt
     7201 aatcttaagc attttgttct tgctcaatgc ttgttctttt gaaaattcaa aagatactgg
     7261 aaaagttgga gaaaaaagcg ctgaaatttc agctaaagat accttaggaa aagctgtaaa
     7321 acttgctgat gataatacaa gtttaaaagt cttagtcttt tttcaaaatg gctgcccttc
     7381 ttgcttaaaa gaactccctt ctttagatga attcatacaa aatcacccca ataaaatcag
     7441 cgtttatgct ataaattcca tcgataatgc caatgtggtt aaggttttag ccgaacaatt
     7501 tgactttaaa aatgtaaaag ttttaaaaga cgatcttaaa atcaccaatg atcgttacgc
     7561 tgtgtttgca acccctacta ccatcatcat taaagatgga atgataaaag atagaatttt
     7621 aggagaaaaa ccatgggaat ttttcgaatc caagcttact tctttgcttt aattatagct
     7681 ttattttttg tagcttgtga tagtggagaa aattttaaag ctttaaatag tgataaaacc
     7741 tataattttg cctacaatgg ttttgaaaaa agcctaaaac taaatgataa agcacaaaat
     7801 tttgccttcg tattcttcac aaaagattgc ggagtttgta aagaacaaat tcctatttta
     7861 cagaatttgg ctaaaaatta tgattttaat atctttgtgg ttttaggcga tgcaaatgat
     7921 gcaaacgatg caaaagcttg ggctgatgaa aaaggtttat ctaatttagc aatgttttat
     7981 gaaaaaagag cagctaaata cctttcaagt gccattgggg aaatatatgg agtacctgtg
     8041 cttagttttt tcaaagaagg aaaaatggat gaaaaattca taggcttaac tccttatagc
     8101 atacttgaaa aagaaatcaa aaaagtaaaa agctaaaatt tactttaaag ctttttatct
     8161 cctataaaat atccataaag ctcatagctt ccatcttttt tcatcaaaat tacaggatat
     8221 ttttcactat aaccttgttc cattcctggg cttccttgtg gcatgtcagg agctgaaatt
     8281 cctataacat ctttaggttt gttttcaagc aaccatacta tggcactttc aggaacatgc
     8341 ccttcaatag catagccttc gatcacaccc gtatggcaac tttgatactc atcttttata
     8401 cccatttttt ctttgatttt aagaaaatca ttggttttat gaacactaac cccataaccc
     8461 ttagctttca tataatcagc ccaaagatca caacagccac aagtaggact ttcataaact
     8521 tgtatttcct tagcttgcgt aagagtgagt aaaaaaagaa tggttaaaat tgtttttttc
     8581 at
//
LOCUS       DARGEM010000070         8482 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.070, whole genome shotgun sequence.
ACCESSION   DARGEM010000070 DARGEM010000000
VERSION     DARGEM010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.070"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            19..1116
                     /locus_tag="SFZ78_001193"
     CDS             19..1116
                     /locus_tag="SFZ78_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG8212061.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1211..1783
                     /locus_tag="SFZ78_001194"
     CDS             1211..1783
                     /locus_tag="SFZ78_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212062.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1799..2365)
                     /gene="rsmG"
                     /locus_tag="SFZ78_001195"
     CDS             complement(1799..2365)
                     /gene="rsmG"
                     /locus_tag="SFZ78_001195"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG8212063.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDHEIFENNLRRYCILK"
     gene            complement(2366..2926)
                     /gene="ribA"
                     /locus_tag="SFZ78_001196"
     CDS             complement(2366..2926)
                     /gene="ribA"
                     /locus_tag="SFZ78_001196"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG8212064.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            2984..3967
                     /gene="hemB"
                     /locus_tag="SFZ78_001197"
     CDS             2984..3967
                     /gene="hemB"
                     /locus_tag="SFZ78_001197"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG8212065.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            3964..4884
                     /gene="argF"
                     /locus_tag="SFZ78_001198"
     CDS             3964..4884
                     /gene="argF"
                     /locus_tag="SFZ78_001198"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8212066.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            4881..5372
                     /locus_tag="SFZ78_001199"
     CDS             4881..5372
                     /locus_tag="SFZ78_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG8212067.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRAIFKMKQSENENEKCL
                     VLENGSFNSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5359..6714
                     /gene="hemN"
                     /locus_tag="SFZ78_001200"
     CDS             5359..6714
                     /gene="hemN"
                     /locus_tag="SFZ78_001200"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG8212068.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCENFLSKNG
                     YKMIGMDHFAKEDDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVVLSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6716..7981
                     /locus_tag="SFZ78_001201"
     CDS             6716..7981
                     /locus_tag="SFZ78_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8212069.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            7978..>8482
                     /locus_tag="SFZ78_001202"
     CDS             7978..>8482
                     /locus_tag="SFZ78_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212070.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKI"
BASE COUNT         2954 a         1015 c         1584 g         2929 t
ORIGIN      
        1 ttacaaaaag gaaaataaat gaaaacaagt tttttagcac atagcgtggc tatagtgcga
       61 tcaaatttta agggtttgct ttttactgct tgtatagtga tttttgctat gtatctttct
      121 agtgttcaaa gtatcaaaga taccactcat ttagcagcga ctgcttttgc tattatcata
      181 ggagtgttgc tttctccttg gttttttaaa taccaacatc attttcaagc cggagtccat
      241 tttagtgcga aaaaactttt aagacttggc attgttttat atggttttaa tatcacttta
      301 actgagcttt taagcgtagg attgaaagga tttttgcttt ctgctatagt gatatttttt
      361 gtttttatta ttgctttatt tgtgggaacg aaaattttta aactcgataa agaaacttct
      421 atgcttgttg gagctggaag tgcgatttgc ggtgcggcag cggttttagc actagagtca
      481 agtttgaaaa gtgatccttt taagggaatt ttagctgtag gtacggtggt gatttttgga
      541 cttgtattta tgttcttata tcccatagct ttttctttaa atctttttcc tttttttgat
      601 caaaatgcta tgggtgtttt tatgggagct acgttgcatg aggtggcaaa tgtcgcaggt
      661 gctgctgaaa tggcaaagga tatggcagga tttgagcaag gtgcttctaa tgttgcagtg
      721 attataaaaa tgatgagagt gattttactt gtgccttttt tgcttatagt gacttatttt
      781 ttcgctaaaa atcaacattc aagtagtgga aaaactgcaa aaagtatcac tataccttat
      841 tttgcttttg catttttagg catgatagtt ttaaatactt atttagcaag caaagaaagt
      901 attttaggta ttgctacgag tgatatcatc tctttaggta aaacactttg tactttatgt
      961 atcgtttttg ctatggcagc tttaggcttg caaattgact ttaaaaaatt tttaaaaagt
     1021 ggctctaggg tatttggctt ggcttttgtt ttagggcttg ttttgatttt tggaggatat
     1081 tttttaacct tagcttttaa aggtatactt tggtaataaa aattattttt tattttagaa
     1141 aattttattt tattaatcaa ctaagaatat aatttaattc attaattaaa tttattaaaa
     1201 aggaataaag atgaaaaaaa ttcttgtaag tgttttaagt tcttgcttgt tagcttcggc
     1261 tttaagtgct gtatctttta aagaagatag tttaaaggtt tcttttgaag gatataaaac
     1321 taaagatatg ataggaacaa aaggtgaatt taaaaatgta gaatataaat tttctaaaaa
     1381 tataaaggat ttggcaagtt atcttaaagg cgctaaagct accataaagc caagcaatgc
     1441 ttttatgggt gaaggcaatg atattataac caataatatc acaaaagtat ttttccctgc
     1501 tttattggga gatacggata ttaaagttgt ttttcaagat gtgattgcgg gtgaaaataa
     1561 aggcgttatt tcagcaaaaa ttactatgga taaaaaaagt actattgtac ctttaactta
     1621 taccatcaaa gataataaat ttgaagctaa aggacaactt gatttgcata cttttaaaaa
     1681 tggttctaaa gcattaaaag cattaagcga tgttgctgca ggacatggtg gaatttcttg
     1741 gcctttagtg gatatcagtt ttaatgctga tttagcagaa taaaaagtag ccttagggct
     1801 actttaaaat acaatatctt cttaaattat tttcaaaaat ttcatgatct tttatatttt
     1861 caagttcttg ataaatttca ctacctttcc ataaaataaa aactgtattt tcatctttta
     1921 gatttttgca aatttcaagc aaaggcttga catccattaa ggctcttgaa gtgatgatat
     1981 cagctttaaa ggtattcttg tattcttgaa ctttttcttt gtaaatatgt aaatttggaa
     2041 gttcacattc tatttttaat gtccgcaaaa aggcagcttt tttgggattg ggttcgaaaa
     2101 gatgaaaatt gctttgcagt aaaaaagcta aaaatacagc tggaaatcct gcgccacttc
     2161 ctatatcggc aatatttttt gctttagaaa aatcataaaa atctaaaatt ttaatactat
     2221 caaagatatt ttcatctata ttttttaaat gagtaagatt gtgaatgcgg ttaaatttag
     2281 ataataattc tttataaatt tttacctttt cttcaaagtt ttttaaatcg tagttttgca
     2341 aaaaatcata atctttaaaa atcatttatt taagatgtcc catttgagtt tgttttatgt
     2401 ttaaatactc tacattaaaa cgattaggtt ctattaaaat cggtatgcgt gtgatgattt
     2461 tttctttgat agaatctagc ttttcagggt tatttgtgag taaattaacc ttagaaattt
     2521 catagtgttt gagtataaat tctacaattt cataagttct ctcatcggct ttaaagccaa
     2581 gctgatgatt tgctttaatc gtatcaaaac ctttatcttg taaagcataa gcattaacct
     2641 tgttaaaaag ccctataccc cttccttctt gcctaagata aatcaccatt ccgccattct
     2701 tttctatata ttttagtgaa aattcaagct gttccccaca atcacacttt aaacttccta
     2761 aagcatctcc tgttaagcac tctgaatgaa ttcttagatt gagtgtgtct tttggagtat
     2821 ttttaaatat acataaatgt tctttatcat tttctttgaa actttgtatt tggaaatttc
     2881 cccatttgct aggtaaattc gcaatttctg aaatttttat tttcatttac tactctctat
     2941 aatcaaattt atgttaagat tttagcaaaa aaaggacaaa aaaatgttta aaagatttag
     3001 aagattaagg cttaatgaaa acttaagagc catggtaaga gaaaattctt taagtgtaaa
     3061 tgatttgatt tatccgcttt ttgtggttaa tggaacgggg ataaaaaaag aaatttcttc
     3121 tatgcctgat gtgtttcaaa tgagtttaga tgaaatttta aaagagtgtc aaaatgtagt
     3181 taatttaggc attaaagcca ttatactttt tggcgttttg gaaaatgaga aaaaagacag
     3241 ctgtggaagc gatgctttag atgatgaagg gcttgttgca agaagtataa gagagattaa
     3301 gaaaaatttt ccagatcttt ttataatcag tgatctttgt ttttgtgaat acacagatca
     3361 cgggcattgt gggattatcg atccaaaaac aaaaagtgtg gataatgatg tcactttaga
     3421 aatttcagcc aaacaagcct tagttcacgc aagagcaggg gtagatatga tagcacctag
     3481 tggaatgatg gatggtatta tcactacttt gcgcaaagct ttagataaag aaggttttga
     3541 aaatttgcct ataatggcgt attctactaa atttgcttca agttattatg ggccatttcg
     3601 agatgtagca gaatcagctc caagttatgg agatagaaaa agctatcaaa tggattttgc
     3661 taatggtaaa gaagctttag aagaaagctt ggaagatgaa gcacaaggag ctgatatttt
     3721 gatggtaaaa cccgctcttg cttatcttga tgtggttaaa gaaatatccc ttcattctaa
     3781 cttgcctttg tgtgtttata atgtaagcgg agagtatgct atgttaaagg cagctaaaaa
     3841 tgcaggagtg attgattatg aaaaagtttt gtatgaaact atgatagctt ttaaaagagc
     3901 aggggcaaag cttatcatca cttatcatgc caaagaatta gctaaaatgt taaaaggaga
     3961 aaaatgaaac attttttaac tttaagagat ttttctaagg aggaaatttt aagccttgta
     4021 aatcatgcta gcgagttaaa aaaagagcct aaaaaacttt tacaagataa aactttagca
     4081 atgatttttg aaaaaaactc tacaagaaca agaatggcct ttgaattagc cataacagag
     4141 cttggcggaa aggctttatt tttaagtagc aatgatttac aacttagtcg tggcgagcct
     4201 gtaaaggata cagctagggt ggtaggggcg atggttgatt ttgtgatgat gagagtcaat
     4261 aaacatgaaa ctttactcga atttgcaaga tattctaaag cccctgtgat caatgcttta
     4321 agcgagcttt atcaccctac tcaggtttta ggagatttgc ttactatcaa agaatggaat
     4381 aagatgcaaa atggtatagc aaaagttgct tttatcggag atagtaacaa tatgtgcaat
     4441 tcttggctta ttgcggctgc gattttgggc tttgaattta gtatagctat accaaaaaac
     4501 tataaaatta gccctgaaat ttgggaattt gctatgaaac aggctttgat ttcaggagct
     4561 aaaatttcct taagtcatga taaatttgaa gccttaaagg ataaagatgt agtcattacc
     4621 gatacttggg tttctatggg tgaagagaat gaaaaagaac gcaagattaa agaatttgaa
     4681 ggatttatga ttgatgaaaa ggctatgagc gttgccaata aagacgcgat attgcttcat
     4741 tgtttgcctg cttatagggg ttatgaagtg agtgaagaaa tttttgaaaa acatgcagat
     4801 gtgatttttg aagaagcaag aaatcgcctt tatgtggtaa aagccttgct ttgctttttg
     4861 gataatcaga gaggaagaga atgaaagagc tagaaaagta tagcacttgc ttaaaacgca
     4921 ttgatgaatt tagtcaaaat ctaggaataa agaaaaaaga tagagcgatt tttaaaatga
     4981 agcaaagcga gaatgaaaac gaaaaatgtt tagttcttga aaatggaagt tttaattctc
     5041 ctgagccttg gtttgtgata gatgaaaacg atgaaattca cactttgctt tctttacaaa
     5101 gtcttaagaa tatacttgaa agtttaaaac aaagtcaaaa agagaatttt gaattgcgtt
     5161 tagaaaaggc gatttatcaa caaattcctg tagattttaa cgatgtttgg acggttgcta
     5221 tggatgagat caagcaaaag gcacaaaatg gtactatgga agttagtatt gatcttgaaa
     5281 aattaatttc taaaatcaaa caagagcatc caaatttatt tgtagatatg caagcgatga
     5341 tagaaagggt aaaccaaaat gagagattat aaagcttttg taaaatactc taaagcagga
     5401 ccacgctata cttcttatcc tacagcagta gagtttaata caaatttcaa atacgaagaa
     5461 tatatagaaa ttttaaaaaa acaagataga tctttatcgc tttattttca tttaccattt
     5521 tgtaggagtg cctgttattt ttgtggttgc aatgttattt atactgcaaa agaagagagt
     5581 aaagaaaggt atttaactta tatttttaaa gagcttgata ttttaagtac tattttagat
     5641 actaaaagag aagtggtgca aatgcacttt ggtggcggaa ctccaacttt ttttagcgct
     5701 aaacaacttc aaagtttgat tttaaaaatc agatctgttt ttggaaattt ttctaaagat
     5761 gcagagatta gctgtgagat cgatccgcgt tttttaaatg aggaacaagc catagtttta
     5821 acgcaaaatg gctttaatcg tattagcttt ggagtgcagg attttgatga aaaagttcaa
     5881 aaagaaattc atcgcatcca gtcttttgaa ttaacacaaa atgctttaaa tcttgtaaga
     5941 agcaaaggga taaagtctgt aaatatggat ttaatttatg gtttgcctta tcaaaattta
     6001 caaagcttta cacaaacttt agaaaaagtt atgcttttaa accctgatcg tttggcgatt
     6061 tttaattacg ctcatgtgcc ttggcttaag aaaaatatga gaaaatttga tgaaaatacc
     6121 ctgccaagtc ctgatgttaa acttgaaatt ttagaatttt gtgagaattt tttgagtaaa
     6181 aacggctata aaatgatagg aatggatcat tttgcaaaag aagatgatga gctttttaaa
     6241 gctttagaaa atggaacttt acatagaaat ttccaaggtt ataccaccaa aggcggtgct
     6301 gatttagtcg gtgttgggct tacaagtata ggtgaaggac aaagacatta tgcacaaaat
     6361 ttcaaagata tgtcaagtta tgaagctgca ttagatagag gagttttgcc ttttgaaaga
     6421 ggtgtagttt taagcgatga tgatgagctt agaaaagcag ttattatgga gttaatggca
     6481 aattttaagc ttgatattaa gtcaatagaa aaagaatttt gcattgattt tcaggagtat
     6541 tttaaagagg atttaaaagc tttggaagaa tacaaagatt ttattaattt tgatgaaaat
     6601 tttatcaaag tcaatgaaac aggcgttttg cttataagaa atattgctat gtgttttgat
     6661 gcttatatga aaaacattag tgaagataaa aaagtattct caaaaacggt gtaagatgaa
     6721 atttagtcaa ataagtgatg cttgtgttaa atgtggcaaa tgtatacctg tttgtactat
     6781 acatgaagaa aatcgcgatg aaattactag tccaagagga tttttagatc ttttagctgc
     6841 ttataaagag ggaagtctag agcttgataa agaagctaag aaagtttttg aatcttgttt
     6901 tttatgcacc aattgtgttg aagtatgtcc aagtaaatta agagtagata atgccataga
     6961 agaagttcgt tatgatatag ctaaaaaatt tggtatagct tggtataaaa aacttatttt
     7021 tttctttcta agaagacgca aaattttaga tttggtagct aagcttggct atgtgtttca
     7081 aagttgtgcg tttaaaattc aaaatgagaa tgaaaataca ggtatgaagg caagattttc
     7141 catgcctttt gttaaaaagg gaagattgct tacaagtttt aataaaaaaa gtttcttaaa
     7201 ttctaatcca aaatttatca ataatgatgg agaaaaaaca ataggttttt ttgtaggttg
     7261 tttggcgaat tatttttaca tagatacggc taatgcagtg cttaaaatcg ctaaggaatt
     7321 aaaaatcaat gtggatttga tgaaagaaca agtgtgttgt ggagcgccgc aattttttac
     7381 gggtgatttt aaaagtgttg aagttttggc taaaaaaaat attgagtatt ttgaaaaaaa
     7441 attagaaaaa ttagatgcta ttatagttcc tgaggccact tgttcggcta tgttaaagat
     7501 agattatgaa cattttttta taatgcaaaa tgatttagac tgggcaaaac gcgcaaaatg
     7561 tgtgtcatct aagatatata tggctagcga gtatttttat aaatttactt ctttagaaga
     7621 aattttaaaa acaaaaaata aaattaatta tagcattact tatcacgatc cttgccatgc
     7681 aagaaaaatg caaggggttt ttaaagagcc aagagaactt ttaaaaacaa attatcattt
     7741 tgtagaaatg agtaattcta atacttgttg cggttttggc ggggtgggta tgcaaacgga
     7801 ttattatgat agagccttaa gtgtagggct taaaaaagca caaatgatcg atgaaagtaa
     7861 ggctagtgtg gtaagtgccg agtgttcagc ttgcagaatg caaatttcaa atgcattaga
     7921 acaaaattca agcaaggttg tttttgctag tcctttagaa cttatagcaa aagctttgtg
     7981 atgatgaaga tagtatttaa aggcaaaagt tctgaatatg aaattcaaag atcgtgcttt
     8041 tgtgttgatg cttttgtgat taaagataag attgaagaac gagatggtgt tgattttatc
     8101 acttcaaatg tagatctttt ggaatttagt gatgacagtt ttacttttga agaaattgta
     8161 aaacatttta atatttgtga tagtgaagat atgattatcg ttgaagattt tgacatgaaa
     8221 tcaaacaaag ataatcaaaa ccaagaagat gatatagaac acaacatctt aaaatccgaa
     8281 aaaataatac atgaaaacac aaaacaaaca agtatgcaat ttaaaaattt aaaatttttt
     8341 tcaagaattt ttaaaaatga aaattttctt tctgatttta aagaaagtaa gcaagaagtt
     8401 gttactatca aaaaacatga aaaacttgaa atttttaaaa atttatctca agaagatcaa
     8461 gaaattagct ttgttaaaat tg
//
LOCUS       DARGEM010000071         8466 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.071, whole genome shotgun sequence.
ACCESSION   DARGEM010000071 DARGEM010000000
VERSION     DARGEM010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8466
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.071"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            90..845
                     /locus_tag="SFZ78_001203"
     CDS             90..845
                     /locus_tag="SFZ78_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8212071.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(869..1507)
                     /locus_tag="SFZ78_001204"
     CDS             complement(869..1507)
                     /locus_tag="SFZ78_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG8212072.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1504..2493)
                     /locus_tag="SFZ78_001205"
     CDS             complement(1504..2493)
                     /locus_tag="SFZ78_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8212073.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2497..3276)
                     /locus_tag="SFZ78_001206"
     CDS             complement(2497..3276)
                     /locus_tag="SFZ78_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212074.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3277..4116)
                     /locus_tag="SFZ78_001207"
     CDS             complement(3277..4116)
                     /locus_tag="SFZ78_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212075.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4113..4922)
                     /locus_tag="SFZ78_001208"
     CDS             complement(4113..4922)
                     /locus_tag="SFZ78_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEG8212076.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSEIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4919..6244)
                     /locus_tag="SFZ78_001209"
     CDS             complement(4919..6244)
                     /locus_tag="SFZ78_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG8212077.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYISKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVIENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6255..7301)
                     /locus_tag="SFZ78_001210"
     CDS             complement(6255..7301)
                     /locus_tag="SFZ78_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG8212078.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITLGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7418..8401
                     /gene="corA"
                     /locus_tag="SFZ78_001211"
     CDS             7418..8401
                     /gene="corA"
                     /locus_tag="SFZ78_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG8212079.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
BASE COUNT         3084 a         1438 c         1106 g         2838 t
ORIGIN      
        1 tataactttt ctaaaaattg atccagactt aattaaatat aaatttaaaa taagtataat
       61 tttaaaacat tttatatcaa aggaaaaaaa tgaaaaaaat attaagcatt gctctagttg
      121 ctttagttgg tttattttta ggtgcttgta gtgattctaa aaataaagaa tcaaatgcaa
      181 gtgtagaatt aaaggttgga actgctccaa attataaacc ttttaattat aaagaaaact
      241 caaaacttac aggttttgat actgatttgg ttgaagagat tgccaaaaaa aatggtatta
      301 aaattgtttg ggttgaaacc aatttcgatg gattgattcc tgctttaaaa gctggcaaaa
      361 tcgatatgat tgcctcagct atgagcgcaa ctgatgaaag aagacaaagt gttgatttta
      421 ccaaacctta ctatatgagt aaaaatcttt atcttaagct aaaaaacaac gactctcttc
      481 aaacaaaaaa tgatttagaa ggcaaaaaaa taggagttca attaggaact ttacaagaaa
      541 atactgcaaa agctatcaaa aatgcacaag tacaaagcaa taaagattta aacatagctg
      601 ttttagcact aaaaaacaac aaaatcgatg ctattgtagc tgatcaagat actgctaaag
      661 gttttttagc tgaaaatcca gaattggtaa gtttctacca agaaacagat ggaggagaag
      721 gctttagttt tgcttttgat aaaaataaac aaaaagatat tattgaaata tttaacaaag
      781 gcatagatga agcaaaaact gatggatttt atgatacttt aattaaaaaa tatgaattag
      841 aataagcgtg aattttcacg cttatagctt aaaaagttaa aatttcatat tttctctctt
      901 ttgcaatttt taaaattttt tcatcgccat tacatacaaa ggctttgcta acagactcta
      961 gtaaaggtaa atcattgata gaatcactaa aaaaataaga atctttcatc catttttcat
     1021 aatctttacc caaatattcc ttaagtctta aaaccttgcc ttccttaaag ctataaatcc
     1081 cgtaagcttt tccactaaat ttatcaccca cacgctcaca ttttatggct atgctttctc
     1141 tcactcccaa aaaagaggcg atttttctaa ctaaaaattc agccgtagct gaaattataa
     1201 tacacctttg atcttgatat ttgattataa gttctttagc tttttcataa ggttttatat
     1261 aaatttttat aaattcatct actaaagatg aaattctatc ttcattttta cccttaacac
     1321 tttgaagaaa aaaagtcata aattcatcca tatcaagctt tttttcttga tattgttttt
     1381 gataaaaaac gattttttct aaatattctt gaggtaaaaa acctttttca acacaaaatt
     1441 taagccaaag tttagcacta tcgccttgta ttaaagtatc atctaaatca aataaaacaa
     1501 gcttcatttt aactcttttg ctaaagaaag attgaatttt aaagcgattt tatcacctgc
     1561 ttcataagta ctatgagtgc taaaatttaa agtatctacc ttaaattcaa tttcttgcac
     1621 tctaacccta tagcgtatga tattacctag caatgatttt tctttgatct tagcctctaa
     1681 gccttcgtta gaaatttcta tggtttcagg acgcaaggct atatcttttt taaaatcgtg
     1741 ttttaaaccc aagctatcaa gctctttagg gcttaaaata ttgtaatttc ctataaagct
     1801 agccacaaaa tgagattctg gcaaaagata aagattgttt gcgttggaat tttgtatgat
     1861 tttaccctca ttcattaaaa taatcctatc ggataactct aaagcttctt cttgatcgtg
     1921 cgttacaaaa atagtggtga gttcaagttc tttttgaatt tctttaattt gcacccttaa
     1981 atgcttacga attttagcat caagtgccga taaaggctca tcaagcaaaa gtaaatcagg
     2041 tttagtcacc aaagatcttg ctaaagccac tctttgcatt tgtccgcctg aaagcttatg
     2101 tggataagtt ttagcgtatt cttcaagctc gacgagtttt aacatttttt tcactctttt
     2161 ttctatgtcc tttttatcca tttttttgat ctttaaacca aaagctacat tttcaaaaac
     2221 gttaagattt ggaaaaagag cgtaattttg aaaaaccata cctatatttc ttttttgagg
     2281 acttaattta gtaagatctt tatcatttaa agaaattttt cctccattaa tttggctaag
     2341 ccctgctata caccttaaaa gagtggattt tccacagcca cttgggccca aaagggttat
     2401 aaactcaccc tttttagcac taaaattaat atcttcaaaa ataattttat ccccataagc
     2461 ttttttaaaa tttttaatct ttaaataagc cattttttac tccttaatca aactagctat
     2521 aaaagttgtt ataaaaatta acacaaaata aactattacc aaagcactag aataatgccc
     2581 actttgattt ttgatattat aaagataaac ttgcaaagtc tcataagcac ttcctacaag
     2641 aatatttgcg tataaaaatt cgcctattaa aaaagaaaaa cttaaaaaaa ctgccaccaa
     2701 aattccattt cttaaattag gcaagacaag cttaaaaatc gctcccatta aagaacctcc
     2761 aagcatagca ttagatgcga tgagttcatt taaattgaca ttagacatag cattatctaa
     2821 agccctatat ataaaaggca aagctatagt aaaataagta aaaatgagta tccaagctgt
     2881 gcctcctata ttgtcagcat aaagttgcaa aagccccaca cagctaacta taggaggtac
     2941 agcaaaaggc atgataataa gtatatttac aaaggctttt aattttaaaa aataataatt
     3001 tagcacaaaa accaaaggaa aaacaagaat cacagaaagt aaaatactgc ccacacaaac
     3061 aagcaaagaa tgccaaagag caagtaaaaa tctttcgtca tgaaaaagtt cttgatacca
     3121 tttaagcgta agatcatcag gcaaaacact tacaccccaa gaagtggaaa tagaatataa
     3181 aaaagtagcc attaaaggca aagctaaaaa caaaaaaacc aaaaacaaaa ctgcataatg
     3241 ataaatttta gcttttaaac tcaaattttc attcatttaa agcaccttaa aattatattt
     3301 tttagaaagg aaattggcta taaaggtaac aacaagcatg ataatagtta taatgatact
     3361 taaagcacta gccatataag gatcaagatt gatatcgcct gcgattaaag cagcgattct
     3421 tacaggagcg acattaaaat ttcccgaact taaagcataa atagtcgcat aagctccaaa
     3481 agcattggca aataaaatca caaaaacacc aaacaaagca ggagcgagca aaggcaaagc
     3541 tatttttaac caatataaaa aattgcctcc acctaacatt ttacaagcat ttaaatgtga
     3601 attttcaaga cttttaaaag ctggaagcaa aagcaagatc gccaaaggaa tttgaaaata
     3661 cacataaaca atatttaccc cgaaattagc ataaacacta acaaaaggct ctatacctaa
     3721 attcttcaaa aacacattaa ctacaccatt gcttccaaga actataatga aagcaaaagc
     3781 taaaggaact cctgaaaaat tacttatcat ggtatttaaa gaaaaaagaa atttacatat
     3841 ttttgatgga gctaaaacaa ataaagaata gctcgccaaa agccctatta aaagtccaaa
     3901 aatactagaa ataaaactga tttgtaaaga atttataatg ctttgtagat agaatttgga
     3961 ctcaaaaata tgtataaaat tggctaaaga ataaatttca tcctcttcta cataaaaagc
     4021 attaaaaaca atccaaatca aaggtgctat cataaaaaaa gtaaaaacta taaaaaaagg
     4081 taaaatactt aaaaaggcta gaaatttttc tttcattttt tggcctttaa aatttcatca
     4141 ttatatctct tatcgtgttt aagtcctaaa atttcacaga tactgccaca aatttcatcc
     4201 tgttttatct tggcattttc atacgaaaaa gcactaccaa aagtgaaaaa aggcactaaa
     4261 atttcatctt cacttaagcc tccatgactt ttaccctctg tcataccatg atcgcttgtg
     4321 atgattacat taataccttg ttctaaccaa gtaggcaaat actcagaaat caaaatatca
     4381 acttttttgg ttttattagc atactcaata gagtgtgagc caaatttatg tcctgcatca
     4441 tctatattca tagaatgtat aagagtaaaa tctagattat atttgtttct taaatgctcc
     4501 ccatctgcaa ataaatgaga atctaaataa tcatcttcat aataaaaatg tccataaggc
     4561 aaagttaaat tttcatcttc tatgtggcga tgtaaagaag gaataaattc ttttttatta
     4621 taaagctcaa aaacccaatg ataagctgcg cctccagctt ttaagccttg ttctttgcaa
     4681 aggtcaaaaa tgcttgtttg ttttgaaaaa ctcaatttat tattaattat ctcacttaaa
     4741 acaggcttta cgcctgttaa taagcactcg tataaaggac gagacatact aggaagttcg
     4801 cattctaaag aataaaattt gcctaaattc tctttgcaaa gcgcatttaa atatcccata
     4861 tttatactag cacttttgca atttaagcca tcaagcacaa ctaaaataac tttggacatc
     4921 atttactctt taaaaaatct tttacttcaa gcaaaataaa ctcattatca tcagtcttat
     4981 taggttctct acttgaagaa taaggaaagt tattgtcatt ttctataact atatgagagt
     5041 catctactat atccacacct tctatggttt caaaaggaaa aacaaattta tcatttacca
     5101 aaggcttttt agaaatttta tttctatcct taatatttaa aagatctata taagaaattt
     5161 tttgagcttc atgagtttta tcatctaatt taaccttata aattctttta aattgagcta
     5221 cattattaaa acaatgctta gtatcttcac cttctttgca agccttatct ttagtgcctt
     5281 ctttttgatc tctttctatg atgatgccgt atttatcatc tatcatgtta aaatcaccta
     5341 tggaatggct tttatcttct aagaaatatt tataagtttt tccagtgaat tttttatttt
     5401 ttacatcaaa ttctatgatt cttagatatt ctttaccttt ttcattctca taagcgttgt
     5461 tattataaat gcttccttct aaaagcaaat aaagtttaga accatcttta gagcttgcca
     5521 tagcttcaaa gcctttagaa cgcttgatat taaatttctc attttctcca tcaggcttat
     5581 cgctaaattt taaacttgga ttatcaggag aaataagttt tttaccctcc acatacacat
     5641 caaaaacttc tttcaaattc ccattcttat caaaatgaag caaataagga ccaaattcat
     5701 cacctatata aaattcatca ttgataacct gtatactctc agtatcaaaa tcagccccac
     5761 ttaaatacct ttctttagtt gtttcggtgg ttataggata ggggtatttt ttatcactat
     5821 ctttaaaaaa aactgttttt aaaagttcgt attttgagtt tttaaaatca aatttaaact
     5881 cgtgagcata aagcatagaa tcataagaat tatacttttt acccaagcca ttatcgctaa
     5941 ttacccaaaa aacatctttt tttgaaatat attttatccc actatgtcct tgtataggtt
     6001 gatttttaaa aggtaaataa aaatctgttt ccctgtttcc cttagattta aaagttccaa
     6061 ttttttcttc tctagtgata tttgcaaatt tcccataagt tttaaaaaaa tcaggagcat
     6121 ccttaggagg ttttactgta cttttagaat ctatgataat atgccctgct aaattggcct
     6181 catactcttg aactccaaat aaaacactgc aaagcatagc acttgttaaa ataacctttt
     6241 tcatccaatc tcctttattt catatccact ataacttttt cttgccaaag ttgtggtagt
     6301 tctttagcgc ttttttccca agctttttga tctttgattg ctcttgcatt tttgtattgc
     6361 tcacttggta aaagtttggc ttttatatca tctggcaagg taatatgatc aattcttatt
     6421 ggccttgcat aaccttttgc tagattgatt tgtcctttat cagaaagtat aaactcacgg
     6481 gctaatttag ctgcgtttgg atgttttgcg tatttattga taatagttgt ataacccgaa
     6541 ataacactac catcagcagg gattaaaact tcataacgat ctttgcccac tttatctcta
     6601 tagcctaaac cattaaaatc ccaaactaaa cccacttcaa cttcaccttt ttcaagattg
     6661 gctatactta catcattatt tacaagtctt ccttgtttgg ccaaagtatt aaaaaaagct
     6721 aaagcaggac ttaaatcttt ttcatcccca cctaaggcat aattagctgc caaaactgca
     6781 ctcacagctt gagccgctac acttacatca cctaaggtaa ttttataatt tcccttaagc
     6841 aaatcttgcc aagttttagg tatatctttt actacatctt tattgactat aaaagctatg
     6901 gttcctgtat aagctaaaag ccaatttcca tctttatctt tagcccaagt tggaatttga
     6961 tcccagtaac ttgtcttaaa aggctgagcc actccttgtt taaccgctat ctctccaaaa
     7021 gaagccccta catcccctat atcaccgctt gcatttttct tttcggcttt aaatttagca
     7081 atttcttgag ctgaactcat atctgtatca ctatgttcta tgccataaag atttttaaga
     7141 tctgcccaag tatccttcca gtttgcccaa gtatcaggca tagctaaaga atttacccta
     7201 ccttctgctt gcgcagcttt aatcaaattc tcatcaatag cttgtgaatt tgaaaacaat
     7261 aaagcaacaa gacctaaact taagaaaaat ttcttactca tttttttcct ttcaaaaaat
     7321 attttggaaa tttaatgagt tttagaaaca ttttagaaac aagttaattt ttaagcaaac
     7381 aaggttataa ttttaaagtc ataaacaagg agcgatcatg ctttatattt atatcaaaac
     7441 tcaaaatgct ttagttcaaa gaatcaattt taatctcgat agtcaagaac taccgcaaaa
     7501 tattttatgg attgacttac ttcatccaag tgcagcagaa attgctttta tatcaagtga
     7561 atttaatctt gagtttccta caaaagaaga aagggaagaa atagaactta gcgcaaaata
     7621 ttgggaagat aatgcgacaa taaccatcaa tgctcatttt ttagtaagag atcttaaaag
     7681 tgatgaagaa gataggaatt taatcaagct tcgcacagaa attgttactt ttgctaccgc
     7741 taaaaatatc ttatttacta taagatataa cgaatttagc acttttgaag aaattcaagc
     7801 aaggatttta gctagtccaa agaattttga agatggtttt gatattattg ataaaatgtt
     7861 tgaagtgcgc gttgaaaaag atgcagattt actagaatgg atagataaag aagcaagacg
     7921 cttaagaaca agtgttttag aaaaaaaaga tgaatatagt tatgatgaaa tgctaaagga
     7981 tatttcaagt ttacaagagc ttaatatgcg cgtaagagat tctttgtttg ataagcgtcg
     8041 cgctatgact tctttgctga aaagcgataa aatcgataaa gatataaaac aaaatctcac
     8101 tatagtttta aaagacttaa attctttggt tgaatttagt gtttcgcaac ttaatatctt
     8161 agataatatc caaaccattt tagccagcca aatcaacata gaacaaaaca aaatcattaa
     8221 aattttcacc gttgcaactg ttgccatgat gccacctact ttaataggaa ctgtttatgg
     8281 tatgaatttt aaattcatgc ccgaacttga acttcactat gcttatccca tagtgcttgg
     8341 cgtgatggta atttctatca ttttaccttt ggttgttttc aagaaaaaag gatggttata
     8401 aaaatttatt aaggagaaat aatggataca ataaacatag gaattttaac cctaagcgat
     8461 agagca
//
LOCUS       DARGEM010000072         8232 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.072, whole genome shotgun sequence.
ACCESSION   DARGEM010000072 DARGEM010000000
VERSION     DARGEM010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8232
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.072"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            82..1461
                     /gene="cetA"
                     /locus_tag="SFZ78_001212"
     CDS             82..1461
                     /gene="cetA"
                     /locus_tag="SFZ78_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG8212080.1"
                     /translation="MVKNGLLSTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            1479..1976
                     /gene="cetB"
                     /locus_tag="SFZ78_001213"
     CDS             1479..1976
                     /gene="cetB"
                     /locus_tag="SFZ78_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG8212081.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            2064..3923
                     /gene="mnmG"
                     /locus_tag="SFZ78_001214"
     CDS             2064..3923
                     /gene="mnmG"
                     /locus_tag="SFZ78_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8212082.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            3924..5210
                     /locus_tag="SFZ78_001215"
     CDS             3924..5210
                     /locus_tag="SFZ78_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8212083.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AFFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            5301..5804
                     /gene="petA"
                     /locus_tag="SFZ78_001216"
     CDS             5301..5804
                     /gene="petA"
                     /locus_tag="SFZ78_001216"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG8212084.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            5806..7056
                     /locus_tag="SFZ78_001217"
     CDS             5806..7056
                     /locus_tag="SFZ78_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG8212085.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            7053..8177
                     /locus_tag="SFZ78_001218"
     CDS             7053..8177
                     /locus_tag="SFZ78_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8212086.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
BASE COUNT         2712 a         1035 c         1552 g         2933 t
ORIGIN      
        1 cctaaaaatt aaagtaatat attattaaag tattgttttg atttatgatt tcaaaaaatt
       61 ttcaataaaa ggggtaaatt tatggtgaaa aatggattat tatcaactat ttttctaagt
      121 gttatcggtg ttttaggtgt catttttatt catatttttg ttggagcgat aatttttgtt
      181 ttaatcgctg ttttaatgat ttatttgctt agacaacaca aagatgagca aataatgata
      241 gataaacttt tggttctttg tagagagtta aaagaaggaa attttgacaa tagaattatc
      301 tatgtaaaaa caaaaagcaa aaaattagcc gaaatagcag ataatcttaa caatactatt
      361 gatgggctag aagcttactt aagggaaatt aatacttcta tttcttgttc tcaaaaaggt
      421 gaattttatc gcaaggcttt gcctgaaggt ttaaaaggaa tttttgctca taatatcgaa
      481 tttataaata aagctttagc aaacatagaa gtgacagcaa gatctacttt taaaaatgct
      541 ttatcaagaa ctttaatgga tttaagcctt ggaaatcaaa ataaagacat gtctcaaatt
      601 tctagctcat taaatcaaga tattagcatg atgaagaatg tatatgatac agtggatgcc
      661 atttctcata cagctacaga aaatggttca gaggtggatt ctcttcaaag tgctatgggt
      721 tctttaatgg atgttgtaaa ttcgagcaag gagacagtac aaacttttgt ggctaattca
      781 caaaatatca cttcagtggt tgaagtaata cgcgatatag ccgatcaaac caatcttcta
      841 gctttaaatg ctgctattga agctgcgcgt gcaggagagc atggtagggg ctttgcggtt
      901 gtggctgatg aagttagaaa gttagcagaa agaactcaaa gatctacaag cgaaatttct
      961 attgcaattc agactatgca acaagatttt gtaaatatcc aaagtggcag tgagcaagtt
     1021 tttaacattg ttagtgaatc tgaagaaaga attaataaat tttctcaagc ttttaaacgt
     1081 ctagaagaaa atagtagtgc tcttggtgtt aattttggat cctttgcaaa gagattgatt
     1141 ttgtctgtgg ttaaaatcga tcatattctt tataaatcaa atatatattt aaatttaaat
     1201 ggggctcaaa atttcaatct tgaaagtgta gatccaattt ctaatctttg tcaagatgag
     1261 agagctcaag gtgttattaa tgagcttagt tctgaaactg agttaaattt agctaaagaa
     1321 tttataaaag ataacgctaa aaaagcaata gaagaatcaa gtcaagatta tatcgatcaa
     1381 aaagcttatg atgcgattgt aaatgatatt aaatcactag agcaaagaag tgctgaaatc
     1441 ttagcaaaat taaaaatata aattaagagg gtgggaaaat gtcaagagaa atttttttac
     1501 aagaagatag tttaattact tctaaaacag atttaaaagg taaaatagtt tatgcaaatg
     1561 atgatttttt aaagtatgca ggttatacca tgggtgaagt tttaaataaa cctcataaca
     1621 tagtaagaca tgaagagatg ccaaaaactg tttttaaata tttatgggat tatatgaaag
     1681 aaggcaaaga aatttttgct tacgtaaaaa ataaaaccaa agataacaat tactattggg
     1741 tttttgcaaa tgtaacccca tcaatagatg ttaataataa tatcataggt tattattccg
     1801 ttcgtcgtat gccaaataaa agcgctattt ctacaataga aagtctttat agcgatcttt
     1861 taagagcaga acagcaacaa ggcttaaata agggtgttga gatgcttaaa aatttctgca
     1921 aagatgcaga taaaacttat aatgagctaa tcttttctct tcaagaagct aaataaattt
     1981 ttgttagact taaaacgagt ttgttttaag tctaaatatt atataatctt tcttttaaaa
     2041 attcacattt ttcaaggcaa aatatgtttg atgtcattgt tataggtggt ggacatgcag
     2101 gtgttgaagc aagtgctgct gctgctagaa tgggtaaaaa aaccttactt ttaactacat
     2161 tgattgagca aataggagcg gcaagttgta atccagccat aggtggactt gctaaagggc
     2221 atttggtaaa agaacttgat gccatgggtg gtcttatggg tgaaatcacc gatgaagcag
     2281 ggatacaatt tcgcatttta aatgaaagta agggtgtagc cgttcaagga agtagggcac
     2341 aaattgatat ggataaatac cgtatcattg cacgtaataa acttttaaaa cttccaaatt
     2401 tagaaatttc tcaagaacaa gcgagtgttt taatcgtaga aaatgatgaa gttaaaggcg
     2461 taaaaacaaa tttagaaaat atatattttg ccaaaaaagt catcctaaca acaggaactt
     2521 ttttaaatgg acttattcac gtaggtgaaa ataaacttca agcaggaagg gtaggggagc
     2581 ttgcttcggt aaatttagga aattatctgc aaactttggg tttaaaaatg ggacgtttaa
     2641 aaacaggaac ttgcccaaga gtagatgcaa aaagcattga ttttagtgtg cttgaaattc
     2701 aagatggtga tgtaaatcct aaagctttta gttttcgttc aagaaatttt aatcctactc
     2761 aacttccttg ttatattgca cgcactaata caactacaca tgagattatt aagaataatt
     2821 tttatcgtgc tccacttttt acgggacaga ttgaaggtgt ggggccaagg tattgtcctt
     2881 ctatagaaga taagatcaat cgttttagcg acaaagaaag tcatcatctt tttatagagc
     2941 ctcaaactat cgatgcgacg gagtattata ttaacggttt ttctacttct ttaccttatg
     3001 aagtacaaac tcaaatgttg cgttctgtaa aaggttttga aaatgctaaa ataacccgtt
     3061 ttggttatgc tatagaatat gattatatag agccaactga acttaagcat actttagaac
     3121 ttaaaaagat taaaaatctt tattgtgcag gacagattaa tggaactaca ggttatgaag
     3181 aggctgcagc acaaggcttt atggcaggaa tcaatgcaag tttaagcata gatatgaaag
     3241 agcctttgat tttaaggcgt gatgaagctt atataggagt tttaatcgat gatttagtaa
     3301 taaaaggtac aaaagaacct tatagaatgt ttacttcaag agcggaattt agactgcttt
     3361 taagggaaga aaatgctata cttagacttg gaaaatatgg ctatgattta gggcttttaa
     3421 gcgagcaaga ttttacttat atacaaaata tcgcaaacaa tcttcaaaaa ggacttgaat
     3481 ttttactttc taaagaattt acgcctaaca accaaaataa tgctttttta gagagtttag
     3541 gagaagataa aatttcttct atagtcaatc ttcaaaaaat tgttgcaaga gcaagttttg
     3601 atatagaaaa attaaaaaaa cttgacccta tatttgaaac catggatcat tactccttaa
     3661 gagagatttt aaatgaggca aagtattatc attacattag tatgcaaaaa gctcaagtag
     3721 aaaaaatgaa aaatcttagt gagcttaaaa ttcctgaaaa ttttgatttt aaaagtgtaa
     3781 gtggtttgag taatgaggtt gtagaaaagc ttaatcatca taaacctcca accatttttg
     3841 ctgcaagtca aatcagtgga atcactcctg cagcgttgga tattttgcaa atttatatca
     3901 aaatgcaaaa gaaaaaagct taaatgcttg ctttttttat ttttttatct actttagttt
     3961 tacttttttg gcgtccatgg aatttaccta tttgggtatt ttctagcttg ggggcttttt
     4021 ttgtttttat ttttcaattg gtagatttta aagatgcttt ttttgttttt tctttggttt
     4081 gggatagttc tttaactttg gttgggttga ttatcctttc ttttagcttg gaagctttgg
     4141 gattttttga ttttattgcg agtaaaattt tgtatttttc tagagagaaa aatcaagaaa
     4201 aaatttatat cagtacaaaa aaaatgatgt tatttttgtt gatttttgta ttttttcttt
     4261 ctgcattttt tgctaacgat ggagcgattt taatcattac acctattatt atagctttat
     4321 tttcaactct taaagattgt aaaaatcatg cttttatttt aagttctttt ttacttagcc
     4381 tttctttttt atgtgatgca agttcaaacg ctttggttat ttcaaattta accaatatca
     4441 tcacagcaaa ttattttaag atagaatttt tagaatttgc taaaaatatg tttttgccaa
     4501 atttttttgt tttgctttct actatagtta cggtttttgt gctttatgtg agagttttac
     4561 ctaaaaggct tgaatttaaa ttaatcaaaa aagagcaaat ttcattgaaa ttgttttttc
     4621 tttgcatagt atttttattt ctttttgtta tcagtttttt tataggtgaa atttttaata
     4681 ttaaaataag tttttttgct ttgctttggg cgggaatttt ttggcttatt attttaaaaa
     4741 ttcaaggtaa aaaaagtatt aaaattcttt ttgaagcacc ttatggagtt ttgcttttta
     4801 gttttgggct ttatatggtg gtttttgctt tacataaaat aggtgtgagt gaaattttgg
     4861 ttaaaagcta tgcttttttg atgcaagata agagtggaat ttttggtgtg gctttgattt
     4921 cagcttttgg atcttctgtg tttaataatt tgcctatggt tttaatcgga gatttggcat
     4981 taaaagaata ttttgagaat ttttcttttg attctttgat gatttatgca catcttttag
     5041 gtgtaaatat aggtccaaaa cttacgccaa taggttcttt agcaactttg ctttggcttg
     5101 gagttttggc tagaaaaggc attaatattt ctttttggca atattgtaaa tttggctttt
     5161 tgataacttt acctgtgctt gttttttctc tttttgctct tattgtctaa atatcaaaac
     5221 ttgttaaaca aagaaaaaat ttattttaat ttcgataaac ttttaacttg gttaaaaaat
     5281 aaaatcgaaa ggagcaagtt atggctacat ctgagagtag acgaagcttt atgggctttg
     5341 catttggaag cgtagctgct gtaggcggtg ttttctcact tgttgcgatg aaaaaaactt
     5401 gggatccgct tccaagtgtt aaagctgcag gttttactac agtagattta tcaggaatgc
     5461 aagatggaga gcttagaact atagaatggc gtaaaaagcc tatttttata ttaaaaaaag
     5521 atgcgagtat gccaaaagat gaaaaacgtg atgttgtggt agataacgca gcttatactg
     5581 tggttatagg actttgtacg catttgggtt gtatacctgc ttaccaacca agtgagcaat
     5641 tgtttaaatg cgcctgtcat ggtggagaat ttgacacaag tggaaaaaat gtctttggac
     5701 ctcctccaaa gcctcttgaa attcctcctt ttaaaattga tggaaccaag cttgttttag
     5761 gtgaagaggg tcctgaatat aaaaaaatga tagcggaggc ttaagatggc acaaattaga
     5821 aaagctaatg gtcttgtaga ttggcttgat caaagacttg cggtacataa actgcttgat
     5881 gttttaatgg taaaatattg gataccaaag caaattaact ttctttgggc aatgggggtt
     5941 attttaacca ctctttttgc agtgcttttt gttacaggac ttttacttgt gatgtattat
     6001 aaaccagata ctgcacttgc ttttgatagt gtgaataaga ctattatgca agaggtggac
     6061 tatggatggc tttggcgtca catgcatggt gttgccgctt ctgttgtatt tttgattata
     6121 tacatacata tgctaacagg aatttattac ggttcttata aaaaaggtcg tgagatgatt
     6181 tgggttagcg gtatgctttt gtttgttgta ttttctgctg aagcttttag tgggtatatg
     6241 cttccttggg gacaaatgag ttattgggca gctcaagtaa tcactaatct ttttggaggg
     6301 ataccattta ttggccctga gcttgtgatt tggattcgtg gagattatgc ggtttctgat
     6361 ccaactttaa caagattttt tatgcttcat gtgtgcttgc ttcctatagt tatcattgct
     6421 attatagcat ttcacttcta ttctttaaga attcctcatg ttaataatga aatttctgaa
     6481 gaacttgact ttgatttaga ggctgaaaaa tacatggcag gtgacacaaa gggttctaaa
     6541 gtgattcctt tttggccagg atttttatca aaagatttta tgtatataag cttttttatg
     6601 attttcttct tttatttggt ctgttttaaa tttgaatttg caatggatcc aattaatttt
     6661 gatccagcta atgcgcttaa aacaccagct catatttatc ctgagtggta tttcttatgg
     6721 agttatgaag ttttaagagg atttttcttt gatattgcag gtattaaagc ttttgatata
     6781 ggtttggctg catttggtat tgctcaagtg attttcttct tgcttccttg gcttgataga
     6841 agtgatgtgg taaaaccagc tcatgaaaga cctttatttt tcatttggtt ttggatattg
     6901 cttatcgatt taattgtttt aacagtttat ggaaaattac ctccaacagg tgtaaatgct
     6961 tgggtaggat tttacgcttc tatagtattt ttacttttac ttattgtagt tttaccggtt
     7021 attactatta tggagagaaa aggagctaaa caatgagaga aataaaaata tttttagttg
     7081 tagtagtttt tactgcactt gtatattggg gggtagagcc ttatgctcat tcagtgatga
     7141 agcctcatgt tgctcctgca aattttgatt ttgctgttga agatactact tttgcaaaag
     7201 gtatagttga agctaaagaa ttagctctaa aagatgcaca agcttcagga gatgctaaaa
     7261 gaatagagag tgcaaacaaa gaacttgaaa aagcaaaaga agaattaagc aaggttgaaa
     7321 cactttgggc agatgttgca aaaatcgatt ttgctaaggg tgatgcaaaa aaaggtaaag
     7381 aattttttga aaataactgt tttgcatgtc atggtgtaaa agaagatgga atagcagcta
     7441 atattactga ttcttctatg ggagtaatac cgcctgatct tagtgcagct ggtgctattt
     7501 ttgatgaaaa atttttagca gctttgatta tgcatcctgc gcttgcttta aaagtagatc
     7561 ataaatttgg cgatgctttt attatgacag cttacaataa agatacttca ggagaaagtg
     7621 aagaagctac aaatgcaaat atagccaatg taattgctta tcttaaagat gtgagtgtta
     7681 aatttgaagc caatgaagat gctactatta agaaagatgt tgaggcaaaa tatgctaaaa
     7741 tggaaaatag tgctcaaaaa gcagctttaa tggaaaaaga tataaaattt gctaaagata
     7801 aagcaacttt tattgaggct tgcggacgtt gtcatgatat gaaatacgat agctttttta
     7861 ctccatcaaa tcaaaatgat ttaaaaactt atttaggttc tgttccacct gatctttcta
     7921 tgatgataag atctcgtggt gagcaatatt tacatgattt tattaataat actcaaaaac
     7981 ttcttccagg aaccgctatg ccaagagtag gtttaacaga agctgcacag gctaaggttg
     8041 tatcttatat tgatcaagtg ggtgatagca aaaaagaaga aagaaaaact acaggaattt
     8101 atgtaatgat attctttgta attttaagta tttttgctat aggttggaag cgttctgttt
     8161 ggtctaaatt acattagtat tataaaattt ttgccactat tttatatctg tggcaaaaat
     8221 tctatctttt ct
//
LOCUS       DARGEM010000073         8154 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.073, whole genome shotgun sequence.
ACCESSION   DARGEM010000073 DARGEM010000000
VERSION     DARGEM010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.073"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..769
                     /locus_tag="SFZ78_001219"
     CDS             <1..769
                     /locus_tag="SFZ78_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8212087.1"
                     /translation="FFICKIKLFIFIVRFFAYMIFIATIITKPQFISPFTSVFSSDKL
                     YESQFEKSLNDLNASAIMILTDISQDNFNLPSKDQNISFTELNSAKALIIANKEKLKE
                     ILSKVYNDKYVSDYKKVLNELENNTSNIKNIIEEIDNKNNNSVVSAQLNKFLKLNFSQ
                     KIDILYAIKSNFSISEKLSPEQMALFDQKDSQDKLKSVLALLKFKSSFEGILKIINQD
                     EITENTIKSTSVLYGIILLLCIFSLQKTARKNSIVPS"
     gene            complement(799..1500)
                     /locus_tag="SFZ78_001220"
     CDS             complement(799..1500)
                     /locus_tag="SFZ78_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG8212088.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYSNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1487..2698)
                     /locus_tag="SFZ78_001221"
     CDS             complement(1487..2698)
                     /locus_tag="SFZ78_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG8212089.1"
                     /translation="MQKQTKIHGFAKFKLIIILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFETKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFGLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILTKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKNENK"
     gene            2803..4152
                     /locus_tag="SFZ78_001222"
     CDS             2803..4152
                     /locus_tag="SFZ78_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG8212090.1"
                     /translation="MQTLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(4176..5219)
                     /locus_tag="SFZ78_001223"
     CDS             complement(4176..5219)
                     /locus_tag="SFZ78_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8212091.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVSCHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
     gene            complement(5397..6044)
                     /locus_tag="SFZ78_001224"
     CDS             complement(5397..6044)
                     /locus_tag="SFZ78_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG8212092.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHIFSKENHYLIATLSNPFFIDVKKDLESNFKDLEENLNSIKNKLFK"
     gene            complement(6044..7852)
                     /gene="typA"
                     /locus_tag="SFZ78_001225"
     CDS             complement(6044..7852)
                     /gene="typA"
                     /locus_tag="SFZ78_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG8212093.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            7987..>8154
                     /locus_tag="SFZ78_001226"
     CDS             7987..>8154
                     /locus_tag="SFZ78_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212094.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILEN"
BASE COUNT         2846 a         1367 c         1253 g         2688 t
ORIGIN      
        1 tttttttatt tgtaaaatta aattatttat ttttattgtg agattttttg cttatatgat
       61 ttttattgca acgattataa caaaaccaca atttataagc ccttttacaa gtgtattttc
      121 atcagataaa ctttatgaaa gtcaatttga aaaaagttta aatgatttaa atgcgagtgc
      181 tattatgatt ttaaccgata tttcgcaaga taattttaac cttccttcaa aagatcaaaa
      241 catttctttt acagagttaa attcagctaa agctttgata atagcaaata aagaaaaatt
      301 aaaagaaatt ttatctaaag tgtataatga taaatatgta agtgattata aaaaggtttt
      361 aaatgagcta gaaaataaca catcaaatat aaaaaacatc atagaagaga tagataataa
      421 aaacaacaat agcgttgtat ctgctcaact taataaattt ttaaaattaa attttagtca
      481 aaaaatagat attttatatg cgataaaaag taatttttct atatctgaaa aactatcacc
      541 tgagcaaatg gctctttttg atcaaaaaga cagtcaagat aaattaaaaa gtgtcttggc
      601 tcttttgaaa tttaaatcaa gttttgaagg gattttaaag attataaatc aagacgagat
      661 tacagaaaac accataaaat ccactagtgt tttatatggc attatccttt tgctttgtat
      721 attttcactc caaaaaaccg cacgaaaaaa ttccatagtg ccaagctaag ccttaaagct
      781 tagcttgaaa tttcatcatc agtcttttaa gtagtattct atagtagaaa ccactcttat
      841 ggttttgatg taaggggtgt ttttatctct gttgctgatg ctaaattgcc cttgagaagc
      901 cttttttatc ttgcctagat ggctgtttga atcttgtgcg aattttatcg ctgcatttct
      961 agcattgagc gttgcttctt ctatcatttg aggttttatc tcatttagct tggtgtaaag
     1021 gtactctatg tcataattat cgattttcgt tactatgcca aattttgcaa gacttgaaat
     1081 gttttctagt atgctttttc caagctttac gttttgtgta tagatgagta aattcgcagt
     1141 gcctatgtat cggtatgtag cttgagtatc gttgctataa ggatcgctta aacgatctat
     1201 gatgttcggc gagttgtagc tgatctcatc ttcttttacg ccttgttctt ttaaaaattt
     1261 aatgatattt tctttatctt gttctagttc ttcgtataaa tttgtaagat tgttgtttga
     1321 tcttgtgaat tttataggaa gtatcaaagt atccgcttcg acttcttttt gacttaaacc
     1381 ctttacactt acacttcttt caagtgtttt aaaatcactt aaagccttgt taaatccaaa
     1441 agctagaatc aaacttgcta aaactatggc taaagccata aagatattat ttgttttcat
     1501 ttttttcctt tattttgatt agaaaatata tcatatttgc aaccaatacg caagcacaca
     1561 ttacaaaagc aaggattatc ggcgtatttg cgttaatagc cccaaccaca aaagaaataa
     1621 gccctgcaaa accaaattgc accgttccaa gcaccgcaga agcagttccg ctatgttctt
     1681 taaaccttgc catggctaaa gtcgtggtat taggtgcgat gaaaccaagc atagcgatac
     1741 ttgtaaaaat gctaagttca aaaagcaaga aatttggatg aaaaaaggca tttacaagta
     1801 aaatcacggt cgatataaac attatcatca aagcttttgt caaaattttt tcgctttcgt
     1861 attttaaaac caatctcgca ttgatatttg cacagatgac aaaacctaaa gcatttgccc
     1921 caaaaagcaa agcaaatttt tgctcactca agccaaaaaa ctgcgtaaaa acaaagcttg
     1981 atcctgtgat ataagcaaac atcgccgcca aagcaaaaga agcacatagt atataaacca
     2041 aaaagcgttt atcgcttaaa acaaatttgt agcttttcat cgcttcatga tgggaaaatt
     2101 ttttgttttt aagatgaggt gcggactctt ttaaaccaaa aagtatcatc aaaaaaagta
     2161 aaattcccaa agcaaacaaa gtcgcaaaaa tactatgcca tgaaaaatac tctagcaaaa
     2221 ttcccccaaa agttggcgaa agcataggag caagagagct aaaaaccatc atcaaagcaa
     2281 aaattcctgc agcttctttg gtctcaaaca agtcattgac aatagccctt gcgataacca
     2341 cacctgcaca acccccaagt gcttcaaaaa atctcaaagc gataaaagca taaatatcat
     2401 cgataatcac acaaaacaaa ctcgaaacga tgaagaaaaa tatccctacc aaagctggaa
     2461 ttttacgccc aaaaatatca cttaaaggcc catatataag ctgtcctaag gcaaaagcga
     2521 taaaaaaact tgcaatacta agttgggtta aaaaagaatt agtttgaaaa ctttgttcta
     2581 catgagaaag tgcaggtaaa tacatatctg tagaaagtgg cgctatgctt gacatcaaag
     2641 caaggataat gataagttta aatttggcaa agccgtgaat tttggtttgt ttttgcattt
     2701 gtaatcctaa ttattctaaa agaatgattt taacgagtca atcttagaat aatctttgtt
     2761 tttctatgtt aaatttagag aaaaattcta aggaaatttt ttatgcaaac tttaaaccaa
     2821 aatgaacaaa tcaaatgccc aagttgtgga agttttatcg atatcagtac tgctttatat
     2881 gctcaaattt tagataaagc taaacaagaa atgctaaaac aaaaaaaaga atttgatgat
     2941 gaggtaaatg ccaaaagagc tgaatatacc aaagctttaa atgatttaaa aactcaaaag
     3001 atagaacaag aaaaactcat aaacgagcaa gtaagccaaa agcttctttt agaaaagcaa
     3061 aaatttgaac aagaacttct cacgcaaaag caaaatttcc aaaaagaatt cagcgagaaa
     3121 tttaacaaag agcatgaaaa tgaaatgaaa atcatgcaag aagaactcga gaaaaaaagc
     3181 aaagagctta gcgagttttt aagcataaag gctgaaaatg aaaggctaaa aagagagcaa
     3241 aaagaaaatg aagaaagatt gaaatttcaa gccaaagaag aggcttttaa agaatttaaa
     3301 gaacaagaaa gcaaaaattt ggaatttgaa agagaaaaaa tgcgtcttga atttcaaaaa
     3361 agcactcaag agcaagatct taaatacaaa gaactagaaa cgaattttaa aagtgtagcc
     3421 caaaagttag aagacgcaca acgcaggata gagcaaggct cacagcaact ccaaggcgaa
     3481 gcagccgaac tactcataga agaatacata caaagtgagt atttaagcga tgaagtaaaa
     3541 gaagtgccaa aaggcgtaaa tggagctgat tgtctgcata tagtaaagga taattttgga
     3601 aatatttgtg gaagtatttt gtatgagagc aaacgcacta aagaatttaa taaagaatgg
     3661 cttgataaac ttaaactaga tagtatagcc gcaaaaagtg atatagcagt tttgatcaca
     3721 aaaactatgc caaaagataa agaaaaaacg cattttaaag aaggaatttt gatttgtact
     3781 tttaatgaat tcaaaggtgt tttagcagtg cttagagaaa gcattataaa cgcttataaa
     3841 ctcaaaaatg ccctgcaaaa caaagatgaa aaaaatcaca ttttatacga atacttaaat
     3901 tccaaggaat ttaatacgca aatcactttt atactcaaaa cttaccaaaa tatgaaagaa
     3961 gagttagaag ctgaaaaaag ggctttgcaa aatatatgga aaaaaagaga aagagctata
     4021 gaaaatctaa gttttaattc cactgccata gtgagttctt taaatgcgat atttagcgac
     4081 ttacaaggtg gaaatttgat aggcgaagaa gggattaaaa gtcttgaaaa tttagccaaa
     4141 gatgaggatt aattttgggc ttagcccaaa attaatcatt ctcctgggaa gtgatttgga
     4201 tttttccaag gtccgtattt tacttttatg tattctttag ggtctaaatt ttgttgtggt
     4261 gaagcaaaat actcaggttt taatgatggg gatttgctat aagctgtatc aagtcctgca
     4321 cgattttctg tagtggttat aggcattctt acaaaacctg tattgacata agctgctata
     4381 tccagtgcat cttcatcgct taatatagga ttatctgcac tcgcaccaaa aggcatggct
     4441 gattttaaaa atcttgctaa aaatggtatc atagccatgt gtccaccatc aggatagata
     4501 agtaaagatg gatataaatg tccgctacct tgttcgtaat tatcattttt taccccaagt
     4561 cctctttcgc catgacaaga aacgcaattt tcttcaaaga gctttttccc acgcacaggg
     4621 tcagctgggc gatttggaaa attcatctta gcaaaaaaat ctccttcaag ctttacgccg
     4681 tctttgatac cataagcttc ttttagccat ttaaaataag ctaaaattgc tttcatttct
     4741 ttagaatcat taggaaatct atgagagtca gttccgccca ttccgcgaat tctatcttca
     4801 acagagatga ttttcatcgt ttctatgtca agtcttggat aattgtttag gatatttaaa
     4861 aatggaataa catatttttt tgtccctggc aaaccattgc cgtcattgtc catgtgacag
     4921 gaaatacagt ttacttcgtt gcttgtcttt tttagcttgc tatagggtcc tagagtactt
     4981 tctgtcttgc ttaaaagctc tatgccataa cggattaaat ccccttgctt accttttgga
     5041 acatcattga tgcttaaatt tttatttggc cattcttgca caggtctttt ggaaagttcc
     5101 ttaaaatact ctactccttc cttgtcgctt aattcttctc ctactttgta atcactcacg
     5161 cttttagcac taagactcaa actaagacat aaaccaagca ataaaatgtg ttttttcatg
     5221 attttcctcc tttttatttg cagttcaaat tgattttagt gtattttttc ttaaatatta
     5281 agcataataa gaataattta aataaaatta aattttagag tgttactaaa agtaatatat
     5341 ttttaaagca tataattaat atttattaaa attttatgat attaacttta tgttaattat
     5401 ttaaatagtt tgttttttat agaatttaga ttttcttcta aatctttgaa attgctttct
     5461 aaatcttttt ttacatctat aaagaaagga ttgcttaaag tagcaataag ataatgattt
     5521 tctttagaaa agatatgatt taaagtgaaa tttttatctt gaagtttgat ataaatttgc
     5581 tcttcatttt caaagctagg atttttgttt gcacttaaaa tttcgagcaa aattccgcaa
     5641 aaaaagcgtt tattttcgtc caaaaactga atatcataaa ttttaaaatc cttaaattca
     5701 aagcagtttt gacttttaaa ttctttcaaa tcctttgtaa gtcctaattt taaaaagtct
     5761 ttttggctta aactttgctt tttaaatttt gccccaaaac gacgcaaaaa caaatttaaa
     5821 gcattaattt gtaattcttt ttgtgcgagt tttagttttt tagctgtaaa acgaaagaaa
     5881 aaaacaccta caaaaacagc taaaattact gcgattaagg catctcttat aaaaacaaag
     5941 gctaaaaaac ctacaagtaa ggcttcgata atgcttagga attttaagat tcctaagcgt
     6001 ttaagtatat aaagtctatt attttctaag ctttttaaat ccattaagat tttgcttttt
     6061 ccattctttt tctttgagtt gggtcaagat agcgtttgcg aacacgcaca tttacaggtg
     6121 taacttctac aagttcatct tcttctatcc actctaaagc tctttcaaga cttaattttc
     6181 taggtggcac aagtttgatt gcatcatcgc ttccacttgc tcttacattg gtaagattct
     6241 ttcctttgat aggattaaca tctaaatcat ttggacgaga gtgctcacct ataatcatac
     6301 cggtataaac tttagtttga ggctctatga aaagtactcc acgctcttga aggttaaaca
     6361 aagaataccc taaagccacg ccattttcca tagaaattaa cgctccatta ttacgctttt
     6421 caaccgcacc gctaaaagga cggaattcta aaaagctatg attcatcacg ccttcgcctt
     6481 tggtatcggt taaaaactga cttctaaaac ctataagtcc gcgtgctgga atttcaaact
     6541 caagtcttgt ttgtccatcg cctgttggcg ccatggtttt catttcagct tttcttttgc
     6601 caagtttttc tattaccgca ccgctaaatt cctcaggtac atcgataact aaatgttcaa
     6661 aaggttctgt tttaacccca tcttcaacct ttacgataac ttcaggtctt cccatacaaa
     6721 actcaaaacc ttcacgacgc atattttcag ctaaaatagt gatttgaagt tcgcccctac
     6781 cgcttacttt aaatttgcct tcgcctgtgc tttcgtattt catagcaata ttagttttca
     6841 tttcagcttc taaacgttca gcgattttat ttgaagttac atgttttcct tcagttcctg
     6901 ctaatgggcc atcatttaca gaaaatacta tacttaaagt cggctcttca atgtgtaaag
     6961 gatcaagtgg cataggattg tttggatcta caacgctatc acccacatct aaagcttcaa
     7021 aacctgctat agctacgata tctccacttc ctgcttcttc aatatccatt ttttctaagc
     7081 ccataaagcc aatgagcttt gaaattctac catttacttt ggtgccatca gcttttgcaa
     7141 gcattacgct ttgatttttc ttaacaaccc cattgaaaat tctagcaatg cctattttac
     7201 ctacgaaatt atcataccct aaagtgaaaa cttgaagttg taaaggattg tcatttgtac
     7261 cacttggcgc tggaacgcgt tcaagtatag ttttaaaaag tggctccata ttatcacttt
     7321 catcgtttag atcaagctta gcataaccat tttttgctgc agcataaact atagcaaagt
     7381 caagttgctc atcgtttgca tctagggcta caaaaagatc aaaaatttca ttgattactc
     7441 tttcaggatc agcagctggt ttgtcgattt tgttgattac aactataggt ttaagcccta
     7501 aagataaagc ttttttaacc acgaatttag tttgcggcat aacgccttct tgagcatcca
     7561 ctaaaagcaa aactccatca atcattttta aaacgcgttc tacttctccg ccaaaatcag
     7621 catgccctgg agtatctatg atgttgattt ttgtaccttt gtaattgatc gctgtgtttt
     7681 ttgaaagtat ggtaatgcca cgttcttttt ctatatcgtt gctatccata acgcgttctg
     7741 aaatttgttc tctttcgcta aaggtgcctg attgttttaa taattcatct accatagtgg
     7801 ttttaccatg gtcaacgtga gctataactg ctatatttct aatgttttcc aaattttctt
     7861 ctccaaagct aaatttttaa aagcttagat tatacaaaaa tttaacttaa actacaaagc
     7921 atcaaaactt ggaacacttc ttgctttaaa gacttgtgaa attaaaattt taaaaaggaa
     7981 gttaaaatgt caaaaccatt aaatgaagag atttttattg aatttaaaag cgatttagct
     8041 gagagaaaaa atgaagtttt acttcaagtt ttagaacttt tagaaacttt tagatcagat
     8101 aaaaacgaaa aaatggcaag aatttcaagt gagcttacag aaattttaga aaat
//
LOCUS       DARGEM010000074         7652 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.074, whole genome shotgun sequence.
ACCESSION   DARGEM010000074 DARGEM010000000
VERSION     DARGEM010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7652
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.074"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1046
                     /gene="ccoG"
                     /locus_tag="SFZ78_001227"
     CDS             <1..1046
                     /gene="ccoG"
                     /locus_tag="SFZ78_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8212095.1"
                     /translation="INNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFF
                     NYIQNPGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIY
                     DEKRGGLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADAC
                     SKVQSKFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESM
                     LLNINRSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRP
                     NKPFKLKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVY
                     PKSTLIKDKNELK"
     gene            1033..1665
                     /gene="cmeR"
                     /locus_tag="SFZ78_001228"
     CDS             1033..1665
                     /gene="cmeR"
                     /locus_tag="SFZ78_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG8212096.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            1760..2863
                     /gene="cmeA"
                     /locus_tag="SFZ78_001229"
     CDS             1760..2863
                     /gene="cmeA"
                     /locus_tag="SFZ78_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG8212097.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEVPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            2863..5985
                     /gene="cmeB"
                     /locus_tag="SFZ78_001230"
     CDS             2863..5985
                     /gene="cmeB"
                     /locus_tag="SFZ78_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG8212098.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            5978..7456
                     /gene="cmeC"
                     /locus_tag="SFZ78_001231"
     CDS             5978..7456
                     /gene="cmeC"
                     /locus_tag="SFZ78_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG8212099.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNTPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(7479..>7652)
                     /locus_tag="SFZ78_001232"
     CDS             complement(7479..>7652)
                     /locus_tag="SFZ78_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212100.1"
                     /translation="NIAKINDTEVFDFKNAKNLNPEEVYKQFYHFDYAIRKLLPAIYK
                     VYEITDTDLDKDF"
BASE COUNT         2737 a         1145 c         1264 g         2506 t
ORIGIN      
        1 atatcaataa caaacaaaaa gaatatgagg gacaatattt taaaaaattt cttggagtaa
       61 taatttttta ttttatatct ttagttgctg ttagtaattt actttggtac tttattcctc
      121 ctgaagattt tttcaattat attcaaaatc ctggcgagca tctactttta cttggaattt
      181 tattttgtgc tagcttactt tttactttgg atattaccta tttacaagaa aaattttgtg
      241 tttatgtctg tccttatgca agaatacaat ctgtaatgtt cgatcatgat acaatgcaag
      301 tgatctacga tgaaaaacgc gggggcttga tctatgatgg acacaccaaa cttcataaaa
      361 aaccgcctga gggagaatgc ataggttgcg aagcctgtgt tagcatctgt ccaactcata
      421 ttgacatacg caaaggaatg caacttgaat gtattaattg tcttgaatgt gccgatgctt
      481 gctctaaggt tcaaagcaaa tttaatcgtc caagtttgat caattggaca agtgcaaaag
      541 ctattgaaac gcgttctaag gttcattatt taagatttag aacgatagca tattttatag
      601 ttcttctaat tgctttactg gctttaatca tcatgggaag caaaaaagaa agcatgcttt
      661 taaatatcaa tcgtagtagt gaattatata atatttcaaa tgttaaaggt gaattagtca
      721 tttcaaatgc ttataccttt ttgtttcaaa atacagattc taaacctcat gaatattatt
      781 ttacagcaaa tttagaagga ataaatgatg gaattgaaat cataagacca aacaaacctt
      841 ttaaattaaa agcaggagaa caagtcaaaa aaatagttgt tatcagggct acaaaaaatt
      901 tagcaaataa tgataaaaaa gacgtaatct ttcctttaca tataaaagct tacgcaaagg
      961 ataatgaaaa aatttcggtt tttagaaaaa gtatatttgt ataccctaaa agcactctta
     1021 taaaggataa aaatgaactc aaatagaaca ccatcacaaa aagttttagc cagacaagaa
     1081 aaaatcaaag cagtggcctt agagcttttt ttaacaaaag gataccaaga aacaagtttg
     1141 agtgatatta ttaaattatc tggaggatct tattctaata tttatgatgg ttttaaaagt
     1201 aaagaagggc tattctttga aattttagat gacatatgta aaaaacactt tcatcttatt
     1261 tattccaaaa cacaagaaat tgaaaatggc actttaaaag aaattttaac ttcttttggt
     1321 ttagctttta tagaaatttt caatcaacca gaagctgtag cttttggtaa aattatctat
     1381 tctcaagttt atgacaaaga tagacatctt gccaattgga tagaaaacaa tcaacaaaat
     1441 ttttcctata acatacttat ggattttttc aagcaacaaa ataattctta tatgaaaaaa
     1501 aatgcagaaa aacttgctgt tcttttttgc actatgttaa aagaacctta tcatcatctt
     1561 aatgttttaa ttaacgctcc tttgaaaaat aaaaaagaac aaaaagaaca tgttgaattt
     1621 gttgtaaatg tttttctaaa tggaatcaat agctccaaag cttaaaaaat aattttatta
     1681 accaaaatta agatataatt agccaaaaat ttttgtaata aaaattacaa tttttaattt
     1741 aatttttcaa ggcaaaacca tgaaattatt tcaaaaaaat actattttag ctttaggtgt
     1801 tgtgctttta ctcactgctt gcagcaaaga agaagtacca aaaatacaaa tgccgcctca
     1861 acctgtaaca accatgagtg ctaaatctga agatttacca cttagtttta cttaccctgc
     1921 taaacttgtc agtgattatg atgtcattat aaaacctcaa gttagcggcg taatagtaaa
     1981 taaacttttt aaagctggag ataaggtaaa aaaaggacaa acattattta ttatagaaca
     2041 agataaattt aaagctagtg ttgattcagc ttacggacaa gctttaatgg ctaaggcaac
     2101 tttcgaaaat gcaagcaagg attttaatcg ttctaaagct ctttttagta aaagtgcaat
     2161 ctctcaaaag gaatacgact cttctcttgc tacatttaac aattcaaaag ctagtctagc
     2221 aagtgctaga gcacagcttg caaatgcaag aattgatcta gatcataccg aaataaaagc
     2281 tccttttgat ggtactatag gagatgcttt agttaatata ggagattatg taagtgcttc
     2341 aacaactgaa ctagttagag ttacaaattt aaatcctatt tacgcagatt tctttatttc
     2401 agatacagat aaactaaatt tagtccgcaa tactcaaagt ggaaaatggg atttagacag
     2461 cattcatgca aatttaaatc ttaatggaga aaccgttcaa ggcaaacttt attttattga
     2521 ttctgttata gatgctaata gtggaacagt aaaagccaaa gctatatttg acaacaacaa
     2581 ctcaacactt ttaccaggtg cttttgcaac aattacttca gaaggtttta tacaaaaaaa
     2641 tggctttaaa gtgcctcaaa tagctgttaa acaaaatcaa aatgatgttt atgttcttct
     2701 tgttaaaaat ggaaaagtag aaaaatcttc tgtacatata agctaccaaa acaatgaata
     2761 tgccattatt gacaaaggat tgcaaaatgg cgataaaatc attttagata actttaaaaa
     2821 aattcaagtt ggtagcgaag ttaaagaaat tggagcacaa taatgttttc taaatttttt
     2881 atcgaaagac ctgtttttgc ttcagttgtt gcaattatca tttctttagc tggagttata
     2941 ggtcttacaa atttacctat agaacaatat ccttctttaa cccctcctac agttaaagta
     3001 agtgcaactt acacaggagc tgatgcacaa accattgctt caacagttgc aagtcctatc
     3061 gaagatgcaa tcaatggcgc agataatatg atttacatgg attcaacttc aagttcttca
     3121 ggaactatga gtttgactgt ttattttgat atcggtacag atcctgatca agccaccata
     3181 gatgttaata atagaatttc agccgcaact gcaaaaatgc cagatgcagt taaaaaactt
     3241 ggagtaacag ttagaaaaac ttcctcaaca acacttgctg caatttctat gtattcaagt
     3301 gatggctcaa tgagtgcagt agatgtatat aactatatca ctttaaatgt tttagatgag
     3361 ttaaaaaggg ttccaggagt tggagatgca aacgctatag gaaatcgtaa ttattcttta
     3421 agaatttggc tcaagcctga tttattaaat aaatttggaa tcacagctac tgatgtaatt
     3481 tctgcggtta atgaccaaaa tgcccaatac gcaactggta aaattggcga agaacctgta
     3541 acccaaaaat ccccttatgt ttattcaatc actatgcaag gaagactaca aaatcctagt
     3601 gaatttgaaa acattatttt aagaacaaat aatgatggat catttttaag acttaaagat
     3661 gtagctgatg tggaaatagg atcacaacaa tacagctcac aaggacgatt aaatggcaat
     3721 gatgcagttc caattatgat caatcttcaa tcaggggcaa acgcattgca tacagcagaa
     3781 cttgttcaag ccaaaatgca agaactttca aaaaattttc caaaaggttt aacatataaa
     3841 attccttacg atacaacaaa atttgtaata gaatcaatca aagaagttgt taaaactttt
     3901 gttgaagctc taattttagt tatcattgtt atgtatatgt tcttaaagaa tttccgtgca
     3961 acacttattc ctatgatagc tgtacctgtt tcattgttag gaacttttgc tggactttat
     4021 gttttaggtt ttagtattaa cttgcttacg ctttttgctt taattttagc catagggatc
     4081 gttgtagatg atgcgattat agttgtagaa aatattgata ggattttaca tgaaaatgag
     4141 caaataagcg taaaagatgc tgctatccaa gcgatgcaag aagttagctc tccggttatt
     4201 tcaattgttc ttgtgctttg tgctgttttt gtaccagttt cttttatatc aggttttgtt
     4261 ggagaaattc aaagacaatt tgctcttacc ttagctatat ctgtaaccat atcaggtttt
     4321 gttgctctta ccttaacacc ttctttatgt gcactctttt tgcgacgcaa tgaaggagag
     4381 ccatttaaat ttgtaaagaa atttaatgat ttttttgatt ggagcacctc tgtatttagc
     4441 gcaggagtag catatatcct aaaaagaacc attcgttttg ttttaatttt ttgtattatg
     4501 cttggagcaa ttttttatct ctataaagca gtaccaaatt ctttagttcc tgaagaagat
     4561 caaggtttga tgattagcat tattaatctt ccttcagctt cagcactcca tagaacaatt
     4621 tcagaggttg atcacataag ccaagaagtt ttaaaaacta atggagttaa agatgcaatg
     4681 gctatgatag gatttgatct ttttacaagt tcactcaaag aaaatgccgc tgcaatgttt
     4741 ataggtttgc aagattggaa agatagaaat gtaagcgctg atcaaattat agccgaactt
     4801 aataaaaaat ttgcttttga tcgcaatgct tcaagtgtat ttataggctt acctcctata
     4861 cctggattaa gtatcacagg cggttttgaa atgtatgttc aaaacaaaag cggaaaaagc
     4921 tatgatgaaa tacaaaaaga tgtaaataaa cttgttgctg tggccaacca aagaaaagag
     4981 ctatcaagag taagaacaac ccttgataca actttccctc aatacaagct tataattgat
     5041 agagataaat taaaacacta caatcttaac atgcaagatg tttttaacac gatgaatgca
     5101 actataggca cttattatgt taatgatttt tctatgctag gtaaaaattt ccaagtaaat
     5161 atccgcgcaa aaggtgattt tagaaataca caagatgcgt taaaaaatat ttttgtaaga
     5221 tcaaatgatg gaaaaatgat accacttgat tctttcttaa ctttacaaag aagttcaggg
     5281 cctgatgatg taaaacgatt caaccttttc ccagcagcac aagttcaagg tcaacccgca
     5341 ccaggttata cttcaggtca agctatagaa gcgattgctc aagtagcaaa agaaacttta
     5401 ggggatgatt attccatagc ttggagtgga tcagcttatc aagaagtttc tagtaaagga
     5461 acagcaagtt atgcttttgc tttaggtatg atatttgtct ttttaattct agctgctcaa
     5521 tatgaaagat ggcttatacc tttagcagtc gtaacagctg taccttttgc ggtatttgga
     5581 tcatttttat tggtatattt aagaggattt agcaatgata tatattttca aacaggactt
     5641 ttgctcttga ttggactttc agctaaaaat gctatcttaa tcgtagaatt tgcaatggaa
     5701 gagcgcttta aaaaaggtaa aggagttttt gaagcagctg ttgcagcagc aaaacttcgt
     5761 tttcgtccta tcataatgac ttctttggca tttacttttg gggtcttacc aatgattttc
     5821 gcaacaggag caggaagtgc ttcaagacac tctttaggaa cagggcttgt tggtggaatg
     5881 atcgcagcat caactttagc gatattcttc gtgcctttat ttttctatct tttagaaaat
     5941 tttaatgaat ggctagataa aaaaagaggt aaggttcatg aataaaataa tttcaattag
     6001 cactatagca agttttactc ttttgatttc agcttgctct ttaagtccaa atttaaatac
     6061 tcccgaagca aactatagca ttgataataa gcttggagcc ttatcttggg aaaaagaaaa
     6121 caatagctct atcacaaaaa attggtggaa agactttgat gatgaaaatt taaataaagt
     6181 ggttgattta gcacttaaaa ataataatga tttaaaactt gccttcatac acatggaaca
     6241 agctgctgct caattaggta tagattttag cagtttgttg ccaaaatttg atggtagtgc
     6301 aagcggaagt cgtgcaaaaa cagctataaa tgctccaagc aatcgaactg gggaagtaag
     6361 ttacggtaat gattttaaaa tgggacttaa tttaagctat gaaatcgatc tttggggaaa
     6421 atatcgcgat acatatcgcg cctcaaaatc aggctttaaa gcaagtgagt atgattatga
     6481 agctgcaaga ctttctgtta tttcaaatac agttcaaact tattttaatc ttgtaaatgc
     6541 ttatgaaaat gaaaatgctc ttaaagaaac ctatgaatcg gcaaaagaaa tttataggat
     6601 taatgatgaa aaatttcaag ttggtgctgt aggtgaatat gaacttgctc aagcaagagc
     6661 caacttagaa agtatggctt tgcaatataa tgaagcaaag ttaaataaag aaaattacct
     6721 taaagcttta aaaattttaa cttcaaatga tttaaatgac atactttaca aaaatcaaag
     6781 ctatcaagtt tttaatctta aagaatttga cattccaact ggaatttcaa gtaccatctt
     6841 gcttcaacgt ccagatattg gctcttcttt agaaaaatta actcagcaaa attatcttgt
     6901 tggagtagct cgcacggctt tcttacctag cctttcttta acaggattat tgggatttga
     6961 aagcggggat ttagatacct tggttaaagg aggttctaag acttggaata taggtggaaa
     7021 ctttactctg cctatttttc attggggtga aatttaccaa aatgtaaatt tagccaagct
     7081 taataaagat gaagcttttg taaattatca aaatactttg attactgctt ttggagaaat
     7141 tcgctatgct ttagtagcta gaaaaactat acgcttacaa tacgataatg cacaagcaag
     7201 cgaacaatct tacaaaagaa tctatgaaat tgctaaagaa cgctatgata taggagaaat
     7261 gtctttgcaa gattatttag aggcacgtca aaattggctt aatgctgccg ttgcttttaa
     7321 taatactaaa tattcttatg ccaattccat agtagatgta atcaaagcat ttggtggagg
     7381 atttgagcaa aatgaagaca cgagtaaaaa tataaaagaa gaatcaaaaa atttagatat
     7441 atcttttaga gaatagttcg ttctattctc taaataaatt aaaaatcttt atctaaatct
     7501 gtatctgtaa tttcataaac cttgtaaata gcaggcaata attttcttat agcataatca
     7561 aaatgataaa attgcttata tacctcttct ggatttaaat ttttagcatt cttaaaatca
     7621 aatacttcag tatcattgat tttggcaata tt
//
LOCUS       DARGEM010000075         7580 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.075, whole genome shotgun sequence.
ACCESSION   DARGEM010000075 DARGEM010000000
VERSION     DARGEM010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7580
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.075"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(8..1256)
                     /locus_tag="SFZ78_001233"
                     /pseudo
     CDS             complement(8..1256)
                     /locus_tag="SFZ78_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(1256..1771)
                     /locus_tag="SFZ78_001234"
     CDS             complement(1256..1771)
                     /locus_tag="SFZ78_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8212101.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1772..2779)
                     /gene="tsaD"
                     /locus_tag="SFZ78_001235"
     CDS             complement(1772..2779)
                     /gene="tsaD"
                     /locus_tag="SFZ78_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8212102.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLEPLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKYSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNINLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            complement(2776..4170)
                     /locus_tag="SFZ78_001236"
     CDS             complement(2776..4170)
                     /locus_tag="SFZ78_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG8212103.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFANISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDSNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(4172..5242)
                     /locus_tag="SFZ78_001237"
     CDS             complement(4172..5242)
                     /locus_tag="SFZ78_001237"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG8212104.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(5239..5964)
                     /locus_tag="SFZ78_001238"
     CDS             complement(5239..5964)
                     /locus_tag="SFZ78_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG8212105.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSLTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTLL"
     gene            complement(5973..6311)
                     /locus_tag="SFZ78_001239"
     CDS             complement(5973..6311)
                     /locus_tag="SFZ78_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212106.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(6313..>7580)
                     /locus_tag="SFZ78_001240"
     CDS             complement(6313..>7580)
                     /locus_tag="SFZ78_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG8212107.1"
                     /translation="RFKKIDFIKRINDNILELSFDRERFIFDLTRAMSAIYTAKFNAK
                     NYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSYESKIYFEFTGKNTN
                     VILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEEIKDFADYFSRKFTS
                     IYESKIKQIKNLKLAQVDKKIQNLQELCSSLDEENSLFLKALEYRKRADVLFANLSVL
                     KDYEREIKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAKNLNIQRQNLKEKLD
                     FTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYFNEFKICVGKNEKGN
                     EFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARLCVSFSKLKKGSYWV
                     DYTLKNFVKVQQKAFVNYTNFKSINITKD"
BASE COUNT         2525 a         1376 c          952 g         2727 t
ORIGIN      
        1 gatttcctta aattttatct atctttaaca atattttgtc atctttttcg ctaaatttat
       61 acaacaaatc ctcacaagga taagagatgt atttttcttt acaatctttt tttggatttt
      121 gttttatttt ttctagcatt aaaggaagtt ctttcttaat caaaagtttt actggaattc
      181 ccatgccgtg atttaagttt ttaataaatt ttccatcaac ttgagattct ttagtaatag
      241 aatgcaaagt tgcatcaaaa ccaagtttct caagctcttt ataaagcata gttttttctt
      301 ttaaagaaac atactcatca tataatgaat gataacttat aaagcaagtt tttaaacatt
      361 ttgattgttc taaaagatga tcttcctcta aaagatttcg aatttttctt cttgcgggag
      421 aaaaaaaacg aggcgacgaa gaattacttg tccaaaaagt ttttgtcgaa caatgtgttt
      481 taatatgatg aaaaaaatca aaagtagcaa attcgctata ctgcataaaa tctatttcct
      541 ttccaaaacc tacaactctc cataaaaact tagcaccact agaattatct atcaccccat
      601 ctaccaacca aggtgcaatc ttagctgcca aatgtgctaa atatccccca tgagaactac
      661 ctatcataat aactggtata cccccccccc atagtatcaa aaggagcatg ttttttaagg
      721 taaagtgcaa catttaaaag atcttgagct tgcataatcc caaaattttg atattcgttt
      781 tttgcaggtt gcaaactcac atgtaaattt aaaaaataat ttggtgtaaa attacctttt
      841 tgcttgcctt caaccatttg attatttaca aaatgaaaaa tttcactcat ttgtttataa
      901 tcttgaattt tatcaacatc ataaggaagc ttgatatccg cagcttcaca acttgctttt
      961 aaaataagct tgtctatatc atctaaataa aaagttgatc cagtttgagg acgattgcca
     1021 atacaatgat aatttactcc aacaaaagct aaattaaaat ttttaagcaa atactctacg
     1081 ataaatttta aatatacatc attacaatcc gcacccactc cttgcaccac aaacaccaag
     1141 gcttcaggtg ttttttcatc atcataccaa agcttaaatt caagctttga ttctcttttt
     1201 ataccaagct ctacatcatc acaagagtca atctcataag ctttactcac tatcattaca
     1261 ttccccctat taaaagataa gttttactcg ctaggttttt aaaattttca ttcttactta
     1321 aaatcacaca agctttatta ctagaagagc ttgtaaagtc tatattttct aaatcttcat
     1381 ggctttgatt ggctgcgttg atgatagcat ttttacttgc ttcattgctt gaaattccca
     1441 tgagtataaa atcagcttta tttataaaaa caagttttaa gcattcttta tcatcaccta
     1501 cgcgaaaatt tacttctttt ataccgttaa aattactaag atcaacattt tcaaccccgc
     1561 ttacattact catcgttttt atagagctta aatgatcatt ttttaaagta taaatgctta
     1621 tatcgttgat caaagtttta aggttattta aagacttact aacttcagct tcatccttac
     1681 ttgaactcat ttttggtaaa gcaatagcgg ctaaaattcc taaaataaca atcacaaaaa
     1741 caagttctaa tatggtaaaa gcttttttca tttatatcct tgaaaaattt ttatttttag
     1801 ggcttaaaat atcttcttct atgcttacaa attccttttt ttcataagca tcaaccgcag
     1861 ctcttgctat catcaaagca ttatcagagc agaattttaa aggagctagt tttaaattta
     1921 tattatattt ttgacataaa ttttgcaaac gcgaacgcaa gttaagattt gcactagctc
     1981 cacctacaac gccaaaattt ttaaatttat aaagattaaa aattttttct aatttatcca
     2041 tgatatgatc acaagctgta ttttcaaagg cataagctat ttctgctttt gtgtcttcat
     2101 ttaaattttc atgctttaaa atttccaaac gcactgcatt tttaagccct gaaaaactga
     2161 aagcaagttc tttagaatac tttaaaggta tattaaaaga gatattttta agtttggcgt
     2221 tttttgctaa attttctatg atgaccccac caggataacc taaattcatc attttagcca
     2281 ctttatcaaa actttctcca aagctatcat catttgtact tgctaaaggc tctaagtttg
     2341 catcatcttt aagataaagc accatagtat gcccaccact aacaagtaaa attcccatat
     2401 ctaaagaaat tttttcttcc aaaaaaagac tataaatatg acctttaaga tgatttatag
     2461 ggattaaggg taaatttaga gcacttgcta aggtttttgc catagaaatt ccactgagca
     2521 aagaaacgct aagcccaggt tcatttgtca cagctatggc acaaagattt ttaaaatgct
     2581 ctttgcattg cttaagtatc tttggcaaag cctcgctatg aagtcttgca gcaagttcag
     2641 gcaccactcc cccatagatg ctatgatcta attcttggga aattttttta tgaaatttac
     2701 attctaaggt atttttatca atgatagcta tagaactatc atcacaagaa ctttctatag
     2761 ctaggataag atttttcatt caaattccac taaaatagaa cctaagaatt tatcttttga
     2821 tcttgccatt ttaagagtat ttaaatccaa atttttagcg tttttgatca acttgctatt
     2881 gatatttgcc tctaaaagtt gttgcaaatt tgcacctctt aactcataaa attccactct
     2941 ataaatttta cctgccatgt ctaaagagta ttgtgtttgc atattttttt tatgaactaa
     3001 aataccactt tcatcttttc catgatcaaa gcctatgata tttacgcgca cattagctat
     3061 ctttggaata agaaaattct cttttacttt taccttggtt ccaaaaggaa ctgtggtttc
     3121 attgctatca acttgaaaag ttacttcatt aaaagcatcg ctaaattcta aatactcagg
     3181 atataatctt gtttgaaaac gattgccata ttggatataa aaagaatttc cttctgcgat
     3241 aacagccgta agttcattgc ttgtgttata atttaactct ttatttaccg gaaaaggcac
     3301 atagttgata acctttcttg gattttttaa agaaagtaaa attctatcat caaaaagttt
     3361 tacttcaagc tctttattta tggctttatc aactccttgc ggagtgagtt cgaaatctct
     3421 gctaaattca attcctgcag tttttaaata attttcaatt gccaaaagat gataataagc
     3481 tcttaaattt acaggcagat ttttacttgc ttcatttgca aaagcggctt tgtgatttga
     3541 aatcacaaaa taagttaaag ctttaagcat ttccgtatcg ccaagctctt gggttttggt
     3601 gtttttaaga tgataagcat gctttggatc agcaagcgaa gaattgacac tatttacggt
     3661 ttgagtggcg atattttcaa gatcagggta tttgcttgca ttgatttcgc ttgtatcaat
     3721 cacgcttgaa tttccccaac gcttaggatt ttgcatcgca tcgatataag tgggtttata
     3781 aaaaccccaa ccatcgtgaa gattgatcac catactaact tcaggaagta aaataagctc
     3841 tttaatgcgt tgaacggttt tataatcagg atcttttggg ctaatatttg caaatttacg
     3901 gtttaaatcc ccattattcc cacgagaacg cttgataatg ctatcaaaag ctaaatttgg
     3961 agccactata atcttaccct tagtgatatt ataatcactc aaaagcaaac ttgccgcatg
     4021 aaatccacca ggctcatcgc cttgaattcc accaaaaatt aaaactgtat tattatcatc
     4081 tagacttttt ccattttctc ctacgctaaa gtctagctct aaagcaaaaa tgcttgttat
     4141 aaaaaataaa attgttaaaa aaaatttcat tttaactcct taaatactct cttgttttaa
     4201 aatcatactc aaaaacttct tctatgcttg aaattttagg tactccaaaa tgatcaagag
     4261 ctttaaaaat gcatttagca atgtctaaaa atccactttt attttctaaa aaattataaa
     4321 caccaacttc attagcagca ttgatgataa cacctaaatt tggctctttt aaaaatgtat
     4381 ttttaagctt aaaaatagga tatttttttg tgctgattgg atgaaatttt aaagcaggca
     4441 ttttactaaa atcaacagcc tctaaaatag gcgtatcttg tttttcaaat atagcatctg
     4501 aaatagctag tttcatatct gcttttgaaa aatacgccgt gctagctcca tttttaaatt
     4561 cacacattgc atgcactaaa gatcttggtt ctattaaagc atcaatttct ttaaaatcat
     4621 ataaatgata agcctctata atctcaaaaa gcttatttgc catagtcgca ctatctatag
     4681 tgatctttgc tcccatgttc caattaggat gttttaaagc atctttgaca ctgacttgat
     4741 ttaaatcttt gattttatac ttataaaaag ctccgccgct tgctgtgata taaagttttg
     4801 ctatattttt tttaccttcg agtaaaaatt ttaaagctgc atgctcacta tcaacgggta
     4861 aaaatttagc ccctttcaaa aaactcccag ctactacaag actttctttg ttagctaaag
     4921 ctatgttttt gccaagctct ttagccttta aagtgctttt aagtcctgca aaacctacaa
     4981 tggcattgag taaaagctta tcttgacatt ctgttaaaat ttgctctaaa ccttcttgcc
     5041 ctataaaaac tctatcgtgt ttaactaaat gcttattttt tgaatctttt atggcaacaa
     5101 atttgggttt aaaccttgcg atttgctcat ttaaaagagc gatgttatcc ccacaagcta
     5161 aagcagaaat acgaatgttt tttaaagcag caagtttaag agcgtttact cctatgctgc
     5221 ccgtgcttcc aaaaagtatc ataaaagagt aaccatcaca aaagcagcaa tgatcaccgc
     5281 atcgatccta tcgagcacgc ccccatgacc agggataaga tctccactat cttttacacc
     5341 tgcttctctt ttaaaataac tctcaagcaa atctccaatc actgcaaaaa tcgctacaaa
     5401 aaacgaacaa agcaaagaaa gccaaaaact ataaacaaaa actcccaaaa tagttccaat
     5461 aacactcgca caaatcaagc cacctataac accttctaag gttttgtttg gacttgttag
     5521 agaaaaagga gttttaccca taagttttcc gataaaatac gccccactat cacaagctgc
     5581 aacgataatg ataagccaaa aaagtgcaaa cataccctga tctaaataca cttgccaaag
     5641 tgctaaaata ggcaaactag gataaatata aataagagct ggttttaagg aagccttttt
     5701 ataaaccaaa tatccaacga ctaataacaa agctaaaatc ccaaaaagca aagctttatg
     5761 cgataaactt cccaaaataa aagctatagc caaagggata atagagatat tttctaaagc
     5821 aaaaagtttt tttgcttcac taaaagatag atacaataaa accgcaaaaa cgataaaatt
     5881 gataaaaaat tgatcaatca acgcgataat aataatagcc cctatcatca caagagctga
     5941 aataattcta gttgtattaa acatattttt ccttatatac taatatctaa gcgatgaatg
     6001 ctttgtgcgt ctttaaaatt tggatcttta gactcatctt cttcattttt ctcatcatcg
     6061 ctggttttag cttcttgatt gtgttttttc tttttttctt cttgttcggc tttttctttg
     6121 atctcttctt tgatttcatg agtctcattg actttttcaa gcttgttcaa agttttttct
     6181 ttttcattaa attcagccat atttagcgta gctgcaaaac cttcttttgc aagctcattg
     6241 cttgcttgtg tagctggata agccatattc tgatttatat aattgatatt tcctaaaggg
     6301 ctaactggca ttttaatcct ttgtgatatt aatactttta aaatttgtat aatttacaaa
     6361 cgccttttgc tgaaccttaa caaaattttt taaggtataa tcgacccaat acgaaccttt
     6421 ctttaactta gaaaagctta cacaaagcct tgcagcaaat tctatcacat cgaggctgat
     6481 tttttgcttg tttgatacaa tcaaagtatg tgcgctagga atatccctta catgaagcca
     6541 caaatcatct tttttagcat ttttaagtaa aaattcattg cctttttcat ttttacccac
     6601 acaaatttta aactcgttaa aataaaaatt tgccacaaga tcttcttgtt tatgatcttg
     6661 attttttttg ctattttttt taggtagtaa aatttcaagc tctatctcac tcttagcttg
     6721 aagcaataat tctttcaaac tcaaggtaaa atctaacttt tcttttaaat tttgtctttg
     6781 tatgtttaaa tttttagctt tttgttctaa ttttttagca tttttataat ataaattagc
     6841 gctttgctta ggattaaatt caagcttaaa ttcaagctct ttgccttcaa aatcatcaag
     6901 cttaatttcc ctttcataat cttttaaaac actcaaattt gcaaacaata catcggccct
     6961 ttttctgtat tctaaagctt ttaagaataa agaattttct tcatctaaac tagaacaaag
     7021 ttcttgtaaa ttttgtattt ttttatccac ttgtgcaagt tttaaatttt ttatttgttt
     7081 gattttactc tcataaatgc ttgtaaattt gcgagaaaaa taatctgcaa agtctttaat
     7141 ttcctcaaaa ttttcatcca ttttataagg ctttaaagac tctaaaatca cattaggttt
     7201 tacaacacga taacttttat caatgtgtct taaagcctct atgatcaaat ctttttcatc
     7261 tgtaagaata acattggtat ttttacccgt aaattcaaaa taaattttgc tctcatagct
     7321 tttataagcc ttattagctt ttacactaaa acataaaata cgattgcctt caaggacttt
     7381 aacttccttt ataaaagcat tgctaaaata ctttttaagc ataaaatcaa aaggtgcatt
     7441 ataatttttt gcattaaatt tagctgtata aatcgcactc attgcacgag taagatcaaa
     7501 aataaatctt tctctatcaa agcttaattc caaaatattg tcattgatac gcttgataaa
     7561 atcgattttt ttaaaccgag
//
LOCUS       DARGEM010000076         7446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.076, whole genome shotgun sequence.
ACCESSION   DARGEM010000076 DARGEM010000000
VERSION     DARGEM010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.076"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1713)
                     /gene="tssF"
                     /locus_tag="SFZ78_001241"
     CDS             complement(<1..1713)
                     /gene="tssF"
                     /locus_tag="SFZ78_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEG8212108.1"
                     /translation="MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIER
                     IIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNL
                     IIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
                     KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNIEKIGL
                     NPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKP
                     FPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQ
                     VKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMD
                     ETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSV
                     LSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKK
                     GTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPAS
                     FGKKA"
     gene            complement(1710..2102)
                     /gene="tssE"
                     /locus_tag="SFZ78_001242"
     CDS             complement(1710..2102)
                     /gene="tssE"
                     /locus_tag="SFZ78_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HEG8212109.1"
                     /translation="MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCY
                     AVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFI
                     VKCFFQDDRFKEFNIEIIFKNNRYCEVK"
     gene            complement(2105..3559)
                     /gene="tssC"
                     /locus_tag="SFZ78_001243"
     CDS             complement(2105..3559)
                     /gene="tssC"
                     /locus_tag="SFZ78_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HEG8212110.1"
                     /translation="MANTKAVDMPIIEQIMEKSKYSKTDESYSIAKRGVAEFISEIVK
                     SDNAEEKINKFALDEMIAHIDYLLSKQMDEVLHNEEFQKLESTWRGLRFLVERTDFNE
                     NIKIDLFDIRKEEALEDFENNPDITQSVVYKNIYSSEYGQFGGEPVGAIIGDYQLGSA
                     SPDMTFLNKMASIAAMSHSPFLTSFGPKFFGLDDYSELANIQDLQGLLEGPQYTRWRT
                     FRENEDSKYTGLLVTRFLARSPYDPEENPIKSFNYKENVHASHNHLLWANSSYTFCTR
                     LTESFAKYRWCGNIIGPKSGGTVKDLPTYLYENFGTIQSKIPTEVLITDRREYELAEA
                     GFITLTLRRDSNNAAFFSANSPLKPKLFQNTPEGKEAETNYRLGTQLPYIFLISRLAH
                     YLKVLQREEIGSWKERSDIENGLNEWIRQYISDQENPPSEVRSRRPFRAAQVKVSDIP
                     GEPGWYKIGLSVRPHFKYMGGNFELSLVGKLDKE"
     gene            complement(3561..4046)
                     /gene="tssB"
                     /locus_tag="SFZ78_001244"
     CDS             complement(3561..4046)
                     /gene="tssB"
                     /locus_tag="SFZ78_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HEG8212111.1"
                     /translation="MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNE
                     TPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDS
                     LAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
                     N"
     gene            complement(4115..5362)
                     /locus_tag="SFZ78_001245"
     CDS             complement(4115..5362)
                     /locus_tag="SFZ78_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system domain-containing
                     protein"
                     /protein_id="HEG8212112.1"
                     /translation="MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYS
                     QFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLLFQHLKKLIDENNAYILAQKRKI
                     QNFIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPV
                     TQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPE
                     CNNEKITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKK
                     KKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKK
                     TDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVE
                     LMEKTLLKDYLAEEYENAKSKIK"
     gene            5488..5934
                     /gene="tssJ"
                     /locus_tag="SFZ78_001246"
     CDS             5488..5934
                     /gene="tssJ"
                     /locus_tag="SFZ78_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HEG8212113.1"
                     /translation="MFCKKSLFFLLPLFFCACSSVVSVKINNVENSNLNNRHDDVPVT
                     AIVYQLKDIKKFEEASDIDLATREEGVLGKDKLDSIKTQIAPKDNIIAVKVDEEEVPY
                     VGILVLFANNTKKTTKIWAKTEDANGFGKNKYLKFEISKEGIKRIK"
     gene            5944..7341
                     /gene="tssK"
                     /locus_tag="SFZ78_001247"
     CDS             5944..7341
                     /gene="tssK"
                     /locus_tag="SFZ78_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEG8212114.1"
                     /translation="MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYG
                     IIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINYESLIDSVVVLK
                     IPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQ
                     EKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKIS
                     TIRSFLEEIIFSINQHKKVLSNVFKGIDQTKNTLDFSTFLSLNLLKKWYLIFSHLSKK
                     DKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFLNMMNNLRLLFSKIT
                     SPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQ
                     SKIKNIVATQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLT
                     NNIKNPDIIMWAVFQ"
BASE COUNT         2590 a         1061 c          951 g         2844 t
ORIGIN      
        1 agcttttttt ccaaaagaag cagggtaatg taaaatttct tttgagtcga ggcatcttat
       61 ttttaactca caaaaggagt taatactagc aaaagaagct aaaaatttag atataatcaa
      121 tcccaataaa tatacctcgc ctaaagtgta aaacttcgaa tctttaatac taaaaatagc
      181 taaggtccct ttttttgtga tattttcatc tattaaataa gtgcttttac tttgaatatc
      241 gattatagat tcttgcaaaa gcttataaat cttccaattt gattgattat ctaaaaagct
      301 atagctttcc aacacaccaa aaaaagcttt tttgctcaat attgtttgat atgaaaaaga
      361 taacacagaa acaagcttcc ataataaatt accatcaaca ctacatcttc ttgtttcgct
      421 tggaatttcc acatttttgg tatcgacacc ttttagatcg caggtattaa tatcacctat
      481 ttttaatttt gaaggtaaat ctccattgga gcacaaaaga tcaatactta tagtttcatc
      541 cattatataa gaggaaaaga aagaaatttc gctaaatact tctcctttgg aattcttttt
      601 agtatttacg ctataaaaat ccttttgatt atcttttaaa aattcaaagc gttcaaaact
      661 tttatagttt tttaataacc ttttgccgcc ttcactatta tgtgctttaa cctgtagtgt
      721 ctgtatgatt tcgtaagctt taggttggct tctatccaca aaaattctat aactatcttt
      781 tttgtgatta tttataagag gttctgcact ttttgtaaag atattgataa taggtgtcat
      841 gcttaaagaa agtaattctt ttctaaaaat acaatttgca ggaaatggtt tagagaattt
      901 aaattcaata ttaattgtct ttccttgaca attatttaaa atatccaaac cattgattct
      961 taaaaaatta aatttatgtg gcatgaaaaa atattctctt agtaaggaaa atgcttcaaa
     1021 acctaaatca ttataagata aactactttc atctggattc aatcctattt tttcaatatt
     1081 ataggtatta agaaaaaatt cttcatcagt atctaaactt tgaattttta attcttttaa
     1141 ataagaatgc atgtataata ataaagtact agacatatag gtatcattgc ctagatataa
     1201 attaattttt tccaaaccca aatcacatat ttttgtttct gccttattga cttgcaaagt
     1261 taaattgaaa gtataatctt gatttttact agatataaaa acttcgctga tggagataga
     1321 ataaagataa acatcatata ctgttttaaa ttcacaaaca catttgtcta ttggttttga
     1381 tttaataaga gttcctttgg gaataattaa gttattttct ttactatttt gttcaaattt
     1441 aaattcttgc atgcataaag aaggtaaagg atttgtataa tttggagaaa caatattaat
     1501 caaagattct gcaatgtgtg gtatattttc atcaagctct tgatggattt tagagcttaa
     1561 aatagctaaa ttttcaataa ttctttctat atcaggatct ttgctatcat atgccaaaaa
     1621 tggtgttaac tttggataat tttttataaa atactctctt ttttcatata gatattcaag
     1681 ctctttttga taataaaaaa tattatcctt catttaacct cgcaatatct attgttttta
     1741 aagatgattt ctatattaaa ttctttaaaa cgatcatcct gaaaaaaaca ttttacaata
     1801 aaagaaagtt gccaaggact taaattatta tcataagtga tagaaactac acatattctt
     1861 ttttcatagt tatcaattag ttttcttatt tccttggcca ttgatacgca taattcatta
     1921 gagttaagat taatatcagc catattaggc attcctaaat tttttacagc ataacaatca
     1981 ttaatttttg cattgagcaa aacctttata ttgtttttta catcctcaaa atcattttga
     2041 tagaatggaa tatgaatgtt ttgctcatct aaattatgga ttagtttatc tagcaaggac
     2101 attattattc tttatctaat tttcctacta aagaaagttc aaaattacca cccatatatt
     2161 taaaatgagg tcggacactt agccctattt tataccatcc tggctctcct ggtatatcac
     2221 taactttcac ttgtgctgct ctaaatggac gacgacttct tacttcagaa ggtggatttt
     2281 cttgatcgga aatatattgt ctaatccatt cattaagtcc attttcaata tcgcttcttt
     2341 ctttccagct ccctatttct tctcgttgta aaacctttaa atagtgcgcc aatcttgaaa
     2401 ttaaaaagat atatggaagt tgagttccta atctgtaatt tgtttcagct tctttacctt
     2461 ctggggtatt ttgaaataat tttggtttta acggagaatt tgctgaaaaa aatgctgcat
     2521 tattactatc tcttcttaat gttaaggtta taaaacctgc ttcagcaagt tcatactctc
     2581 tcctatctgt aatcaaaact tctgtaggta tttttgattg tatagttcca aaattttcat
     2641 aaagataagt aggcagatcc ttaacagtcc ctccactttt tggtcctata atatttccac
     2701 accatctata tttagcaaag ctttctgtta atcttgtaca aaaagtatac gaagaattag
     2761 cccacaataa atgattatgc gaagcatgaa cattttcttt atagttaaag cttttaatag
     2821 ggttttcttc aggatcataa gggcttcttg ctaaaaatct tgtcactagt aagcctgtat
     2881 atttagagtc ttcattttct ctaaaagttc tccaccttgt atattgagga ccttctagca
     2941 aaccttgcaa atcttgaata tttgcaagtt cagaataatc atcaagccca aaaaattttg
     3001 gtccaaaaga tgttaaaaag ggagaatgac tcatagccgc aatactagcc attttattta
     3061 aaaaagtcat atcaggactt gctgatccaa gttgataatc tccaatgatt gctcctacag
     3121 gctctcctcc aaattgtcca tattctgaag aatatatatt tttataaaca acgctttgtg
     3181 ttatatctgg attgttttca aaatcctcta aagcttcttc ttttcttata tcaaataggt
     3241 caatttttat attttcatta aaatcagttc tttcaactag aaatctaagt ccacgccaag
     3301 tagattcaag tttttgaaat tcttcattat gtaaaacttc atccatttgt tttgagagta
     3361 aataatcaat atgggctatc atttcatcaa gtgcaaattt attgattttt tcttcagcat
     3421 tgtcgctttt tacaatttct gaaataaatt cagcaacacc tcttttagca atactataac
     3481 tttcatcggt tttagagtat ttgcttttct ccataatttg ttcaataatt ggcatatcaa
     3541 ctgctttagt atttgccatc ttaatttcct tgctcttctt gtttaatttc taaaagtaat
     3601 ttttctttag ttttttcatt ttttaacgct tctaaaacag cttttctaaa atcaggaata
     3661 ttacccatag gaccttttaa agccattaat gcttctctta gctgcaataa tttgtttagc
     3721 tcgggtattt gtttagctaa gctatctgga gaaaaatcct tcatactagc aatattgagc
     3781 ttaacatcaa gttcttcagc tcctgttcca agagtgtttt ttacgctaaa acttgttgtt
     3841 atattgagtt ttctcatgac ttgatcaaaa ttaatcttat taatttgcaa aatttctctt
     3901 tcctctaaag gagtttcgtt ttttcctttt aaatttgcca ttaccattaa ttttaacggc
     3961 aactccacat cctcattttg tccattagtt ttagctttat atgtaatatt aattcgctct
     4021 tttggagcat aagatccatc tgacatttaa aatccttaaa aacaaaattt ttagtttaat
     4081 aattatatta aaatttacta aatttaatct tgtatcactt aattttactt tttgcgtttt
     4141 cgtattcttc ggctagataa tcttttagta gagttttctc cattaactct actaagtata
     4201 tatttaaaat tttagagttc tttttcattc cttttgactc aaaaattttt accatatcta
     4261 gcaaggaatt aatattattc ataatagaat tattaaaatt ttctttatca atattcatca
     4321 gcatttgctc aaaatcttgt agtgtatgtt ctttgtcagt ttttttactt gaaaaaaaac
     4381 tttttttatt ttctttggat ttaacaaaat atttataaac ttcttctttg cagataaaat
     4441 caccattttg aaaacggaga agttcaatag tatcaaattt agaaataaaa tcacttgtta
     4501 atattataag aatgtctaat tgtttatttt ttttcttttt ttctaaaaaa tcacaaaaga
     4561 gttgtacacc ctctatccaa aaaggattta aaataagttc atgcataaaa catttaatat
     4621 gttctatatc attttcttta tcagaaagta atatgcgaat tatatctgca tcaggttttc
     4681 ttattttagt aattttttca ttattacatt caggcaaaca cctgattttt ccccacattg
     4741 cttgggtgaa taaagcgtag atattgagat tattttcatc ctcttccaaa agctcaaatg
     4801 caagtttttg ataaaaattt ttatattctc tctcgtttaa agagttaata ttatcgcttc
     4861 taatgtttac agatacttga gttacaggag attttggaag ttgtggtgca acttgagcaa
     4921 tttcaatttt tgcaaaattg caagatagta aattttcaaa ttcggaaaat aaagtaataa
     4981 attgattaac aatctcagat gatataagca cttttgtttt attgtattct tgaataaaat
     5041 tttgaataaa attttgaatt tttcgctttt gagctaatat ataagcatta ttttcatcta
     5101 taagtttttt taaatgttga aaaagaagca aaagcttttc aaagcattct tcattgttta
     5161 aattaaaaca cgataaaaga aaatagttgc aaattttaaa atctaaagaa tgatttaata
     5221 atataaactg agaatattga taaactttat cccaagaaat attttcatgg tttaaagtct
     5281 tatattttga catctcatct tcaagtaact gaaattcttg tagttcatct aaattatttt
     5341 tcaattgatc acaaaaatac atttaattcc tccaaaaatt tgcctcatta taattaaatt
     5401 ttaaaaaata ttatgttaat tttttaaaaa atttactcaa ttaatcataa attatatatt
     5461 ctaagataga aaggatactt tagtttcatg ttttgtaaaa aaagcttatt ttttttattg
     5521 ccactattct tttgcgcttg ctcaagtgtt gttagtgtta agataaataa tgtagagaat
     5581 tccaatctta ataatagaca tgatgatgtt cctgttacgg ctattgtata tcaacttaag
     5641 gatattaaaa aatttgaaga agcaagtgat atagatttgg ctactagaga agagggggta
     5701 ctaggcaagg ataaacttga ttctattaaa acgcaaattg cacctaaaga caatattatc
     5761 gcggttaaag tagatgaaga agaggttcct tatgtaggca ttcttgtatt atttgcaaat
     5821 aatacaaaaa aaacaacaaa aatatgggca aagaccgaag atgcaaatgg gtttgggaag
     5881 aataagtatt taaaatttga aatatccaaa gaaggtatca aaagaattaa ataggaataa
     5941 tatatggcaa ataaattaaa agttgcttgg tttgatggac ttaatattgg acaaacccat
     6001 tttgagcagc aagaaagatt ttttaataga aatatagatc ttaaaactat aaatatatat
     6061 agtaatttat atggaataat agacttggaa ttttctcaag agatgttatt gcaaggaaaa
     6121 attgcacttt ctaaaatttc aggtatcgca caagatggaa gcatttttaa tgcacctgag
     6181 caagatttgt tgcctgagcc tattgaaatc aattatgaat ctttaattga ttcagttgtg
     6241 gtattaaaaa ttcctatcgg agttactgat attgctgatt tatctttaag aaatactttt
     6301 ccaaattcaa agtttatatg tcttagaaat agtattgctt taagaaatta tgatgattca
     6361 aaatctaatg taatggacaa aattgaagat gagtacgaac ttgaaaatct gacttttaca
     6421 caagagaaaa aagatttact tcttgctagt ttaagattaa aacttggcat tttaggtaat
     6481 tcaactcctg atgaacttga attaccaatt gcaaaaatta aaaatattga tatcaataaa
     6541 aaaattgaat tagaaagtga ttttataccc acttgcttaa atatcagcaa aatatctacc
     6601 ataagatcct ttttggaaga aattattttt tcaatcaatc aacataaaaa agttctatct
     6661 aatgttttta aaggaatcga tcaaacaaaa aatacattgg attttagcac ttttttatcc
     6721 cttaatcttt taaaaaaatg gtatttaata ttttcacatc tatcaaaaaa agataaaata
     6781 catcctgaat ttttatacga aaaattttta gaatttcaag gagagcttgc agcttttagc
     6841 aacgaagaat cttttttaga ttttattcct tataaacacg ataatcttta taatactttt
     6901 ttaaatatga tgaataatct aagattgtta ttttctaaaa tcacaagccc taaatatttt
     6961 atagctaaga ccagtattaa cggcaatggt ttttatgatt ttatttttga taattcggga
     7021 attttagaag aaagtgaaat ttatttcgca atccgtgcag atgttactac agaatatcta
     7081 cttaataatt ttaaaattca aagcaagata catactcaaa gtaaaattaa aaatatagtc
     7141 gcaactcagc ttgagggctt aaatgtagat caagtaccta atgttccatc tagcattcct
     7201 tatttaaatg gttatgttta ttataaatta gataaaagag atcaactgtt taaagatttt
     7261 aaaaatgaaa gtatcattag tatgtacttg accaacaata taaaaaaccc tgatattata
     7321 atgtgggcgg tatttcaatg aaagaaataa atgaagaaaa aaaggcatta agcttacttc
     7381 ttgattcaga ttttgatggt ttaaaaaaca ataaaattat tgattattct ttggagttgc
     7441 ttttgc
//
LOCUS       DARGEM010000077         7413 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.077, whole genome shotgun sequence.
ACCESSION   DARGEM010000077 DARGEM010000000
VERSION     DARGEM010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7413
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.077"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..585)
                     /locus_tag="SFZ78_001248"
     CDS             complement(<1..585)
                     /locus_tag="SFZ78_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8212115.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQ"
     gene            complement(578..1288)
                     /locus_tag="SFZ78_001249"
     CDS             complement(578..1288)
                     /locus_tag="SFZ78_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8212116.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLNEFLRYYNA"
     gene            complement(1285..2079)
                     /locus_tag="SFZ78_001250"
     CDS             complement(1285..2079)
                     /locus_tag="SFZ78_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212117.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPCLTPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSNAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2066..3010)
                     /locus_tag="SFZ78_001251"
     CDS             complement(2066..3010)
                     /locus_tag="SFZ78_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212118.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3010..4545)
                     /locus_tag="SFZ78_001252"
     CDS             complement(3010..4545)
                     /locus_tag="SFZ78_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8212119.1"
                     /translation="MLRWFVLLFLLFFNLEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKDPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKYVFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIIKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4655..7387)
                     /locus_tag="SFZ78_001253"
     CDS             complement(4655..7387)
                     /locus_tag="SFZ78_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000392313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEG8212120.1"
                     /translation="MFKDRIFNDYARCYAYGIDASCYFYIPKIVIIAKNEDEIKQIIQ
                     LANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDASEITLGCGVVGIHA
                     NESLAFLKKKIGPDPATINSALIGGIVNNNSSGMCCGTKDNSYKTLRSIRVILANGSM
                     LDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFKIKNTTGYSLNAFV
                     DYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFDNINNAANTIKEFA
                     KVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEHSNELKLDENINKI
                     KEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVITEDVCFNIEDLADG
                     IKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNFSNLVKEMSNIVAS
                     YGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFNPDVIISDDKDIYK
                     KNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREIKRLESLNDDESKA
                     KLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNIGFISKILGNLAYK
                     NHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYLPKVNDYELKSHKR
                     ACNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYAPNDLCCGKAYENF
                     QDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDLSEYLLKFIVPKLR
                     IDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYCCGFAGYKGFFKPQ
                     LNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAYLLDECSEAI"
BASE COUNT         2749 a         1343 c          818 g         2503 t
ORIGIN      
        1 ttgctgatag tcatataaaa aagttaaaat ttctttagaa gttttaatat caagtgctga
       61 agtaatttca tctaaaatca acaatttagg atttaaaacc aaagcacgga taagacctac
      121 acgcgtggct tctcctccac ttaactcata gggtttttgt tttaaaattt gcttttttag
      181 actaaaaaaa tcaaaaaatt ctaaaatcaa gtcatcattc ttttgtaaat taaaattttc
      241 caaaccatct tgtataagat ttttgatttt tttataaggg tttaaagcca ttttttgatc
      301 ttgaaagcaa tactgaattt gctttcttaa aagtctttgt ttgtttttat caagcttgtg
      361 taagttaaga ttttcatacc atacctcacc ctcacttgga tcttctaaaa aacaaagaat
      421 tctagctaat gtgcttttac ccgcaccact tttacctaaa attattaaat tgtcattttc
      481 atttaaagaa aaattgatat tatcaaaaat aatatgtctt tcttttttta aataccaatg
      541 ctttttaagc tcataaaact tacttaaatt acaaacttta agcattataa taccttaaaa
      601 actcatttaa gctatataaa tttgaactat ttttttctag cataagaatt tcatctgcta
      661 aagaatttac caaatttaaa tcatgagtga tgcaaactaa ggctgtagta ttttttaatt
      721 cttttaaaat cgatataatc ttagaagcgt tttctttatc caaagaagct gtgatttcat
      781 cacaaattaa aatttggggt tgatttaata atgccaaagc taggctcacc cttcttgcca
      841 tacccaaact taattcatta gcataagaat gccacaaacg atcaagattt tcaaatccta
      901 atttttgaaa ataagaaaaa gcgtaatctt ttctttcttt ttgttttaat tttgtatgag
      961 tttttaaaac aagatgacat aaatttccaa tatccaaata aggataaaga ctaagctctg
     1021 catcttgcaa aacaagtgcc accttagaac gaaaatttct aagttcttct ttattaaaat
     1081 taaaaataca agaattatga aaacttaatt catcaaaact tattgtgaaa ttagaatcta
     1141 aaagtcttac caaagctttt cccaacaaac ttttacccac tccactttgt cctagtatca
     1201 ttaaagtttt gcctgttttt atatctaaat taatatcctt aagcaataaa ttattcttca
     1261 aactgatatt taaatttctt accttcaaga tcttataccc caaatttttt gtaaaaaatt
     1321 acccaaccat aaaagaggta aaaacaacaa aagcaagctt aaaagtggaa aaagtatcat
     1381 ccaccaagcg cctataaaaa ctgcgtttga agactcactc aaaagagtac ctaaagttgg
     1441 aatttcaaat cctaaaccca gtccaaaaaa actcaaagta gcttctgtgg ctatagcatg
     1501 aacgatatta aatataaaaa gtgtaaaaat cagtgttttt aaagcaggta ttaaatcttt
     1561 aaaaaaagct ctaaatttag ttcttccaag cactatattt gctttgtaaa aatctaaatt
     1621 ttcaagtctt tttaattcac tttctataat tcttgctatg aaacaccaat gaattaaagc
     1681 gattaaaaaa atcatcaaaa acacatcaga agttatcata ctttgaaaaa acatcataag
     1741 taaaaaagca ggcaaggcta aaaaaaactc taaaatacgc atccaaaaaa cataaaaaaa
     1801 acatcgcgct aaaaacaaat aacacaaagc aaagataata gacaataaag atccaccaac
     1861 acctataatc aaagaatttc tcaaagcaaa aagcaaacga gaaaacaaat ccctgcctaa
     1921 aaaatcagtc cctaaaatat aagtaaaatt aggagcttga tgcaaatttt ctaaatgagt
     1981 acttaaaata tcaaaaggag tcaaacaagg tgcaaacaag gcacataaaa ataaaaaaat
     2041 taaaggcgca agaatgataa gaaatttaaa caaaatcaag ccttcttaat ctaggattta
     2101 aaatcctagc tacaatatca cttaaaaatg taaaaaatgc tgcaagcaaa acgctaaaaa
     2161 atataagtgc aagtacaaca ggataatctt taaaaataat acttttaaaa agtaaagacc
     2221 caagtccctc gtaagcaaag acactttcta ccacataagt tcccatcata aaacttaaag
     2281 cacttccccc aaaataagcc acaatagggc ttaaagaata tttcagaact aaaaaataaa
     2341 tatctttctc ccttaaagct ctagcgtata aattttgaat aaaaatttga gaaaaacttt
     2401 cattgataaa atttctagca atccttaaaa ataacgccaa atgtgataaa acgagcacca
     2461 aaacaggcaa aatcaaatgc tctaaacgat ttaaaaaatc atcttcaaag cctatatcac
     2521 tacttcccat aacaggcaaa attttccaaa aaattccaaa aatcaaaaca aacaataaag
     2581 ccaaaacaaa aggaggtaaa gcaaaaaaat taaaagctaa aaaagtgatg attttatcta
     2641 taaaactttc tttataataa tatcccaaaa gtgccaaaaa aacactgagt aaaaataaaa
     2701 gcattaaggc actaaaaccc aaaataaaag tattaaaaat tctttctttt ataagcttta
     2761 aaacactttc tccacttaaa aaagaaactc ctaaatctcc ttttaaagcc ttaaaaagcc
     2821 aaattttata ctgctctagc aaaggcttat caagccctaa attttgttct attctttgaa
     2881 caaattcttt actttgtgaa ttaactccat tagcataagc tatactgcct ttactaaaat
     2941 aaagtaaaac aaaacataaa aaagtgctaa aaaatgctat gaaaatacta aaaactaagc
     3001 gttttagcac tatttactcc actcataaac attccaagta aaacccactc cgtgatgacc
     3061 taaagtcctt gctttgatac cttttaaatc tttattataa actaaagcaa aatcaagata
     3121 agctaaaaaa ataaaagggg gattttcata caaagcatct ataaaatctt tataatattt
     3181 ttttctctct tctaaatttg aagtatttct tgctttttgc aaggctatat ccactttttt
     3241 atcatgataa tgtccaaaat tccaaccctc atcatttaaa gcactatctt gcgaactttc
     3301 aaatacccta aaagtgtgaa aatcaggatc taaaggactt ccccagccta ttaaaaaact
     3361 atctacttta gaataatcaa aacttccagc aggtttagcc accaccttgc ttacaactcc
     3421 tatttttcta aattcgcttt gcaaaattcc agccaaactt acccttaaag gatcattact
     3481 catcgcccaa atttcaaatt ctaaaatttt cccatctttt tcaaaatttc catctttatt
     3541 tttcttaaaa cctgcactta caagcaagtc ctcggctttt ttaggatcat atttgtaaat
     3601 tttaaaattc ttagaatttg cccaagaacg ctctaaaggg tgattggcta caaaagcata
     3661 atcatgtaaa agatttttta ttatactttc tttatcaact gcgtaattta aggcttgtct
     3721 tacttttaaa tcttttaaaa attcattatc aaaattaaac attaaagccc gataatcagc
     3781 cgatttttca cgtaaaattc caaaattttc atcattttta aaaatattta gcaaagaaac
     3841 atcgattaaa gctgcgtcta tcttgccatt tttaagctgg gcactagcta tagaaggatc
     3901 aaaaacgtat tttataataa gtcttggagt ttttacctta tcaagataaa aatgttcatt
     3961 ggctttaaat tcaacatatt cacctttttt ccattttaca aatttataag gacctgtacc
     4021 tataggattt tgattaaaag agcttgtgtt taaattctca ttttcaagca aatgtttagg
     4081 aagcatacct atgcttaaag catctaaaaa tgcaggataa ggtttaaaaa gtgtgatttt
     4141 cacatgagaa ggatttaaaa tttccacact tttaatgtct tcaaaattga cataaacaga
     4201 agaattgttt ttaggatctt taaaggcttc tatactaaat ttcacatcat cagcactaaa
     4261 tttgactcca tcatgccata aaacatcatc tcttaaaaaa atatcataaa caagcccgtc
     4321 tttactaaca tcccaagact tagccaaatc aggttttaaa ctcatatttt catcaaaacg
     4381 cgtaagccct gaaaatacaa gattaatcac tgcatcatga tcctcactat aagcaggatt
     4441 tatccttgaa atttcatttt ccacagctac gattaaagta tcttttggaa ttttagcctc
     4501 aagattgaaa aacaataaaa atagtaaaac aaaccatcta agcacttgta actcctcaaa
     4561 tttaaaattt taaagaatta taaaataaaa aataagaagc cacaagccct atggggggat
     4621 aatttgcttt aaattatgga gttttattta tcaattaaat tgcttcactg cattcatcca
     4681 ataaatacgc tatatgctgc caagatatac ccgtagcatc gcttaatcct atctcgcaag
     4741 tgcttgatgt actaaacccg cgcttaatat ttgttttggc ataaaatttt ttaaagccct
     4801 ttgtagcact aatatttaat tgaggcttga aaaagccctt gtatccagca aacccacaac
     4861 aataggtatc attatctatt aatacttttc cattcgtaca tagctttgca agcttaatta
     4921 tattttcatt taaaccaagc tttctagcag cacacatgat atataatcct acattctcat
     4981 tgattttatc aatgcgtaac ttaggaacaa taaattttaa taaatactcg cttaaatcat
     5041 aaatttcata ctttgaatga tcactaatta acttagcact acaagcacta tgatctaaca
     5101 ctatgggtga gtctatattg cttaaaaagt cattgatttt ttgtatattt ttatcttgaa
     5161 tatcttgaaa attctcataa gccttaccac aacataaatc attgggtgca taaataatgc
     5221 ctatatttgc ttttttacac aagctctcaa atacttcttg caaacttctt ttatcatgca
     5281 ttttttcatt tggtttaaag cttttattaa gacagcttgt aaaataaacc acattgcaag
     5341 ctcttttatg actttttagc tcataatcat tcaccttagg caaatacgcc ctagttcttg
     5401 gtataatgct aagaaaattg cttgcttttt caagcttatt atcaagactt aaattatcaa
     5461 atttatttgc gatacttaat gaaaatttag caatttttag agttttttca tgatttttat
     5521 atgctagatt tcctaaaatt ttagatataa atcctatatt attttttcta tattttaatg
     5581 aaaaatcagc aaaattaatc cccaaaggac atgaaaaaga gcacactcca caagcagcac
     5641 aagagctgtc tactaaatga ttgtaatatt ttttaatatc ctttaatttt gcttttgact
     5701 catcatcatt taagctttca aggcgtttaa tctctcgtaa gatcgcaatt ctttgtcttg
     5761 gagtaattgt atattcattt gatggacaaa atctttcgca aaatccacat tccatacagg
     5821 tatttaattt ctcatcaatc caactgactt gtttgatatt tttcttataa atatctttat
     5881 catcgctaat gattacatcg ggattaaata aactatcctt atcaaagata cttttgattt
     5941 ttttattgat caaataagct tgcttacccc actctacctc cacaaaaggt gccaccatac
     6001 gccctgtgcc gtgttcagct tttatacttc caccataaga agctactata ttagacattt
     6061 ctttaactag atttgaaaaa ttatcaaatt caagcttatt gtttaaatcc ggtgtgataa
     6121 taaaatggat attgcctgct aatgcatggc caaaaatgat tccattatca ccaaagccat
     6181 atttataaaa caattcttga atgcttttaa ttccatcggc taaatcctcg atattaaaac
     6241 acacatcttc agtaattacc gttgaacctg cctttctaag actagctgct ataggcaaga
     6301 gtgcttttct aatcttccac cataaatcat attcggcctt attcttgcta aaatatgact
     6361 tataagccag tttggaaatt tcttttattt tatttatatt ttcatcaagc ttaagctcat
     6421 tactatgctc actttggatc aatacacaag tattaccctc tttaatatca gctaaaatat
     6481 ctcttaactc atcataagtt gatgcagctt ttaaacttgc atagtccatt atttcagcag
     6541 aacttacaaa atcaacttta gcaaattctt ttatagtgtt tgcagcatta ttgatattat
     6601 caaaaaacaa taaagcacag gccttaaatt ccaaatcatc caaaacagca agcttaactt
     6661 cgcttacaaa tcccaaagtc ccttcagagc caataagcaa gtgtgctaaa atatctattt
     6721 catcatcata atcaacaaag gcattaaggc tataacctgt ggtgtttttg attttaaatt
     6781 ttttgattat taaatctttt aattctttat tggcattaat ctcttctttg atctctctaa
     6841 gttcattaat taatttttta ttttcatctt taaatcgagc cacgcttaaa gcatcactgg
     6901 tatcaagcat actaccattt gccaaaatca ccctaatact tcttaaggtt ttatagctat
     6961 tatccttagt tccgcagcac attccgcttg aattgttatt tacaatccct ccaattaaag
     7021 ctgaatttat agtagctgga tcaggtccta tttttttctt caaaaaagca agactttcat
     7081 tagcatgaat gcctactaca ccacatccta aagtaatttc gctagcgtct ttgttaattt
     7141 ttattttttt aaaggcaaat ttaatcacta caagtactcc atcacaagag ctttgtccac
     7201 ttaaacttgt acctgctgct ctaaatgtta taggagtttt ataagtattt gctaattgaa
     7261 taatttgctt aatttcatct tcatttttag caataatcac tatttttgga atataaaaat
     7321 aacacgacgc atcaatgcca taagcatagc atctagcata atcattaaaa attctatcct
     7381 taaaaatata cttagcctca ttataaaaag ctt
//
LOCUS       DARGEM010000078         7117 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.078, whole genome shotgun sequence.
ACCESSION   DARGEM010000078 DARGEM010000000
VERSION     DARGEM010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7117
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.078"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(49..1014)
                     /locus_tag="SFZ78_001254"
     CDS             complement(49..1014)
                     /locus_tag="SFZ78_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEG8212121.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTHASDFLSTGSLFSEKKLLEIKTSKKIPIKDLKILVELCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLRVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKINGKIDFKELLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNPKLVKKEFLISNLLKLARILKN"
     gene            complement(1007..2941)
                     /locus_tag="SFZ78_001255"
     CDS             complement(1007..2941)
                     /locus_tag="SFZ78_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG8212122.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTVLKIEN
                     ENNNIIEVLGHIDDESIDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADTRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTHANLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            3060..4082
                     /gene="ilvC"
                     /locus_tag="SFZ78_001256"
     CDS             3060..4082
                     /gene="ilvC"
                     /locus_tag="SFZ78_001256"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG8212123.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            4086..5168
                     /locus_tag="SFZ78_001257"
     CDS             4086..5168
                     /locus_tag="SFZ78_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8212124.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQLESAVKLTQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            5158..5931
                     /locus_tag="SFZ78_001258"
     CDS             5158..5931
                     /locus_tag="SFZ78_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG8212125.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            5928..6311
                     /gene="ruvX"
                     /locus_tag="SFZ78_001259"
     CDS             5928..6311
                     /gene="ruvX"
                     /locus_tag="SFZ78_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG8212126.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            6340..>7117
                     /locus_tag="SFZ78_001260"
     CDS             6340..>7117
                     /locus_tag="SFZ78_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG8212127.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCR"
BASE COUNT         2477 a          946 c         1204 g         2490 t
ORIGIN      
        1 ttattttaat acgattaaaa agaagtgaag aggattgaag agtaaaaatt aattttttaa
       61 aatccttgca agtttaagta aatttgaaat caaaaattct ttttttacga gtttaggatt
      121 ggttttaagt tcgtattcgc ttttaagcaa aagagtgaaa atttctttat attgttcgat
      181 ttttaaacta aaggcttgag agcttaaatt ttgtcccact tgagggggtg gagtgtagcc
      241 taaaagctct ttaaaatcaa ttttaccatt gattttagca taaagtgcaa ttttaaataa
      301 acgataaaaa gagttatata aagagttgat taaagcaatt tcattaaaat tatctaaaat
      361 tttttcaagt tcgcttttaa agtcttgttt ttttaaaatt ttatcaaaaa agctttcaaa
      421 acttcctgta tttaaactat agcagtattg ttctatggtt ttttcatcta ctcttaaacc
      481 actaaattta ttaagctcac tcgcagcaag atacaagttt tcatcaaaac ttgtaaaaag
      541 agtaaataaa gcattttgag tgatttcaac ccttagttgt tttgctttta tgcttaaaag
      601 ctccacgcct tctttagctc cgttagcttt aaaaaatctt acaaaatgag gagagaaaat
      661 tttttctatg tcgctttgtt tagaactttc atcataaagc tctaaaagaa agaaattgtc
      721 cgcattgttt ttacaaagtt cgactaaaat tttaagatct tttattggaa tttttttaga
      781 agttttaatt tctagtaatt ttttttcgct aaaaagcgat cctgtgctta aaaaatcact
      841 tgcatgagtg aagttgtatt cttcaaaaaa aagttttaaa gtttcatcgg gcttatattt
      901 ttcttttata aattcagcat aaagttcgct ttgaaaatta tctgctccat aaagaaagaa
      961 aaaattaggt attgaatctt tagaaagcag ggtttggagc tcttttctat acattttctt
     1021 cctttataag tctttgggtg attttagcat aaatttttgc cataactata tccgcttcca
     1081 tgatttgcac ttcaacattt tctagtaaat tcgcatgcgt atcataaagg attatatccg
     1141 ctcctttgat ttcatcatct agtttagcta tgcaaactcc gtcattttgc acaactaaag
     1201 ctttaaattt tttgcctata tttttagctg cccatctagc aaattttcta tccataaaat
     1261 caaaagcaac cttatccgcc tctctttcaa gtgtgctaag attctcgcaa gtgctttcta
     1321 tgtttaaaag tagataatta aaaagttttt catcgttttt ttgtttggct tttaaaagtc
     1381 tgtgtaaaat aagatcagaa taccttctta tagggcttgt aaaatgtgag tatttatcaa
     1441 aacctaagcc aaaatgcccc gcatttacgc tagagtattc cgcttttttt tgtgctttga
     1501 tgatgagttt atctacttct gctcttaaat ttaattcatc agctaaagct tgtatgtcgc
     1561 gtatgagctc aggaagattg ggtttaaaat ttacatcgat tccgagttcg cgtaattcat
     1621 ttaaaagctt atcgattttt cttgtatcag cacttaagtg atttctaaaa acgcctatat
     1681 ctatgagttt tgctgcggct ttattggcta aaagcataca atcttcgatc aaattatgcg
     1741 aaggcgtgtc tttttcaaaa actgtgcttt ttagacttaa attttcatct aaattcattc
     1801 ttaattcttc ggtgcgaaat tcaaaggcat ttttaagacg cattttgcgt aaattttttg
     1861 tgatttcaaa aagctcataa agccatgaaa gttcttttaa atcaggtttt tgtaccaaaa
     1921 tttcatcaac ttcatcgtaa ttaaaacggc gttttgagtt gataatacct tcaaaaagtt
     1981 cttctttgat gactttattt tcatgatcga gtgtgatttt aaaacaatac gctaagcgat
     2041 ctaaatgagg ttttaaagaa cagatatttt cacttaaagg atgcggtaac ataggtatag
     2101 caatgtgcgg aaaataaata gaaaatccac gatttcttgc ttctttatct atagcactat
     2161 aagcataaac atattcgcta acatcagcaa tagctacata aatttctcgt ttttgagtgt
     2221 caaaataaat cgcatcatca aaatcttttg catgtatagg atctatagtg caaaaaggca
     2281 aggctcttaa atccatgcga ttttcataca tactcgcatc aacactatcg ccgtttgcta
     2341 gggcttcttt gatacaagcg tcgctaaatt cgttgttttt attgaaaagg gctaaagaga
     2401 ttttttcatc tatactttca tcatcaatat gccctaaaac ttctatgata ttgttatttt
     2461 cattttctat ttttaaaact gttcctaaag gtagtgcttt taaggatttt tgagaagctt
     2521 ttaaggcggt gcttaatcct gttttgatat tcattccaag tacggcttcg ccataccttt
     2581 tggtgatcac taaagaggtt tcattggctc tttttagaac caaaatcacc tttgcactgg
     2641 ggcgtttttt ctttaaaggt agaagtttta ctgcaactat atctttatag tttgcacctt
     2701 ttaggttttt gttttctatc aaaagatctt ttttaaaact ttcatcaaag cattgtaaaa
     2761 aacctgtacc tttgctcgaa atatcaagca ccccaaaggc aaaaccattg ttaagatagt
     2821 atttgttttt gtgttcttta atgatatgat tggctaaaag ctctcttaaa atttgtttaa
     2881 attcattgct tacttcgtga gagctaatgc cataactaag actgtttaaa aattctttca
     2941 cttttaatac tttatgattt tttgtaaaat tcttacataa agtttataaa aaaaatatga
     3001 aatttatact ttaattgcta taataatacc tttaattttt gaatttttaa ggagtgaata
     3061 tggctattac agtatattat gataaagatt gtgatttaaa tttaatcaaa tcaaaaaaag
     3121 tagcaattat aggttttggc tctcaaggac acgctcatgc gatgaattta agggataatg
     3181 gcgtaaatgt aactatcgga cttcgcgaag gtagtgtaag tgctgttaaa gcaaaaaatg
     3241 ctggttttga agtggtgagt gtgagtgagg cttctaagat agcggatgtg attatgattt
     3301 tagctcctga tgaaattcaa gcagatattt ttaatgtcga aataaaacca aatttaagtg
     3361 aaggtaaggc tatagctttt gcacacggtt ttaatatcca ttatggtcaa attgttgttc
     3421 caaaaggtgt agatgttatc atgatagcac ctaaagcacc aggacataca gtaagaaatg
     3481 aatttacttt aggtggtgga actccttgct tgatagctat tcatcaagat gaaagtaaaa
     3541 atgctaaaaa tttagcttta agttatgcaa gcgcgattgg gggtggacgc acaggcatta
     3601 tagaaacaac ctttaaagct gaaacagaaa cagatctttt tggtgaacaa gccgtgcttt
     3661 gtggtggact tagtgctttg attcaagcag gttttgaaac tttggttgaa gcaggttatg
     3721 aacctgaaat ggcttatttt gagtgtttgc atgaaatgaa actcattgtg gatttgattt
     3781 atcaaggtgg tattgcagat atgcgttatt ctatttcaaa tactgcagaa tacggcgatt
     3841 acatcacagg gccaaagatt atcactgaag agactaaaaa agcgatgaaa ggtgttttaa
     3901 aagatataca aaatggtgtt tttgcaaaag attttatctt agaacgccgt gcaggttttg
     3961 ctagaatgca tgcagaacgc aaaaatatga atgattcttt gatagaaaaa acaggacgca
     4021 atttgcgtgc tatgatgcct tggatcagtg ctaaaaaatt agtagataaa gataagaact
     4081 aaacattgtc aaagaaaaaa ttagttcaaa ttcagcgtta tttaatcata gctatacttt
     4141 ttttactttg catagcttta gctttgggaa ttttagtaaa atatcaaaat tcccaagatg
     4201 tttcttctgt taagccggat tattttattg ataagcaaga agatttaatt tcattaaata
     4261 aagatcatta tgaaattggt atttttcaag agaatgagtt tgataataat aaatctgtaa
     4321 gtattttaga gcaaaaaatt caagaaattg atgatttaaa cacaagttta aatgagcaaa
     4381 atttaagcag tgtggagcag aatttaagtt tagagcaaaa tcagagttta gaacaaaatt
     4441 ttattctaaa agatacaaat ttaacccaag atcaaaattt aacttttaat gaagatattc
     4501 atttaaataa aatttctaaa aaaccaaaac ttgctattat tatcgatgat atggcaaatg
     4561 caagtcaggt tagaggttta aaagctttaa atttaaagtt aaatccttct ttttttccgc
     4621 cagataaaaa ccatagcgaa acgccaaaac ttgctttaaa atttgatttt tatatggtgc
     4681 atttaccttt agcagcgatt aattacaata aacctgagct tgatacttta aatccaaatg
     4741 atagcaaaga aagaattttt aaaaaaatca agcaaattaa aaaagatttt aaggatttaa
     4801 gatacatcaa taatcacacg ggaagtttat ttacaagcaa tgaagaagct atgagaaagc
     4861 tttatgaggt tttaaaaaat caaaatatat tttttgtaga ttctaaaact ataggaaatt
     4921 ctaaagcaaa taaaatagcc aaagagttaa atgttcctta tatacaaaga gatgtgtttt
     4981 tggataatga agatgatgtt aattatgtta aaaaacaact tgaaagtgcg gtaaaactta
     5041 cacaaaaaaa aggttttgtt atagccatag gacatcctag aaaaaatact tttaaagctt
     5101 tagagcaaag taaagatttg ttaaaaagcg ttgatcttgt gtatttgagt gaaatttatg
     5161 gcaagtgaaa ttttgcctga tgaattttta gagctttttc aagatttaaa aaagcctcct
     5221 aaaaaattac actataaagg aaatttatct ttattaaaac aagataaaat cgctattata
     5281 ggttcaaggc gtatgagtgt ttatacgaaa aattgtgttt tttccttagc gagtatgctt
     5341 aaaaatgctc atctttgcgt ggtaagtggc ggtgctttgg gtgtggatat caccgcaagt
     5401 atggcagcta tgccaaatac tataggtatt tttgccaatg gtttagatca aatttatcca
     5461 agaactaatg aaaaaatcat taaacaaatt tatgaaaatg ctttagcttt aagtgaatac
     5521 gaagatgatt atttgccaaa aaattatgat tttttactaa gaaatcgttt ggttattgct
     5581 ttaagtaagg ccgttgtggt tgcacaagca gatataaaaa gtggttctat gcagagtgca
     5641 aaacttgctt tagaactcaa taaaccttta tatgttttac cacaaagact agaagaaagc
     5701 acaggaacta attttctttt aaaggaaaat aaagcaaagt taatttgtga ttttaaagaa
     5761 tttgtaagtg agtttgcaag tatagatata aatcaagatg agtttttaga gttttgtaaa
     5821 aaaggtgtga gtgttgatga ggctttaaaa atttatggac aaaaagttta tgaatatgaa
     5881 cttgagggaa aaatttccat agaagggctt tttataaggg ttttagcatg agagctttgg
     5941 ctttagatgt aggtttaaaa cgcataggtg tagcgctttg catagataaa aagatcgctt
     6001 tgcctttaga tgcagtttta agaaaaaatc gcaatcaagc cgctaatgaa atcaaaaatt
     6061 tacttaaaat acatgagatt tctttactca ttgtaggcat tcctaagggt ggatcaagtg
     6121 aagaagaaat gacaagacgc attaagcatt ttgtttcttt gcttgaattt gataaagaaa
     6181 tttgctttgt agatgaaagc ggaacaagca aagaagcttt aggatacggc gtagccaata
     6241 cacgcaaaaa agatggtaaa ttagactcct tatccgcttt tatcatgata aaggattatt
     6301 ttgctctcta gaatagaaaa actttatacc aaagatgaaa tgcaaaatat tttatcttct
     6361 tttactcaag aaaaaaatgt ttgtgtattt gcaaatactt taaaaattag cattgaagaa
     6421 ttagaaaaag aatttttaaa acaaaaatta aaatttaaaa agatcaatgc ttattgttat
     6481 ttgtttgatg ccaaagataa ggctatctta agttctatga aagcttttaa tgaggcgcac
     6541 ttttatatac aaaattattc ttcttatttg tgtgctttaa atttagaagt caaagcaggg
     6601 caaagggttc ttgatatgtg tgcagctccg ggtggtaaaa gtatcaatct tgcaaatttt
     6661 atgcaaaata caggttattt agcttgcaat gagatgagta gggatagatt ttttattttg
     6721 caaaaaaatc ttaaaaatta cggcgtgaat gctaaagttt ttatgaaaga tggtaaaaat
     6781 ataggcaatt tatgtccttt aaaatttgat aaaatcttac ttgatgcacc ttgttcgact
     6841 tttgctaaaa taggttttga tttggaaaaa agttataaag aaatcaaaaa tattgcaaaa
     6901 actcaaaaaa aacttctaca ttctgcttta aaggcattaa aaataggtgg agagcttgta
     6961 tatagtactt gcacctttac caaagaagaa aatgaagaag tgatagagaa tgctttaaaa
     7021 agtgagttta aattagagct tttagatatt gatttggaaa atgttgaggc taaagcaggg
     7081 caaagtgaag aatttgctga aatttcaaaa tgcagac
//
LOCUS       DARGEM010000079         6785 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.079, whole genome shotgun sequence.
ACCESSION   DARGEM010000079 DARGEM010000000
VERSION     DARGEM010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6785
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.079"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(18..821)
                     /locus_tag="SFZ78_001261"
     CDS             complement(18..821)
                     /locus_tag="SFZ78_001261"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG8212128.1"
                     /translation="MESLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            complement(895..2892)
                     /locus_tag="SFZ78_001262"
     CDS             complement(895..2892)
                     /locus_tag="SFZ78_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG8212129.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            complement(3076..4422)
                     /locus_tag="SFZ78_001263"
     CDS             complement(3076..4422)
                     /locus_tag="SFZ78_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEG8212130.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANIYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLSIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGIKLNIEKSEHHNEKWFWLNLLVTIGVIGLLISGIIPSYICFM
                     IGLVIILPLNYPNLKIAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGTYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIRDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            4666..4989
                     /locus_tag="SFZ78_001264"
     CDS             4666..4989
                     /locus_tag="SFZ78_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG8212131.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRK"
     gene            4991..5564
                     /locus_tag="SFZ78_001265"
                     /pseudo
     CDS             4991..5564
                     /locus_tag="SFZ78_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5663..6010
                     /locus_tag="SFZ78_001266"
     CDS             5663..6010
                     /locus_tag="SFZ78_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212132.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            6145..>6785
                     /locus_tag="SFZ78_001267"
     CDS             6145..>6785
                     /locus_tag="SFZ78_001267"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212133.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKIDLKFNNYFLLNKIIKGNFTNPFDFLDKVLK
                     NNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIINGGYIEALMNKNLEIKNIKIHF
                     DMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSKSQQQINFDYLVLDNNK"
BASE COUNT         2687 a         1167 c          800 g         2131 t
ORIGIN      
        1 ataaatttaa tatttattta tagcttaaat tcacttccag catttaaaat cccactataa
       61 tacaaataaa agaaaacaaa tcctaaaata atacgataaa ttccaaaagg gataaagtcg
      121 aatttagaaa taaattttaa gaaaaatttt ataactaaaa ctgcaacaat aaaagcagtg
      181 ataaaaccta tgcctaaagg aattaaagaa tttgcattgc taagaagctc aggctcttta
      241 taaatgctat aagctgtagc gataatcatc gttggaatgg caagcaaaaa actaaactca
      301 gccgcaactt ttctattaaa tcctagcaaa agtccaccaa taatacttgc tccacttctt
      361 gaagtaccag gaatcatggc taaagattga aaaataccta tgcaaaaagc ttgtttaaaa
      421 cttatttctt ctaaagaatt gatacgatat tgtttatttt tatgtgcaag ttctataaga
      481 ataaacacaa caccgccaaa aatgagcatt ccaaccacaa cccaaccatt aaataaagca
      541 tttaagtatt ttgccacaaa aagccctata actccggtag gaaaaaatcc aactgcaagt
      601 tttaaccaaa tatcaagccc ttgaaacaat ttacgccaaa atacaaaaat gaccgccaaa
      661 atagaaccaa gctggatgat aatcaaaaag cttttccaaa actcatctat atcgatacct
      721 aaaatagtcg tacctaaaat catatgtcct gttgaagaaa taggtaaaaa ctcagtcaga
      781 ccttctataa ttccaagtat taaagcatat aaactttcca ttttaatcct tgaatgataa
      841 ttgcaaaaga aaaattatat cagaatggat taaatggggt tttaacccca aaaattaagc
      901 atctttttta acaatacgct taatgaaata taatacaact cccacaaaaa agataagtgc
      961 gaaaagctcg ctatcatgaa aatttgctaa atttaaagct aaaggatttt cactaccacc
     1021 catacttact gaaaatacag taattcctgc gataattacc ccaaaaatac tttcacccac
     1081 tataagtcct gaagcaaaaa gcgtgcctct ttgctcacaa cttgcaagtt tttcttcttt
     1141 atgagaattt tttgcatatt ttttagtcaa gtgttgcatt acaatatatt ttaaaattcc
     1201 acctataact aaaggtatat ttacagcagg gggaaggtaa atacctattc caacggctaa
     1261 aggcggcaaa gacattttct gtgttccttt taaaatttta tctataataa tcattaaaat
     1321 tcctacaaat acaccaaaag ccatataacc ccactctata ttgtgatgaa aaattccttg
     1381 ggcgatagtg ctcattaaat ttgcttgcgg tgctgctaaa gctgatgaag catccatacc
     1441 ttctcttggc attgctccga caaaaccata ggcttgataa agcaaattta aaacaggaac
     1501 tatagccaaa gcaccaaaaa cacagcctac aagtaaagca acttgttgtt tccaaggagt
     1561 agctccgact aaatgtcctg tctttaaatc ttgtaaatta tcattcgaaa tagcagctgt
     1621 agctaaaata acactagtag taaaaatagc taatgctact gcaaatttag aaagcatagg
     1681 atcttgaaaa agttccacac ctaaaaccaa aaaaacaata gaagaaataa taacaccaat
     1741 aagtccgatt ccagaaatag gactagaaga agatcctaca agtcctgcca tatatccgca
     1801 agctgctgca acaaaaaaac ctattaaaac agaaactaaa gttccaacaa atgaaaatag
     1861 catttgataa taaatactta agttagcatc ttcaacaaaa ctataaaaag taataaataa
     1921 acccacaacc attaaaacaa aaagtataaa aatacttttt aaagaaaggt ctatatttgt
     1981 tctttcattt ttttcttgat tagtaatttt aacattttta acaatttctt taataccttc
     2041 aataacgggt tttaaaagtt ctattaaagt ccaaagcgct gctatagcaa tagctcctgt
     2101 tcctataagc cttactttag aactccatac actagaagct aaatctacgg cattttttgc
     2161 actatcgaat tcaaaatttg aaagataggg agtaaaaata ccccaagcta aaaacatacc
     2221 tacaaaaaga gctatagcac ctgctaaacc aactaaataa cctgccccta aaagtgccaa
     2281 agaatatccc atagaaaaac caaaagccat tttattccaa ataaaagcaa aattactctc
     2341 acttgcagcg agtttaaaac cattgcttaa caaactaaaa atagcagcta taaaagagcc
     2401 taatgctatt tctttaatgc cttgttttcc ttttttacta ctctgatctt tattggctac
     2461 ttttaaaatt tcagctgcag ctctaccttc aggataagca agcttgcttt caaccaccat
     2521 agtccttctt aatggtatag taaaaagcac tccaagtccg ccaccacaaa gacatatcat
     2581 aaaagtttgc caaagtggaa attcactcca atacccacac ataaaaagcc ctgggataac
     2641 aaaaataact gatgataaag ttcctgctgc tgaagcttga gtttgaacca tattattttc
     2701 taaaatattt gaagtcttaa aaagactcaa aaccgccatg gagatgacca cagctggaat
     2761 tgatgatgaa aaagtaagtc ccacttttaa ccctaaatat acatttgaag ctgtaaaaat
     2821 aatagttaaa atacttccca aaaccaaacc ccttaaggta agttctggta aattttgttt
     2881 tttgtacatc atttctccgt tttaaaattt tactttcaac ttaaaaaata ttcttataag
     2941 tttaaattta taatttttct ctaaagcaaa ataaaataat acaaaaaaac gcttatattt
     3001 ttataaattt ttgactcaaa aatatcataa aacaatgagc taatcattga aaaatcaaaa
     3061 gttcttttat tttaattata ttatcccagc tacctcagca aaaatcaagc aaataatact
     3121 tataccccat atataaaaaa agcttctttt gatatgatct ctaatattaa cctctgctaa
     3181 accacaacct agcaaagttg caggcacaac aggagaaata aatgtcgcac aatttcttgc
     3241 tatcaccatg ataatagcta tagtcaaagg ttcagcacca aaagccttag ttacactcaa
     3301 aactataggc atcactccat aaaaataaga atccgtacaa aaaataattg ccattggaac
     3361 agccaatatc cctaccatta aaggaatata agtacctaaa taatctggaa cgaaatttaa
     3421 aatcaaaaca cccattttct ccataatacc acttttatca aatacgccta ttaatatccc
     3481 agcaccaatt aaagtaatat acataagcat tgcaccagca cttgcacgat ctaaaacttt
     3541 tttagctatt tttaaattag gataattaag cggtaaaatt attacaagcc ctatcataaa
     3601 gcaaatataa ctaggaataa taccactaat taaaagccca ataaccccaa tagttacaag
     3661 taaatttaac caaaaccatt tttcattatg gtgctcgctt ttttctatat ttaattttat
     3721 tcccgacaag ttacctgcgc ctgcgcctct ttttatttct atcttagcaa tccaaattgc
     3781 caaaagaagg gataatacta aacctacaat ctgaataggt ataatatggt gccaaagcaa
     3841 atttgcatcc attcctatat tagtagccgc tcttaaagta ggaccacccc aaggaataac
     3901 attcataacc cccatagctg aagtaataat caataacatt gaagtctttc ttatacttaa
     3961 acgctcataa ataggtaata atgcaggtat tacaataaga aaagtagaag cacccgaacc
     4021 atctaaatgt acagcagcag caataaaaac agtaagaatg caaacttgat atatattagc
     4081 tttcattttt gataaaaatg catttaaaat tttagtaaaa aaaccacttg catttaaaac
     4141 actaaaaaag agtatagaaa aaacaaacaa agctgccgta tccgttacgc ttttgactcc
     4201 atctttaata aaaacaacca atgttttaat atcaaaaaca cctcctttaa cccctaaagc
     4261 tacacccacg ccaaaaccaa gccgttcaag aataagtaaa atacaagcta cactaatact
     4321 tacacttata aaagctagtg ctggagtagt ataatctttt agcaaaagcc aaactatcaa
     4381 tcctaacgag aaaaaaccca ataaagctaa aaaaatttcc atatcctatc cttttgtatc
     4441 atttttattc gataataaaa taggatattt taactccaac ttatatgtgt ttaaatttat
     4501 agctttttaa aaaaaatata ttttctaatg taaccattat aaacaagaat aaaaaaataa
     4561 ttttgaatta ttttgctata attatgaata ttttaattta tactatcaaa agaaaaaaat
     4621 gaaatttttt aaactttctt tcttggcttt agttgccttt ttttagtggc ttgcggttct
     4681 tcaaatcctg aagatttagc taaaaatttt acaaaagatc tttacagtgg taatactaaa
     4741 tctgttatga gttacattga tcttagcgaa gctaaaagcg atgaagaaaa aacatttgtt
     4801 agtgataaaa tcactcaagt tgttgctgaa aatgcagcca aagcaaaaag aatgggtggt
     4861 gttaaaaata ttcaaattga agaaaaaaca atcaataaag attctgctaa aatcagagtt
     4921 ttagtgttat ttaacaatga taataatcaa agcagcaatg tttttcttgc taaaaaagat
     4981 agaaaatagc ttgttttact taaataaaat tttatatttt ttcttaattt tatttttatt
     5041 gattggaatt ttgggtttct ttataaattc caatccttca aatcaaatca tcaaaaaacc
     5101 ctatctacct tttcttgaaa taggtgatct tgtctttcgt gcaggaatag gaagtgaaag
     5161 ttttttaata gaaaatttaa gtcaaagccc ttattctcat atcgctatgg tagttaaaac
     5221 ttctccaact atactcatac atgctacaac agatgatgac aaaaatgcta aagaccaagt
     5281 tatcttaagc tctatggatg attttttaaa actgagtcat aaaattgcta ttaaaagatt
     5341 aaaatttgat gaaaaaacca aacaaaaaat agttgctaaa gctttggaac atttaggcag
     5401 aaaatttatc ataagtacag ataaagatgc tttttactgc actacttttt ttagaacaat
     5461 ctattaactc cattacccca tttcatcttc aatatactct aatcaaagct ccttttaatg
     5521 aaggtttata tctttttcca caagcttttt ttgaaaataa ttaaagcgta ttaattttat
     5581 gaaagtcaaa aatttttaat ttcacattca cttcacttaa aaattttata atgtcatcac
     5641 tttacattaa ggagaaataa ttatgaaaaa aagtatttta ttcacatcag cacttttagc
     5701 tagctcaatg ctttttgcag atagtctaaa acttgaaggt actattgcgc aaatttatga
     5761 taacaataaa accttgctta ttgactctat ttatggcgga caaatggcta taaaagttct
     5821 accaaatacc gaaatagaaa tggatgattg tggtattttt ggaacagata aagatggaac
     5881 ttttaaagat ttacaggttg gaaatttttt agaaagtaaa atttcttatg gaatacctgc
     5941 tacaccaaat actcaggcta ttccagtagc tagaaaaatt gaaattcaat gttataaaaa
     6001 agcttattaa tataaatccc ttaacaaggg atttataaaa atcattcttc ggcaaactac
     6061 ttcattactc ttaaataaaa atttaaactc ttttttaaca agcaatttat aaaataacac
     6121 ttatattttc atctaaggca aataatgaaa aaatggattt ttattgtttt ttgttttata
     6181 ttaggtttta ttattcatat attttatata ggatacacta acgaactttt atttaataaa
     6241 tttattaaaa acagcaatcc tgattataca attacagata tttacttcaa aaaaggtttt
     6301 ttaacttcta agggaagttt tactttaaat cactctcata cacagctttc aaccaaaatc
     6361 gaccttaaat ttaataatta ttttttgtta aataaaatta taaaaggaaa ttttacaaat
     6421 ccttttgatt ttttagataa agtgttaaaa aacaataaat taggaacttt tactctcaaa
     6481 ttacacgata acaactctaa aatatttcta aatattaaag atataaattt aagcaatgaa
     6541 ggtggagata ccatcataaa cggcggatat attgaagctt taatgaataa aaatttagaa
     6601 attaaaaaca ttaaaataca ttttgatatg attaattttt ctcaatttta tactaaattt
     6661 gtgttgcaaa atttaaatta cgaacaattt tttaacaatc ctgtacaatt ttatgaatta
     6721 aatttattta gcaaaagcca acaacaaatc aactttgatt atcttgtgtt agataacaat
     6781 aaaat
//
LOCUS       DARGEM010000080         6618 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.080, whole genome shotgun sequence.
ACCESSION   DARGEM010000080 DARGEM010000000
VERSION     DARGEM010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6618
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.080"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            2..286
                     /locus_tag="SFZ78_001268"
     CDS             2..286
                     /locus_tag="SFZ78_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8212134.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            399..812
                     /gene="ndk"
                     /locus_tag="SFZ78_001269"
     CDS             399..812
                     /gene="ndk"
                     /locus_tag="SFZ78_001269"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG8212135.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            813..1166
                     /locus_tag="SFZ78_001270"
     CDS             813..1166
                     /locus_tag="SFZ78_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212136.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1190..1336
                     /gene="rpmF"
                     /locus_tag="SFZ78_001271"
     CDS             1190..1336
                     /gene="rpmF"
                     /locus_tag="SFZ78_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG8212137.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1342..2328
                     /gene="plsX"
                     /locus_tag="SFZ78_001272"
     CDS             1342..2328
                     /gene="plsX"
                     /locus_tag="SFZ78_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG8212138.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2321..3295
                     /locus_tag="SFZ78_001273"
     CDS             2321..3295
                     /locus_tag="SFZ78_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG8212139.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3292..3642)
                     /locus_tag="SFZ78_001274"
     CDS             complement(3292..3642)
                     /locus_tag="SFZ78_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8212140.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3639..4715)
                     /gene="serC"
                     /locus_tag="SFZ78_001275"
     CDS             complement(3639..4715)
                     /gene="serC"
                     /locus_tag="SFZ78_001275"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG8212141.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4725..5888)
                     /locus_tag="SFZ78_001276"
     CDS             complement(4725..5888)
                     /locus_tag="SFZ78_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG8212142.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5885..6592)
                     /gene="ubiE"
                     /locus_tag="SFZ78_001277"
     CDS             complement(5885..6592)
                     /gene="ubiE"
                     /locus_tag="SFZ78_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG8212143.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2292 a         1075 c          996 g         2255 t
ORIGIN      
        1 aatggctgta aaaattacag atatatgtat tgcttgtggt tcttgtattg atgagtgtcc
       61 agtgagtgct atcgttgatg atgctaacaa tccagaaggt gaagatagat attatgttta
      121 tgcaaacaaa tgcgttgaat gcgtaggaca taatgatcaa ccagcttgtg ccagtgcttg
      181 cccaacagat ggatgtatag tttggagtgc tgtagaatca ggacaaccaa gtcgtgataa
      241 tattggcgct gatatgagaa gtggggacac tccagttttt gcataatttt aaaaaattaa
      301 aaagctagag attcctagct ttttctttta atttaacttt ctttaaacaa attcaagtat
      361 aattttaagc tttattaaaa taaggagtta ttacaaagat ggaaaaaact ttatctataa
      421 ttaaacctga tgctgttaaa aaaggtgtta taggaaaaat tttagatcgt tttgaaagca
      481 atggattaag aatcgctgca atgaaaaaag ttcaacttag taaagaacaa gctgaaaatt
      541 tttatgctgt tcataaagaa agaccttttt ttaaagactt ggttgaattt atgattagcg
      601 gtcctgttgt tgtttctgta ctagaaggag aaggtgctgt attaaaaaat agagatttaa
      661 tgggagcgac aaatcctaaa gaagctaaag caggaacaat tagagccgat tttgctgaga
      721 gtattgatgc taatgctgtt catggaagtg acagcttgga aaatgcaaaa atagaaattg
      781 attttttctt taaaccaaat gaaatttgct aaatgaaaat ccctttttct aagattaata
      841 caaaggaata tccttttaaa cttaatcttg aaaatatgat ttttgaggga aatttagtaa
      901 aaataaatcc taagcttgtt aaaataaatg ctattatgca aggttttatc tatagacctt
      961 gtgatagttg tggaactgag ttagaacttg aaattaaaga aaatttagaa ctttttgcaa
     1021 gtgatggtat ttttaaagat gaagcaaacg aattgagcaa tactatagaa ttttttgatg
     1081 gacatattga tttaatagaa gttgctatta gcgagcttga agcttatttg agtgattatt
     1141 tttattgcat aaattgcaat aattaattaa attttataaa ggagaaaaaa tggcagtacc
     1201 aaagagaaga gtgagcaaaa ctcgtgcagc taaacgcaga actcactata aagttagtct
     1261 tcctatgcct ataaaagaca aagatggaag ctacaaaatg cctcaccgtg cgaatccaac
     1321 aactaaggaa tattaaaatc aatgattaac attgccattg atgcaatggg tggtgatttt
     1381 ggagaaaaac ccattataga aggcgtttta aaggcactag aagcaaaacc ttttaacgct
     1441 atcttagtgg gaaattctaa aattctaaaa cctttaatac caaaaaaatt agaacaatat
     1501 atacaatacg aagaagctag tgaaattttt tcgatgaatg gaaatgccac agatgcttta
     1561 aaaaataaag aaacaaccat atacaaagct attaatttat taaaagaaaa aaaagtagat
     1621 gctgtagttt cagcgggtca tagtggagca agtatgtctt tggctacctt aaggcttgga
     1681 agacttaaag gtatttcaag acctgctatt gccactttaa tgccaaatat cgttaacaga
     1741 actttacttt tggatgttgg agctaataca gattgtaaag ctgaaaattt atttcaattt
     1801 gccataatgg gtgaagttta tgctagagaa attatgcaaa ttcaaaaacc acgccttgct
     1861 ttactttcta atggtgaaga agaatgcaaa ggcaatgaac ttaccaaaga aagtcatcag
     1921 cttatgaaaa aaattccaaa ttttataggt aatgctgaag gtagagatat tttcaatggt
     1981 gaaatagatg ttttagtctg cgatggtttt gatggaaacg ttatcttaaa ggcttgtgaa
     2041 ggtgtagcaa cagctatttt tcagcttcta aaaaacgaag taaagcaatc ttttatttct
     2101 aaaataggtg ctttacttat gaagtcatct tttaaaaaat taaaaaaaca cacagattgg
     2161 caagaatatg gcggagcacc ccttcttgga gttaatggct gcgtgatcat aagtcatgga
     2221 aaaagtgatt ctagagctat taaaaatgca atttttcaag ctataaattt tagccaatct
     2281 catatcaatg aacttataga aaatgaactt gggaaataca atgcttaaag ccggtcttaa
     2341 aagtatagct tcttatattc cagaaaaaat tttaagcaat gctgatcttg aaaaaatagt
     2401 agataccacc gatgaatgga tcactagacg cacaggtatt aaagaaagac gcattgctag
     2461 tgaaaatgaa aattctagcg atttgggcac aaaagctgca ttaaaagcca tagaaagagc
     2521 aaatttaaaa cctgaagata ttgatgcgat tcttgtagcc actttaagtc ctgattattt
     2581 tactatgcct tcaacggctt gtaaaattgc ttcaaattta ggacttgtaa atattagtgc
     2641 ttttgatatt tcagcagctt gttctggttt tatctatttg cttgaacaag ctaaagcctt
     2701 agtagaaagt ggtttgaaaa aaaatgtttt aatcgtagga gctgaaaaaa caagttcaat
     2761 tatggattac aatgacagaa gcatttgcat actctttgga gacggtgcgg gtgctggagt
     2821 tgtaagtttg gacaatgaaa atcatatcct tgatgtacat actgcaagca atggtaatta
     2881 tggagatctt ttaatgactc aaagatcgca aaaatcaagt ctatgtcaaa cactttctat
     2941 gcaaatgaaa ggcaatgaag tttttaaaat agcagtaaac acgcttagca atgatgttgt
     3001 agaaatttta gctaaaaata acattttagc acaagaaatt gatcttttta ttcctcatca
     3061 agctaatcta cgcatcatta aagccgtcca agaaaaactc aatctaagcg atgaaaaatg
     3121 tgtgattacc gtacaaaaat atggcaatac ttcagctgct tctataccta tggcaatgaa
     3181 tgatgcctat gaagaaggac gacttaaaaa aggaaatctg atcttactag atgcttttgg
     3241 cggtggtttt acttggggat ctgcgctttt aaaatttgga ggagagaatt tttaattctc
     3301 tcttagcttt ccaaaagctt gaatttctac caaataaccc tctgctaaag cacttcctac
     3361 acaagctcta acaggtttag gataattttt aatccaagca tcataagttt cattcattgc
     3421 atcaaaatct tgcatattag ctaaccagat ttgaatttga atcaaatctc ctttgcttgc
     3481 gcctattttt tcaaacaaag catcaagttc tgcaagtgct tctttggttt gttttttaat
     3541 atctccgcta ggttcaaaag ccacttgtcc tgcagtctta aaatatttat caaaaacaat
     3601 aatttgcgac attctatcgc actcatcaaa acgctttatc atgcatattt tccttgaaat
     3661 tctttcataa attcacacaa ggtttttacc tgatccaaat taagcgcatt ataaatactt
     3721 gcacgaattc ctcctaaaat tctatgtcct ttaagtccta tcattccagc ttcttcggct
     3781 tcctttacaa aaagaggctc taaatcttta tttttagcaa tattaaaact cacattcatt
     3841 aaagatctgt cctttttatc tgcatgtcct ttataaaatc cattacttaa atcaatacac
     3901 tcataaagca tagcagcttt ttgagaattt ttctcatgta ctttatcaag tccgccttga
     3961 tttaaaagcc aatccatttc aagattaaac atataaatgg caaaggttgg aggcgtatta
     4021 aacaaggact gattctcagc atgagtcaaa taatttaaca tactaggaat ttgtttattt
     4081 ttagatcttt ctaacatatc tttacggata aaaatacaac ttaaacccga aattccagca
     4141 tttttttgca ctccgccata aaaaagagca atatttgaaa aatctacttt tctagaaaaa
     4201 aaatcactcg atgcatccac aatcaaagga gttttagttt taggataatt ttgatattga
     4261 gtgccgtaaa tagtattgtt agaacaaata taagcataat cagcattatc tctaaattcc
     4321 actctaggaa tatgattaaa attactttcc tcgctacttg ctacggtttt aacattgaca
     4381 cctaaaattt gtgcttcttt aattgctttt tttgtccaaa ctcctgtatt tgcatattca
     4441 caaatcccat ttaaagccaa attcatagga atcatagcaa attgtaaact tgctccacct
     4501 tgtaaaaata atacttcata atcatcattt aacccgtaaa gttttttagc tttctcttgt
     4561 gctccaaaat gcacttcttc aaatactttt gtgcggtgag aaatttccat tatagaataa
     4621 cccctaccct gataatcaca gagttctttt tgagcttgct ctaaaatttc taaaggtaaa
     4681 gtcgatggcc ctgcactgaa attgattttt ctcataatct atccttataa aatttttgct
     4741 tctttttgag aagtttgaga acttaaaata acgatatcat cactcttaag atcttctaaa
     4801 tttgctattt taccattttt tctgatacaa ataaactttt tgcttttatt aaaaaaattc
     4861 tcatgttgca aataagcatt ttgcaattta tctaatttta attcattata acgcatttga
     4921 tttgccaata gatgatttaa ttgcttttct atattatggc tttgttttat tttttcatct
     4981 attatttttg gcaaagaatt aaatttgaaa aatttgctta aatttaaaag caaattttca
     5041 taattttgta ttttataatt ccaaagttgc attaattttt cttccattaa atccaaactt
     5101 tgctctatat ccaacttaga ataaaacaaa gtatctatag cagctgaagg cgttggagct
     5161 ctaaaatctg caacaaaatc actaataaca taatcaatct catgtcctat ggctgaaata
     5221 ataggagttt ttgctttaaa aatctctctt gctaaatttt catcattaaa acaaaaaaga
     5281 tcttctctgc ttcctccacc acgtgctata ataagaacat ctaaatccat atcatcggct
     5341 ttttttaaag cttgtataag agaaaaagga gcattatttc cttgagttaa agcatcaaaa
     5401 atataaattt ttgccaaaaa atattctttt tggtgaataa gttttaacat atcttgcaaa
     5461 gcagcagaag tttttgaagt gataatgcct acttttttag gaaattttgg caaagatttt
     5521 ttaaagcgtg gatcaaaaag tccttctttt tgcaaacgct cttttaaagc caaaaactgt
     5581 gcttccaaat ccccaaaacc tgcttttttc atactagtag cgataaattg ataacgacca
     5641 ctttcaggat ataaacttac acttccacaa agctctaaaa aattccccac agctggttta
     5701 aatccgactt ttaaattagc tcctttaaac atagcacaag caatgcttga tctttcatct
     5761 tttaaatcaa aataccaatg tcctgaacca tgcaaagtaa tttttgaaat ttctccactt
     5821 aaaactatat catcaaaatg tgtttctaat aaagcctttg ctttaagatt taattctgtt
     5881 ggtgtcatag tttttttgct ataaacattg aactcacgcc aaagctaaaa cttttataat
     5941 caagtatttc aaaaccagca tttttaagtt ctaagatgaa ctcttcctta cttaaaaatc
     6001 cttcaataga gtttggcaaa tactcataag cacttttatt tttactgatt atcccaccta
     6061 tacttggtaa aatattttta agataaaaat ctctacaagc tgctataaat ccaccctttt
     6121 ctctttttgt aaattccaaa actaccaaaa taccatcttt ttgaagtact ctagcaaatt
     6181 cacttaaggc tttttgtctt tctacaacat tgcgaatgcc ataactaatg cttaaaatat
     6241 ctaaactttg actttctaaa ggtaaatttt gcgcccctgc ttctataaat tcgacatttg
     6301 gaaatttttc ttttgcaaca tttagcatgc cactacttgg atcaatacct ttaatattta
     6361 gaatattttt ttccattttt aaagcactct cttgccaaat ctctatcata tcccctgtgc
     6421 cacaggcaat atcagcgatt tttaaatctt tttttaaata caaactcatc actctttgac
     6481 aagctttttt gcgccacgct acatcagctc caaagcttaa aattctattc gccttatcat
     6541 aagtaggtgc aatttgatta aacatttcta taattttttc ttgtttttgc atttttatcc
     6601 tttgtaaatt ttcaaatt
//
LOCUS       DARGEM010000081         6596 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.081, whole genome shotgun sequence.
ACCESSION   DARGEM010000081 DARGEM010000000
VERSION     DARGEM010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6596
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.081"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..74)
                     /locus_tag="SFZ78_001278"
     CDS             complement(<1..74)
                     /locus_tag="SFZ78_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M15 family protein"
                     /protein_id="HEG8212144.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNV"
     gene            223..657
                     /locus_tag="SFZ78_001279"
     CDS             223..657
                     /locus_tag="SFZ78_001279"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212145.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            659..1474
                     /locus_tag="SFZ78_001280"
     CDS             659..1474
                     /locus_tag="SFZ78_001280"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212146.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESAKNLANSLVDNALNSGKIANSQK
                     EWAISYACKDLEGFKSFLDTKNDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            1477..2004
                     /locus_tag="SFZ78_001281"
     CDS             1477..2004
                     /locus_tag="SFZ78_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212147.1"
                     /translation="MAKAKKETQNLENEDLETGDLPKALSLEDENLVNEEAVSENETT
                     KEFINEKGEEMPSKVTPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNGSLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGVYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            2007..2984
                     /locus_tag="SFZ78_001282"
     CDS             2007..2984
                     /locus_tag="SFZ78_001282"
                     /inference="COORDINATES: protein motif:HMM:NF015802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HEG8212148.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     ISVKKDGSVTLDSVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            3100..3558
                     /locus_tag="SFZ78_001283"
     CDS             3100..3558
                     /locus_tag="SFZ78_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 family protein"
                     /protein_id="HEG8212149.1"
                     /translation="MNYQDILEEKLITETKTHFFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLE
                     EIREWANDLLLKMANKKIPTEIDEDNFIPQNKVRAFKIKRKRMDLRRLNG"
     gene            3551..4150
                     /locus_tag="SFZ78_001284"
     CDS             3551..4150
                     /locus_tag="SFZ78_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEG8212150.1"
                     /translation="MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNN
                     LKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESAS
                     LYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVA
                     KKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI"
     gene            4150..5820
                     /gene="terL"
                     /locus_tag="SFZ78_001285"
     CDS             4150..5820
                     /gene="terL"
                     /locus_tag="SFZ78_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEG8212151.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYAMLYRNADFNTAHQFYLKNKVLMDKGAKVL
                     WKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            5830..>6596
                     /locus_tag="SFZ78_001286"
     CDS             5830..>6596
                     /locus_tag="SFZ78_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HEG8212152.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNVFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNGNGCEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGAN"
BASE COUNT         2545 a          831 c         1238 g         1982 t
ORIGIN      
        1 acattttgag gcaattcgca tttaccacat ttacatttaa attcgctttc tttaaaataa
       61 gggttatttt tcattttcac tcctttaaaa tgtcgtaagt ttagttaaaa agctgaccca
      121 aaaactagaa aaattttgtg ctaaaactct ttgaaaaaat aatttgcttg attaaaaaaa
      181 gaactcattt taaaattgcc gctaattttt aaaggatgaa aaatgcttaa aagttttgaa
      241 aatgagcttt tagaactatt aaaagatttt aaagtaagaa tgtatttagg cgagtttgaa
      301 gacacccaaa acatagcaag ttgtattaat aatttagatg cttcactttt gcttgatttt
      361 gaaggagaaa gttataaaga tttagaaaat aaagtgggaa cttggaaact ttatatttta
      421 acccatacaa aatcaaaagc tcctaaacac agaattgatg ctaagcataa attatttgat
      481 gcaatagaag ctgttgataa agtgctttta aatgcagaac ctagcaatgg ttttagaata
      541 gagcttaaag atcttaaaaa ggtttacgaa ggaataagcg atcatggcta tttaagcatt
      601 tatgcaagaa ctttgcaaag tagcttttta ccaaaagatg attttttaag gatttaaaat
      661 gctttttatc aataaagaaa atttagtcga agttagcaat gataagccca taaaagtggc
      721 aattaagggt gagtggaaag ggcataataa tggcaggttt aaggttgatg ataaagattt
      781 aaactcaatg attgataatt ttaatcaaaa aaagattgat ttggttattg actatgagca
      841 tcaaagctta aaaaatgaaa aagcacctgc tgcaggttgg attaaagagc tttatttgga
      901 aaatgatgcc ttaatggcta aggctgagtt taacgaagag gctaaaaaat atatagcaaa
      961 taagcaatac cgctatttat cccctgtgtt tgaatttaat tcaaaagaca ataaaagtgg
     1021 agaactagta agagctaagc ttcactcagt cgcactaact aatacaccat ttattgatga
     1081 gctaggcgaa ctcattgcta acaaaaataa tattcatcaa aacaaaggag agaaaatgga
     1141 tgaaaaaatc aaagagctag aatctcagat tatagcttta aaaaatgaaa atagctcact
     1201 cgctttacaa aatgaagctt taaaaaaaca aaacgaagaa agcgctaaaa acttagctaa
     1261 ctctttagtg gataatgctc taaatagtgg caaaattgct aattcccaaa aagaatgggc
     1321 aatatcctat gcttgcaagg atttagaagg ctttaaaagc tttttagata ccaagaatga
     1381 tcaagtgcaa gttccaaaaa acaatgtttt tgcaaataaa aacacagcaa aaactaatga
     1441 gtttgatgtt gtgaaaatga tgttagggga ttaaaaatgg ctaaagctaa aaaagaaacc
     1501 caaaacctag aaaatgaaga cttggaaact ggagacttac ctaaagcttt gtctttagaa
     1561 gatgagaacc tagtcaatga agaagctgtg agtgaaaatg aaaccactaa ggaatttata
     1621 aatgaaaaag gagaagaaat gccatcaaag gtcacaccaa aaagcttaag caatgatcct
     1681 ttaattgcta tgccaaaaag ccttgaaagt tttatcaata aagatttgtt ttcaattaat
     1741 gcgaaaatag atcttgaaac taatggaagc ttagctcttg gaacgctttt aatcagcgaa
     1801 gattttggag aaagctttaa aaaatgtcca aatgaagata ttagtgcaaa agaaaatgtt
     1861 aaattagcaa tgcttaaaga tcacgctctt agttctggag tttatggggt tttattagca
     1921 ggagaaatca atttaaaagg cgttcatgta agtgcggtta aaaaggcttt tatgcaaaat
     1981 ttaattatta atactaagga gtaaaaatgg atttagagca acttttggaa cttttttcaa
     2041 gtacaaaaat aactgaagtt attaatcaaa ccaaagcttc acctcgcttt gtaagtgata
     2101 ctttttttaa ggataaaatc ccaagtttag agagcaccgt aagggttgaa attataaaag
     2161 gtgctggaat tgttttaaat agcatttcag ataatgggga acattcttta gaaaatacta
     2221 aagacgctta tattttaaat atacctttac cacgctttgc attagcaaaa agaatcagtg
     2281 cgagtgagat taattcttta aggtctttag cattgcaaga agctcaggct aaaagcttaa
     2341 gtggagctct tggggttttg gttaaagaaa tgaaagaaag ctttaatact acgcttgaat
     2401 atatggcaaa tggtgcttta tttggcaaga ttttagatgg caaaggaaat gtgctttttg
     2461 attttggaag tgcaagtaag aaagctatta gtgttaaaaa agatgggagt gtgactttag
     2521 acagtgtttg tgatgcgatt gattcagcaa ttattgatga atttggaaca agtgctgatt
     2581 atgaagtgct ttgtggaaat gaactttttg cggctatttc taacttggca ttaagcgaag
     2641 atctttataa aaatcatctt gcaagtaggg atgagaaaga taagtcctta attttatatg
     2701 gcaccaaata tcgccgttat agtgcaaaat ataaaaatac aaatggaaaa agcgttgaat
     2761 ttttaaaagg cactgagggt atggttgtgc caaaggataa ttctaatcgc atttattata
     2821 caagagcaaa tcatactgat gctttaggaa aagcaccaag tttaatgttt gtttctaagc
     2881 ctgagatttt acctcgtggg gctggaattg aaattgtagg cgaaatgaga gccatgccag
     2941 tttgcaccag accaaatgga cttattaagc ttgttttaga gtaaaacgca caattttagc
     3001 tttaaaggca aaaaatgctt ttaaagctaa aaagatatta gaaaaagatt ttaaacgatt
     3061 ttaaccatat tttaaccaca ttaaaaaagg tttttttaaa tgaattatca agacatttta
     3121 gaagaaaagc ttatcacaga aactaaaacg cattttttta tgatagatga aaaggattta
     3181 atcaaagaat taagcgttca tgccatagca gagcttagcg atttaaatgc tgacggggtt
     3241 tgtgataaag aagtgattga tgatgctatt aatgatgcac aaagttatat tgcaagtttt
     3301 ataaagatac ctaaaaaccc aactcctctt ttaaaagata tctgtgtaaa gcttacaatt
     3361 atggaattaa aacgccgaaa tgattttcca aaagaaagct tagaagagat tagagagtgg
     3421 gctaatgatt tacttttaaa aatggcaaat aaaaaaattc caactgaaat tgatgaagat
     3481 aactttattc cacaaaacaa agttagagcg tttaaaatta aaagaaaaag aatggattta
     3541 aggagattaa atggctaaaa atttaacttc caccacaaag cctaagatgg caaaggtcgg
     3601 gtgtggcctt caggtgggtg cagagagtga aactcctgct cgtaaggata aatttacttc
     3661 atccgcgaag tctcaaaaca acttaaaaga tttagcaaaa gaactttata ttgcaggttt
     3721 tgatatattt aaaattgcaa aaattttaaa ccgcaatgaa aaaacgatta gaaactacaa
     3781 agccaaagat ggcgattggg ataagcaaaa agctaatctt ttaacttcaa aaataaaaga
     3841 taaagaaagt gcctcattat atgaaagttt tactgagcaa atgttttgtg cgattgaaaa
     3901 tataaatact gatgaaaaaa tgaatgcaga aaagaaaact gaagccattg caaggatagg
     3961 cgatagcttt tcaaaaatga gaaaggttgc aagattagaa gatccaagta gctatcgttt
     4021 aaatgttgct aaaaaagtgg ttgaaattat cataagtcat ttaaaaaatg ataaagattg
     4081 cgtagcaaaa cttgtatcac ttttagaaag tggagtgata gaaaaagaaa ttttagcaat
     4141 ggatatttaa tgcttttttc caaagaagaa ctcgatgagt ttttaatctc aaacgaacaa
     4201 aagcacgaaa acactccaaa tgaactaaaa ggtgctatgc aaagaaaaga ctttttagaa
     4261 tggatggatg agctaaaaaa tgaattaaaa actcaatttt tgcatgaaag ccatttagat
     4321 cctactttaa aagaagaaag aattaaaaga gcgagtgtgg attttgatta ttttgcaaga
     4381 acttattttc cgcattattt taccattaaa ggagaatgtg gcttacattt gcacttaaat
     4441 gaagttttta caaaaatcgc acttaaaaaa gaaagtaaag gtgaaaaaca cgccatagct
     4501 gcaccaagag ctcatggtaa atccacctac acttcacaac tctttccttt gtggtgctta
     4561 gtttttaatt ataaaagctt tatagtagag atttcagatg cggtcgaact tatggaagga
     4621 atgcttgaag ctattaaagc agagcttgaa gataatccgc atttaaagct tgattttccc
     4681 gaagtagtag gaattggtaa gacttggcgc gtaggagagt ttgtaagtaa taatggcgta
     4741 aagattaaag cctttggcag tggtaaaaga ctgcgtgggg ttagatatgg ggttaaaaga
     4801 cctgatttag ttattttaga tgatttagaa aatgatacaa atgtcagaag taaagatcaa
     4861 agggataaat tagaagattg ggtggatgaa gcggttttaa acttagggag tgcggatgga
     4921 agcttagatg tgctttatat tggaaccatt ttacataatg atagtgtttt atctagaaaa
     4981 ttaaagcttg gtttttggaa tcctaaagtc ttccgttcca tcgaagagtt tccacaaagg
     5041 cttgatttat gggatgaata cgccatgctt tatagaaatg ctgattttaa taccgctcat
     5101 caattttatt taaaaaataa agttttaatg gataaagggg caaaagttct ttggaaagaa
     5161 gccaaaagct tagaagattt aatgaagtta agggctgaaa atctaaaagc ttttaataaa
     5221 gagcaactca ataatccaag aagtgaaaat caaatcttta gccttgatgg cattaatttt
     5281 tatgatgatt tacctgccat taatcagtat tatatgtata ttgacccagc aggagaaaaa
     5341 gcaaaaagtg actttactgc gattaccatt attggcaaag gtgcaaaggg tttttatgta
     5401 gcagaaagca tcgtaaaaat cttaaaagca caaagcatta taaaaaccat ttttaatctt
     5461 caaaagattt ataaatgtcg cttgattgaa attgaaacta atggcggtca atttttcttg
     5521 aaaaaatggt tacaagaaaa aagcttagaa agtggagttt ttttgccttt gcgtggtaaa
     5581 aataatagcg ttagcaagtt tgaacgcatt gagagtttaa gccttgcttt tgaaaatgaa
     5641 gagctttttt tacataaaag ccaaactatg cttataaatc aacttttaga atttccagaa
     5701 gggaaaaatg atgatgcacc tgatagctta gcaggagcat ttttattagc aagaactaaa
     5761 agtagcatta aaagaagaaa gcatcatttt aactctgttt caagaataag gcgtttttaa
     5821 aggaaaaata tgaaaaaaga aatcaaatcc aaaagagaag tgatattaaa aaacaatagt
     5881 cttataaaca ctcttataaa ctcaagctat ttaaatgtgc ttaaaatcag cgagaacgat
     5941 caaaaaatga tttttaaaga tctaagcttt actcaagctc atcaatcacg aaggagtgtg
     6001 attttagcaa aagagcttca aatcgtttgt gaaaacgaaa aaataaaaga aagctttgag
     6061 tatcttttca atcctgattt attaagtcaa atcttagaaa cctatcttta tgggcttaat
     6121 gtatttgaag ttaattacaa gttaaaagat ggtttttact atccaatctt aaaacaaaga
     6181 gattttagaa attttggctt taatgaaaat gatgagttag tttataatgg caatggttgc
     6241 gaagaaattg tggaagataa aaaagcaatt tatggacttt ttggctctaa ttttttattt
     6301 aaaaatggcg atgccttatt aacaaagctt tattttccag taaagcttaa aaatgcaagt
     6361 ttaaagtttt ggatggagtt tttagaaaga tttggttctc cttgggcagt tgcaaaaaca
     6421 gatagcgatc ctgatgcact agcttctgaa attcatcaaa tgttaaatgg cgatagtgcg
     6481 gtcattgata aagaagaaga gcttgattta atccagccaa aggctaaggc aaattataat
     6541 gaaataatag attacttaga taatcaaata agaagcgtgg ttttaggagc taattt
//
LOCUS       DARGEM010000082         6515 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.082, whole genome shotgun sequence.
ACCESSION   DARGEM010000082 DARGEM010000000
VERSION     DARGEM010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6515
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.082"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            21..749
                     /locus_tag="SFZ78_001287"
     CDS             21..749
                     /locus_tag="SFZ78_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG8212153.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            751..2472
                     /locus_tag="SFZ78_001288"
     CDS             751..2472
                     /locus_tag="SFZ78_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG8212154.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     ESNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGRGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            2679..3374
                     /locus_tag="SFZ78_001289"
     CDS             2679..3374
                     /locus_tag="SFZ78_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212155.1"
                     /translation="MVNFDTQYTNINYPNNNTSNKKAVLKNDDDAYYESIIKKFGDLE
                     KFKEENGYNGSPDVKEVENSLYKRYMEDRLSKDEIKILNKFGTDYLTEGVDLSALHKR
                     KVDLLKTLTSMNEFEKIWGAERAQREKQFFNELGKPLTQEDIDRFLTNKNNQKEDKEA
                     FKPIQAESKNKETYKDDNTRNELVKKLLEGKFSTSKELEILFGVKFSDDDAGEFNKIL
                     SLNSAPKSIDIKA"
     gene            complement(3480..4184)
                     /locus_tag="SFZ78_001290"
     CDS             complement(3480..4184)
                     /locus_tag="SFZ78_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212156.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANAAKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            4292..4654
                     /locus_tag="SFZ78_001291"
     CDS             4292..4654
                     /locus_tag="SFZ78_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG8212157.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            4728..5300
                     /locus_tag="SFZ78_001292"
     CDS             4728..5300
                     /locus_tag="SFZ78_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG8212158.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(5305..6261)
                     /locus_tag="SFZ78_001293"
     CDS             complement(5305..6261)
                     /locus_tag="SFZ78_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212159.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(6322..>6515)
                     /locus_tag="SFZ78_001294"
     CDS             complement(6322..>6515)
                     /locus_tag="SFZ78_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8212160.1"
                     /translation="RDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELLENSKKT
                     HEELLHIEQTIQDEIAKFK"
BASE COUNT         2340 a          858 c         1153 g         2164 t
ORIGIN      
        1 attattatta aggagaagta atgcaagaca atattattga tcgcagaagc ttttttaaac
       61 tagggctttt aggtggttct gtagtagcag ctagtactat aggtggcggt gctgttttaa
      121 aggcagcaga acttacgcat tcgcatcaag cttcacaagg aaaatcaaat aaagttagag
      181 gtagaatgtt ttttcaaact caaactgaat ttgatacctt aagtgcagcc tgtgaaagaa
      241 tttatcctaa agatgagcaa ggagaaggag ctataggttt aggcgtacct tattttatcg
      301 ataatcagct agctagtgct tatggttata atgatagaga atatatgcaa ggacctttca
      361 ttgagggtaa agctgaacaa ggctatcaaa ctcctatgca acgcaaagat atttttttag
      421 aaggtgtgca tgctcttgaa gaaaatgctc aaaagcgtta taaaaaatct ttttctctgc
      481 ttaaaggtgg agatcaggat aaaattctaa gcgattttga aaaaggaaaa attcaaacta
      541 cgggttttaa atcttcttat tttttcactc ttttaagaga tatgacagta gctggagttt
      601 tagctgatcc aatttatggc ggaaatgata ataaaaatgg ttggagaatg atgcaatatc
      661 caggtgcaca aatgagctat gtggataaaa ttgcaagtga tgaatttttt aacattgaac
      721 ctatgagttt agcagatatg gagagttaaa atggctgaag tattaaaaaa agtagatgtg
      781 gtaacagttg gggcaggatg gactggaggt atagtggctg cagagcttac taaagcaggt
      841 ttgaatgtac ttagtttaga acgcggacat atgcaaagta ctgaaaattt taattttatc
      901 catgatgagt ggagatacgg gattaattat ggtttgatgc aagattgctc gaaagacact
      961 gtgacttttc gccatgatcc tagtggttta gccttgcctt atcgtaaaat gggttcgttt
     1021 ttattgggta ataatgttgg cggtgcaggg gtgcattgga atggttggac ttttaggttt
     1081 atgccttatg attttgaaat tcaaacccta agcaaacaaa gatatggtaa taaattaggt
     1141 aatgattata ccttgcaaga ttggggtgtg acttataagg atatggagcc ttattatgat
     1201 agatttgaaa aaacctgtgg ggtatcaggt gagtcaaatc ctttagcgga aaaaatggga
     1261 gcttttagat ccagtcctta tccacaagaa cctcttgaaa atactaaaat gcttaaacga
     1321 tttgaaagtg cagcaaaaag ttcaaattta cacacttatc gtttgccagc ttcaaattct
     1381 aaaggtggct atacaaaccc tgatggtcaa gatttagctc cttgtcaata ctgtgcgtat
     1441 tgtgagcgtt ttggttgtga gtatggcgca aaagcaagtc ctttaaacac agtaattcca
     1501 aaggctatga gcacaggtaa atacactata cgcacttata gcaatgtaac gcaaattctt
     1561 aaaaaagacg gaaaagtaac gggggtaaaa tttgtcgata ctagaacgat gaaagagtat
     1621 attcaacctg ctgatatagt tgtgcttaca agttatatgt ttaacaatgc taagctttta
     1681 atggtaagca acataggtga gcaatacgat ccaaaaacag gtagaggaac tttaggtaga
     1741 aattattgtt atcaaatgaa catgggtaca acagctttct ttgatgagca atttaacacc
     1801 ttcatgggtt caggtgcttt gggaactacg agtgatgatt ttaacggaga taattttgat
     1861 cattctaagg aaaaattcct tcatggagct atgatttata gcgttcagct tggaactcgc
     1921 cctatacaat cagccccact tccagcagga gctccaactt ggggtgctga atttaaaaaa
     1981 gcattaaact ataatttcac aagagctatt accgtagcag gacaaggtgc ttctttgcct
     2041 cataagaata attatttaag tcttgatcca acttataaag atgcttttgg tatgccactt
     2101 ttacgcttaa cttataattt caccgatcaa gatagagctt tgcataaatt tatcacagat
     2161 aaaacagctg aggtagcaaa aagaatgcaa ggagtaaaat caatcaaaaa aggtgcttat
     2221 cttaaggatt atagcgttgt gccttatcaa tctactcata acacaggtgg aacaaccatg
     2281 ggtgcagata gagaaactag tgtggttaat acttatttac aacactggga tgcggataat
     2341 ctttttgttg taggagcagg aaatttccaa cacaatagtg gatataatcc aactgatact
     2401 gtaggagctt tggcttatcg ctgtgctgaa ggtattttaa agtatcataa aagtggaaaa
     2461 agcttagctt gataataact tgagagtttt tgaaaactct caagattata aatttttaat
     2521 tttcttccga tatagtataa tatcaaggaa ggcaaaaatg attaatggtg taaattctta
     2581 tttaaactac aattatacaa aaaggcaaat gtagtctgct cttggtggtt ggaatccaag
     2641 attattttaa taaaatatca taaaaaaaag ggttttctat ggtaaatttt gatactcaat
     2701 atacaaatat caattatcca aataataaca caagcaataa aaaagctgtg cttaaaaatg
     2761 atgatgatgc ttattatgaa tccataataa aaaaatttgg agatcttgaa aaatttaaag
     2821 aagaaaatgg ctataatgga tctcctgatg taaaagaagt agaaaactct ttatataaaa
     2881 gatatatgga agatagacta agcaaggatg aaataaaaat acttaataaa tttggcacag
     2941 actatcttac agaaggcgta gatttgtccg cacttcataa acgaaaagtt gatcttttaa
     3001 aaactcttac aagtatgaat gaatttgaga aaatatgggg tgctgaaagg gcacaaagag
     3061 aaaaacaatt ctttaatgaa cttggtaagc cacttactca agaagatata gataggttct
     3121 taactaataa aaacaatcaa aaagaagaca aagaagcttt caaacctata caagcagaaa
     3181 gtaaaaacaa agaaacttac aaagatgata atacaagaaa cgagcttgta aaaaaactat
     3241 tagaaggtaa atttagcact agcaaagaat tagaaattct ttttggtgtg aaatttagtg
     3301 atgatgatgc aggagaattt aataaaattc tttctttaaa ttctgcacca aaaagtatag
     3361 atataaaagc ttgaaaatgc aaaaatttaa attataaaaa agaaaaaatg ttaaatatct
     3421 taacatacaa attcaagtca tcgtttttat aaggaaattt tttatttaaa ttaagaattt
     3481 taagatgcga tattgaattt aatgtcgtta ttttgtgagt tttgttgata agttctagca
     3541 acaaaatttt taaagtcttt atcaaaattt gaatttttat cgttgttttt tgaatcttta
     3601 tctgtttttt ctaagctatt ttctgaattt ttgtcatctt tttctttatt ttcttcttct
     3661 ttttctttgg cttcttcggc tttaagcttc attgcttcag ctcttgcttc aaattccatt
     3721 tttgcagcat ttgctgcaac tttatagtct tgtgggctag gatcagcagg agccatagct
     3781 gctgctgcga tttgtcttgc attggctata gtttcttctg gtgtgtttcc tttttgcatg
     3841 ctgataggaa cttcacccgc tgtagcatac atttgattat cagggcctct tgtataagta
     3901 aaacttgcag cacctgctaa gccgccaccc gctgcttgat gcgcagcttc atgagccttt
     3961 acatttctat cgatactttg gagttcgcga acttgagcta cttctttttg gcttagctct
     4021 acgccattaa ccatttgggt ttgttcgcca tttttttctt tatcatcttt attttcacta
     4081 agattttttt catctttttg agtggaatca gattgatttg ttttatcaaa agaaggtttg
     4141 ctagagtagt aatcataaga gttataactt gaactaattt gcatttatcc tcctttttgt
     4201 tttttaaatt tttaggaatt ttaacgcatt ttgacttaaa aatttgataa attttgtaaa
     4261 ataatcataa atacaatttc aaaggaatgt aatgatttat gaaaatgatt tgatttatat
     4321 agagaaagag gaggctcaag tgccttggct taaaattttt actaaagaaa tttataaaga
     4381 atttagcgat tgtcctttag agttgcaaaa ggaacttttt gaaaaaattt tactttgtga
     4441 aaaggctatg atagaatttt acaaacctga aaaaatcaat atcgcctctt ttgcaaatta
     4501 tgtgccaagg gtgcattttc atgttatggc aagatttaaa gaagatgcgt tttttccaga
     4561 gtgtatgtgg ggaaaacagc aaagagaaac aataaagctt gatttgccta aatttgaaga
     4621 atttgtaaaa tttttaaata gtaaaatttt ttgattttta ttaatgattt gttatgtttt
     4681 atctaataaa atttttatat tgaaaattac tataaaaaag gaaaaaaatg aaaaaagttt
     4741 tattgagttc attggttgcg gtgtctttgt taagcacagg tttgtttgct aaagaatata
     4801 ctttagataa agcacataca gatgtaggtt ttaaaatcaa acatttacaa attagcaatg
     4861 taaaaggaaa tttcaaagat tattctgcgg tgattgattt tgatcctgcg agtgctgaat
     4921 ttaaaaagct tgatgtaact ataaaaatcg catctgtaaa tacagaaaat caaacaagag
     4981 ataatcactt acaacaagat gattttttca aagcaaaaaa atatcctgat atgactttta
     5041 caatgaaaaa atatgaaaaa atcgataatg aaaaaggcaa aatgacagga actttaacta
     5101 tagctggagt ttctaaagat atcgttttag atgctgaaat cggcggtgta gctaaaggca
     5161 aagatggaaa agaaaaaata ggattttctt taaatggaaa aatcaaacgc tctgatttta
     5221 aatttgcaac aagtacttca actattactt taagtgatga tattaattta aatatcgaag
     5281 ttgaagcgaa cgaaaaataa ttttttagtc taagagtctt gctcttagac tttgtaaatt
     5341 tttatccaaa ttttcttcac tttcttgcca aatcaattta aaatccggtt taaaattttc
     5401 attttctaaa ttaaattccg tgtttttcaa ggtggattct aaaaaagcaa gatgatttaa
     5461 agcttgattt ttatcattaa aaattaaaat aaaatcattt tctacgataa aaatttttgc
     5521 tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg agtttggtat agctttcttt
     5581 ggtatctttt agttcattaa aatgaagcaa ggcaatgata tagttgtttt ttccttttgt
     5641 aaagcgtgta aggctttttt cattgggtag ctttgttaag gtgtcaaaaa aagctaacct
     5701 ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt gcaaattcaa aatatcttat
     5761 tcctgttcct tcttggaata aaaactgaaa atatgcagca aaaaatgcga taagaagata
     5821 atattcttta gttttaaaag ttttgataaa aatgagtatt aagccgacta aaaaaaataa
     5881 aaatcctaat tcactcacag gtttaaaaaa atttaatgta ataaaatgga attctaaacc
     5941 agcgctattg aaagtagtat ttctaggtaa aatgatgctt aaaacgccta tgaaaataag
     6001 ggttgtaatt gaggcgatat tttttttatt taaaattaaa acatgatgtt ttccaaggca
     6061 aaatagagta aaaatcatag gtaaaaacaa agccacaaat aaattagctt gaaaaaaact
     6121 tgtataaaaa taaggcagct tagctcctag taatactaaa gtcaaaaaga aaatttttga
     6181 atttttaaag taaaaggata gcacaagagc tgaaatttca aaaataaaac tcaatgatat
     6241 taaaaaatct aataaaaaca tttcaaatcc ttgattttaa taaaagtgat aattgtatag
     6301 aaaaaagctt aaaagcgggt tttatttaaa tttagcaatt tcatcttgta tggtttgttc
     6361 tatatgaagc aattcttcat gagttttttt gctattttct aaaagttcat caaatttaaa
     6421 gccaagcata acaatacgat ataaattggg tttatatttt ctccaattat ataaagtgct
     6481 aacatcaatg tctagttcat atgccatatc acgct
//
LOCUS       DARGEM010000083         6470 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.083, whole genome shotgun sequence.
ACCESSION   DARGEM010000083 DARGEM010000000
VERSION     DARGEM010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.083"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..203)
                     /locus_tag="SFZ78_001295"
     CDS             complement(<1..203)
                     /locus_tag="SFZ78_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212161.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDEL"
     gene            complement(204..512)
                     /gene="fliN"
                     /locus_tag="SFZ78_001296"
     CDS             complement(204..512)
                     /gene="fliN"
                     /locus_tag="SFZ78_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG8212162.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(512..949)
                     /locus_tag="SFZ78_001297"
     CDS             complement(512..949)
                     /locus_tag="SFZ78_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG8212163.1"
                     /translation="MLKILEYSITHFCEHILKLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRNCYFRIGYCK"
     gene            complement(1020..1769)
                     /locus_tag="SFZ78_001298"
     CDS             complement(1020..1769)
                     /locus_tag="SFZ78_001298"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG8212164.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQSVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(1762..2940)
                     /gene="trpB"
                     /locus_tag="SFZ78_001299"
     CDS             complement(1762..2940)
                     /gene="trpB"
                     /locus_tag="SFZ78_001299"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG8212165.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(2937..3536)
                     /locus_tag="SFZ78_001300"
     CDS             complement(2937..3536)
                     /locus_tag="SFZ78_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG8212166.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(3523..5124)
                     /gene="trpD"
                     /locus_tag="SFZ78_001301"
     CDS             complement(3523..5124)
                     /gene="trpD"
                     /locus_tag="SFZ78_001301"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG8212167.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(5121..6371)
                     /locus_tag="SFZ78_001302"
     CDS             complement(5121..6371)
                     /locus_tag="SFZ78_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8212168.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKHGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
BASE COUNT         2243 a         1231 c          709 g         2287 t
ORIGIN      
        1 tttaattcat ctttagaata cgttaaatca ctaaaagtta aaagagttaa atttttttct
       61 tttttttgag aaatcttgcc attataggca ttatcaaaag aaagcattaa atctactcga
      121 tcatttctat cgtagatatt ataactaatc aactcaacac tatataaagg taaaattaaa
      181 aaaaataata ctagcaatct catttaaatt tcttttttaa agtattgaag cacagtctta
      241 gaatccaaaa tttcattaat tcttatagcg agattttttt cataaaccat aacctcgcct
      301 ttaccaaaaa ttcttttatt gatataaagc tcaacgcttt ctccagcagg cttttcaaga
      361 tcaataaccg agcctacttc aagttttaaa agctccgcta cactcatatt tgtagttcca
      421 agctcgctta caaaatctac tgtaatatct aagatatctt cataagattg taaaagccca
      481 tgatgaatgt taaactctat atcatcgctc attatttgca atatcctatt ctaaaataac
      541 aatttctaaa ataacaattt tcaaatttat aagttaaagc ttcatctaga actatttcag
      601 aaaaatcaac ttttcctaaa tattccggaa ttccgagttt atactcgtca tcacccttgg
      661 catcatttaa caaattttta gcataaccta taatctgatt ggcacattct ttagttaaat
      721 cgcaccagtc atcttcttta aatttttcat cattaattaa aatttctgca atttttttta
      781 aaaattcttt tggaaaaaat aaataaaaat tacattctcc ttcgcttttg cccatgatag
      841 gaatactcgc tccataaagt tcaccgctta tatcttgagc tgcttcaatg cgaagtttta
      901 agatatgctc gcaaaaatga gtgatggaat actcaagaat ctttaacata actaccacct
      961 ttataaaaaa cttaatttaa aattatagta aatataaaat aaaaatatgt tttaaaattt
     1021 tattttttga aaatttcttc aatatctttc attattatat ccaaatttcc ttgtttaaaa
     1081 cactttacta tactagttcc tacaatcact ccgtcagcaa cttttctcat tctttttaca
     1141 tcttgattat tttgaatacc aaaacctaca aaaataggca aatttgtaaa agatctgatt
     1201 tcttttactt tatcttgcaa gattgcttct tcgacacttt tcgtacctgt aatacctata
     1261 cttgctaata aataaataaa acctttagca tgttttacta actttttaac cctttcttta
     1321 ggggttgtaa cgcttacaag tgtgattaaa gctatattat atctttcaca ctctttaatt
     1381 aaatcatcac tttcttcaaa acttaattca ggtacaatca aagcacaaat ccctaaagat
     1441 tttgcttttt tcacaaattt ttccaagcca taagaaaaaa ttaaattata ataaaccata
     1501 aaaaccaaag cttttttagt ttttatccta gctaaaagct caaaaacact atgaatatcc
     1561 acgctttgat caagagctat ttttgccgca tctgcaataa tctcaccatc ggcaatagga
     1621 tcactataag caacaccaag ttctaaaata tcaatagggc tttgatccaa tctttgcaaa
     1681 aaagcttcac ttgtttgaag atttggataa cctaaaaccg tataagccac atttgcattt
     1741 tctttataaa attttctaaa atcaaccata aatcacccct tttttataat ctctaatcat
     1801 ttgcatatct ttatctcccc tgcctgaaag atttactact atcacgcttt tcttttttaa
     1861 agttggacaa agtttttcta aaaatgccaa agcatgcgaa ctttcaatcg ctgcaataat
     1921 accttcttct ttacaaagta attttaaagc ctgcatacat tcttcatcac ttatagcatg
     1981 atattgcgct cttttgcttt caaataaaaa agcatgcaaa ggaccaattc ctggataatc
     2041 aagccctgca gaaacactat gtacaggcaa gatattgcct aaatcatctt gtaaaacctt
     2101 ggttttcata ccgtgaataa tgcctgtttt tcccttattt aaagtcgctg catgataagg
     2161 cgtatcaatg ccaagccccc ctgcttcaat acctataagt ttaacatttt catctttgat
     2221 aaaatcataa aaaatcccag ctgcattgct tccaccccca acagctgcga taatataatc
     2281 tactttttta ttgagttttt gaagttgcat tttgcattct tttcctataa tactttgaaa
     2341 atgcattacc attttaggat aaggataagg acctaccgca cttccaacca cataaaaaat
     2401 atttttaata tctccaaccc aagcttgaat agccgcagta gtagcttctt ttagagtttt
     2461 aagcccactt tgtactgcat gaattttagc acccaaaagc tccattttat aaacatttaa
     2521 agcctgtctt tgcacatcgg ttgcccccat ataaatttca cattcaagtc ctaaaagtgc
     2581 tgctgcagtg gctgttgcaa gcccgtgttg acctgctcct gtttctgcta tgattttttt
     2641 ctttcccatt ttttttgcta aaagggcttg agcgatggca ttattgattt tatgtgctcc
     2701 ggtatgattt aaatcctcgc gttttaaata aatttcatgc tgatattttt tgcttaaatt
     2761 tctagcaaaa taaagtggag taggacgccc tacataagtt tttaaaagct cgtttaattc
     2821 ttttttaaag agtttatctt tagaaaattt caaaaaagca ccttctagct catttaaagc
     2881 aaacattgca ctttcaggca aaaactgccc accaaaatcc ccataatacg cttttttcat
     2941 tttttcaact cctttaaaat ttgttttatt ttgttgatat cttttaagcc tttttcatct
     3001 tcaagttttg aattaagatc taaaatttta gctcccgttt gtacagcctt atgaacatta
     3061 tccaaaccta tgcctccggc taatataaaa tctttagtat aagaacctaa taaagtccaa
     3121 tcaaaactta ttccattacc gccctttaaa attcccttag catcaaaaag tactaaatta
     3181 gcaaaaattt cactttttaa atctaaacta ttttccacac taatcacctg ccaaacaaaa
     3241 acattttgca cctttaaaat ttcaaattct tctttggtaa tagtgcgata aatttgtatc
     3301 ccatcaagct tagcttcttt aatacatctt aaaatttgtt ccaaattttc atctacaaaa
     3361 acaccgacaa cttttttatc tttttcatga aaaattgcac ttaaatttct tgcttgttct
     3421 aaactcactc ttcttggact tttagcaaaa ataagtccaa aaaaatcaat atttaaaaaa
     3481 gctaaatctt tggcattttt ttcatcttta ataccacaaa ttttaagctt tagcataagc
     3541 ttgatactcc ttaaaatatt ctataacctt acctgaataa atggcttcta aaatcatatc
     3601 tttagccact aaaggcgaac ttgctttatt ggctgtataa agtgcaaaca tagcatttaa
     3661 aactaccaaa tcaaattttg ccccttgcat tctaccgctt aaaatatctt ttaaatcttt
     3721 agcgttgtca tatgcactag atcctatgat ttcactatga aaagctcttt taaaaccaaa
     3781 ttgttcagga cagatagaat actctaaaat ttctccttca caaagctcat aaattttact
     3841 ttcatcgcaa atactaagct catccatacc atcatttcct cttaccacta aagctttttt
     3901 gcgtcctaaa ttttttaaaa cctctatcaa aagcctatgc acaggtgcgt gataatttcc
     3961 cataagttga tattttaact ttaaattagg gtgcaataaa ggacctaaaa cattaaaaac
     4021 cgttcttact ccaagtcttg atctgatctc tttaagttct cctactaaag gatgaaaaaa
     4081 tggagcatgt aaaaaactaa gcccttgatt atttagttgt tttaaaactg attctaaagt
     4141 gtttggagta gttatattta aagcttctaa cacatctgta cttccgctag aacttgaaat
     4201 ggcacgattt ccgtgtttgg ctacttttac tcctaaagct gctaaaataa aagcactagt
     4261 cgtagaaaca ttgatacttt taaaaccatc tccacctgtt ccacaaatat caatcatctc
     4321 actctcatca ctaaaagttt gagaatatct taaaatttgt cttacaaaag cacttaaaga
     4381 tttttcgttt aaagactttt cagtgattaa aatcaacaaa gccgctactt gtaaaatttc
     4441 ataatcttta gacataataa tcttacaaat ttgctcaaaa tcatcgcttt gtaaaaaatg
     4501 attttcactc attttttgca aataaaaact taaaggattt tcttgttttt gtggtttttt
     4561 tatatcttgt tttaaaaaat tagaaaaaag ttgtaagcca tattcactaa aatagctttc
     4621 aggatgaaat tgcacaccat aataaggtaa atttttatgt cccaaagcca taatcacacc
     4681 cttttcatca agggctaaaa tttcaagctc atcactaagc tgtttaacct ctaaagaatg
     4741 ataacgcatt acactaaaat ttgaaggcaa attagaaaat aattcatttt ccctgcactg
     4801 ttttatcaaa gaattttttg catgcatagg ctcttgcatc ttaaccacta aagaatcaaa
     4861 agctaaagct aaagcttgat gtcctaagca aatgcccaaa acagggatat taagccttgc
     4921 tttaaaaatt tcaagacaaa tcccactttg acttggatgc tttggaccag gacttaaaat
     4981 aatatgagta ggatttaaat ttttaatttc actcagagaa attgcatcat ttcttcttac
     5041 taaaatttca tcattgctga gttgctctaa catgctttta acattaaaaa caaaagaatc
     5101 ataattatca attaaaagta tcattgattt tcctttttta aattttcaaa agctaccaaa
     5161 agcgccttgc gtttagcaca aatttctgca tattcttttt gactctcact ttgcaaaaca
     5221 atacccgccc cacttgccaa ataagcctta tcttgagtaa aaaaagcgca acggattaaa
     5281 atcgctaaag ttatgtcttc gttaaaattt aaaaatccta ccgcaccacc ataaattcca
     5341 cgatcgcaat cttcaagctc gctagtgatc tctaaagctc ttattttagg agctccgctt
     5401 aaagttcccg ctggaaaaac tgcttcaatc acatcaaaaa tactcgcatc ttctttcata
     5461 ttggcataca cttcactcac tatgtgcatt acaaatttat ttttaataat agaaaaaaga
     5521 ttttccactc ttgtttgagt gccaaattta gaagcatcat ttcttgctaa atctacaagc
     5581 atcttatgtt cactaagttc tttttcatca cttaaaagat ctttttctaa agctaaaaga
     5641 tcacagttat tttccaaatt tctagttcca gcaatagggg ctaaataaat ctctcttttt
     5701 ttaattttca ataaaaactc tggagaagaa cccaaaacaa caccatgttt acttggaaaa
     5761 taaaacatat aagcgcttgg atttaaagca cttaaactct cataataatc aaaagcattt
     5821 acttgatgtt tgatacaaag ttgcttactt aagaccactt gaaaaatatc tccacttaaa
     5881 agatattctt tggctttttc gcacattttt aaaaaatcat ttttttcatc ttctaaagaa
     5941 tttaaaattt caaaatcatt tttttgtttc tttttcattg gttcaatatc atcttttaaa
     6001 tattcaaaat attttgaagc accaaattta aaaaacatct tgctattttt ctcataaatc
     6061 aaataagctt tagcattggc aaataaaaat aaaggaaaat cataattttt cttagaagaa
     6121 agtggaattt tttcaaacaa agatacaaaa tttgcactaa aaactccaaa aaatccagca
     6181 aagtcgcaaa ttttattctt gcttaaagct tcataatatt ttgccttaaa ctcgctaaag
     6241 gataattcat tagcatctaa ataatcacaa tcaatcccta taattacctt agtcaaatcc
     6301 tctgcaaaat aagaattttc aaatttttca aggatttgtc tgtaataaaa atttacattt
     6361 ttaacaaaca taataaacct tttttaaaaa aaataaatta aaataatatt aaagaaaaaa
     6421 tttagataaa aagaagttta gaaacgccaa gagcgaagag tgtgtgtaag
//
LOCUS       DARGEM010000084         6465 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.084, whole genome shotgun sequence.
ACCESSION   DARGEM010000084 DARGEM010000000
VERSION     DARGEM010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6465
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.084"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            778..3603
                     /locus_tag="SFZ78_001303"
                     /pseudo
     CDS             778..3603
                     /locus_tag="SFZ78_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(3871..4153)
                     /locus_tag="SFZ78_001304"
                     /pseudo
     CDS             complement(3871..4153)
                     /locus_tag="SFZ78_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
     gene            complement(4140..4367)
                     /locus_tag="SFZ78_001305"
     CDS             complement(4140..4367)
                     /locus_tag="SFZ78_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212169.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            4640..4780
                     /locus_tag="SFZ78_001306"
     CDS             4640..4780
                     /locus_tag="SFZ78_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212170.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            4787..5074
                     /locus_tag="SFZ78_001307"
     CDS             4787..5074
                     /locus_tag="SFZ78_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEG8212171.1"
                     /translation="MKYIELSEAIAIHEKIIEKTGGLSGYNETQIGYLASALEHIKND
                     DYYPTITDKITHLIFSCVKFHPFADGNKRTSIFLGMHFLDLDKILPKNMNS"
     gene            5274..5417
                     /locus_tag="SFZ78_001308"
     CDS             5274..5417
                     /locus_tag="SFZ78_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212172.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(5733..5960)
                     /locus_tag="SFZ78_001309"
     CDS             complement(5733..5960)
                     /locus_tag="SFZ78_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HEG8212173.1"
                     /translation="MNNVLLHRITEKGNIRYYSIEIITTLFEEYMVERVYGNVRFKSC
                     TGRKNNVFPSFNEAQIFFEKLKKQKMKKGYA"
     gene            complement(5972..6202)
                     /locus_tag="SFZ78_001310"
     CDS             complement(5972..6202)
                     /locus_tag="SFZ78_001310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212174.1"
                     /translation="MEKNTINNENIQKNEILIPKRVLFDEKTLKMIEMMIPAYKDEIS
                     NVAKENEKINQMIKLAIEKMFKNDFLNKINNF"
BASE COUNT         2324 a          897 c         1034 g         2210 t
ORIGIN      
        1 ttcaacttta atgcaaacta tgcaaaatat acaatcaaaa aatgaatata actcaaaaaa
       61 ctttgataaa gatagtatct ttttatctaa tatgattatg aatgtgagat tgaagtaagt
      121 ataagtaaat gatagatttg gtaaatttaa atcttgctaa gtttattatt tagttcaaat
      181 aaaaatataa aaaaatatag aaattcaata gaaagaagag aagcttagtt aaaagtttgt
      241 ttggtaagcc acaagggagt ttcgcccctt aaaaaagggg caaggctaat aagccttgac
      301 agtaattata taaattagta taattataag tacgaaacga aacatagttt cacccccttt
      361 ctagggcgtg attatgccac agggttgcag ccttgtggca aaacccttaa tgcaattata
      421 ccaaacaaat tctttgactt cttaatacat tttatttatg attgaatctt atcttttagc
      481 ataagcaaga aaaatataaa ttaaaaaata aaataaatca atagaaagga agataggctt
      541 agttaaaagt ttgtttggtt aaaccaaagg gattgttcta aaccctgcaa aagcagggga
      601 tactcaataa gccttgacat agcaaagcat taagagtata attattagaa caattttgag
      661 cattaaaact cacctccctt ctgggcggta aattaacgct aaagggttgc agccctttgg
      721 cgttgcaccc ttttataatt acaccaaaca aactctttaa cttctttaat ataatccatg
      781 aaaagatttt acttgttatt ctttagcact ttgttttttg caccttcatt tttatttggt
      841 gctacaaaca tagctaatgg aaatctaatc tatacttggg gttatggcga tgtgataaat
      901 gaaatcatgc aggcggttaa aggtataacc actgaaacag attatatcgt taatgcagcc
      961 ttggctattt tattattgct tttcagtatc aaaaaagcaa tggatggaca aacaagtcct
     1021 gtgtttgaat ttggaaaaat gtttatgctt tttgctgtag tgtggtacat gtttttaaaa
     1081 gcaccaaatg acaataatca ccgcttcatg atttacgatg aagtcactag caaagattat
     1141 gtcatttctc aaattcctat aggcatagga aaaagctttg cattgatgac gcaatttgag
     1201 aaggttatcc tagaagctat ggaaaaacat ttttcaactc cacaatctac aaatttttct
     1261 aatgcaggtt taggtttttc acttcaagtg atgagtactt tgccaagctt aaagctttcg
     1321 gctattgatg caactttgca aaaaaatatt gatttttatt ttagaaactg cgtttcagta
     1381 ggtatcttgc ttaatcaaca aggtagaaat ctttttcaaa actctgataa tttaatacaa
     1441 gatcttttca caaacatagg caatggctct cagcttactc ctttgtttga aaataacaat
     1501 aatattgaaa aacaaagtgt tgtgccctgt tctgatgcag gtcctcaaat cgttgaaatg
     1561 attaaaaacg atacagatga agctatgaag attcatgctg ctttgcttgg tatggcgaat
     1621 gatatggcaa attatgagca aaagttctta ggcgctgcac aaatctataa cgaacaagct
     1681 gtaagtgcta gatcttattt gcaacaatcc atgataatgc ttgcttctca agatgcaatc
     1741 attaataccg ctaaatcagt aggtttaaat cctgcttctg tggctgcaaa tactgcttat
     1801 gcggatcagc aattttatgc aagtatgcaa gcacaaggac acttggcaca aacttatttg
     1861 cctttagcta aagcttattt aacagctatt atcataggtt tgtcttggct tgttgctttg
     1921 ctttctattg tgtttggctc ttatgctcat attaagatgt tttttactct atgtatttgg
     1981 atagtacttt ggactcctat actttgtatt attaatttta taaatgattt taatcttatg
     2041 aatgttgcac aggtgataac aggtggaaaa gcagctttaa gcttaggaga taacattctt
     2101 atattcaaag aagtagcaaa tagatcaaat ttcatgaatt atcttgtaat gagtactcct
     2161 gttttagctt atgctatagc taaagcaagt gaacaaggat ttgtaacttt tgcttctgga
     2221 ttatctcaag ctctaacagg tgcttcaaga gctgctggaa gctttgcaaa tcagcaagcc
     2281 ttatctacac aaactagcat tgctgctcct agaggagatg aagtttgggc gatgaatgca
     2341 ggggtgatga gcttgcaaag tgctataagt gcagggggtg gtagattagc atgtctagta
     2401 taacaggggg tggaacaaca gctagagatg tgaatacagg tacaagtttt gctttgggaa
     2461 atcatggtga aatttctaat atgaatagga cttgatgcaa aacacgcaca aagcgaaact
     2521 caaactagac aagattctct tgctaattct attgccgata ctcacaaaac aggcattaat
     2581 cacggtatta cctctgatta tcttagaaat catggtgcag gagtagaaga tactaaagca
     2641 attgagaaag cagaaacgaa agctttaaaa gaaactatga atgaagcatt aagcgataaa
     2701 tctagcttct ctgaaacaga caaaaaagct ttagaaggaa gtattagcgc ttatgctagt
     2761 ggctcagcag ggattgaaat ctttggaaat ggtggaaaaa taggtggaga aattaaaggg
     2821 acagcttcaa taggcacagg ctcaactgaa acacaagaat attcaagaag cctaagtaaa
     2881 gaagggtagg ctgcatttga taaaatgtat gctgaaaaac ttggcaatat cattaaatct
     2941 aatgatagtg tggcttctgc ttattctaat gctctatcta caagcacagg tagtgaattt
     3001 gctgatgcca aacaaaaagc acattcttat agtgaagcaa gtcaatacag tgaagctata
     3061 caggcaagta attttaccta atatggctga aaattacatt gctgaaaata atttgggtgg
     3121 aactagagaa caacaagttg ctgctgcagc taaagggtta gaaaacttag ccgcaagggg
     3181 agatttgcaa ggcttgttgc attatgctaa tatgaataca gctaagccaa atgctgatag
     3241 aaatcatgat gttagcaata aatcttatta cagtccttca agtgtaggag ctaataatgc
     3301 tcataataat gatgcagtag ctaatcaaaa taagttaaac agcttaggaa caacaggggg
     3361 ggggataata taagaaatga atttaaccaa caaagtgggg ctgctataag taatttcaaa
     3421 aatcaaggaa caagtacttc taatgtggtc aataatagtg ctaaagatgc catagtagaa
     3481 caagatgcta acaggagaat gggagtaaat cctagctctt atataataca agatgcaagt
     3541 aaatcaggta atgagcttgc aaaagaagct caaggtttat ttgatgctat gagcaaaaaa
     3601 taagtctagc tttttagtta ggcttagtga tctcgtatag caccgaatat ataatcaaat
     3661 ttacgaggat cgctttctat atatccccca atttcacttg ttcccccatg ctttttctca
     3721 tcatagggaa ctatttttat atttttagca aggaataaca caaaagcaaa acaatagctg
     3781 caactccgca agaaagccaa agaacaagta tgagtttttc ggttgtagtc acttttgctt
     3841 ttttcctaca tttatccatc tttattcctt tcaatatttt ttaaataact tactatgact
     3901 acctagtttt aaaatattta gctctaactc attattatgt ttttgataaa ttaataacaa
     3961 gttagacttt atatgacatt ctctaaaatc ttttaataca ccttttaatt gatgatcttt
     4021 atatttaggt tctaaattct catcattaga aagttttaca ataacttcat cagttatttt
     4081 acgctcttca tcgcttattt tttttgcaag cttttataaa atctttatgg taataaattt
     4141 tatattttgc cattttgata agctttcaca aagtcttgat gcgaattaaa gcttaatgca
     4201 gtattgactt ttttttcttt atcaagttct ttgcttgcat ttaatatctt actttcaaaa
     4261 ctactcaact taggcttaga aattttacat ttggcattta tgctttttgc taaacccttg
     4321 aatgcaggta aaaaattttc attaacattt tcaataataa gagtcataag caactccttt
     4381 ctcaatttat ataacgtaat tataccattt tttaataatt tttgcaagta tttttgttac
     4441 agaatgccta ttttttaggg gtttgaaacg gatttttttt gacttgattg ttttatttat
     4501 tgcttaatga aaattaattt gggtataatt agcaaattaa tttttttagc ttcatattga
     4561 tttgctaatc aaatataaat gttaaaatag tctatacagt atttaggata ttaattgaaa
     4621 gaataaagag ggtagtaaaa tgaaaaccac agaatataat acgcaacaaa aaaataataa
     4681 agaatattta gctgagagag aagcagttaa aaaaaactat ggcaaaaatg gaaaaagagt
     4741 tagaaaaacc tgctataaat gcggtgtttc aaagacttaa aaataaatga aatatataga
     4801 actaagcgaa gctattgcta tacacgaaaa gattattgaa aaaacaggtg gattaagtgg
     4861 ttataatgaa acacaaatag gatatttggc tagtgcatta gagcatataa aaaacgatga
     4921 ttattatcct acaataactg ataaaattac acatttaata ttttcctgtg taaaatttca
     4981 tccatttgct gatggaaata aacggacttc gatatttcta ggtatgcact ttttagattt
     5041 agataagatt ttaccaaaga atatgaattc ataggtagtc ttactttaga tgatatagta
     5101 aaacacaaac aaagtgatga agtttttaaa gtgttttata aaaaagatga taaaataaga
     5161 ttgcttagag ttagtaatat gcaagcttta aatcgttttg ataaacttaa aggtgcaatg
     5221 acaaaaataa ttttagatag tggttttaaa cctgataaat aaaaaggatt aatatgtgta
     5281 aagatcaaga atatatagag caaagaaagg ttttatggga aaaaagtttt gaagccttta
     5341 aagatgataa agtgtatcaa aaagaacagc ttgaacttgc agaagcagga attaatgatg
     5401 gcttagagga ggattaatta tataattagc catatatttt atattagttt ttttaaaaaa
     5461 ccgtttttac tatattcttt aatcttttgt attgtatttt gattgtctta tttatgtaat
     5521 tttatatata aaaaaagttt tttccaattt tacaacaaaa tcctttatgg tataataaaa
     5581 ataaaaatta tataagaaag gatacaaatg gctataaaaa ttgaaattag cggatttgat
     5641 aaggattttt tacctgtttt tgagagttta gctaaaagct tatctcaaaa gcctatttta
     5701 tcaatgtttt ttcttatttt ttgagcaaaa acttacgcat accctttttt cattttttgt
     5761 ttctttaact tctcaaaaaa aatttgtgcc tcattaaaac ttggaaatac attatttttt
     5821 cttcctgtgc aacttttaaa acgcacattt ccgtaaactc tctcaaccat atattcctca
     5881 aatagagtgg taataatttc tatgctataa tagcgaatgt ttcctttctc agttattctg
     5941 tgcaacaaaa cattattcat aaaaaaccta attaaaaatt atttatttta ttcaaaaaat
     6001 catttttaaa cattttttct atagcaagct taatcatttg attaattttc tcattttctt
     6061 tagctacatt agaaatttca tctttgtaag caggaatcat catttctatc atttttaatg
     6121 ttttttcatc aaataatact ctttttggaa ttaatatttc atttttttga atattttcat
     6181 tatttattgt atttttttcc atttttatcc tttatttgtt aaaatatata aattatacca
     6241 taatattaat aaaaaattgt ataaatagac aaataatgca aaaatataaa tatttttatg
     6301 atataattta aaatatataa cataatattt aattatgtta taaaaaaagg atataaataa
     6361 aatgaaactt aaaaatacta caataagtga agatttagag cgttggatag aaacttattt
     6421 gaaacatatt caagcattat cctattcaaa taatacttct ttact
//
LOCUS       DARGEM010000085         6404 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.085, whole genome shotgun sequence.
ACCESSION   DARGEM010000085 DARGEM010000000
VERSION     DARGEM010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6404
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.085"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            143..995
                     /locus_tag="SFZ78_001311"
                     /pseudo
     CDS             143..995
                     /locus_tag="SFZ78_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
     gene            992..3259
                     /locus_tag="SFZ78_001312"
     CDS             992..3259
                     /locus_tag="SFZ78_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8212175.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINPFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKIPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            3272..4033
                     /locus_tag="SFZ78_001313"
     CDS             3272..4033
                     /locus_tag="SFZ78_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8212176.1"
                     /translation="MLKKIFLFCFLLLNLNAEVNVTDTNLSFDSPKIEAEVPKIELSL
                     SSLYQNADEVVKGVIYILVLFSVLAWAVFISKLMQFYFMKKNLDFSIHKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            4020..4430
                     /locus_tag="SFZ78_001314"
     CDS             4020..4430
                     /locus_tag="SFZ78_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG8212177.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            4432..5178
                     /locus_tag="SFZ78_001315"
     CDS             4432..5178
                     /locus_tag="SFZ78_001315"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8212178.1"
                     /translation="MKSSVIFGFVLSLILHALVLMFFLFSFYTQEKSSGVDFKQGLEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEVANASENSKFKNESFSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEVLSLFKRASPLP
                     KPPKEMLKDGEKISFVMPIDYNIKDYLGKK"
     gene            5234..>6404
                     /locus_tag="SFZ78_001316"
     CDS             5234..>6404
                     /locus_tag="SFZ78_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG8212179.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYMQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNTTQKAEEKFENNASLIQEANQKAQENFQKANFINKGALYYYQSL
                     LEYFFNSRAMIEKESYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIRALMTLVAFIPILWTLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE"
BASE COUNT         2299 a          863 c         1113 g         2129 t
ORIGIN      
        1 taaatatttt cattttatta taataaattt tgataataat tataaataat taaattttaa
       61 tataaatatt taatagtatt tttatatata aaatattaat attcaatatc aaaaataaac
      121 cactaagaaa gtaacaataa taatgaaatt ttatactatt ttaagcattc tatttataag
      181 ctttatgttg agcgcttgtg ctgttttgca aaaatcatct ccacttcaag aaaataaaga
      241 tttttatata cttgatacgc atactcaaaa aaagatttct tttgaagata tgattttaga
      301 attgctaaaa gcagatgtga tactgcttgg cgaaaaacac gatgaggtta aacataagat
      361 aagtcaagtt atgattttta atgccttaga aggaaattta agttctcaaa atataaactt
      421 tgatgtagct ttagaaatgt tagcaagcac agagcaaaat cacttagata aagcttttaa
      481 aaataaaaaa aaccattaaa gccaatgaac ttactaatgc attaaattgg gataaggtct
      541 ggaaatggaa agattatgag caatttgtca atgtggtttt ttattcaaag tcaaaaatat
      601 taggtgcaaa tctttcacgc tcagaaatta caagtattta taatggggct cagcccttaa
      661 agggttatgt ttcaaccaca aatgaagtaa aaaaacaact ttttgacatt atatccttaa
      721 gccataagct aaatcctgaa gaaaataaag aattactaga taaattggtg gaaattcaac
      781 aattcaaaga caggcgtatg gctgatgtat tggttcatca tgtaaataaa gttttattgc
      841 tagctggaag ctatcataca agtaaaaaaa taggaattcc tttacatata caagatttta
      901 aaagcagtaa aaaaatagtt gtagtgaatt taagctatgg agaaatagat ttaaaagaca
      961 gtgattatgt tttgatttat aagggggagg aatgaaaaaa ttaagtttat tttgtgctgt
     1021 aggtttatgt tttgctagtt ttgctttttc tgaagaatta gaatttgata gtcttgaaat
     1081 ttcaggttca aaaatcaaaa acgatgaaaa accttttgta actcctggag caacaagcac
     1141 aagagagggt ataggttcag atacgcaaag tatagattct atagtgcgta gtatacctgg
     1201 aacctacaca aacacagatc aagctcaagg tacagttcaa gtaaatattc gtggtatgag
     1261 tggttttggg cgtgttaata ccatgattga cggtgttact caaacttttt atggtagtgc
     1321 atcagatgat ccagctagat ttcattcaca aacgggaact tcagcttttg gagctgttat
     1381 tgatacaaat ttcttaatcg gagttgatgt tacaagggga acttttgaag gagtaggtgg
     1441 agcaaatgcc ttgatgggat cagcaaattt taagaccata ggtataaatg atattgtaca
     1501 tgatggcaat atctttggat ttttaggacg attttcttat ggaagcaatg gaatcggacc
     1561 aagttatatg agtgcagtgg ctggaaagac tgaacttgaa aataatggat atgtgggcgc
     1621 gctttttggt tatagcgcaa agagaattac tcaaaattac actgtaggcg ggggtggcaa
     1681 gataggtagt agtatggttg atactgatgg agatggtata gctgatacca atatcgctcc
     1741 ttttgatcca gattttttaa cccaaaaacc aaactctcaa ctttttaaac tcgaatatgt
     1801 cccaaattct tttacaaaca ctatattttc ttatcgtaga tatcaaaacg aacttgccgg
     1861 tagaaaaata cacaatgaca attatcaact tgatttttgg cacaacccta atgagtggct
     1921 taatgtaaat acgcttattg cctacaatca aggcatacaa acctatggat caaaatctac
     1981 ttttgcggca aacgatgcca tagctaacac aaaggcaaaa aatactgcca ctacttttga
     2041 tataagtgat actttagagg gtgaatggca tggatttaat ctaaacacac gctttggagc
     2101 aaatattttg cttaatgatt ataaaaatac cttaaataca tcaattcaag gagtaaattc
     2161 tatacctttt cagcctcgtg gaaaacaaaa tctttttact tattatcttg ataatagtct
     2221 aaattatggt atctttacac ttgatactaa tgtgaatctt ttagattgga atatcaaagg
     2281 acacagacct gcttgcgatg aagtaaattt tatgtgtttt ccaaaagcgg cgacagatat
     2341 agataaaaat ggacttcgct tgaatgcttc tgtcatgctt tcagctgcca tacacgagct
     2401 ttttacaccc tttgtaagtt ttgcgagaac aaatagagcc cctaatgtgc aagaaatgtt
     2461 tttctcaaat aacgaaggca atggtatcaa tcctttctta aaaccagaac aagccaatac
     2521 ttggcaaata ggttttaatt cttttaaaca tggactttta aaagatgatg atcgctttgg
     2581 ttttaaagcc gtgtattatc atacaaaaat aaaagattat atttataatg aacaatttta
     2641 tcttgaagat ccaagtaaaa ttcctccaag ctcgcaattt tatatgcact taaattcagc
     2701 tgatgatact atatttaagg gtgtggagtt agaattaagc tatgacttgg gttttgctta
     2761 tgctaaagct atgtattcaa gacaagatac aagttcgact atttctcaaa cttcaggacc
     2821 tcttcttggc tctttttcgg caagtaaaat catggagctt ccaaaagatt atgcaaatgt
     2881 agagcttggc tttaggctaa atgacaaaat aagctttggt ggtatagcaa aatacacagg
     2941 caaagcaaaa agggtaaatc caaatacaga tgattggaat aaggatccaa acaatcctta
     3001 ttatcctaaa ccaaccacac aagacttacc aaaaattcct attatagtag atttatattg
     3061 gaatatagaa tggtttaaaa acctcacaat gagagcagag gtgcaaaatt tatttgataa
     3121 aaactacatg gatgccttaa atgcttataa ttccttagat aatcagcttc aatataatgg
     3181 agcaggtgat cctatctatc tttttagcaa ttctgctcgc ggtcgcacct ttatagtaag
     3241 ttttgaatat aaatattaag gaaatatata aatgctaaaa aaaatatttt tattttgttt
     3301 tttattgtta aatttaaatg ctgaagtgaa tgtaacagat acaaatttat cttttgattc
     3361 tcctaaaata gaagccgaag taccaaaaat agagctttct ctttctagtc tttatcaaaa
     3421 cgctgatgag gtggtaaaag gtgttattta tatattggtt ttattttctg ttttagcatg
     3481 ggcggttttt atttctaagc ttatgcaatt ttattttatg aagaaaaatt tagacttctc
     3541 tatacacaag ataaaagaat taaaaaatct caatgaatta gatcagacaa aggattttgc
     3601 aggtgtttta tctttagaaa ttcaagatga gcttgaaaaa agtgaatata aaaatgatca
     3661 cataaaagag cgtatagaat tgcgtttgca aaataccatc tcaaagcaaa tcacagcaag
     3721 caaaaatggc ttgagcttgc ttgcgagtat aggtgctagc gcacctttta tagggctttt
     3781 tggaacagtt tggggaatta tgaatgcatt tataggtata gcaaatcttg gcaatgcttc
     3841 tttggcagtc gttgcgcctg gtatagctga agccttgttt gctacagctt ttggcttgat
     3901 agctgctatc cctgcggtgc ttttttataa ttatcttaca agaaaaaatt taaaacttat
     3961 gcaccattta gatgagcttg caaattttgt ctatatactt tttcatagga gttattttaa
     4021 tgataaaaac tgaaatggct cacaaagaag aggagttaag tgagatcaat ataactcctt
     4081 ttatagatat tatgcttgta ttattgattg tttttatggc tgttactcct cttatcacaa
     4141 gttctatcaa aatagaatta cccaagagtt cgcagcaagc agaggataag cttaaaaatc
     4201 ccatcatact ttatttaaat actgataata ctttggctat taatgatgat aaattaagcc
     4261 tagaaaatct ttcaagtgct ttagatataa aaaccaaagg caataaagaa gaaattattt
     4321 attttcatat cgataaaagt gtaaagtatg aagatattat gcaagtaatg caaaaattaa
     4381 aagagaatgg ctatggaaaa atagctcttt caagtaaaaa gatggattag tatgaagtct
     4441 agtgtgattt ttgggtttgt gttaagtttg atattacatg ctttagtatt aatgtttttc
     4501 cttttttctt tttatactca agaaaaatca agtggtgttg attttaaaca aggattagaa
     4561 tttacttcca ttatgatggt atcagagctt cctatcgggg aattaaaaga agtttcgatc
     4621 gatcaaaaaa agagtaattc tcaagataaa aacaaaaaac aagacgaaag aataagtctt
     4681 aattctcaag ataaaaatgc tgtattaaaa gttcaaaaaa agattgaaaa gcaagatgaa
     4741 aaccaagctc aaaaagaagt agctaatgca agtgaaaatt caaaatttaa aaatgaatcg
     4801 ttcagtgctc cgctacaaag taatgaagat aaaacacaaa ctatagtaag tggcaatgcc
     4861 aaagaacaag ttaaaagcta tcaagctttg cttatggctc atttgactaa atttaaaaaa
     4921 tatcctcaag aagcgataat gcaaaaacaa gaaggcgttg taagaattcg cgtaagcatt
     4981 gatgaaagcg gaaatgtctt aagcaaagag cttaaaaaat cttgccctta tgcagcgctc
     5041 aatgatgaag ttttaagttt atttaaaaga gcttctccat tgccaaaacc gcctaaagaa
     5101 atgttgaaag atggtgaaaa aattagtttt gttatgccta ttgattacaa tattaaagac
     5161 tatttaggta aaaaataaac tcttgattaa ataaaattga ttaaaatttt cgttttgaga
     5221 ttaaggcggt ggtatgtttt cttcgttttt tgcaagtaaa aaatgggctt tatgggctta
     5281 tttggggctt tttttgcttt tatttttctt atatatgcaa acaagcttaa atgttgcgat
     5341 caattcatgg tatagtgatt tttataatgt tttacaaaaa ccaaaaatag agcttttaga
     5401 ttctaataca acgcaaaagg cggaagagaa atttgaaaac aatgcaagtt taatccaaga
     5461 ggccaatcaa aaagcacaag aaaatttcca aaaagctaat tttatcaata aaggcgcact
     5521 ttattattat caaagtttat tggaatattt ttttaattct agggctatga ttgaaaaaga
     5581 aagctattct gcgagtgatt tttatgcttt gattttagta tttttagcta ttgctattcc
     5641 ttatgtttta attgcaacga ttaatattta ttttgctagt gtttacgcct ttaagtggcg
     5701 tgaagctatg actttttctt atttgaaatt ttggaaaaat aaagatgata acatagaagg
     5761 aagttcgcaa agaattcaag aagatactta taatttttct aaaattgtag aaagcttagg
     5821 acttagtttt ataagagctt taatgactct tgtagctttt ataccgattt tatggacttt
     5881 aagcgatgtt gtaagcaagg ctttatttgc aaatttaagt gagaattcta gcttttattt
     5941 tttaaaaaac atcgatggtt tgcttgttta tgttgcactt ttgatttctt taggaggatt
     6001 aatcgtatcg tggtttgtag gaattaaact tccaggactt gaatacaaca atcaaaaagc
     6061 cgaagcagct tttagaaaag agcttgttta tgctgaagat aaccgcaaag aatacgctaa
     6121 aaatgagact atgatagagc tttttacagg gcttaaattt aactataaaa gacttttttt
     6181 acattatgga tattttaata tttggctcat tttatttgag caaatgatag ttatagtgcc
     6241 atttttaatc atggcaccag ggctttttgc tggagctata ggacttggta ttgtaatgca
     6301 gattaataat gcatttgatc aagtgcgaag ctcttttagt gtttttatca caaactggac
     6361 aactatcact caacttagaa gtatatataa gcgtttaaaa gaat
//
LOCUS       DARGEM010000086         6383 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.086, whole genome shotgun sequence.
ACCESSION   DARGEM010000086 DARGEM010000000
VERSION     DARGEM010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.086"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..681
                     /locus_tag="SFZ78_001317"
     CDS             <1..681
                     /locus_tag="SFZ78_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212180.1"
                     /translation="LTFYLTEQNKLQNADLKLKDLELKLKELDLKLKEEELKNKKTQN
                     EYIKKIEENHKIYRLLSNFYKKVENYEKIKKIGYQFNNSNELIIEREQFKSFIIEENK
                     DIETIEEAEIEIISPVLKEGKYKWRGIYNGEKIDFSMGDSGFKNAVIRQEYNFINGTT
                     INCQLEISKTFDDYGEEIKTSYRVKKVYSIQANDISKITKFGQKRRKQKEESLEPTLF
                     DFTKDTKD"
     gene            684..3599
                     /locus_tag="SFZ78_001318"
     CDS             684..3599
                     /locus_tag="SFZ78_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG8212181.1"
                     /translation="MTNYQEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFEN
                     FLQATQSVALEELKKRCGQNYKKELFDRIFSQIKTKGIVKALQGYVEIKGIKIYLAFA
                     KPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ
                     NVFHAIKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGS
                     GKIGLANGAGNPSSDGIKTAYLWEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQ
                     FDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVV
                     TDRKVLDSQIRENVKSFSQTKNLVEVITHGSKQLKNALEEGKKIIITTIQKFPFILDE
                     IKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQS
                     NASYFAFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYSMKQAIEEGFILDVLKGYTTY
                     KSYYKIISCTNDNPKYDKKRANAKLKAYVQNNIRTIEQKSQIMCEHFFQNSFKKIKGK
                     AKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESALNGFAE
                     NVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNK
                     ENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDF
                     ANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDI
                     ELEKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPS
                     FADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRET
                     FSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            3626..4657
                     /locus_tag="SFZ78_001319"
     CDS             3626..4657
                     /locus_tag="SFZ78_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8212182.1"
                     /translation="MFVSVDFFKTFDISNNERSKAKKVQGKKYEIFLNENEHSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILID
                     PIFNTHASPISFTNKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKF
                     KQDFWWKEE"
     gene            4727..5068
                     /locus_tag="SFZ78_001320"
     CDS             4727..5068
                     /locus_tag="SFZ78_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8212183.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(5091..6257)
                     /locus_tag="SFZ78_001321"
     CDS             complement(5091..6257)
                     /locus_tag="SFZ78_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG8212184.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGLERIANFIASY"
BASE COUNT         2428 a          861 c         1057 g         2037 t
ORIGIN      
        1 ttaacttttt acttaacaga acaaaataag ttacaaaatg cagatttgaa attaaaagat
       61 cttgagctta agctaaaaga acttgatttg aaattaaaag aagaagaatt aaaaaataaa
      121 aaaactcaaa atgaatatat taaaaaaata gaagaaaatc ataaaatata tagattatta
      181 tcaaattttt ataaaaaagt agaaaattat gaaaaaatta aaaaaatagg atatcaattt
      241 aacaattcaa atgaattaat tattgaacga gaacaattta aatcttttat tattgaagag
      301 aataaagata tagaaaccat tgaagaagct gaaatagaaa tcatatcacc tgtattaaaa
      361 gaaggtaaat ataaatggag gggtatttat aatggagaaa aaattgattt tagtatgggt
      421 gatagtggtt ttaaaaatgc tgtcattagg caagaatata attttattaa tggaacgact
      481 attaattgtc aattggaaat cagtaaaact tttgatgatt atggagaaga aattaaaaca
      541 tcatatagag taaaaaaagt ttatagtata caagctaatg atatttctaa aattacaaaa
      601 tttggccaga aaagaagaaa acaaaaagaa gaaagtttag aaccaacttt atttgatttc
      661 acaaaagata ctaaggacta acaatgacta actaccaaga aaaagattta gaaaatttca
      721 tagagtctta cttgttagaa aaccatgcct atatcaaaag aacaaatgaa aattacgata
      781 aaaatttatg tttagatgta gagctttttg aaaatttttt acaagctacg caaagtgtag
      841 cacttgaaga gcttaaaaag cgttgcggac aaaactataa aaaagaactt tttgatcgta
      901 ttttctcgca gattaaaacc aaaggcatag ttaaagcctt gcaaggctat gtagagatca
      961 aaggcatcaa aatttaccta gcctttgcca agccaaatac caatgcaaac gaagaaagcg
     1021 tgaaaaaata cgagcaaaac agcctttcta tcatacgcca gcttcactat agcacgcaaa
     1081 ataaaaactc ccttgatata gtgatctttt taaatggctt gcctcttatc accatagagc
     1141 ttaaaaacca tttcacagga caaaatgtct ttcacgctat aaagcagtat aaaaaagaca
     1201 gaaacccaaa agaagctata tttaactata cgatagtgca ttttgcgcta gatcatgatc
     1261 tttgttacat gagtacgaaa ttagatcaag atgcgactac atttttacct tttaaccttg
     1321 gtttaaataa tggtagtggc aaaataggct tagcaaatgg agcaggtaat ccttcaagtg
     1381 atggtataaa aacagcttat ttgtgggaga aaatctttaa aaaagatact ttgctaaatt
     1441 tattttttaa ttttgtgcaa gttgtaaaaa agaaaaatga agaaatcatc atatttccta
     1501 gataccatca attcgatgta gtagaaaagc tactcgccca tgcaaaagaa aacggcacag
     1561 ggcaacgcta cttgatccag catagtgcag gaagtggcaa gagtaattct atatcttggc
     1621 ttgcacataa tctcgtaagc ttgcatagac ttgaaaaaaa tatctttgat tctatcatcg
     1681 tagtaaccga tagaaaagtg cttgatagtc aaataagaga aaatgtaaaa tccttttcgc
     1741 agacaaaaaa tttagtagaa gttatcactc atggaagcaa acagcttaaa aatgctttag
     1801 aagaaggtaa gaaaatcatc atcacaacca tacaaaaatt tccttttatt ttagatgaaa
     1861 tcaaaacttt aaaaagcaaa acttttgcta tcattatcga tgaagctcat tcaagtcaaa
     1921 gcggaagcaa tgctcaaaaa atggcagaag ccataaggga taaaagcggc gatgaaagtc
     1981 aaaatttaga tgatgaaatt ttagaaatca taaaaaataa aaaactccaa agtaatgctt
     2041 cttattttgc atttaccgct acgcctaagc caaaaacctt agaaatgttt ggtatgcctt
     2101 gtgatgttaa tggagaacaa aggtttatcc cttttcatct ttactcgatg aaacaagcca
     2161 tagaagaagg atttatactt gatgtactaa aaggttatac aacctataaa agttattata
     2221 aaatcatatc ttgtacaaat gataatccaa aatacgataa aaaaagagcc aacgcaaaac
     2281 taaaagctta tgtgcaaaac aatatcagaa caatcgagca aaaatcacaa atcatgtgcg
     2341 agcatttttt ccaaaacagc tttaaaaaga taaaaggtaa agcaaaagct atgatcgtaa
     2401 caagttcaag agagaatgct gtgaagtatt atcttgtttt tagggaatat ttaagaaaaa
     2461 attatccaca ttttaaagcc attgtagctt tttcaggtga agtaaattta gaaggtgaaa
     2521 tttatagcga aagtgcttta aatggttttg cggaaaatgt tttaaaagat gagtttaaaa
     2581 aagatgagta tcgtttttta atcgttgcgg aaaaatacca aaccggattt gatgagccat
     2641 tattacatac tatgtatgtg gataaagcat taagtggggt aagtgcagta caaactctat
     2701 caagactaaa ccgaacttgc aaaaacaaag aaaacacttt tgtgctagat tttgtaaata
     2761 ctcatgaaga tatagcaaaa tcttttagtg tgttttatga gcaaacttat ttaagtgaag
     2821 ccacagatga taatagaatt tttgatttaa aggcaaatct aaatgagtat gaaatttata
     2881 cccaagaaga aatagatgat tttgcaaatg ctattttaag aaaagaaaaa gaaaatatca
     2941 ttcatgcaaa attggacata atgctagata gatttaatca aaaaagtgat gatgaaaaat
     3001 tagattttta taataaagca aaaacttatc ttaaagagta ttcttttctt gcacaaatat
     3061 tgccttatga agacatagag cttgaaaaac tctatatatt acttaaaaaa cttgctagta
     3121 agatcatctt gcctaaatca gaggatttag ctaaaggaat tttagataat gtggattttg
     3181 atagttatcg cttgcaactt gataaaacac aagacatcgt tttacaagga aatggagagc
     3241 taaagccttc gtttgcagat ggttcgagca aaagtgttga agctgaatta gaagaacttt
     3301 caaacatcat caaagatttt aataacaaat acgcaaatat agactttaat gaaagcgata
     3361 aaattgctaa aatcttatat gatataaaag atgatatagc aaaaaatgaa agaatacgtg
     3421 aaacttttag caaatccgat atacaaaatt ctcgtatcga gtttgatgcg cttttaaaag
     3481 ataaaattca agatatcttg gagttaaatt tagaactttt taaacaattt aatcaaaata
     3541 tagaatttaa agacaagata gcaaatacca tgtttaatat ggtttgtaat gatttttaaa
     3601 gtataaaatt gtcaaaaaag gataaatgtt tgtgagtgta gattttttta aaacctttga
     3661 tatttcaaat aatgaaagat caaaagctaa aaaagtgcag ggtaaaaaat atgaaatttt
     3721 tcttaatgaa aatgagcaca gtcttataac tcctaaagtg tcttttaaag aaattttgag
     3781 gtattattat ctttatccaa aaaatgccat tccttctttt aaattacctt ttttcaagcc
     3841 tgatttgagt ggttttagca ctccgcatat tacttggctt ggacattctt cgctttttat
     3901 aagttttaaa gaatataaaa ttttgattga tcctattttt aacactcatg cttcgcctat
     3961 ttcttttacc aacaaggctt ttaaaaatgc tcctgtttat aatgtaaatg attttaatga
     4021 aatttttgct gtgattatca cgcattcaca ttttgatcat ttagatgcta agagtgtcaa
     4081 agctttaaaa gaaaaagcac gattttttat cacaccttta aaagtgggaa attatctaaa
     4141 aagctatggg gtgagtgaga aaaaaatcat agagcttgat tggtggagcg gcatagaatt
     4201 tggtgattta aaaatcattg caacacctgc acaacacagt tcaagcaggg gagatggtaa
     4261 aaacaaaacc ctttgggctt cttttgtgat ggaattttta agtgtagata agagagtgtt
     4321 ttttagcgca gatggagggt attttacaca ttttaaaaaa ataggtgagt attttggaga
     4381 ttttgactta gcttgtcttg aaagcggaca atttaatatc gcctggccat attcacactc
     4441 ttttcctgag caaattttaa aagaagcaaa agatcttaat gcaaaagctg tcatgcctat
     4501 acattggggg agatttttag caggaactca tgcatggaat gaggtggtaa aatttcttta
     4561 tgaaaattta gatttacccc ttatcacacc aaaaatgggc gaggcttatg aagtaggagc
     4621 taaatttaaa caggattttt ggtggaaaga agaataaatt aacacaagtt tataatttat
     4681 attttggctt ttgctatagt tttataaaac taaaaaagga gattttgtga aaatcattca
     4741 atggaatgga gcggaattta gcccaaaaga agtgaaaatc aatgttttaa ttgacaatga
     4801 aaaaggtaaa gaaattcaaa ttttattagc taaagatagc gtgatgaaag agcataaagc
     4861 tccttttgct atacatgttc aagttttaag cggtaaaatt tggtttgaag tggaaaagga
     4921 aaaatttgaa ttaaatgttt tagatatgat aagcctagag gcaaatgtag cgcattcttt
     4981 aggtggattg gaaaattcta taataagatt gagtttaaat aaatcagata gtgttcaaag
     5041 ggtaaatgct gtgcttaaaa agccttaaag taattttaag gctttagggc ttaataagaa
     5101 gcaatgaagt ttgctattct ttctaaacct tttttgataa gctcatcgct tgtggcataa
     5161 gaaagcctaa aatatccatc cattccaaaa cctatacctg gaacaacggc aactttttct
     5221 tgttcaagca atttttggca aaatttcata gaatcttttt ctattttttg tatatttaca
     5281 aaaagataaa aagcaccttc tggtttataa acactgatat ttgggatttg tttaagtatg
     5341 tctaaggcta agttacggcg tttttcaaag gcttgacgca ttttttctat atctttatca
     5401 cattctccat ttaaagcagg aatggctgca tgttgagtga tggagcaaat atttgaagta
     5461 ctttgtcctt gaagtctttt aacggctgaa attagggctt tatttttgct tgccatatag
     5521 ccaaaacgcc atcctggcat agctccacat ttgctaagtc cgttaatggt cacagtgcgt
     5581 tttaaagcat ctttgcttac acttgcaaaa gctacaaaat caaaaccatc atagcgaagt
     5641 ttttcataca tttcatcact taaaacagtg atttgcgttc cttctaaaac tttagcaatt
     5701 tgagttaatt cttctttaga ataaatcgat cccacaggat ttgaaggaga atttaacatt
     5761 aaaaccttgg ttttggctgt gatagctttt tttaattgtt cagcggtaat tttaaagcca
     5821 ttttcttcta agccttctat aaatacaggt tttccacctg caaattttac catttcagga
     5881 tagcttaccc agtaaggact agggataatc acttcatcat ctttttctac taagcattct
     5941 atacattcaa aaagagagtg ttttgcgcct acattggtga tgatttcatt tgtttcataa
     6001 tcaagattat tatctttttt aaatttggtt tgaatagctt ttaatacttc aggaattcct
     6061 gcaacagcag tgtattttcc acatcctttt tcaatagcac ttatagcggc atttttgatg
     6121 gtttgtggtg tgtcaaaatc aggttcaccc gctgaaaaac taatgatatc ctcgcctttg
     6181 gctttaagtt cattggcaag tgcagtgata gctaaagtga tagattcttc taaaacttga
     6241 gatctttttg taagcatttt tcaatcctta atagtttttg tttaatttta gcagaaaatt
     6301 gcatttttac aataaattta atttaaaaat gagttgtaaa tttcaataaa tgtgaaaatt
     6361 tgtattaatt tttaggaaaa att
//
LOCUS       DARGEM010000087         6380 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.087, whole genome shotgun sequence.
ACCESSION   DARGEM010000087 DARGEM010000000
VERSION     DARGEM010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.087"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..113
                     /locus_tag="SFZ78_001322"
     CDS             <1..113
                     /locus_tag="SFZ78_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212185.1"
                     /translation="LFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            110..1114
                     /locus_tag="SFZ78_001323"
     CDS             110..1114
                     /locus_tag="SFZ78_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8212186.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1114..2730
                     /locus_tag="SFZ78_001324"
     CDS             1114..2730
                     /locus_tag="SFZ78_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8212187.1"
                     /translation="MYKTLQYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2714..3622
                     /locus_tag="SFZ78_001325"
     CDS             2714..3622
                     /locus_tag="SFZ78_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8212188.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3658..4863
                     /locus_tag="SFZ78_001326"
     CDS             3658..4863
                     /locus_tag="SFZ78_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG8212189.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4876..5566)
                     /locus_tag="SFZ78_001327"
                     /pseudo
     CDS             complement(4876..5566)
                     /locus_tag="SFZ78_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(5635..6297)
                     /gene="sodB"
                     /locus_tag="SFZ78_001328"
     CDS             complement(5635..6297)
                     /gene="sodB"
                     /locus_tag="SFZ78_001328"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG8212190.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         2160 a          855 c         1049 g         2316 t
ORIGIN      
        1 ttttattttt actatgcgtt ggctttgctt ttgcttgctc tgaacattct cataccgatt
       61 ttaaagatct taataaaacc gagtataatt ctcaattaaa ggataaaata tgaaaaaaat
      121 cttctttatg tttttaacgg ctgtttcatt tttaggtgct agtgagctta atatttactc
      181 agcaagacat tataatgctg attttgaaat cataaaaaaa ttcgaagaaa aaacaggtat
      241 taaggtcaat catactcaag ctaaagcttc agaacttatt aaaagacttt ctcttgaagg
      301 aagtaattct cctgctgata ttttcatcac agctgatatt tcaaatctta cagaagctaa
      361 aaatttagga cttttatccc ctgtttcatc aaaatattta gaagaattta tacctgctca
      421 tttaagagat aaggataaag aatggtttgc gattacaaaa agagcaagaa ttattgctta
      481 caacaaaaac gcaaatatcg atattagcaa aatgaaaaat tatgaagatt tagcaaaagc
      541 tgaatttaaa ggagaaattg ttatgagaag tgctacagct ccttatagta aaactctttt
      601 agcatctatt atagctaatg acggaaataa agaggctaaa gcatgggcta aaggtgtgct
      661 tgaaaatctt gcgacaaatc caaagggtgg agatagagat caagctagac aagtatttgc
      721 aggcgaagct aaatttgcag ttatgaatac ttattatata gggcttttaa agaattctaa
      781 aaatccaaaa gatgtagaag tggggaattc tttgggtatt atttttccta atcaagacaa
      841 tagaggaacg catattaaca ttagcggtat tgctatgaca aaatcaagta aaaatcaaga
      901 tgcggctaaa aaatttatgg aatttatgtt aagtcctgaa attcaaaaaa ttcttactga
      961 tagtaattat gaatttccta taagaaatga tgtagaatta agccaaactg taaaagattt
     1021 tggaactttc aaagaagatc aaatccctgt gagtaagata gcagaaaata ttaaagaagc
     1081 tgttaaaatt tacgatgaag tcggttttag ataatgtata aaaccctaca atactataaa
     1141 ctcggggcaa ttttacttgc cctttttctt gctttgccta tttttggtat ttttgctgaa
     1201 cttttttata ttttatttca aaattttaat acaagtaatt taacccaatt ttcatctatt
     1261 aaagaaaatt tgagtcattt ttttgattat ttatttttaa aattcatcaa agatactttt
     1321 ataattagcg tgggagtatt gtgtttaagc ttgattttgg gtgtaagttc tgcttatttg
     1381 atcgcaaatt atgattttta tttctgtaaa attttagaaa aattactcat tttacccttg
     1441 gccatacctg cttatatttt agcctttgtt tatgttggaa ttatggattt tcaaggattt
     1501 tttcatgaaa attttggctt taggatggat tttttcaatc attatggtgt tatttttgtt
     1561 ttggctattt ctttatatcc ttatatttat ttatttgcta aaacagcttt taaaagtgaa
     1621 gccaaagagg cttatgaagt agctaaaatc atgaaatatt ctgaatttag aatttttaca
     1681 cgcgtggcac ttttgagcgc aaggcctgcc attttttctg gagctttatt ggttttaatg
     1741 gaaactttaa gtgattatgg cgcaagtgct tatttgggag tggatacttt ttcggctgga
     1801 atttttaaac tctggtatga tttgaatgat tcttattctt ctagtgtttt atcgggtatt
     1861 ttaatgcttt ttgtattttt gattatgtat gtggattatt attataaaaa taaacatcat
     1921 tatagtttta atcaaaattt agctcttttt atcaaaaaaa gaaaattaaa tcctattaaa
     1981 caaattctat cctgtattta ttgttttatg attgcttttg taggttttat tttacctttt
     2041 atttggctag tttattgggg gctaaaagat cataagcttt ttgaatcgca attttatatt
     2101 atcagttttc aaactataat cttagcttta atcactgctt taattaccac ttttttagct
     2161 tattttttga tgtttagctc taggatagtt aaaaatcatt tttttaattt atttatttta
     2221 aaaataagtt ctttgggtta ttctatacct gctgctgctt tagggattag cattatagtg
     2281 ctttttgtat ttttggataa attttttcac atgagtttat tgggaaattc tttacttgtt
     2341 cttgtttttg cttatataat tcgtttttta gcgagtgcaa tttattcttt agaaggagga
     2401 tatagtaaaa ttcatctaaa tattgatgag gcaagtttaa atttaagagc gagttatttt
     2461 attttatttt ttaaaattca cacaccttta atgaaacatt ttttattttt ggcttttatt
     2521 attgttttta ttgatacgat taaagaactt cctttaagta gaattttagc gccttttggc
     2581 tttgaaactt taagtgttaa agctttctgg tttgcaagtg atgaaagaat ttatgatgca
     2641 gctttgcctt ccttgtttat cgtttttctt tctttaatgg ttgttgtttg gatggataaa
     2701 atcacaagga aagatgatgt tagaaattaa aaatttatct aaaaattttg aaaaaataca
     2761 agctttagaa aatatcaatc ttcatgtcaa agaaggagaa tttttaagca ttttaggagg
     2821 tagtggaagt ggaaaaagca cgcttttaag gattattgct aagcttgaac aagctagttc
     2881 ttatgatttg ttttcttgca aaggtgaagt ggctttgatg tttcaaaatt atgctttatt
     2941 tcctcattta aatgttgaga aaaacatact ttttgcactt tacgataaaa aagataaaaa
     3001 tcaaatttta aatcatttgc ttaaaacttt tgaaattgaa gatttaagat ataaaaaaat
     3061 cgatgaaatt tcaggagggc aagcgcaaag agtggctttt gctagagcta tagcaagagg
     3121 atgtcagctt ttgcttttag atgaaccttt ttctaatttg gatcaaaatt taaaacagga
     3181 tttaagaaga gaattgaaaa aaatgataga aaatcaaggc attacggcta ttatggtaac
     3241 tcatgatatt gaagatgctt attgtatgtc tgatcaaatc gcttttttag aaaaaggaaa
     3301 aattttagct catgcaaatc ctaaagagct ttattttaag cccgatttta aaagtgcgca
     3361 aattttacct gatttaaata tcatagaaga aaaacttgat ttagaagatg aattttttgc
     3421 ttggatagct tcaaaaaatt atatttttgg ttatgcagaa cttaaaatag gaaatcgctt
     3481 tgaggctaaa attttacaaa aagaattttt aggggctttt tatagactta agttaagata
     3541 taaaaatata gaatttttta tgttattaag ctcaaattat aacttagaag aaaaaataaa
     3601 ttttgatatt atcaattttt agttaaaatt cctaaaaatc ttttaaggac aaatttcatg
     3661 aaaaatcttt taatcatagg cgcaggtgga gtaagtcgtg tggctactgt aaaatgcgca
     3721 atgaattctg atacttttag caaaatcact ttagctagta gaacaaaaag caaatgtgat
     3781 gaaatcgcta cttttatcaa agagcgttta ggggttcaaa ttgaaacagc gcaaattgat
     3841 gctgatgata gcaatgcggt tgtagaactt atcaagaaaa caggagcgca aattttactc
     3901 aatgttgctt tgccttatca agatttgagt ttaatggatg cttgtataaa agcagggatt
     3961 gattatatag atacggcaaa ttatgaacat cctgatttag ctaaatttga atacaaagag
     4021 caatgggcga gaaatgataa gtttaaacaa gcaggaattt taggactttt aggaagtgga
     4081 tttgatcctg gtgtaactaa tgttttttgt gcttatgcac agcaaaattt atttgatgaa
     4141 atttcttata tagatatttt agattgcaat gcaggtgatc atggctatgc ttttgcgacg
     4201 aattttaacc ctgaaatcaa tctgcgtgag gtttctgcta aagggcgtta ttgggaaaat
     4261 ggcaagtgga tagaaacgca gcctatggaa ataaaaatgg agtgggatta tccagaagta
     4321 ggagtgaaag atagctattt gctttatcat gaagaacttg aaagcttggt aaaaaatatc
     4381 aaaggtttaa aaagaatacg cttttttatg acttttggac aaagttattt aactcacatg
     4441 aaatgtcttg aaaatgttgg aatgctaggg attaaacctg tgatacacca aggtaaagaa
     4501 atcattccta tagaattttt aaaaaccttg cttcctgatc ctgcaagttt aggaccacgc
     4561 actaaaggtt ataccaatat aggttgtgtg attcgtggta aaaaagatgg aaaagacaaa
     4621 caagtttata tttataatgt ttgcaatcat gaagaatgtt acaaagaaac tggcgcgcaa
     4681 gctgtgagct atactacagg tgttcctgct atgataggta cgaaattaat cgctaaagga
     4741 atttggcaag gaaaaggcgt gtttaatatg gaagaatttg acgctaagcc ttttatggaa
     4801 gagctgaatt ctcaaggact tccttggaag attatcgaaa tgactccaag cttaggagag
     4861 taagtgctag agcacttact tttgtcctat ataaataaag tgctccacac tgccttcaaa
     4921 attatacaga ttaattaatt cataatctcc ccaaaataaa ggtttaaaag gtttaaaatc
     4981 ttcttttaat tcttctatgt ctttagtaaa gcgtatatat gaagaaccac tcaatctacc
     5041 acttggacat ccttttactt cacgcaagct attatccata agttctcctc tttcatacat
     5101 actatagcct ttatcgctca tcatggttgc aaatataata gctccttcat tgcatagttc
     5161 ataaaattct tgcacagctt ctttaaaagc ttgttttgta agataatata agctttgatt
     5221 tgcaaatata aaatccattt ttgtattgaa gagtttttta aagctagaat taggagatat
     5281 gatgtgaaaa tttttagaat ctaagcaagg atctttttcc caaacttttt ttaaactagg
     5341 aactatatca atgccataag gctctatacc cccccccggt tatattttta aaatacttag
     5401 aatgcactcc atttccacaa ccaaaatcaa gtaattttcc acttgttttg cttagtttgt
     5461 attttaagat tctctcgtaa aatcttataa catgaccatc aggatattga agtccataac
     5521 cttctttgtc atatttttga gtatatgcag ataaagaatt atccattttt gccccttttt
     5581 gtgtagaatg ttgacttaat gtcaaaatcc attctagcac aaaaaggatt aaagttattt
     5641 tacagggtga agttcatttg cataaaagct aactgatccc atgccttctt ttaaagccca
     5701 ttcgtaagct tttgcaacaa attcccagtt aatatgagca tagaattttt ctaaataagc
     5761 agggcgtgca ttacgatgat ctacataata agcatgttcc caaacatcta caacaagtaa
     5821 aggaacttta tcttcagtaa ttggtgtagc tgcgtttgaa gtacctacaa attctagttt
     5881 ttgattttta gtattataaa ctaaccaaaa ccatcctgaa ccaaaaactc ctgtagcgcc
     5941 tttgataaat tcagctttga aattttctaa agatccaaat tctttttcta gtgccgcttg
     6001 taaattagca tctatacttt gacatgaacc gccacagcca cagcctgtac ttggcttaat
     6061 gcaatcaaaa taaaaatcat gattataaac ttgagctgcg ttattaaata cgcccccatt
     6121 tgaagttttg ataatactta caagatcttt acctgcaaat tcagtatctt taataagatt
     6181 atttagattt gtaacataag tattgtgatg ttttccatga tgatagctaa aagtttcagc
     6241 actcaaaaaa tcaccaaaag cattggtatc ataaggtaat tttcttaatt caaacataat
     6301 ttctccttta tttttagttt gatattgaaa atattaccat aataatatta aaaagagtaa
     6361 aaatatctta aaagcttagt
//
LOCUS       DARGEM010000088         6282 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.088, whole genome shotgun sequence.
ACCESSION   DARGEM010000088 DARGEM010000000
VERSION     DARGEM010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6282
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.088"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1158
                     /locus_tag="SFZ78_001329"
     CDS             <1..1158
                     /locus_tag="SFZ78_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8212191.1"
                     /translation="SNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESVEAMPI
                     FAFSNVNKAKEFVNDLIKENNLQDFRLLDTLECINLQNVNNVIIVSFFEESEESENTL
                     THIVNAIGAFKKAKHKTGFSPDIIIAPYYSHEAGVKAKLESVASSMNITAIVDLYATN
                     VGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAHTDGDKEYGFSD
                     SYSNRVMNGVTGTEHFIEFINGFDCDADRLRNAHISTCILSEGYRSWGGETSHEDTIW
                     QDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKGTKVLIGYEVSW
                     DEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKTISAE"
     gene            1305..1820
                     /locus_tag="SFZ78_001330"
     CDS             1305..1820
                     /locus_tag="SFZ78_001330"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HEG8212192.1"
                     /translation="MFNKVPQVIEQANCFIDGYGYAGVARDITLPIIEQEVLESKGAL
                     SANYGTGVFKAMECSFKISEMGEQAFEAFGVNTFSKTKIPLVFKASIHQSGSGKQVPF
                     VVELNGEFTSMTPPSIVAGGEFTSEIKINVHFIKITMDGKRLFLADIKNLILEFNGID
                     KMAKVKANLSL"
     gene            1831..2067
                     /locus_tag="SFZ78_001331"
     CDS             1831..2067
                     /locus_tag="SFZ78_001331"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HEG8212193.1"
                     /translation="MSKIIKLSNGNEVKFNPPTAGMLRRSMDMQKGEGSRAFYMIGEC
                     TNMSLEELDNLSLEDITLLSNELNNYQTPSGSTE"
     gene            2051..2188
                     /locus_tag="SFZ78_001332"
     CDS             2051..2188
                     /locus_tag="SFZ78_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212194.1"
                     /translation="MGALNNEAIALIAHYLHFSYSEIMSLNIKDYLEFLDISLKIAKS
                     V"
     gene            complement(2175..2405)
                     /locus_tag="SFZ78_001333"
     CDS             complement(2175..2405)
                     /locus_tag="SFZ78_001333"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212195.1"
                     /translation="MKKIDNAFNAKIIFLKNFKIVFKAFLTLGIFVAFMLSFLSDDYL
                     AGFVNITSFFVLFSLILYIATFIYCFFKLKHS"
     gene            2435..4399
                     /locus_tag="SFZ78_001334"
     CDS             2435..4399
                     /locus_tag="SFZ78_001334"
                     /inference="COORDINATES: protein motif:HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEG8212196.1"
                     /translation="MQDLGLSFGISLAFKGFKEFAKNTEALKKFSANLDQSNKSVKAL
                     NKSIDALEKSKAKIKAIGEEFSALKGELMAKGASALAIGVPVKISANLEDDMNNINAF
                     LNTNNESLNLLRKNFLKLSSNIGMNVNELTKLGEAGARLGIKSESELLKFSELGAKYS
                     KVFKLNNEESINFMSKLSNIYKLNTKDMQNLGDKIIGVAKASNVSASSVAKIMNEVGG
                     DAKLIGMSAEGAAALSAAFASATKDEGEAIGTFKAMTSVMSNLNNASDDMKTKFLSLG
                     LSTEQLSAYFKQDASGAVKVLLNQIKTLPKDEMTDFLNSVFGTGAAGMMQNLVDNTDK
                     YEQALKSLKNTKMGALNNEFKKLGDSTNTSFAKLSASMANLSASIGEALAPALSFVMD
                     SISSLINFIREIIDAFPNLSKVIGTLVVSLTIASVALSALKVGFLVAKIAGAQFAFTL
                     NAIRTAFNILKIAFLTNPIGLVLMSIAAIATLVIMNWDKVKTFFIGFIDKISSVFSGF
                     GEFFSSLWGGLFNWFASKFEWLSKAFAKIKDIAKSVASFFGFSDNDKKVDGEKYQNLQ
                     NDNSRTHHGIVRSGAPKHEARQAEIAALSKRSDISKKNEINVNINGTFNISSNNGVFD
                     LKAFAKEVENSVLSALNKNADKKVQTTIWG"
     gene            4401..4775
                     /locus_tag="SFZ78_001335"
     CDS             4401..4775
                     /locus_tag="SFZ78_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8212197.1"
                     /translation="MIFCLGEFEFEALNVDELEKNYEYGIRSIERINNHNALISVAKA
                     NESIKISGKTLPLSKDKNTYLDTLKQMASQNKSYAMCSASGVYFGKFAILSISEKQSA
                     FLEGSGFLTQSFELNLQRDFDE"
     gene            4768..4959
                     /locus_tag="SFZ78_001336"
     CDS             4768..4959
                     /locus_tag="SFZ78_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HEG8212198.1"
                     /translation="MSEIYIAKNNERLDSVVYRHYGTLLYFDQVLLANPKLEPLLKTG
                     DKVILPNIEIQENKEETLW"
     gene            4953..5921
                     /locus_tag="SFZ78_001337"
     CDS             4953..5921
                     /locus_tag="SFZ78_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8212199.1"
                     /translation="MVNHPSFKIKANDKDITQKISLNLINLSFDDKAKDESDEISISL
                     NGLYARAPFGDKLELWLGFDEKLFKCGTFSINSFSKNYSSKTTDIKATAINFASNIKN
                     KKSRTWENTNLADIALKIAGENNLKAKTNNANKAYIKHELQNNVSDIEFIYTLCAKYG
                     FLACIKEQTLIIIEQKEAAQEGVKGGGKQEGGIKYTLDISELSDLNISIKNRNDYTGV
                     KLTYQDIEQGIVKSVLSGNDKGCVYELKVAGVKNDSEALNLANAKLNALNKGSFEGSF
                     SMIGKNIKAGANLEIKGIDEKVIFSIKDVKHDFSLSGYTISVNFEG"
     gene            6107..>6282
                     /locus_tag="SFZ78_001338"
     CDS             6107..>6282
                     /locus_tag="SFZ78_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8212200.1"
                     /translation="MGGKNYLAKEIIALMPEHKSYIEVFGGALSVFYQKSASKIEVIN
                     DINDELINLHLCIR"
BASE COUNT         2349 a          781 c         1224 g         1928 t
ORIGIN      
        1 agcaatggtg cggcaagtcc tattaaagtg caaagtgata cgcctattgg tattgctggg
       61 gctataaaag gtgcaagtaa agaaatgatt tacacaaagg ctggttatga aagcgtggaa
      121 gctatgccaa tctttgcctt ttcaaatgta aataaagcaa aagaatttgt aaacgattta
      181 atcaaagaaa ataacttaca agattttaga cttttagata ctttagaatg tatcaattta
      241 caaaatgtaa acaatgttat aatcgtcagc ttttttgaag aaagcgagga aagtgaaaac
      301 actttaaccc atattgttaa tgccatagga gcctttaaaa aagccaaaca taaaacaggc
      361 tttagtcctg atattatcat tgctccttat tactcacatg aagcaggagt aaaggctaag
      421 cttgaaagtg tggcaagttc tatgaatatc acagctattg tggatcttta cgctacaaat
      481 gttggcgaag ctattaatac aatggaggct tttagctcca aaagattaat tgccacttgg
      541 ccacaggtac aaatcttaaa tacacaagga aaatacgctt atgttccaca atctcctatc
      601 atcgcaggtt taatagccca tacagatggg gataaagaat atggctttag tgattcttac
      661 tcaaatagag tgatgaatgg ggttactggc acagagcatt ttatagagtt tatcaatggt
      721 tttgattgtg atgcagatag attaagaaat gctcatatct caacttgtat tttaagtgaa
      781 ggttatcgct cttggggtgg ggaaactagc catgaagata cgatttggca agatttagct
      841 cgtgtaagaa cctttgatcg catagctcta gcaggacaaa aagcagcttt taaggctatt
      901 gataaaaaag caagtgaatt atattttata aaaatcagca ttgaagaatt gctaagagat
      961 ttaaaaggaa ctaaggtttt aattggctat gaggtaagct gggatgaaga aagaaacaca
     1021 gatgccaatg tgagtgctgg taagttttat ctaaatataa aaatgatgaa taatccaatc
     1081 gttaaacaaa tcactttaga gttcatctac tctgatgagt gggcgagtga tttgattaaa
     1141 actattagtg cagagtaaaa ggtggctttt ggggctttct cacagagagt gcaaagcaca
     1201 agcttaaaga gagtgtaaag cacaagagag gggtcaaggg gatgaaatcc cttgttgcaa
     1261 ggtggaattt acttccaccg cgaagttaaa agaaggagaa taacatgttt aataaagtac
     1321 ctcaagtaat tgaacaagca aattgtttta tagatgggta tggttatgct ggggtagcaa
     1381 gagatattac tttgcctatt atagaacaag aagtattaga aagcaaagga gcgctgagtg
     1441 caaattatgg cacgggtgta tttaaagcaa tggaatgctc ttttaaaatt agtgagatgg
     1501 gagaacaagc ttttgaagct tttggagtaa atactttttc taaaacaaaa atcccacttg
     1561 tttttaaagc aagtattcat caaagcggat caggaaaaca agtgcctttt gtagtggagt
     1621 taaatggaga atttacatct atgactcccc cttctattgt agcaggtggc gaatttacaa
     1681 gtgaaataaa aatcaatgtg cattttataa aaatcacaat ggatggcaaa agactatttt
     1741 tagctgatat aaaaaatctt attctagaat ttaatggcat tgataaaatg gcaaaagtaa
     1801 aagcaaattt aagtctataa ggagaaaatt atgtcaaaaa taatcaaatt atcaaatgga
     1861 aatgaagtta aatttaatcc cccaacagct gggatgttgc gtcgttctat ggatatgcaa
     1921 aaaggcgaag gttcgagagc tttttatatg ataggagaat gtactaatat gagtttagaa
     1981 gagcttgata atttaagtct tgaagacatt actcttttaa gcaatgaatt aaacaattac
     2041 caaactccca gtgggagcac tgaataatga agctattgcg ttaatagctc attatttgca
     2101 tttttcttat agtgaaatta tgagtttaaa cataaaagat tatcttgaat ttttagatat
     2161 cagtttaaaa atcgctaaga gtgtttaagc ttaaaaaaac aatagataaa ggttgcaata
     2221 taaagtatta aagaaaaaag cacaaaaaat gaagtgatat taacaaaacc tgctaaataa
     2281 tcatcgctta aaaaagaaag cataaaagcg acaaaaatac cgagtgttaa aaaggcttta
     2341 aaaacgattt taaagttttt taaaaagatg attttagcat taaaagcatt gtctattttt
     2401 ttcataaata gattttacaa taaaaaggaa aaatatgcaa gatttaggac ttagctttgg
     2461 tatatcttta gcctttaaag gctttaaaga atttgctaaa aacactgaag ctttaaaaaa
     2521 gtttagtgct aatttggatc aaagcaataa aagtgtaaaa gccttaaata aaagtattga
     2581 tgcattagaa aaatccaagg caaagattaa agcaataggt gaagagttta gtgctttaaa
     2641 aggtgagctt atggctaaag gtgcaagtgc tttagctatc ggtgtgcctg taaaaatcag
     2701 tgctaatctt gaagatgata tgaataatat aaacgccttt ttaaatacaa ataatgaaag
     2761 tttaaatctt ttacgaaaaa actttttaaa actaagttct aatataggaa tgaatgttaa
     2821 tgagcttact aaattgggtg aagcaggagc aaggcttggg ataaaaagcg aaagtgagct
     2881 tttaaaattt agcgaacttg gtgctaagta tagcaaagtc tttaaattaa ataatgaaga
     2941 aagtattaat ttcatgagta agctttctaa tatttataaa ttaaatacca aagatatgca
     3001 aaatcttgga gataagataa ttggtgtagc taaagcaagc aatgtaagtg cttcaagtgt
     3061 tgctaagata atgaatgaag taggaggcga tgcaaagctt atcggtatga gtgcagaggg
     3121 tgcggcagct ttaagtgctg cttttgcaag tgcgactaaa gatgaaggcg aagcgattgg
     3181 aacttttaaa gcaatgacta gcgttatgag taatttaaat aatgcaagtg atgatatgaa
     3241 aaccaagttt ttaagcttgg ggcttagtac agaacaacta agtgcttatt ttaaacaaga
     3301 tgcaagtggt gcggttaaag tacttttaaa tcagataaaa accttaccaa aagatgagat
     3361 gactgatttt ttaaattcag tttttgggac gggtgctgca ggcatgatgc aaaatttagt
     3421 cgacaataca gataagtatg aacaagcttt aaaatcttta aaaaatacaa aaatgggtgc
     3481 tttaaataat gaatttaaaa agttaggaga ctccactaac acaagctttg caaaacttag
     3541 tgccagtatg gcaaatctta gtgcaagcat aggcgaagct ttagcacctg ctttaagctt
     3601 tgtcatggat agtatctcat ctttgattaa ctttattaga gagattattg atgcttttcc
     3661 aaatttaagt aaagttatag gtaccttagt agtttcttta actatagcta gtgttgccct
     3721 tagtgcttta aaggtaggat ttttggttgc aaaaattgca ggagcgcaat ttgcttttac
     3781 gcttaatgct ataagaactg cttttaatat attaaaaatc gcttttttaa ccaaccctat
     3841 agggcttgtt ttaatgtcaa ttgccgccat tgcaacgctt gttatcatga actgggataa
     3901 agttaaaacc tttttcattg gatttataga taaaattagt tccgttttta gcggatttgg
     3961 cgagtttttt agctctttat ggggtggttt atttaattgg tttgcttcta agtttgaatg
     4021 gttaagcaaa gcatttgcaa agattaaaga tatagctaaa agcgtggcct ctttttttgg
     4081 ttttagcgat aatgataaaa aagttgatgg agaaaaatat caaaatttac aaaatgataa
     4141 ttctagaacc catcatggta tagtaagatc aggtgctcca aagcatgaag caagacaagc
     4201 tgaaattgcc gctttatcca aaagaagtga tatttctaaa aaaaatgaaa tcaatgtaaa
     4261 tattaatgga acttttaata taagttcaaa taatggagtg tttgatttaa aagctttcgc
     4321 aaaagaagtt gaaaatagtg ttttaagtgc attaaataaa aatgcagata agaaagtgca
     4381 gacaacaatt tggggttaaa atgatatttt gtttaggtga gtttgagttt gaagctttaa
     4441 atgtagatga gcttgaaaaa aattatgaat acggcattag aagcattgaa cgtattaata
     4501 atcataatgc tttaatcagc gttgctaaag caaatgaaag tattaaaata agtggtaaaa
     4561 ctttaccgct tagtaaagat aaaaacactt atttagatac tttaaagcaa atggcttctc
     4621 aaaataaaag ctatgcaatg tgtagtgcca gtggagttta ttttggaaaa tttgcgattt
     4681 taagtatcag cgaaaaacaa agtgcttttt tagaaggcag tggcttttta acacaaagtt
     4741 ttgaacttaa tttacaaagg gattttgatg agtgagattt acattgcaaa aaacaatgaa
     4801 aggcttgata gtgtggttta taggcattat ggaacgcttt tgtattttga tcaagtttta
     4861 ttagccaatc caaaattaga gcctctttta aaaacaggag ataaagtgat tttacctaat
     4921 attgaaattc aagaaaacaa ggaagaaact ttatggtaaa tcatcctagc tttaagataa
     4981 aagcaaatga taaagatatt acacaaaaga taagtcttaa tcttattaat ctaagctttg
     5041 atgataaggc caaggatgaa agtgatgaga taagcatcag tttaaatgga ctttatgcaa
     5101 gagctccttt tggcgataag ttagaacttt ggcttggatt tgatgaaaaa ctttttaaat
     5161 gtggtacttt tagcattaat agttttagta aaaattatag ctctaaaaca acagatatta
     5221 aagctactgc gattaatttt gctagcaata ttaaaaacaa aaaatcaagg acttgggaaa
     5281 atactaatct tgcagatatt gctttaaaaa ttgctgggga aaataattta aaagcaaaaa
     5341 caaataatgc aaacaaagct tatatcaaac atgaacttca aaacaatgta agcgatattg
     5401 agtttattta tactctttgt gcaaaatatg gctttttagc ttgcataaaa gaacaaactc
     5461 ttatcatcat agagcaaaaa gaggcagcac aagagggtgt aaagggtggc ggcaagcaag
     5521 agggtggcat caaatatact ttagatataa gtgagcttag tgatttaaat atcagtatta
     5581 aaaatcgcaa tgattataca ggcgttaaac taacttacca agatatagaa caaggcattg
     5641 ttaaaagcgt tttaagtggc aatgataagg gttgtgttta tgagctaaag gttgctggag
     5701 taaagaatga tagtgaggca ctaaacttgg caaatgctaa gcttaatgct ttaaataaag
     5761 gctcttttga aggaagcttt agcatgatag ggaaaaatat caaagcaggg gcaaatttag
     5821 aaataaaagg cattgatgaa aaggttattt ttagtattaa agatgtaaaa catgactttt
     5881 ctttgagtgg ctatactata agcgtgaatt ttgaagggta ataaggaaga ctaaagcctt
     5941 cctttttcta aaaactagca aaagcattat agctttattt ttaaagacta gctttttaaa
     6001 ttttattttg aaaggagttt gtatgaaaaa taatacagac aaatttctaa aaactagcac
     6061 acttactaaa cctacaagaa ctacactaaa agctccgttt gcttgagtgg gtggtaaaaa
     6121 ctatttagct aaagaaatca tcgctttaat gcctgagcat aaaagctata ttgaagtctt
     6181 tggtggagct ttaagtgttt tttatcaaaa aagtgcttca aaaatagaag tcattaacga
     6241 cattaacgac gagcttatta atttacatct ttgtataaga aa
//
LOCUS       DARGEM010000089         6262 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.089, whole genome shotgun sequence.
ACCESSION   DARGEM010000089 DARGEM010000000
VERSION     DARGEM010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6262
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.089"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..531
                     /locus_tag="SFZ78_001339"
     CDS             <1..531
                     /locus_tag="SFZ78_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212201.1"
                     /translation="FFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDIYIISLSGVEK
                     FDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPSVPNLEVKQVE
                     QLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFKENNASKPYHL
                     PQTGYDIKLDESSTQN"
     gene            complement(528..1037)
                     /gene="lolA"
                     /locus_tag="SFZ78_001340"
     CDS             complement(528..1037)
                     /gene="lolA"
                     /locus_tag="SFZ78_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG8212202.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            1137..3725
                     /gene="secA"
                     /locus_tag="SFZ78_001341"
     CDS             1137..3725
                     /gene="secA"
                     /locus_tag="SFZ78_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG8212203.1"
                     /translation="MFLNTLKAVFGTKNDREIKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3722..4927
                     /locus_tag="SFZ78_001342"
     CDS             3722..4927
                     /locus_tag="SFZ78_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8212204.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRVLFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4950..5735
                     /locus_tag="SFZ78_001343"
     CDS             4950..5735
                     /locus_tag="SFZ78_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8212205.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5797..5872
                     /locus_tag="SFZ78_001344"
     tRNA            5797..5872
                     /locus_tag="SFZ78_001344"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5830..5832,aa:Lys,seq:ttt)
     gene            5880..5955
                     /locus_tag="SFZ78_001345"
     tRNA            5880..5955
                     /locus_tag="SFZ78_001345"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5913..5915,aa:Val,seq:tac)
     gene            6007..6083
                     /locus_tag="SFZ78_001346"
     tRNA            6007..6083
                     /locus_tag="SFZ78_001346"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6041..6043,aa:Asp,seq:gtc)
     gene            6088..6163
                     /locus_tag="SFZ78_001347"
     tRNA            6088..6163
                     /locus_tag="SFZ78_001347"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6121..6123,aa:Lys,seq:ttt)
     gene            6183..6258
                     /locus_tag="SFZ78_001348"
     tRNA            6183..6258
                     /locus_tag="SFZ78_001348"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6216..6218,aa:Arg,seq:tct)
BASE COUNT         2138 a          802 c         1185 g         2137 t
ORIGIN      
        1 tttttttatg aagatatttt tacagaaatt ggaaaaaata attttaaaaa aactttagaa
       61 aaatttttag ataagaaata taagattaaa ctagatgata tatatatcat atctttaagt
      121 ggagtggaaa aatttgattt agaggagttt aaacgctttt tagaaagtac tgaggctaaa
      181 gagaagggta tgggtagcga ggtaaaaaaa gcacttgaaa acttagaagt tcctaaaact
      241 caagttccta gtgttgaaaa gatcccaact cctagtgttc caaatttaga agtcaagcaa
      301 gttgaacagc ttttcaaaga tccagatgaa gaaaataaaa atgacaatgg agaaatcaat
      361 atagataatt taaatacacc taaaatgact ccagatatag aagaaaaaat taaaagagat
      421 ttaatcgcca atcctccaca aatattcaaa gaaaataacg caagcaagcc ttatcatttg
      481 ccacaaacag gctatgatat aaagcttgat gagagttcaa cgcaaaatta gcgaactata
      541 tcataatttt gcggaatttt tgccttgaaa atatcggagt tgatttttgg atttttaatt
      601 tgattgttta gattgattat aacatcattt tcaaattcat ctttatagga tatgctttga
      661 atttgctctt gattgagttt aattgtataa tttatattat catattttgc tacaagttta
      721 tctttgtcta taagacttgc ttttttgaaa atttcattaa gatttggaat gttatcaaga
      781 tgagagaaaa tgacttgttc tagatcgtgc tctactatgg ttacttgatt tttgttgata
      841 taaatctctt ttttactagg agtatcataa ctccaatatg cttgatcttt actcagtata
      901 aaatgcccag aataagaaag tgtagagttt ttggatttca ctatttgggt aaaattgctt
      961 gaaaaggtat taaaattaag atcaagggca aaaagttgtc ctataaaaat aaaaaatatc
     1021 aagaatgttt ttttcattta ttttccttaa aaaaatatat tttttatgtc attctagcta
     1081 attttaatta aataatcgtt ataatgatag tttgaaaaat ttataaaggt ttaaaaatgt
     1141 ttttaaatac tttaaaagcc gtgtttggca caaaaaatga tcgtgaaatt aagaaatatt
     1201 tcaagcgtgt agcacaaatc aatgctttag aaggcaacta tcaaaattta agcgatgatg
     1261 aattaaaagc cgaatttgca aaatttaaag agcaaatttt aagcggagaa aaaaacgaaa
     1321 atgatgtttt aaatgatgtt tttgctatag tcagagagac aggtaagaga actttaaata
     1381 tgcgtcattt tgatgtgcag ttaatcggtg gtatggtttt gcacgatgga aaaatcgcag
     1441 aaatgaaaac aggagaaggt aaaactcttg tagcaacctt acctgttgtt ttaaatgcca
     1501 tgagtggcaa aggcgtacat gtcgttacag taaatgatta tctagccaaa agagatgctg
     1561 agcaaatgag tgcgatttat aattttttag gttttagtgt tggcgtggtg ctttcttctc
     1621 aaaatagtga tatagaacac aagcaagctt atgattgtga tattacttat ggaaccaata
     1681 atgagtttgg ttttgattat ttgcgtgata atatgaaatt ttcaaaagct gaaaaagttc
     1741 aaagagagca taattttgtt atcgtagatg aagtagatag tattttaatt gatgaggcaa
     1801 gaactccgct tattatcagt ggtcctacaa atcgtacttt agatggttat attaaagcca
     1861 atgaagtagc taaacaaatg caaaaaggtg aagcagtttt accccctgca aaacctgagg
     1921 gtgattttgt agtagatgag aaaaatcgta atattttaat tacagaagca ggtattgcta
     1981 aggctgaaaa actttttggc gtagaaaatt tatacagtct tgataatgct atcttagctc
     2041 atcagcttga tcaagcctta aaagcacata atctttttga aaaagatgtg cattatgttt
     2101 taagaaataa tgaagttatc atcgttgacg aatttacagg gcgtttaagc gaaggacgtc
     2161 gttttagcga aggattgcat caagctttag aagctaaaga aaatgtaaaa attcaagaag
     2221 aaagccaaac tctagcagat attacttttc aaaattattt tagaatgtac aataaacttg
     2281 caggtatgac aggaactgca caaacagaag cgactgaatt ttctcaaatt tatagtttag
     2341 atgttatttc tataccgaca aatattccta ttaaaagaca agataaagat gatcttatct
     2401 ataaaactca aaatgaaaaa ttcaaagctg taattgaaga gattaaaaaa gccaatgcta
     2461 aaggtcagcc tgtacttgta ggaaccgcaa gtatagagcg cagtgaagtt tttcacaata
     2521 tgcttgtaaa agagaaaatc cctcatcatg ttttaaatgc taaaaatcac gagcaagaag
     2581 ctttgattat ccaagatgca ggtaaaaaag gtgctgtaac tatcgctaca aatatggcag
     2641 gtcgtggtgt agatataaaa atcgatgatg agattagggc tttgggtggg ctttatatca
     2701 tcggtacaga aagacatgaa agccgccgta ttgataatca acttcgtggt cgtgcaggaa
     2761 ggcagggtga tcctggaata agtcgttttt atctaagttt agaagataat cttttaagaa
     2821 tttttggtgg ggatcgtatt aaaagtatta tggatcgctt gggcatagaa gagggcgaaa
     2881 gcatagaatc aagaatcgtt acaagagcgg ttgaaaatgc gcaaaaaaaa gttgaaagct
     2941 tgcattttga aagcagaaag catttgttag aatacgatga tgtagcaaat gaacaaagaa
     3001 aaactattta tcgttatcgt aatgagcttt tagatgaaaa ctatgatatt agagctaaaa
     3061 tttctcaaaa tatcgctgaa tatagcgcaa atgtaatgaa tgattatatg cttgacgaaa
     3121 gcggttctaa tgtaaatttt gaaaatttga aagcaaaaat tttgtatgaa tgttcaactc
     3181 agattagtga aaaagatttt gagaatttaa gcgtcattga aatgcaagac aagctaagtc
     3241 aaattcttga aaattcttat aatgaaaaga tgttaagact tgagattaaa gaattgcgta
     3301 atatagagcg tattttatat ttgcaagttt tggataatgc ttggagagag catttgtatc
     3361 aaatggatat tttaaaaaca ggaataggac ttcgtggata caatcaaaaa gatcctcttg
     3421 tggaatataa gaaagaaagt tataatcttt tcttggagtt ggtcaatcgt attaaatttg
     3481 atagtattaa actacttttt agcgtgcaat ttaatcaaga agaggcgcaa aatttagaaa
     3541 ataaagccaa tgaagaaaat gaaaagctac ttcaaagctc agtagaaatg ggcgcaagcg
     3601 aagataatct tggcgaagct gaatttaaaa aagttccacg caatgctcct tgtccttgcg
     3661 gaagtggaaa aaaatttaaa gaatgccatg gaaaaagtgg tcctaagcaa ggaattttag
     3721 cttgaataaa agcgttttaa aatatttact ttttaagtat ttaagatttg ataaagagca
     3781 accctttatc aatctttcta tgcttttggc ctttttagga gtttgtgtag gactttgcgt
     3841 tttgcttgta gctatggcaa ttatgaatgg ttttgataaa gaatttgaaa aacgcttttt
     3901 tgtgatgaat tatcctatta ctattttgcc taaattctac gctcctgtaa atgatgaatt
     3961 tatagatgag ttaagaaaaa catttccaaa tttgttattt agcccttatt taagcactca
     4021 agttgttgta aagggagata atcgttttga aggtggtgtg ctttttggcg ttaattttaa
     4081 tgatgaaaaa aaaataaacg aagtggttgc taaagcttta aaggatgaga atttaagtgg
     4141 ttttgatata cttgtaggat cagcacttac tgatgaattt ggtttgcata aaaatgacaa
     4201 actttcactt attttttcaa atcttaatcc tagtggattt tctttagtac cgcaaactaa
     4261 acgttttgat gttaaagcgc gttttacttc agggcttgca ttttatgata aagcttatat
     4321 gtacacagat gttgatgcat tgaaaaaagt acttggaata cctaaaaatc caaattatga
     4381 tggaattcat gtatatagcg ataatgcttt taaggatgtt gaaaaaatta aatcttattt
     4441 aaaagatgat tatgctgtgg tgggttggtg ggagcaaaat aaaaattttt tttcagcctt
     4501 agaacttgaa aaaagagtgc tttttatagt gttgatgctt attattttgg ttgcaagttt
     4561 aaatatagta agttctttat tgatgatagt aatgaatcgt cgcagtgaaa tagcactttt
     4621 acttgctcta ggtgcaagca aaaatgaggt aaaaaagagt ttttttgcct taggtatgct
     4681 tattggtggt ggtggtatga tagtgggtgt ggtacttgca ttttttgctt tatggctttt
     4741 gggaaatttt gatattgtaa ctttacctgt tgatgtttat ggaaccagta aattaccact
     4801 tgatttatct ttaatggatt tttctttaac cattgtgggt gctttaataa tcatagcttt
     4861 atcatctttt tatcctgcaa aaaaagcaac tcaaattaat attttagata ctttaagaaa
     4921 tgaataaatt gtaattttgg agatttttat tgtctttgtt tactcaaaaa aataagaatt
     4981 ttaaaccttt aaaacctcta tcaaagtcaa aaataatcac taatttaatt cttttgattt
     5041 tatttttaat attgttttgt tattgtagtt ttagtataag tgcttatcat tttgatttta
     5101 gcgcaattgc aacctataaa gaaaaatttc ttcaaggttt tttaaatact ttaataatca
     5161 gttttttttc tttattgttg agtataattt tgggtggagt tttttgtgct ttttctttaa
     5221 gttcgattgt ttttttaaga tttttatcta cattttacat agagcttgtc agaggaaccc
     5281 ctttactagt gcaggtatta ttgatatatt atatcattgc aaataattta ggacttgata
     5341 atcgatatgt ggctggagtt attattttat catgtttttc tgctgcttac ttagctgaaa
     5401 tatttagagc tggaatttta agtatttcta tatctcagct tgagagcgct agggctttag
     5461 ggttaaaaga gatgcaggtt tttgcgtatg taatttttcc ccaagcttta aaaaatattt
     5521 tagcaccgct gagtggacaa tttgcaaatt taattaaaga tagttcctta ttaagcgtta
     5581 ttgctgtaaa tgaattaacc caaagtgcgc aagagataaa ttcttatact tttgctactc
     5641 ttgaagctta tgtaattttg gctattacat atcttgtttt gactttacct ataagtatat
     5701 tttctcgtta tttggagaga aaatgccaaa aatgatttaa aaaagcttga caaatagagc
     5761 taattttggc ataatcacat ttttatttca gaaaatgtct cgttagctca gccggtagag
     5821 catctccctt ttaaggaggg ggccgttggt tcgaatccaa cacgggacac cattataaag
     5881 gtcgcttagc tcagttggta gagcgccacc cttacaaggt ggatgtcata agttcgagtc
     5941 ttatagtgac caccatttta taaaatcata aataggtttt ataatctcta cttctttact
     6001 ttggatgcag cggtagttca gctggttaga atgccgccct gtcacggcgg aggtcgcggg
     6061 ttcgagcccc gtccgctgcg ccatattgtc tcgttagctc agccggtaga gcatctccct
     6121 tttaaggagg gggccgttgg ttcgaatcca acacgggaca ccatttttat tgttagggtt
     6181 atgacccttt cgtctagtgg cccaggacaa cactctctct gtgtggaaac agaggttcaa
     6241 atcctctagg ggtcgccaat ca
//
LOCUS       DARGEM010000090         6228 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.090, whole genome shotgun sequence.
ACCESSION   DARGEM010000090 DARGEM010000000
VERSION     DARGEM010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.090"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..730
                     /locus_tag="SFZ78_001349"
     CDS             <1..730
                     /locus_tag="SFZ78_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212206.1"
                     /translation="AFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTIT
                     NYYNTQEQYNEAEQLGMFGHINIGLQSLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQ
                     NEDGSYSKEALFMSFLKSTGVSPREGSATLNPIAKSYAEAMTKESFDGSLTSLDDIMT
                     GKVDFASLLKGYAQEGWLDADIYAMEKGVAWQNTSIGYGGAWFDREFNQVKANGWKAS
                     NQSIDSYVNSIMDRLNNLIGQTRV"
     gene            824..1594
                     /locus_tag="SFZ78_001350"
     CDS             824..1594
                     /locus_tag="SFZ78_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG8212207.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(1610..2344)
                     /gene="fliP"
                     /locus_tag="SFZ78_001351"
     CDS             complement(1610..2344)
                     /gene="fliP"
                     /locus_tag="SFZ78_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG8212208.1"
                     /translation="MKKILLFLLLSMSLFAAEVTIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            2487..3776
                     /gene="glmU"
                     /locus_tag="SFZ78_001352"
     CDS             2487..3776
                     /gene="glmU"
                     /locus_tag="SFZ78_001352"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG8212209.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            3773..4927
                     /gene="coaBC"
                     /locus_tag="SFZ78_001353"
     CDS             3773..4927
                     /gene="coaBC"
                     /locus_tag="SFZ78_001353"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG8212210.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTRNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCDKSVVVTGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQSKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            4924..5541
                     /locus_tag="SFZ78_001354"
     CDS             4924..5541
                     /locus_tag="SFZ78_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212211.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGVSIFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            5545..6213
                     /gene="uppS"
                     /locus_tag="SFZ78_001355"
     CDS             5545..6213
                     /gene="uppS"
                     /locus_tag="SFZ78_001355"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG8212212.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRAIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
BASE COUNT         2300 a          754 c         1172 g         2002 t
ORIGIN      
        1 tgcttttaat gataccaata aaacaagctt cactgaagca gatataaatt ctatgcctaa
       61 gggaattagt gaattatcat ctgataaaac tataggtatt atgccgaaaa attatgataa
      121 gctaacaata acaaactatt ataatacaca agagcaatat aatgaagcag aacaattagg
      181 aatgtttggg catattaata taggcttaca atcattaaat ttcactccgc aaagtatgca
      241 aactcaaaat ttagataaag acactgcaat agatactttt aatcctgata tgtcagttta
      301 tccacaaaat gaagatggaa gctactctaa agaagctttg tttatgagtt ttttaaaatc
      361 aacgggtgta tcgccaagag aaggtagtgc aacattaaat cctatagcta agtcttatgc
      421 tgaagctatg actaaagaaa gctttgatgg atcattaact tccttagacg acatcatgac
      481 aggcaaagtg gattttgcaa gtttgttaaa aggctatgca caagagggtt ggcttgatgc
      541 agatatatat gcaatggaaa aaggagttgc ttggcaaaat acaagtatag gttatggtgg
      601 agcttggttt gatagagaat ttaatcaagt aaaagctaat ggttggaaag caagtaacca
      661 aagtatagac tcttatgtta attctataat ggatagactt aataatctta taggacaaac
      721 tagggtttag aagttttaat tttttaagtt tgaaacaaat tgctaataac aaaataagat
      781 aaaattagta taattttttt acaaaaaaat ttgaaaggaa attatgaaaa aaattatttt
      841 gatttttatc tctttttttg ctttaaattt gagtgcaaaa gatttggttg taggaatgga
      901 gcttggatat ccgccttttg aaatgagcga taaaacaggc aaagcaagtg gaattagcgt
      961 ggatttttta gaagcttttg caaagaaaaa cggctataaa cttgtagtaa aaaatatcgc
     1021 ttgggatggt ttaatacctg ctttaaaaac agccaagata gatcttatta tgtcctctat
     1081 gacaattacc gatgagagaa agaaagtggt ggattttagc attccttatg ctaaggcaaa
     1141 tttggctatt ttaactcctt tgaactctga tattacaaat atcaaagatt tagataaaaa
     1201 gggcaaagtt ttggctttaa agcgtggttc tacagggcat ttatatgcgg ttaaaaattt
     1261 aaaaaatgca actattaatt tatttgataa agaaaatgct gctattttgg aagtgattca
     1321 aggcaaggct gatggatttt tttatgatca acttacgatt tatcggactt ggcaaaagca
     1381 tcaagataca accagagcca ttttagcgcc ttttcaagaa aatcctgagt tttggggtat
     1441 agcagtacaa aaaggcaatg cagaacttaa aaaagagctt gatgaattta ttgcagaaag
     1501 caaaaaagat gggctttttg attctttagg agagaaatat cttaaagatg ttaaagatac
     1561 ttttaaaaag aataatttag aattcttttt ctaagaagga ttttccttct taggttacaa
     1621 agctttccac aagcctttgc actagcaaat tccatccatc cactaataca aaaattaaga
     1681 gtttaaaagg taaagagatc atagtaggag gcagcatcat catacccata gccattaaaa
     1741 ctgagcttac aaccatatct atgactaaaa agggcaggta gattaaaaac cctatttcaa
     1801 aagcggtttt aagctctgaa atcataaaag caggaactaa aaccgtaagg ggaacatcat
     1861 ctatggtttt gggattgggt agattgcgta tgcgataaaa aagggctaaa tctttttcgc
     1921 gagtattttt aagcataaaa tctttaaaag gctttgctcc ttttataaaa gcctcttcat
     1981 agcctatttt ttctgctaaa taaggtttta taccttcatt ataggatttt gtagctacag
     2041 gttccatgat aaaaaaagtt aaaattaaag ccaaggttac caaaatagtg ttaggtggca
     2101 tactttgcgt ccccatagct tgtcgtaaaa atgaaaatac tacaataaga cgcaagaaag
     2161 aagtcataac aaaaactata cttggagcga gcgcaagtat ggttaaaaca atcactatat
     2221 ttaaagtagt aacaagctga ttaggtgtat tgggtgcact taagcttaaa tttactgtag
     2281 ggatagttac ttcagcagca aataagctca tgcttaaaag taaaaataat aatatttttt
     2341 tcaaaattta aaaacctttt tttgtttttt attaaagaaa tttaaatttt atcttttgat
     2401 gactaaaaac tagtttaagg gtattaggat tttaacttta aactgctaaa atagtctttt
     2461 agacttctta ataacaaagg taaaaaatga aaacttctat tttgatttta gcggcaggat
     2521 taggcactag aataaaatca caaaagccaa aggttttgca agagctttgt caaaaaagta
     2581 tgattttaca cattttaaaa aaggcttttg ctttaagtga tgatgtaagt gtagttttat
     2641 cgcatcaaaa agaacgcgtt gaaaaagaaa ttttagaata ttttccaaaa acacaaattt
     2701 tagagcaaga tttgcaaaat tatccaggaa ctgcgggagc tttaagtggg tttgagccta
     2761 aaaatgaaag agtgttgatt ctttgtggtg atatgccttt agttgagcaa acaagtttgg
     2821 aagctttgtt gagtaataat gcaaaattaa atctagcagt ttttaaagca agagatccta
     2881 aaagttatgg tagggtggtg ataaaaaacg atagcgttga aaaaattgtt gaatttaaag
     2941 atgcaaatac gcaagaaaaa gagataaata cttgcaatgc tggggtttat gtgattgact
     3001 cgaggctttt aaaagagctt ttacctttga ttgataacaa taatgcggca aaagagtatt
     3061 atttaaccga cattgtaaaa ctagcaaaag aaaaagatgt gatgattaaa gcagtttttg
     3121 tagatgaaga tgaatttatg gggattaatg ataaatttga actcagtata gctgaaaatt
     3181 tcatgcaaga aaaaattaaa aaatactgga tgcaacaggg tgtgattttt catttaccgc
     3241 aaagcacttt tataggtgca gatgttgaat ttgtaggtga atgtgaagta tatgaaaatg
     3301 taaggataga gggcaaaagt aagattataa actctatcat taaaagttca agcgtgatag
     3361 aaaattccat cgtagaaaat agcgatgtag ggcctttggc acatttgcgt ccaaattgtg
     3421 agttaaaaaa cactcatata ggaaattttg tagaatgcaa aaatgcaaag ttaaataccg
     3481 taaaagcagg gcatttgagc tatttaggag attgtgagat agatagtgga accaatatag
     3541 gctgtgggac tatcacttgt aattatgatg gggtaaaaaa gcataaaacc atcataggaa
     3601 aaaatgtttt tgtaggttcg gatacgcaat ttatcgcacc tgtaaaaatc gaagatgaag
     3661 tgatcatagc agcaggaagc acagtaagtg tcaatgtaga aaagggtgct ttgtttatca
     3721 atagagcagg gcataaaatg ataaaagatt attattataa gaaatttcaa aaatgaaaac
     3781 catactttta gccattagcg gtagtatagc tttttataaa tcttatgagc ttatttcttt
     3841 gtttaaaaaa gaaggcttta gggtaaaagt tttgctttct aatggtttgt taaaatttgc
     3901 tagcaaaatg agttttgaag ccttggttga tgaagtttta tgtgaggaaa atgaaagttg
     3961 gcaaaattca aacaatcaca tagcttttag caaggatgta gaccttgttt tgtttgcccc
     4021 tgcaagtgtt aattctatca ataaacttgc ttttggtata gcggataatc tttttatcca
     4081 aaccttaatc gcagcaaata aacctcttat catagctcct gcggcaaata caaatatgtt
     4141 tcatcatttt agcacgcgaa attctttaaa gatacttaaa gaaaataaag ctttgattat
     4201 agagcctatt tgtaaagttt tagcttgtaa agatgaaggc gtaggagcct tagctgaagt
     4261 taaggatatt tttaatatca ccaaaagaga gcttttaaaa gaaaagtttt ggtgcgataa
     4321 aagtgtagtt gtcacaggtg gcggcacaaa agaaaagatc gatgatgtgc gttgtgtgag
     4381 taatttttca agtggaaaaa tggcaaaggc catagctgac gctttttatt ttttaggagc
     4441 tagggtaaaa cttttaagct ctgtggaatt tgatacgcct tatgagcttt gcaaatttga
     4501 aagttctaag gatctaaagg agcttttgga taaaaattta aatcatgact ttttgattat
     4561 gacggctgcg gtgagtgatt ttatccctca aagtgtaaaa gggaaaatta aaaaaaatga
     4621 gcatttacag ggtttaaatt tgcatctatc tttaaatgaa gatttgctta aaacttgcaa
     4681 atttcaaagc aaaaagatag gttttaagat ggaatttgat tctcaaaatg ccttagaaaa
     4741 tgcgaaaaaa tctttaaaag ataagcaact tgatatggtt tgtcttaata tcattgatca
     4801 aaaaaattat tttggaagcg atcaaaatga gctttatttt atcactttaa acaatgaaaa
     4861 taaaagcact ttgcaaagca aagaaaaatt ggcatttgaa ttagtaaaat ggtgtgaaaa
     4921 attatgagta tgattaattc taccttacct atacaaatga aagttttagc taaatcaggt
     4981 tatggacatt atacgctttt attaaatcat aaaaagattc aaaccaaaag catgatagag
     5041 cttgaaattg gtgctgaata tttagctgaa ctttatatgc aaaatggtgg agttatacaa
     5101 tttaaacatc tttcaaagcg tcctaatttt aaaccttttg aagagggatt ggctttgata
     5161 atcgctattt tagaggataa aatttcttat aaaaaattca tcatacaaaa tcttttagat
     5221 tgtaaagata tagagcgtta tcagatatta aaagaaatgc tttttgcaag ttttgaaaat
     5281 atttatcata ttccttttat ctttgaaaat aaatcttgct tgtttcaaat gcgtaaaaga
     5341 gcaaaatatt tagaaattta cttatatttt agtgtttttg gagctttgaa aattttaata
     5401 gattcacaag gtgttagtat ttttacacct tttgctaagg tgcaaaaatt tttaaacgaa
     5461 catttagatt ttaatgtatc gcaagaaaac aagattgaac ctttgtttgt tttcaaaagg
     5521 ctttttgatt ttaaaggatg aaaaatgaat gaattaaaac accttgctgt tgttatggat
     5581 ggcaataggc gctgggctag ggctaagggt tttttggcaa aacttggata ttcccaagga
     5641 gttaaaacta tgcaaaaatt gatggaagtt tgcatggaag aaaatatttc aaatttaagc
     5701 ctttttgctt ttagtacgga aaattggaag cgtcctaaag atgaaattga ttttattttt
     5761 gaacttttag atcgttgttt agatgaagct ttagaaaaat ttgaaaaaaa taatgtgcgt
     5821 ttaagagcta taggtgattt atcgcgcttg gaagataaag taagagaaaa aattacctta
     5881 gttgaagaaa aaacaaagca ttgtgacgca ctttgtgtta atttggctat aagttatggt
     5941 gcaagagatg agattataag agctgctaag cgtgcgattg aaaaaaaact tgagctaaat
     6001 gaagaaaatt taacgcaaaa tttagattta cctttagatg tggatttgat gcttcgcgtt
     6061 ggaaacgcta aaagactttc aaatttctta ctttggcagt gttcatatgc tgaaatttat
     6121 tttagtgaaa ctttatttcc atctcttacc aagagagaat ttaaaaggat tattaaagaa
     6181 tttagaaata gagaaagaac ttttggaaaa tgatattttt cataataa
//
LOCUS       DARGEM010000091         6034 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.091, whole genome shotgun sequence.
ACCESSION   DARGEM010000091 DARGEM010000000
VERSION     DARGEM010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.091"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            122..847
                     /locus_tag="SFZ78_001356"
     CDS             122..847
                     /locus_tag="SFZ78_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8212213.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGDR"
     gene            844..2715
                     /locus_tag="SFZ78_001357"
     CDS             844..2715
                     /locus_tag="SFZ78_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8212214.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2719..4356)
                     /locus_tag="SFZ78_001358"
     CDS             complement(2719..4356)
                     /locus_tag="SFZ78_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8212215.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4360..5244)
                     /locus_tag="SFZ78_001359"
     CDS             complement(4360..5244)
                     /locus_tag="SFZ78_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG8212216.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDSKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5298..>6034)
                     /locus_tag="SFZ78_001360"
     CDS             complement(5298..>6034)
                     /locus_tag="SFZ78_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8212217.1"
                     /translation="NKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQNFFDQK
                     LNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNSLVKDL
                     NKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRG
                     NNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSG
                     YGFKDALDGKNESEKVNLELVLAKYF"
BASE COUNT         2179 a          988 c          795 g         2072 t
ORIGIN      
        1 atataaattt gcaatcaatc cattgttttt ataagaattt taaaaattca tttgtcaaat
       61 tattatttta ttttcaaaaa atacgatata aaaataatta ttacatccaa aaaggaaaaa
      121 tatggaagtt aaatggagta gagattttag cattaaaaat atgcaattag acaaacaaca
      181 cgaactaatt tttgaaatta ccaatcttgc aaatgattta gctctaaaca ttcaagataa
      241 taatacacaa cacaaaaatg atttaaaaca aattcttgta aagctatttc aatacatcaa
      301 aattcatttt aaagatgaag aaaaatttat ggaaagcatt gattttcctt tgattgaaga
      361 acataaaaaa tctcatcaaa tattagtaga aaaaactaaa gagcttttag aacactcaaa
      421 tgatattgta aaaatgtctc aagaactttc catattaacc aaagattgga ttttagatca
      481 ttttgctaat gaagatttat ggatagctaa ttttacaaaa aaaaccctac accttcaaga
      541 aatccattat accttagaac aatacataaa actaaaatca atcaaacaag acctaagagc
      601 tgaaaaaact catgattata tttgcaattg ttctttgcgt atccatgcag ttccacagac
      661 tatacatcaa gagcttgtta gcaaagaaaa taccttaaag tgcgaaaaat gtgggcaaat
      721 tttagttcat ttggattatt ttgatttgaa tcaaaatttc gaaaaattca atgctatttt
      781 tgaagatgca ctacaaaatc accatttcac gactcaaaaa aatgatatgg ggggggggga
      841 tagatgaatt ttcaagtaaa aaccttagaa actttcaatc cttttgaaag tttaaatcat
      901 gaacaagcaa acacagaaca aattcttgat tttagagtta tagattttaa acttctgtgt
      961 tctagtgtaa aaccagcaaa aacaaaaact tatgaaagaa aggattttga cttattttat
     1021 gcagatgatt tttttgtaaa aaactacaat accatagtgc aaaaatttct tatagaaatt
     1081 tacccaaaaa cccaaagttt tccttttaca gtcaaactta gatccaactc caacctaacc
     1141 catctaaaag ccagtatcaa ccttacagaa aattttaaat attaccctaa tttaaaattt
     1201 gatattttgc aaaatatcta caaaataatg atcaaacaaa aatttttaat cttaagactt
     1261 gataaaaatt tatttgataa gattgatgat tttatcttat caatacaaaa aagtccatct
     1321 attaaagaaa tagagcttga aattgccaaa ggtgtagata agattgaaca taaaagtgat
     1381 gaaattattt atcatagaga tgttaacgaa gaatgttttg acgaaaatat taactatgat
     1441 gaaggaaact actgtaaacc tattgaaaaa aatgagctac tttttgaata catttataga
     1501 attcttggaa aagaaggacg aaatttaaga ggagagatac ttcatttaaa tccaatagcc
     1561 tttcttgata atccttttat cataaaagat gaaagcattt acacagaaga attagaagat
     1621 agaattaaat attttagtgc caattatgga tttttaaaca aagatcatac aggatattgt
     1681 atcgcaaata atttaaaatt atcacaaata gggcttaaaa caaccggttc aatcaaaaca
     1741 aataccgatg aaaatataaa cttagaaatc actaattttg atataagtga tgatgctatt
     1801 aaatcaggta ttgtaaatgt tcaagcttca aatataaaag taaatgggaa tgttggagca
     1861 acaaaacttt atggaaaaaa tatcagtatc aaaggcttaa ctcatgcaaa aagcgaaatt
     1921 tttgcacaag atatttttat tacaacacac aaaggaactt tgcaagctga cactgtatat
     1981 ataaaaaatt tagaaaatgg gacaattata gctaaaaatg tatttgttga aaactgcatg
     2041 ggtggaaaaa tagaagcaga aaatatttat atttgcaatt tactaacgga taatacttta
     2101 tatccaagaa aaaatctaat cataacaaac aatataaaat ttaaaaacaa tatcgtagtt
     2161 tcaccactag tttctattga aaacaactca gatacagaat gcgaaaatct taaaaatcta
     2221 agccttaaaa taaaaagtaa gcttgatgac accataagca aaatgcaaaa ttactatgat
     2281 tatctaatca aaaatcaaat caaaatcatc aaacttcaaa agactaaaaa tcctagcgcc
     2341 atagaaatga aattttcaaa tctttatcac gatatcataa aaaaatacaa tcatcttagc
     2401 atttcgtata aaaaatttat aaaattaaaa tatcaaattg atgcgaaatt aaatttctta
     2461 aatgaaatgg tttacaatgt aaaaatatac ataaaagccg aaaatatcgg agaggataat
     2521 tttttaaaat tttatcctaa cacaaacacc aaccttgaac taaaacatca tataaattta
     2581 aaagactatg aaaaggtttt atatcttgaa aaaggacagc aagtaagtta tattaaatca
     2641 agccataatt atagcgaaag cgacatagaa gaaattaaaa ttatttttga aaaattagaa
     2701 aaagataatt cctaagaatt atcttttcat attaatggct ttttgtatca tctgatcact
     2761 tgtagtgata ctttttgagc ttgcatcaaa ggctttttga gttacgataa ggtttgaaag
     2821 ctctgcgctt aaatcaacat ttgattgttc taagaatccg cctttaaatt tagctgtatt
     2881 aacaacttga ccatctttca taataaaact tgcatcaccg ctatttgccg ttgctgcaaa
     2941 aatattatct cccatagcaa ctaatccttg ctcattgata aaattatata aagcaagctt
     3001 tccaactatg gcatttttac cattgctaaa ttgcgcaaca atacttccat catcggatat
     3061 attatattgt tcaaaaaacc cttcagctac accatcttgt tgtgtaacta catttttttc
     3121 gacgccttgt ttaatataaa tcccactata acccgaacca ggcttgttag catcataagg
     3181 agaacctaaa tcaatattaa ttgttccacc atttggattt gcaatgcttg taatattgtt
     3241 ttgaagcaaa gcaccatttt tatcaaaaac catatttcct tcagtcggat tgcctacggc
     3301 attgccatta gaatcataaa tttgtgcaat agctttatat tgtatattat cgccttcttg
     3361 cggtaaaact ctttcaagtg taacccttaa agtgctttta cttccatctg cattataaat
     3421 aggggattct aaaatatctt tattggcttt ttgttgctct gttgaaattt gagctgtatc
     3481 aagcttgatg ctattttcat ccaatccttt taaatcaagc tcgttacttt taaaatttag
     3541 attttcatct aaagtcgctt caaagcttgt ttttacgcca ttatcatcag tgaaatttaa
     3601 aataatccta tcacccgctt tagcactaaa cacatcttct ttgctaacac taccactaac
     3661 tacatatttt ccatcttcag tttttgtaat gttaaattta ctaggatcaa gatctacttt
     3721 aactacttct gttgttgtgt tagtatttaa acttccactc cattttacat tttgagttac
     3781 ttgaggaggt aaatacatat tcacaggtac tttaatagcc ccttgagaag ctgttgtgcc
     3841 tatactgaaa gaattatttg aatttacagt aaaaccatta tttaccggag ttcctgtgtt
     3901 aagataatcc cccataagcc cagcaactct atcgctatag ttaataccag taaaagcagg
     3961 attcattgtt cctaaaacaa aatttccata agaatccacc aaatatccat tggcatctct
     4021 tctaaatgat ccatttctag tatagtaagc attaccatca gcccctaaaa ccccaaaaaa
     4081 tccttttcct tgcaaagcca catcaaattc gccatcactt gcaacaggag aaccctgttc
     4141 gaaaacaact tgagaagatg ctgcaccgct accataacca ccttgagcag ggttggttga
     4201 ttgggttgtt atggtagtat aaaaaatatc tttaaattga gcatcagagt atttaaagcc
     4261 cgtggtattg acatttgcta tgttattagc agtgatatca ataccaaagc tattgctttt
     4321 tactccagaa atcccattat aaaatgaatt catcatggct tatgcctttt cctctttgtc
     4381 gccatcttct gtagatccag acccagaaga atctccatcg cttgaaccac cacttgagtc
     4441 tccacttgaa ccgcttcctc cagtagatga agatgaacca agcttataat ctgttatttc
     4501 ttgtattgca tcaaaaggaa cttcttgtcc agccattttt gcataggcaa caccatcttt
     4561 aaaaacaaca ccttcgatag gataagttcc gtaatttgca gtgatttttt caccattttt
     4621 attattataa accattttaa cagtgtactc accatcacct gcataaaccc catcgttatt
     4681 tcttcctggc cactccatag taaataaacc ttgagaaata gatttagaat cgcttttttc
     4741 actgaaaaca agtttattat tgctatcata aatttctagc gtaacaccgt tttcatcaga
     4801 atcttcaggc aaatacattt taagagcgat aagctcatct gcacctgtaa gtttgatttt
     4861 attatctgaa acagttgcca ttttaccaat agcccctaaa gctgaagtac tcatacttgt
     4921 actaaaagaa tcagaaagct tttgcatagt ttcaaccatt ttttgcatag ttgtattggt
     4981 attttgctgc atttcaagtg cactaagctg tgaagtttga gtaagcattt tatcgctatc
     5041 cataggatct gttggatctt gatgttgaag ctctatcaaa agaagtttta aaaacgcatc
     5101 cttatctaag gtagcatttg gattgctcac tattcctgag ctactgcttg aatctgttct
     5161 agttgttcca ctagtacttc ctgaagaagt agtacctgaa gttgtagcag tggtatttaa
     5221 attccaatcc gatgatgata tcattataaa ctccttttta tttagttttt tattatttaa
     5281 gcaataagtg ttccaattta aaaatacttc gctaaaacaa gctctagatt gactttttca
     5341 ctttcatttt ttccatctaa agcatcttta aaaccatatc cactacgatt ttttccttga
     5401 ttttgatttt gctctctttt accttgatca ctaaaattca tttcaagtcc agtaaatccc
     5461 atatttacaa gagaattttt aaactcggct tgattttgga taaacaaatt cattgcattg
     5521 gtattggagt tgaaattgat atgaaggtta ttacctcttt gtatcaaagt tacctccact
     5581 tctccaagat tattaggatt tagagtgata ctaagtttag taataggcgc tttgtattga
     5641 tccacagcct cttttaaatc ttgtgaaaaa tactgcaaag tttctttagg agtgatattg
     5701 cgagcattgt tttgtgttac tttatttaaa tctttgacta aagaatttaa ctcatctaag
     5761 ctatttttat ctacattttc actgtgcgtt tttgtttgct cttgagtaaa agtttcttta
     5821 ttagtagtat tattattaaa atttgcatta ttctctttgt tttgaactac ttgagtttta
     5881 tttaaatttt caaaatttaa tttttgatca aagaaatttt gttttatatc tttattttct
     5941 ttgttgttgt ttttaggctc tttatttaga ttaaaatctt tttgtgttaa atttgaaact
     6001 aatttctgag tatctttaac aatttcttta ttta
//
LOCUS       DARGEM010000092         5977 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.092, whole genome shotgun sequence.
ACCESSION   DARGEM010000092 DARGEM010000000
VERSION     DARGEM010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.092"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..613
                     /locus_tag="SFZ78_001361"
     CDS             <1..613
                     /locus_tag="SFZ78_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HEG8212218.1"
                     /translation="CDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPLRIGEQVL
                     VIPVRGDLNSGVILRGLYQEKHRAKNIDENTFNIDFEDGTHLEYNSKSSTLKLDVVKN
                     INITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTSGEGGASG
                     TFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            810..1100
                     /locus_tag="SFZ78_001362"
     CDS             810..1100
                     /locus_tag="SFZ78_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HEG8212219.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            1097..2263
                     /locus_tag="SFZ78_001363"
     CDS             1097..2263
                     /locus_tag="SFZ78_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEG8212220.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IQRLKGVKPAAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFVAKIKQLEFFKGGASEESDEALRERAVMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVNVELAKKREFIVDAKLLLLELSRANEISQKIHALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            2260..2880
                     /locus_tag="SFZ78_001364"
     CDS             2260..2880
                     /locus_tag="SFZ78_001364"
                     /inference="COORDINATES: protein motif:HMM:NF021220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HEG8212221.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANA
                     QISGETIEILPFQTTFLENEIKSTKNVFGIFMCEITRTNIDFKGVY"
     gene            2880..3959
                     /locus_tag="SFZ78_001365"
     CDS             2880..3959
                     /locus_tag="SFZ78_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8212222.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSI
                     KATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTG
                     GKTPIAIKIQQIDNVVNQASISIYINNSLIKKINAIQYTNSTGKYIPLTYYEGILKPN
                     DTYKIELFNIVMDKPNIEATILNVR"
     gene            3969..4475
                     /locus_tag="SFZ78_001366"
     CDS             3969..4475
                     /locus_tag="SFZ78_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HEG8212223.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPP
                     KSEEELLNEAKELKINEINAKKENILNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            4472..4843
                     /locus_tag="SFZ78_001367"
     CDS             4472..4843
                     /locus_tag="SFZ78_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HEG8212224.1"
                     /translation="MTKAELKRVCVKPYDKDRFEVISDYAFSLPNYKGIVPQGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLK
                     IFVFYHSCNLYHAIKCLIKGK"
     gene            4943..5956
                     /locus_tag="SFZ78_001368"
     CDS             4943..5956
                     /locus_tag="SFZ78_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212225.1"
                     /translation="MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLF
                     KEELVNKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIIPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIA
                     HVFKKYNGGSDECCLWSSSGTREVSIELENTSMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYVFLFEISKQDQIVMKKELNLNPKKTKNTKN
                     VKK"
BASE COUNT         2303 a          764 c         1092 g         1818 t
ORIGIN      
        1 ttgcgacatt aaagacaata aagctaaggt tgctattgga gatatggtaa cggatttttt
       61 aagtgttttt caaagtctag ctaattctta tgcagtgagc ttttctcctt taagaatagg
      121 agagcaagta ttagtcatac ctgtgcgtgg ggatttaaat agtggagtta ttttgcgtgg
      181 gctttaccaa gaaaaacata gagcaaaaaa catagatgaa aatactttta atatagattt
      241 tgaagatgga acgcatttag aatacaactc taagagtagc actttaaaac ttgatgtggt
      301 taaaaatata aatatcactt gtgtagataa aaccacccat aaccaaaaca acaccttaaa
      361 tactaaaaat catactacaa acgctaatac cataacgctt aacgctccaa gtattaattt
      421 aaatggtaat actcaaattg caggagcaat ttctacaagt ggcgaaggtg gggcaagtgg
      481 gacttttagc ataaaaggaa atttaaattt aattggtaat ttacaagtta gtggaaatat
      541 aagcgatagc aaaggcgatt taacaaatca tacccattct tgtacttgtg gtgccacagc
      601 ttcgccaaga taggaaaaac tatgaaagaa ttatttttgc ttttattttc attagtcttt
      661 tttatgctct tttgcatggg ggcattttat gcttttttaa acctaaactt ttttattaaa
      721 agcattttta taggcttttt tatagctttt atgtttttag gtttttctca aatactagaa
      781 aacatttttg aattttacaa aggtttaaaa tgaattacat ggtaagcatc gaagaaagta
      841 tcaaagacat tttaatcact cctttaggct caagagtaat gagacctgag tatggttctt
      901 tactttatac actcatagat agaaaaatcg atgatgattt taagataaag cttactagat
      961 atacagcaga ggctatttca aagtgggaaa aaagagtaaa gctaaaaggt gtgagactta
     1021 atgagtgtaa agacaataaa ttaagcatta ccttgctttt tgaaaattat ggggatttaa
     1081 ccatggagct aggcaaatga gtgagctttt aagtgcaaat gatagctatt ttaaacaaag
     1141 ctttttaaaa gatatccctt atccacaaat catagaagag cttgattatg aaaagctttt
     1201 aaaagcctat gaagaacttt ttaaaagctt tttaaaagat aatgtagagc ttttagaatc
     1261 tgaccctttt aaagccattt tagaagcttt agcttataga gaaatgataa ttagagcaag
     1321 aattaatgag agtataaaag caacttatct tcattatgca aagggaagtg atttagataa
     1381 tgtagtagct aatggctatt tgatacaaag gcttaaaggg gttaaacccg cagctaaagt
     1441 agagtttgaa ttaaatactt tacttactta tgatgtcatc atcccaaaag gtgcaatttt
     1501 ttcaaatgaa aaagcagacc ttgccacttt aaaagaagaa gtggtgatta aaaaagggca
     1561 aagtaaagca caaggtattt tagaacttga tgaatttatt caaagcaaag aaagtaaaac
     1621 cgagttttta caaaccccac tgccttttgt ggctaagatt aaacaactag aatttttcaa
     1681 aggtggagcc agtgaggaaa gcgatgaagc cttaagagaa agggctgtaa tgagtgtaca
     1741 tcgtttttca accgcaggaa gtgaaaaagg ttatatctat cacgctttaa gcgcaagtgc
     1801 aaaagtagct tccataaaag ctttaaacaa tggagcagga aaagtaagag ttatcattaa
     1861 aagtgaagat gaattaagcg ttgatgtggt taaagagtat ttaagtgcgg atgagcgaag
     1921 acctttaact gatgaagtaa atgtagaatt agctaaaaaa agagagttta tcgtagatgc
     1981 caaacttttg cttttagagc tttctagggc taatgaaata agccagaaga ttcatgcttt
     2041 gcaaaaggac tttgatttaa gtgtggattt agcactggga tttatttata aatgccttca
     2101 tcaggacgga gtttataaaa gcgaaatttt aagcattaaa gaaaaaatca taaatgaaga
     2161 agagcaagaa ttaaaagact tgcccttaga aaatataata atagctgatg atgagtttgc
     2221 aacccttagc ttttcactta gttatgaaaa ggcggtgcta tgaatacact aatactaaac
     2281 caccatccaa aacaaagcaa agccattgat ttaagtgcta aaacaagatt tgaagattta
     2341 aatttagcta gtatcacaaa tctagctcta aattgcgatg aaagattatt gccaatttta
     2401 gccaatgctt atgatgtaag tattgatggt ttaaatgaaa aagaagcaag aaagctaata
     2461 tctaaagcct tgcttttaga cagatacaac ggcacaactt gggctataaa agaagcttta
     2521 agagctgtat ttcctactgc agtggttaaa gagtggttta attatggcgg aaagccttat
     2581 ttttttaaag ttaaagtaag cacaactaat gttagctttg atgaaagaac gcttaatact
     2641 ttagaaagac taatttatga ttttaaaaat gttagaagcg ttttagaagc aattgaaata
     2701 gagattaaaa gtaaaaatga tagttttaat gctaatgcac aaataagtgg agaaactata
     2761 gaaatcttac cttttcaaac cactttttta gaaaatgaaa ttaaaagtac taaaaatgta
     2821 tttggaattt ttatgtgtga aataacaaga actaatattg attttaaagg agtgtattaa
     2881 tggcaaaaag tgaatactat accatactaa caaaaattgg cattgctaaa tttattgccg
     2941 caagagcaag tggaaatggt atcaatttaa aaagctttaa attaagttca aaagttattt
     3001 tgcccagtga agaaatgcaa agcttagaag agattgtata tgaagctaat attagtagta
     3061 aaagcgtgga tgaaagcaat ccaaactatg tgaatttaat gtgtcatgtg ccaagcgatg
     3121 tgggcgggtt tgaagttaat gcagtaggcg tttatgatga agcaggagat ttgcttgcag
     3181 ttggaaatgt cccacgcact tataaaccta tcttaaaaga aggcagcgct aaagagctta
     3241 tgataaaaat tgtcatggag ctttctaatg cagaggaagt tattttaaaa ctagatccta
     3301 gtgtgattat ggcaagtcgt gattatgtgg atgctattaa agtggaactt aatcttaaaa
     3361 ttgatgcttt aacgcaaaaa tatgatgcag agtttaaaaa agtatgggat gagtttgcta
     3421 aatatctttt agaaaataaa tttaatacag aaattgccaa atatgttact ttagctacta
     3481 atcaaaccat tacaggagcc aaagacttta ccaaactacc tacaagctct ataaaagcta
     3541 caaatgacaa tcaatttgta aatttagcta ccttaaaaga aaatcaactc aatttaaaag
     3601 atccagaact tttagcattg atagggttta atacctatct tgatggaact tctttactta
     3661 aatctcattc tatgtctaat aatgtgatat acacaaatac aacaggagga aaaacaccta
     3721 ttgcaataaa aattcaacaa atcgataatg tagtcaatca agctagtatt agtatataca
     3781 taaataattc tttaataaaa aaaataaatg ctatacaata cactaattca acaggtaaat
     3841 atattccatt aacatattat gaaggtattt tgaaaccaaa tgacacatat aaaatagaat
     3901 tgtttaatat tgttatggat aagccaaata ttgaggcaac aattttaaat gtcagataag
     3961 gagaaaaaat gaaatatttt atagacaaaa acgataataa tcaaatttat gcttatgagg
     4021 atgaagtgag cgatgagcaa attaaaacag gcttaacacc tattagcgaa gaagagttta
     4081 atgctttaac aagtcctcct aaaagtgaag aagagctttt aaacgaggca aaagagttaa
     4141 aaatcaacga gattaatgca aaaaaagaaa atattctaaa tggtggattt tcttttaaag
     4201 gtaaaatcta tcaaagttct aatgaagatc agttaagaat taatggagca gtaaccaatg
     4261 ctcttgttaa tcctaattta attccttata ttgattggat tgcgcttgat aattcaacta
     4321 caagatttag cgtagatgag tttaaactct ttgcaagtag catggcttat tttgtgcaag
     4381 agactatttt taaagcaagt gctttaaaag aaaaagctag aaatgcacaa agcaaagaag
     4441 aacttgattt aattgtttgg gagagtgaaa aatgactaaa gcagaattaa aaagggtttg
     4501 tgtaaagccc tatgataaag acagatttga agtaattagt gattatgctt tttctttgcc
     4561 aaattataaa ggcattgtac cacaaggctt taaaacagat ggtgcaagta tcccacgcct
     4621 tttttggtct ttgtttccac cttttaaaag tgagtatttt agcgcttgtg tggtgcatga
     4681 ttttttatgc gaaaaagcaa attcaagaac tgattatagg acagctgatt tagcattaaa
     4741 agaagctatg actttgcttg gatgttcaag acttaaaatc tttgtatttt atcattcttg
     4801 taatctttat catgcaataa aatgcttgat aaaaggaaaa taaaaaaagg tgagctaccc
     4861 acgcagtggg acgggggctt tagcaaaagc gactttgggc ggattttatt cgcacaaagt
     4921 gaaagcataa aaaggagtta aaatgaaaga ttatggaatt tcttttattc cagatattaa
     4981 tcaaggctca aaagagccaa gtgaacctat agttagtgat aagcttaatg ctcaaaaagt
     5041 taatgagctt atagataaaa aactaaagct ttttaaagaa gagcttgtta ataaagagga
     5101 gcttaaaagt ctcattgagg aaattttaca agatcaaaat ttccaaaata caaacataaa
     5161 aatatcaaaa actccaccta actacaatac acaagctaaa gtaggagaaa tttgggcggt
     5221 tttagaaagt aaaaagcaat tatttatttg cactgctaat gataatgatt ttacaagctg
     5281 ggttgattta ctaggagatg gtagtaatga tattatccct aaagaaaaaa tcattatcac
     5341 atttgataac actaccacag gtggacaata tgggggttgt atgagtgatt taagacttgg
     5401 ttttgaaaat ggttttgcta ctccaaataa agttcaagat gagtatgaaa acgcaaaatt
     5461 cactatgact aaagatggta atggtcttaa tagaagcgat tttactatag attctaatcc
     5521 tattgcagga gaaaaccaaa ttttaggaac gattaagaca agtggtattt atcaagaaac
     5581 ctatcacaaa atcgcccatg tgtttaaaaa atataatggt ggttctgatg agtgttgctt
     5641 atggtctagt tcaggaacga gagaggtaag catagaactt gaaaatacat caatgcctaa
     5701 taagcttttt gctagaggta atggatatta tggtcaaaca gaaattacca atgtaagagt
     5761 aaaaaaatcc atttttatag gtgagcaaga aattcaaagt gaagatttta atgttgaaaa
     5821 gttagaagct agttctgata cttatggaga ttatgtcttt ttatttgaaa tttctaaaca
     5881 agatcaaatt gttatgaaaa aagagcttaa tttaaatcct aaaaaaacaa aaaatacaaa
     5941 aaatgtaaag aaataaggag tgaataatgg cagcaaa
//
LOCUS       DARGEM010000093         5962 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.093, whole genome shotgun sequence.
ACCESSION   DARGEM010000093 DARGEM010000000
VERSION     DARGEM010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.093"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            2..655
                     /gene="flgA"
                     /locus_tag="SFZ78_001369"
     CDS             2..655
                     /gene="flgA"
                     /locus_tag="SFZ78_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG8212226.1"
                     /translation="MFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQIDLKI
                     TSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLKSER
                     AIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKTTAL
                     IRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMIIQ"
     gene            652..1215
                     /locus_tag="SFZ78_001370"
     CDS             652..1215
                     /locus_tag="SFZ78_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG8212227.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            1255..1731
                     /gene="coaD"
                     /locus_tag="SFZ78_001371"
     CDS             1255..1731
                     /gene="coaD"
                     /locus_tag="SFZ78_001371"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG8212228.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            1722..2300
                     /locus_tag="SFZ78_001372"
     CDS             1722..2300
                     /locus_tag="SFZ78_001372"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG8212229.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            2297..3523
                     /locus_tag="SFZ78_001373"
     CDS             2297..3523
                     /locus_tag="SFZ78_001373"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG8212230.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINIPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCLQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            3520..5355
                     /gene="speA"
                     /locus_tag="SFZ78_001374"
     CDS             3520..5355
                     /gene="speA"
                     /locus_tag="SFZ78_001374"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG8212231.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            5356..>5962
                     /gene="cysE"
                     /locus_tag="SFZ78_001375"
     CDS             5356..>5962
                     /gene="cysE"
                     /locus_tag="SFZ78_001375"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG8212232.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELEN"
BASE COUNT         2209 a          847 c         1054 g         1852 t
ORIGIN      
        1 tattttttta acttttttta ttgtgataaa ttatatccaa gcagctagtt tagaagaaat
       61 caaaacagca ctagctaaag aatttagaaa taattttcct aaaattataa tttctcaaat
      121 tgatttaaaa ataacatcat tgcctaaaga ttttgatcaa tatgaatttc taagaatcgc
      181 taatgggcgt tttaatcaag cacaaggctt tttaagggct gaatttaaaa ctccgcaaaa
      241 tatacaaaaa aatgtatttt ttagatattt cattcaagca aatttagaag ttttaaaaag
      301 cgaacgcgct ataaaaagag gagataaact tggagctttt gactataaaa gcgtattgat
      361 tgattttgat aaagttcctt taaatgcctt aaccttagat gatgtagata atcttgtagc
      421 taaaagcaat attaacaaaa acgccatttt aagagcaaat atgtttaaaa ccacagcttt
      481 aatacgccga aatgatccta taatcgggat tttaagcgaa gcaaatgttg atgttttaat
      541 cgaacttgtg gctttgcaaa gtgcaaatat gggcgaaagg attcgtgcaa aaaacaaaga
      601 aggtaaagtt atgcaaggca tcgtagtggg taaaaatagg atgattatac aatgaaggtt
      661 ttattaggaa tttctggttc aagcagtgtc aatttaggct taaaattatt aaaaaatcta
      721 gaaaaccaat gcgaacttta ttgcatttta acccaaggtg caaaacttag cttcaaaact
      781 gaaaatcaag caaatttaga agaaatttgt caagaaaatt ttaaatacac ttatttttta
      841 gatgataaaa atttaagtct aagtgtagca agtggatctt ttggaataga aaaaaccatc
      901 attgctcctt gttcaatttc aagtttagca aaaattcacg ctggttttgc agacactctt
      961 ttaatgcgtg ctgcagcagt ggccttaaaa gaaagaaaaa aacttatctt aggcgtacgc
     1021 gaaatgcctt tttctacttt aaatttagaa catatgttaa aacttagcca aatgggagtt
     1081 attatcgccc ctcctattat cgcaagctat tctaaagcaa acaatctaga gcaaatggaa
     1141 aattttatcg caggtaaatg gttagatctt ttagaaataa aacacaattt atatgaaaaa
     1201 tggcaaaatt tttagtttaa atttgttata tttttaaaaa aaattggagc aaaaatgact
     1261 tgtttatatc ctgggacttt tgatcctatt accaacgggc atttagatgt tataaaacgg
     1321 gctttaaaaa tttttgatga agtcatcgtt gccatagcaa aaagtgaaca taaaaaacct
     1381 tgctatgatt tagaaaaacg caaagaacta gccctgctcg caacacaaaa tttaaaaaat
     1441 gttaaaatca ttgcttttga taatttactt gtagatttag ccaaagaatt aaaagttaat
     1501 actataatcc gtggacttag agcagtgagt gattttgaat acgaattgca aattggctat
     1561 gcaaatcacg cactttggga agatatggaa accatttatc ttatgccaag tctaaaacat
     1621 gcttttattt caagttctat tgtgcgttct atagtagcac atgggggtga tgtaagttct
     1681 cttgttccaa aagaaattct acctttttta aaggatcaat cttgtatgta gtttttgaag
     1741 gtattgactg cgtaggaaaa agtacgcaaa tttcactttt aaaagaaatt tacaaagatg
     1801 ccattttcac actcgaacct ggcggaacag aacttggaaa acatttaaga gaaattttac
     1861 ttaataaaac tcatcctatt aacaaaagag ctgaactctt gcttttttta gctgatcgtg
     1921 ctcaacattt tgaagaaatc ttaaaaacca atcaaaacaa actcattatt agcgatagaa
     1981 gttttatttc aggcatggct tatgccaaag attttgaaaa cgatttgctt tttgctttaa
     2041 atagttttgc tttagaaaat ttttttccac aaaaaattat ctttttaaaa ggagatgcaa
     2101 accttatcca agaacgcctc agtcaaaaag aactagatag tatagaaaaa cgtggcattg
     2161 agtatttttt aagtgtacag gacaaactcg aaaaagtgct tcatttttta aaagaaaaaa
     2221 tttctgtaga aattttaaca cttgacgcaa aagaaagtaa agaaaaatta caccaacaaa
     2281 taaaggaatt tttacaatga ttaacgcttt aaaaggaatg aaagatttat tagataaaga
     2341 tgcatattat tatgaaaaag tgattaaaac ctgcgaagaa gtagctaaaa actatggctt
     2401 tacttttatc aatataccgc atttagaact ttgcaccctt tttaaaagaa gcgtaggaga
     2461 aagttctgat atagtaggta aagaaatgta tgaatttatc gataaaggcg aaaatcatgt
     2521 ttgcatgcgt cctgaaggaa ctgctggggt ggtgcgtgcc tatatagaaa aaaaactcga
     2581 taaaaacact agtgtgaaaa gatggtttta tcatggttct atgtttcgtt atgaaagacc
     2641 tcaaaagggt cgcttaagag aatttcatca atttggagtt gaaagccttg gcatacctaa
     2701 tgtttatgaa gatgcaagca ttattttaat gctagtagaa attttctcac gccttggtat
     2761 tgattttaaa cttcaactta attctttagg ctgcttacaa tgcttgccaa aataccgcga
     2821 taggctcgtt gaattcttag attccaaaga aggtttttgt gaagattgtt tgcgtagaaa
     2881 aaatttaaat cctattcgtg tcttagattg taaaaatgag cattgtcaaa atttgcttga
     2941 aaatgctccg cttttgatca ataatttatg cacctcttgc caaaaagact ttgaaacact
     3001 gcaacaaatt ttaaaggata atggagttaa atttgagtta gattcaaaac ttgtgagggg
     3061 tttggattat tattctaaaa cggcttttga atttataagc gatgaaatag gagcaaaggc
     3121 tgctatcgca ggtggaggac gctacgatag acttatagag tatttaggtg gaaaaagtgg
     3181 ctatggtata ggttttgcca tgggtataga aagaattata actattttag aacaaaaaga
     3241 agaaaagatt caaagagaag gaatttatct ttgtgctatg gatgaaattt atatccaaaa
     3301 acttttgcat atcgctacaa atttaagaaa agaatataaa gtacttttaa gctatgaagc
     3361 aagaaaacta gccaaacatc ttgaaaacgc ggataaaaat aatactgaaa tttttctttg
     3421 catgggagaa aatgaagcac aaaatgaaag tttgttttat aaaaatttag caaaaaaaga
     3481 agaaaaaatg attaaaattt cagacttaaa gaaggtttta tgatggatta tggtattgat
     3541 atttggggaa atgaaaattt cattatcaaa aatggtaaag tttgtatcaa ttacgagaaa
     3601 aaacctgcta ttattgatat agttaaagaa ttaagagatg atggatacaa ggggccttta
     3661 cttttaagat ttcctcatct tatccaaaaa caaattgaaa atatttacgg aaatttcaat
     3721 aaagcaagaa aggaatttgg ctataaagga ggatttaacg ctgtttatcc tttaaaggtc
     3781 aatcaatacc ctggttttgt aaaaaatctt gtaaaacttg gaaaagacta taactatgga
     3841 cttgaagcag gttctaaggc agagctttta ctcgctatgg cttataataa cgaaggcgca
     3901 cctattaccg taaatggctt taaagataga gaacttatca acataggctt tatcgcagct
     3961 gaaatgggac ataatatcac tttaaccata gaaggactta atgaacttga agctatcata
     4021 gacatagcta aagaacgctt taaacctaaa ccaaatatag gcttacgtgt acgtttgcat
     4081 tctgctggag ttggaatttg ggcaaaaagc ggtgggatta attctaaatt tggacttaca
     4141 tccactgaac tcatagaagc ggtaaattta ctcaaagaaa acaaactttt agaacaattt
     4201 accatgattc actttcatct aggctcacaa attaccgaaa ttcacccctt gaaaaaagcc
     4261 ttaaatgaag caggaaatat ctatacagaa cttagaaaaa tgggagctaa aaatctaaaa
     4321 gctatcaatc ttggcggtgg tttagctgtg gaatactcac aatttaaaaa tgaaaaaagt
     4381 agaaattaca ccctaagaga atacgctaac gatgtagttt ttatcctaaa aaacatagcc
     4441 gaacaaaaaa aagatttaga gcctgatatt ttcatagaaa gtgggcgttt tgtagcagct
     4501 aatcacgctg ttttaatcgc tcctgtatta gaactttttt ctcaagaata cgcagaaaac
     4561 aaactcatac ttaaaaaaca aaatccaaaa cttatcgatg agctttatga tctttataaa
     4621 agtataaaac cttccaatgc tttagaatac ttgcacgata gcatagatca tttagagagt
     4681 attttaactc tttttgattt gggctatgtg gatttacaag atcgttccaa tgctgaaatt
     4741 ttaactcatt tgattacaaa aaaagccatc ttgcttttag gcgataagca aaatcctgcg
     4801 gatttacttg ccatacaaga tgaagtgcaa gaaaggtatt tggtaaattt ttcgctcttt
     4861 caaagcatgc ctgatttttg gggtttagaa cagaatttcc ccatcatgcc acttgatcgc
     4921 ttagatgaag aaccgacacg aagtgcaagt atttgggata taacctgcga tagcgatgga
     4981 gaaatttcat actctaaaga taaaccttta tttttgcacg atgtagatgt agaaaaagaa
     5041 aattattttc tagggttttt tcttgtaggt gcctatcaag aagtacttgg aatgaaacac
     5101 aatcttttta ctcatcctac tgaagctatt ataagcatca atgaaaaagg ctatgaagtc
     5161 gaggggatta tagaagcgca atccatactt gataccttag aagatttaga ctatgatata
     5221 cacgctatca tggatatact taatgaacgc ataagtaatt ctaagcttgt aaatgataag
     5281 caaaaaaagc atattttagg cgaactttat cttttcttaa atgataatgg ttatttaaaa
     5341 agcataggag tttagatgaa tttttggggt attataaaag aagatttttc tcagccaaag
     5401 gcacaagatc cagcttttaa ttcttgtata gaactttttt ttaattaccc tggagtatgg
     5461 gctgtagtaa attaccgctt tgcacatttt ttttacataa gaaattttaa acgcattgct
     5521 agaatgatta gcggaatttc acaattctta actggggtag atttgcaccc tggagcagaa
     5581 cttggaaggc gtatttttat agatcatgcc aatggagtgg ttataggtca aacagcaatt
     5641 atagaagatg atgttttaat ttatcaaggc gttactttag gtggaacaag ccttgaaaaa
     5701 ggtactaaac gccatccaac cataaaaaaa ggagtgatca taggctcagg cgcaaaagtg
     5761 cttggcaata tcaccatagg agaaaatgcc aaaataggct caaatgctgt agtggttaaa
     5821 gatgtaggtg caaatttaac tgccgttgga attcctgctt atattatcga agagcgtaaa
     5881 aataaaaaca ttagagccat agatgcaaat tgcgatgaca aactagaaaa gttagaaaag
     5941 aaaattttag aacttgaaaa tc
//
LOCUS       DARGEM010000094         5936 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.094, whole genome shotgun sequence.
ACCESSION   DARGEM010000094 DARGEM010000000
VERSION     DARGEM010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5936
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.094"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(37..963)
                     /locus_tag="SFZ78_001376"
     CDS             complement(37..963)
                     /locus_tag="SFZ78_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG8212233.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFAYMIGEHGDSQFAALSNASILGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKNGVEK
                     VFELKFNEKEKTKLENSKQQIKNAIQSVKDKI"
     gene            1030..1806
                     /locus_tag="SFZ78_001377"
     CDS             1030..1806
                     /locus_tag="SFZ78_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG8212234.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KVKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            1803..2297
                     /locus_tag="SFZ78_001378"
     CDS             1803..2297
                     /locus_tag="SFZ78_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG8212235.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            2368..2631
                     /locus_tag="SFZ78_001379"
     CDS             2368..2631
                     /locus_tag="SFZ78_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG8212236.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            2707..3657
                     /gene="czcD"
                     /locus_tag="SFZ78_001380"
     CDS             2707..3657
                     /gene="czcD"
                     /locus_tag="SFZ78_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG8212237.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIMGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            3647..3841
                     /locus_tag="SFZ78_001381"
     CDS             3647..3841
                     /locus_tag="SFZ78_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG8212238.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVECL"
     gene            3841..>5936
                     /gene="copA"
                     /locus_tag="SFZ78_001382"
     CDS             3841..>5936
                     /gene="copA"
                     /locus_tag="SFZ78_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG8212239.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLKDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAVLAM
                     CFSSITVVLNSLRLKR"
BASE COUNT         1915 a          750 c         1041 g         2230 t
ORIGIN      
        1 aatttatatc aaaatcaaaa agccttttaa aaaggcttaa attttatctt ttacgctttg
       61 tatagcgttt ttgatttgtt gttttgaatt ttctaatttt gttttttctt tttcattgaa
      121 ttttaattca aaaacctttt ctacaccatt ttttcctatg atagcgggca ttgaaaaagc
      181 tatatcatca aaaaccacac ttacaggatg caaacttttt ctatcttcta ggatagcttt
      241 ggctaaattt gcacaagaag ttcctatgcc aaattctgtc cttcctttgc gttcatagat
      301 gaaatatccc tcgctaatca cggctttttc gagttcttgt atgtctaaat ctttgcctaa
      361 tctttgcttg taaaaatcta ataaattttg tcctaaaatg cttgcattag aaagtgctgc
      421 aaactgagaa tctccatgtt cgccaatcat ataagcaaaa atatcttttg aatttatgtt
      481 taaatctttg gctaaaaatt tcttaagtct tgaactatct aaatttgttc cactgccaaa
      541 aacatgattt ttaggtaatt ggcttaatac ttgagtgtag taagttatgg tgtcatttgg
      601 atttgttgcg acaatgtatt tgcctttaaa attagcattt tttaaggtta agacaatgtc
      661 tttaagttcg aggatattgt tttgaagttc tactaagcga ctaggtaatt cttttaagct
      721 ttcttttcta aaagctaaaa tgataatatc gcaagaagct aaattttcta aatttggcac
      781 atgaaaaatt tttgtataag aaaaatgaat ggctgacata tcttccaaat ctcttgcatg
      841 agctagagct aaatcttgtt ttatatcata taagtaaagt tctgaacaaa ttccttgagt
      901 aactatgcta taagcactag cagctcctac ataacctaaa ccaactatac cgatttttgc
      961 cattttttct ccttatttat tttaaaattt gctataatta taacaaattc aatcaaagat
     1021 tattaaaata tggaaaaacc tgatatacaa agattaacta attttttaat cgtatatact
     1081 aaaactttac taggtgctgg aacttataca gctagggtgg caaaatgcgt aggaagaata
     1141 gctgaggttt atggctatga gataaatatc aatttctttt ttcatcatat tactttaaat
     1201 gttgtggata tggatgataa ctccattcaa agaacttatg ttatacctaa tcatcatgcc
     1261 catgttaatt ttaagcttat ttttgattta agtgctttaa gctgggctat atatgatcac
     1321 aaatacgatc ttgaaaaagt aaaagttgtt tttgggcaaa tttctcaaca aaaaaagcat
     1381 tcttatttgc ttaatctttt atttgtttct atggcaaatt cagctttttg taggcttttt
     1441 ggtggtgatt ttggtgctgg aaatttagta ttttttgcaa cttttgtggg attgttgtta
     1501 agatatattt taactaaagc aaagattgat ttaagaattc aatacatcct ttgttctttt
     1561 atctcatcgt ggtttgtatt ttttggactg gatatgggat ataccaatac ttctgatgtg
     1621 gctttgggtt ctagtatctt gtatcttata ccaggggtat tttttataaa ttctgtgatt
     1681 gatatattaa aagatcatat tttaatgggg cttagccgta ttatcagcgt ggctattttg
     1741 atttgttgta tagcacttgg aatttacatg acgcttagta tttcggattt tgggatttta
     1801 agatgattga atttatttta agagatatgt tttttgctgc tgtggcggga tttgggtttg
     1861 cttatgcttg taatccacct ttaaaaaccc ttattttatc tgctctttta gcggcaattg
     1921 cacatgggct tcgttttacc ttggtggaat attttcattt tcaaacttta gcaattgcaa
     1981 cttttgttgc ttcattttgc ataggatgtt taggaattgc tttagcaaaa attatcaaaa
     2041 cccctgctga aattatcgct ttccctgctc ttattcctat gatacctgga atttatgctt
     2101 ataaagcaat tttgtatctt atttctttta tacgcagtga tgatttgaag gctaagtctg
     2161 aatttttggt tcaatttttt gattattttt ttacaactgt ttctgtgact ttggctctag
     2221 ctataggagt gagtgttact ttgcttatat tttttgaaca aagttttatg atgactagac
     2281 atgcaaaaaa acattaaaac ttgttgtaaa tttgtttaat atttcttttt ataattttaa
     2341 atcaaaaatt taaaaaaaag gtattgtatg ttatgtccag tttgtaatgt agatttggtt
     2401 atgagtgata ggagtggagt tgagattgat tattgtccaa agtgtcgtgg cgtttggctt
     2461 gatcgtggag aacttgacaa aatcatagaa cgcagtgtcc ctaatacagc aaattttaac
     2521 caagctccaa gacaagagtc aagatataat gactcagctt atcatcagca caatgactat
     2581 tataaaaaga aaaagaaaga aagttggcta ggcgagcttt ttgactttta atttttataa
     2641 aaataacaaa tatttatatc ctttttagct taatatctta aaatgtcaag caaaaaagga
     2701 tataagatgt ataaattttt atcacacgag cctttagcta acaaatcttg tcatcataat
     2761 cacgaagaac attctcatga acatcatcat tcccatgctg atgcaaggag tgtggataaa
     2821 aagattttaa aaatttctct tttaatgact ttttctatga tgcttgtgca atttatttat
     2881 tcaatccttt caaattcttt agcactttta agcgatactt tgcatatgtt ttctgatgtt
     2941 tttgccttag ctcttagttt tttagccatt atagctgtag aaaaatggca agatcatcaa
     3001 aagacctttg ggtattttcg tcttgaagtt ttagtggctt ttatcaatgc tctaaccatt
     3061 attttatcgg ctttatttat catttatgaa gctatagaaa aatttattaa tccaaaagaa
     3121 attgacgcta aaaccatgat aattgtagct attttaggct ttttggtaaa tgggattaat
     3181 gctttgatga tgtttaaggg tgcaaattta gaaaatgtca atatgaagtc tgcttttttg
     3241 catatgatga gtgatttatt aggttcttta gcggttatta tgggtgggat cgtggtgtat
     3301 tttagcggta ttgtttatat agatacgatt ttagctattg tattatcaat cttgctttta
     3361 agatgggcga ttatcttgct taaacaaagc gctaatgtct tgcttgaaag ttctcctgtg
     3421 gatatagaaa aagtaagaca agttttgctt ttaaatccta gtgtggatga ggtagtggat
     3481 ttgcatatta ctcaaatcac taataaaatg ctagtagcct ctatgcattt aaaagtaaga
     3541 gtttgcaatc taaaggaatt tgaaaaacta tctcaggatt tatctcataa gttattgcat
     3601 gaatttgaaa tcgggcacat taccatacaa cctataagga gtgaaaatga aatttaaagt
     3661 aaaaaatgtt aattgcatga attgtgtaaa tttgatcaaa aattctcttg aagatgaatt
     3721 tggaaatata gaagtggatt tggagcaaaa aattttaagt ttaaatttag aagaaaatca
     3781 agtatcaaat tttacaaaag aatttcaaga tttaggtttt gagatcgtag agtgtttata
     3841 atggaagaat tgcgtataaa aataggcaaa atgacttgcg ttaattgttc taacgctata
     3901 gaaagagctt gtaaaaaaat tgatggtgtt aaagatgcta gtgtttctta tgtgaattct
     3961 agcggggttt ttttacttaa agatcaagaa aaacgcaagg atatcatcgc aaaaattcaa
     4021 aatttaggct ttgaaatttt agaagatgaa caaagcttga acgcatacaa ggcaaaaaaa
     4081 cacttagaat taagaaaaaa tttgctctta agtatagttt tgagtgtgat tattatgtat
     4141 tttgaaatgt ttgttaaaag ttctttttct caaaatatcc aaatggcttt gagttttttt
     4201 gggatatttt attgtgggag agactttttt tctcatgctt ttttaggact taaaagtaaa
     4261 aatttagata tgaataccct tgtagctttg gggactttga gtgcttttgt gtattctttt
     4321 ttggtgtatt tgcaaatttt caaagaagaa gatttgtatt ttagtggtgc aatgatgatt
     4381 atttcctttg tgcttttagg aaaatatctt gaaagtaagg ctaaatttaa ggcacaagat
     4441 tatcaaagaa ttttagaaaa tatagacaca aaaaagacaa aaattttgct tgaagatgaa
     4501 agtatcaaag aaatttcaag ttcttttgtc aaaagtggcg atgtactttt ggtaaaagaa
     4561 ggagaaagta ttgttgcaga tggagtagtg cttttaggga gtgcagagct tgatatgagt
     4621 tttttaaatg gggagttttt gcctgtttta aaaaaagaag gcgatgaagt tcaagcagga
     4681 gcagtagttt taaatggtgc tttaaggatc aaagcaaaca aaaaggccat ggatagtact
     4741 ttagaacaaa tcaaaaatct agtttttgaa gcaggaagta tcaaaagtcc tttggcaaat
     4801 ttagcagatc aaatttctaa atactttgta gggggtataa tattttttgc ttttttagtt
     4861 tttgtttttt gggtgctaaa agcagattta aatacagctt ttttacactc ttgtgctgtg
     4921 cttttgatct cttgtccttg tgctttaggt cttgcaacgc ctatagcttt ggttgtggca
     4981 agtgcaaatg cggcaaaaaa tttcattctt attaaaaatc ctgctgcttt agaaaaatta
     5041 gccttagtta agtatgcttt ttttgataaa acgggtacat taacaaagga aaatttgagt
     5101 atttttaaac acaatctttc taaagatgat tttgataaat tatgtcaaat tgaaagttta
     5161 agctctcatc ctatagctaa ggctttacat aaagatcatt tttttgattt aaagggtgag
     5221 ggaagagtga ttgtgggttc tggtataaaa tacaaagaag ataatgataa ttatctcgta
     5281 ggcaatgcac agtttttgca cgaaaatgaa attgacacaa aagaaagtga tatctttttt
     5341 gatactttta aagaatatgt tagggtgtat tttgctaaga ataaaaagtg tttaggcggt
     5401 gttttgttaa gcaatgcttt aaaagatgga gccaaagagc ttgtgttaaa tttaaaaaag
     5461 caaaatctta aaacttttat tttaagcggc gatcatgtaa aaaatgtaga aaaaatagcc
     5521 aaagaattac aaatagacga atttcacgct cagcttaaga gtgaagaaaa actacaaatc
     5581 attcaaaaat ttaaaaaaac tctttttgta ggagatggga tcaatgatgc ggcggcttta
     5641 tctgctgcaa gtgtgagtat gagtttttca aaggcaaatg aacttgctaa aaaaacagga
     5701 gattttatct tgataaaaga tgatttatca gcgattttta aatgttttaa acttgctaaa
     5761 aaaacacgcg gtattattaa gctaaatctt ttttgggctt ttatttataa tgtactttgc
     5821 attcctatcg cggcaggatt tatacctttt atctctttaa gtcctcatat agcagtactt
     5881 gcaatgtgtt ttagttctat tactgtagtg cttaattctt taagacttaa aagaat
//
LOCUS       DARGEM010000095         5848 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.095, whole genome shotgun sequence.
ACCESSION   DARGEM010000095 DARGEM010000000
VERSION     DARGEM010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.095"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1200)
                     /locus_tag="SFZ78_001383"
     CDS             complement(<1..1200)
                     /locus_tag="SFZ78_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212240.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFVI
                     GGYGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARISNNKKYSASISFMEEDLLS
                     LSKILLDFGINPQNLDCKNSTKYYELLIQHIITLKSQGKLAQNYQAKFTSTFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGTVLPLLECIIGKDLSRPEFFFSDLNKLVGMFIKTYWTREDERLSYFFTNENYMI
                     RSLLNSSHLTIQASVNKNIILVSYHSLKDPFNTAKDKQTLFLAYKELGYDATLHLIKD
                     ESEIDGRFIKDLNHGMRITDKALFRKELPLMLEKLQKRKSFMQENSISYPCGNKVFTF
                     KDVENQLK"
     gene            1279..1977
                     /gene="pseF"
                     /locus_tag="SFZ78_001384"
     CDS             1279..1977
                     /gene="pseF"
                     /locus_tag="SFZ78_001384"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG8212241.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            1961..2785
                     /gene="pseG"
                     /locus_tag="SFZ78_001385"
     CDS             1961..2785
                     /gene="pseG"
                     /locus_tag="SFZ78_001385"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG8212242.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            2782..3255
                     /gene="pseH"
                     /locus_tag="SFZ78_001386"
     CDS             2782..3255
                     /gene="pseH"
                     /locus_tag="SFZ78_001386"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG8212243.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(3220..3966)
                     /gene="hisF"
                     /locus_tag="SFZ78_001387"
     CDS             complement(3220..3966)
                     /gene="hisF"
                     /locus_tag="SFZ78_001387"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8212244.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(3967..4572)
                     /gene="hisH"
                     /locus_tag="SFZ78_001388"
     CDS             complement(3967..4572)
                     /gene="hisH"
                     /locus_tag="SFZ78_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8212245.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(4569..5705)
                     /gene="pseA"
                     /locus_tag="SFZ78_001389"
     CDS             complement(4569..5705)
                     /gene="pseA"
                     /locus_tag="SFZ78_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEG8212246.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
BASE COUNT         2063 a         1006 c          754 g         2025 t
ORIGIN      
        1 ttttaactga ttttctacat ctttaaaagt aaacacttta tttccacaag gataagagat
       61 ggaattttct tgcatgaaag attttctttt ttgtagtttt tcaagcatta aaggaagttc
      121 ttttctaaat aaggctttat cagtaatcct cataccatga tttaaatctt ttataaatct
      181 tccatcaatc tcactttcgt cttttattaa atgtaaagtg gcgtcatatc ctagctcttt
      241 atacgctaaa aaaagagttt gtttatcttt tgctgtatta aatggatctt ttaaactatg
      301 ataagatact aaaataatat ttttattgac actagcttgt atagttaaat gggaagaatt
      361 taacaaagaa cgaatcatat aattttcatt agtaaaaaaa taagataatc tttcatcttc
      421 tctagtccag tacgttttaa taaacatgcc taccaattta tttaaatcac taaaaaaaaa
      481 ttcgggtcta cttaaatctt ttcctattat acattccaat aatggcaaaa cagttcctga
      541 attatcaatc acgccatcca cataccaagg agctatcttt gctatgagca aggctaagta
      601 tcctccataa gacccccccc cataaatttt tggtaaatct gcaaattttg gaaagcgttt
      661 aactaaatct tttaaagcat tgatatgatc aatagctgcc ataatgccat agttttgata
      721 atctccatta ggtgggataa aagttgaagt aaatttcgct tgataatttt gcgctaattt
      781 tccttgtgat tttaaagtaa taatatgctg aataagcaat tcataatact tggtagaatt
      841 tttacaatca agattctgtg gattaatgcc aaaatctaac aaaatcttag atagacttaa
      901 caaatcctcc tccatgaagc taatagaagc actatacttt ttattatttg atattcttgc
      961 acaaaaacaa tgataaaaaa catgtaccac tacaacatca aaatttttag caatatattc
     1021 cctatcaaaa tctaaaaaag aaatatttgc attagctcca taacctccta tgacaaaaac
     1081 tatggctttg atatcttttt catcatcata gctaatgcgg tattcaagtt tgctagttct
     1141 ttttatattt aattctacat catcacaaga atcaatttca aaggtttggt ttataagcaa
     1201 ttttaagcct tttattgtat tttaaagaca attatactta aattttagta aaataaaaca
     1261 caaaaacaag gcttaactat gaaaaatctt tgcataatcc ctgctcgtgg tggatcaaaa
     1321 agaattccta gaaaaaatat cattgatttt ctaggtaaac ctttaatctc ttatagcata
     1381 gaaaatgctt taaattcagg tatttttgat gaagtggtgc tttcaagcga tgatgaagaa
     1441 atcatagaag tagccttaaa atacggtgca aaagctcctt ttgtgcgtga taaaaattta
     1501 agcgatgatt atgcttcaag cactgctgta gtgcaaaatg ccatagaaat tttacaaagc
     1561 caaaatcaaa tttatgatca tgtctgctgc ctttatgcta ctgctccttt gttaaataaa
     1621 gacattttaa aacaagccta tgaaaaattt atacaaaatc aaagcaagtt tttatttgct
     1681 gctactgagt ttgagtatcc tatacaaagg gcattttatc taaatgaaaa caatcaagtt
     1741 tatatgtttg atgaaaaaca ttataaaagt cgttcacaag atctaacaaa agcttatcat
     1801 gatgcaggag ctttttattt tggtacaagc aaagcttggc ttgaggaaga ttttatattt
     1861 aaacctcatt ctagcgtgtt tgtattgcca agaaatttag tttgcgatat agacaccata
     1921 caagatttgg aatttgcaaa aatactttat aaggtaaatc atgaaagtgc tttttagaag
     1981 cgatagctcc agtcaaatag gctttggaca cattaaacgt gatctagtct tagctaaaca
     2041 atatagcgat gtaagttttg cttgtttgcc tttagaaggc tctttgatcg atgaaattcc
     2101 ttatcctgtt tatgagcttg atagtgaaag catttacgaa cttatcaatc tcatcaaaga
     2161 agaaaaattt gaacttctta tcattgatca ctatggcatc agcgtagatg atgaaaaact
     2221 gatcaagctt gaaacagggg tgaaaattct aagctttgat gatgaaataa agcctcatca
     2281 ttgtgatatt ttactcaatg tcaatgccta tgcaaaagca agtgattatg aaggtttagt
     2341 gccttttaaa tgcgaagtaa gatgtggttt ttcttatgct ttaatcaggg aagaatttta
     2401 tcaagaggcc aaagaaaata gagaaaaaaa atatgatttt ttcatttgca tgggtggaac
     2461 tgatataaaa aacctttctt tacaaattgc tagcgaatta cctaaaacaa aaatcatcag
     2521 cattgcaacc agctcttcta atcctaatct taaaaaattg caaaaatttg caaaattaca
     2581 taacaatatt agattattta tcgatcatga aaatattgca aaattgatga atgaaagcaa
     2641 taaactcatc attagtgcaa gttctttagt caatgaagcc ttgcttttaa aggcaaattt
     2701 caaagctatt tgttatgtta aaaatcaaga atctacagca acttggcttg ctaaaaaagg
     2761 gtatgaagtg gagtataagt attgataaaa cttaaaaatt tcacagaact taattctcaa
     2821 gaaatagagc tgatttttaa atggcgcaat caccccgata tcaatcaatt tatgaaaaca
     2881 aaatatattg attttgaaga acatttaaga tttttaaaaa aattacatca agattctagc
     2941 aaaaaatatt ttttagtttt tcaagatgaa cagattatcg gcgtaattga ttttgtcaat
     3001 atcacaacta aatcttgcga atttggactt tacgcaaaac ctaatttaaa aggcgtagga
     3061 caaattttaa tgaatgaaat tataaaatac gcttttgaaa acttaaaagt aaatactctt
     3121 aaagcttatg ttttcaaaga caatcgcaaa gctttaaaat tatatcaaca aaatcatttt
     3181 actatttatg atgaagataa agatttttac catatttgcc taaagcaatc tgactgcaaa
     3241 gccttgccta gctaattctt cttttacatc tttaggggta tacttagaaa aatgaaaaat
     3301 ataagcaccc gctaaagcat cagcacctaa atttaaagcc tcaactccat cacttggatt
     3361 gctaagtcct ccattgataa taagaggaat tttaagttta ttttgaaaga tctttaaaag
     3421 ttctaaatca taaccctttg cccttccttc aaaatccaca gaagttaaaa gaagctctcc
     3481 agctcctttt ttttcatatt ctaaagcaag ttctaaagga cttttttcaa gtaaatttcc
     3541 cctgtcataa acacaaaatt gccctccttt tcttttaaca tctatagaac aaactataca
     3601 ttgagaacca aaacgattag ccgctttact tataaaatcc atatcttcta aggccttaga
     3661 attgatagaa attttatccg cacctaaatt taaaatcttt tgtatatctt caagggtttt
     3721 tatcccgcca cctatagtta aaggcataaa acattcttta gcaagatctt ctatactttc
     3781 aaaatctatt tctccacttt ttgaagcatc tatatctaag ataataagct catcaacatt
     3841 gcgtgcatta taaattctca ttgttgaagt taaatgccct atagtgcgaa aatctttaaa
     3901 ttctatactt ttaacaagtt gtccgttttt taacaaaaca caagggataa ttctagtttt
     3961 taacatttaa agccttataa aattttctaa aagttttaag cctaaatttt gacttttttc
     4021 ggggtgaaat tgtgtagcaa aaatatgatc tttttgtaaa gatgcaacaa atttatgtcc
     4081 gtattgtgct ttagcactta caaactcatc tttgcatttc acataaaaag aatgcacaaa
     4141 ataaaaatca ctcttattat ctatgccttg atacaaagga acttgtttta aaatttcaag
     4201 ctcattccaa cccatatgtg ggatttttaa atttaaatcc tcttcaaatt tgactacttc
     4261 accttctata aaaccaagtc cttcgcaaac tccaccttca tagccccttt ctaaaaaaag
     4321 ctgcattccc aaacaaatgc ctaaaatagg ttttttttgt actaaaactt gctcttttaa
     4381 agcttctata aaaccaaatt cttttaaatt tttcatcgct tctttaaaag atcccactcc
     4441 aggtaaaagc aatttatctg ctttttgcaa atcttttgga tttttagcta tgaaatttat
     4501 agctcctatt ttttcaaaag ccttagcaac agagtttaaa tttcccgcct tgtaatcaat
     4561 gagcgctatc attttaaaac acactcgtct tttcttacca aagaaccatc ataatctctt
     4621 ataaatttac cattttcatc acgtttaaaa atttttttat tggtaaaaga atctactatt
     4681 ttttgaaatt cttcctcgct aaaaccactg aattcaaggt attttttaat agccttttta
     4741 gggggcttgc catcgtattt ttgtaccaaa cgcacccctt cttcacggct gatataacct
     4801 aaacgaatat ccaaacaagc attatccgtt gctctaccaa agccgtattt gcagtatttt
     4861 aaataatcat gcacatgatt agaataacaa tctaaatttt caaaattttc ataagtagtc
     4921 tcaacaggat gatctagagt taaaaaacca tattttttag aaatttcaag aattttttta
     4981 taatcccatt taaaataata ccctaaaaat agcccagtaa cccctactct ttgaagttct
     5041 tcatcacttg gataagtata taaaaacaaa tctttttcag tgataccatt taccccaagc
     5101 atatcagaag cacgatttcc taaaagcccg ccaaattctt caagccactc tctgcctaaa
     5161 atatttttat ttttactact cgcaggaccg ccatactcta tctgcggact ttctccccag
     5221 atgatcaaag gcactccaaa atttaccgct atgcgtggaa cagaagtaaa aattcccaaa
     5281 tggttttgcc actcattatc ccctgttctt ataaaagctt cacgggcaag tttttgataa
     5341 acttttggat cacgcttgat atggatcaaa tccacgccaa gatgatttaa attgtctaaa
     5401 tttttgcgcc ctattttcgt aggtacgcta ggctcaaaac acacacacaa aggattaagt
     5461 ccaagttcaa gcattttaac cacttgaaaa gtagaatctt ttccgccact tactccgata
     5521 acacaatcat aaacaggatg ttttttgtat ttttttataa gctcaaaaaa ttctttttct
     5581 ctttcttgcc aattaatatt ttgattttta gcttcttgag aacgacaagc atcacaaaca
     5641 ccttcttcat caaaatgtaa atcgggctta gtatctggca tcacacattt tttacaaaat
     5701 ttcataaatt tcctttaatt agtcttaaat atatatcgtt ataattaaat tttattttat
     5761 gattttatat atttatatta tataaaaatt aaaaaatgaa tgaattctat aatttaaatc
     5821 catatggcat tttttgaatg aaaccaag
//
LOCUS       DARGEM010000096         5842 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.096, whole genome shotgun sequence.
ACCESSION   DARGEM010000096 DARGEM010000000
VERSION     DARGEM010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.096"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            15..464
                     /locus_tag="SFZ78_001390"
     CDS             15..464
                     /locus_tag="SFZ78_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG8212247.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            529..1566
                     /locus_tag="SFZ78_001391"
     CDS             529..1566
                     /locus_tag="SFZ78_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8212248.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKVSEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1563..2294)
                     /locus_tag="SFZ78_001392"
     CDS             complement(1563..2294)
                     /locus_tag="SFZ78_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG8212249.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2269..3018)
                     /locus_tag="SFZ78_001393"
     CDS             complement(2269..3018)
                     /locus_tag="SFZ78_001393"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG8212250.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(3015..3620)
                     /locus_tag="SFZ78_001394"
     CDS             complement(3015..3620)
                     /locus_tag="SFZ78_001394"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG8212251.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            3681..4670
                     /locus_tag="SFZ78_001395"
     CDS             3681..4670
                     /locus_tag="SFZ78_001395"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG8212252.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            4881..5222
                     /locus_tag="SFZ78_001396"
     CDS             4881..5222
                     /locus_tag="SFZ78_001396"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212253.1"
                     /translation="MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASW
                     ILFFIVLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFN
                     QDNILWLLLYF"
     gene            5240..5593
                     /locus_tag="SFZ78_001397"
                     /pseudo
     CDS             5240..5593
                     /locus_tag="SFZ78_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1942 a          775 c          912 g         2213 t
ORIGIN      
        1 aaaaggagtc aatcatgtca gttacaaaac aattattaca aatgcaagca gatgctcatc
       61 atctatgggt taaatttcat aattatcact ggaatgtaaa aggtttgcaa tttttttcta
      121 tacacgagta cacagaaaaa gcttatgaag aaatggcaga actttttgat agttgtgctg
      181 aaagagtttt acaacttggc gaaaaagcta tcacttgcca aaaagtttta atggaaaatg
      241 caaaaagtcc aaaagttgca aaagattgct ttactccgct tgaagtcata gaactgatca
      301 aacaagatta tgaatatctt ttagcagaat ttaaaaaact caatgaagca gcagaaaaag
      361 aaagtgatac cacaacagct gcttttgcgc aagaaaatat tgcaaaatat gaaaaaagtc
      421 tttggatgat aggtgctact ttacagggtg cttgcaaaat gtaatttaag gggctttatg
      481 ccccaattat acaaactagg ttataatatc cttttttaaa ggataaaatt gaaagtactt
      541 aatttttttt atgaaaacca ccctaaattt gaagtaagtt atgaaagaaa aaatcaaatt
      601 tcaaaaccaa atattattat aaaaggccca cgattttgtg gtaaaaaaac acttattttt
      661 aattttttat ctcaatttaa agtaagtgaa attttgtttt tagatttata tgatacacgc
      721 tttgaaaaac aaagtttaga aagacttgct gattttctga atgaaaattt acaaattaaa
      781 attctttgcc tttataattt ggattttatc cctaatttag aaaaaattaa aattcccatc
      841 atcttaagta caaatataaa agatttaaat ataaatgggt ttgaagaact tgaacttgat
      901 tattttgatt ttgaagaatt tattagtgta agtaagaaaa atttacctat aaataattta
      961 gtaggtcttt ttttgcaaag tggacgcagt aaatttggag aaaaaaacat acttctaaga
     1021 caaagcttta ctcttttaga attagaaatt ttaaagtatt tagctttaaa tttgggtcag
     1081 caaatcagta tttctaagat atttatagaa ctcaaaaaaa gattaaaaac ttcaaaagat
     1141 agtgtttatc aggctataaa aaaattagaa aatacttatg tgatctatac tttaaaacat
     1201 gatgaaaaaa aacttcaaaa gatttatttt aaagattttg gcctaagaaa taatctttgt
     1261 atttcaaagg atttttcaca tttatttgaa aatttagttt taagtgagtt atttaaattt
     1321 aaagaagaat ttttttataa caaatacttt aacttttata gccaaatatc taaaattgct
     1381 tatatttcaa gtccaacttt agatattgat ttgattaaat tacgtgctaa gaaaatttta
     1441 ccaaaggctt tagaacttgg aatttttcat gtgattttta tcactctttc aagtgaggat
     1501 agtttttttg aacaaggggt taaatttgaa gtcatatctt ttgataaatt ttcacttgga
     1561 ttttaggtgt tgtttgagtt tgtatcgtat ttttcaaggt tgtatcgttt gatgattttt
     1621 gtaataagat tgatataata tcccttgcgt tcagaataag aatctaaagt tttaatagcc
     1681 tctagtcctg ttatctcttt gccttcgctt gcaaatttag ctcttgcatc gcgaaacttt
     1741 tcataagcaa aatgacgatt taaatttaaa acataagagt aaacactatc ttgcagacta
     1801 tcaaaaatct taattttatg ttttttatct ggatgtctta aatcaggaat taaacctttc
     1861 tcaccccaag tccattctcc aaaaagatta tttgcttctc ttgcgaagcg acttgtacct
     1921 gtagcacttt caactaaagc ttgggctata cccatggatt ttggaatttt ttgaatacgt
     1981 tttttatatt ctgcaaaatc ataaagattt tcaatgcgat atttgttttt tatcgtgata
     2041 agtttttcaa gatttgtttg atttgaagtc ctaaagcctg ttttgtaagc atctttaaaa
     2101 aaggcttcaa taaaagctct ttcttgttca atttttttaa agctttgatc aaacatttca
     2161 ttcattttta taaaaaaaat ttgtcttttt tgatctatat caagtttgta atattcctct
     2221 ccaaagccat tttttagatc atcagcaaaa agtgggatta gaaaaagact aagaaaaatt
     2281 ataattggct tcaaaacaat actttacctt tccttcaaaa aacaattctt catttttata
     2341 tgtaaaccca acctcttcac cacttttagg agttatttta actttatttt gtactttttt
     2401 atttaaaaat gccagataaa aacaagcccc cattcctgtg ccacaagcta aggtttcatc
     2461 ttcaactccg cgttcatagg tacgaacttt taaatgattt tcatctaaaa tttttacaaa
     2521 attaacattg gcattatatt tttgtctcat tttttgacaa agtattgtat caaattcatc
     2581 taaattttga caaaaatgca ctagatgtgg aactccagtg tcgcaaagtt gccaagtttt
     2641 tcctaattct tcaaaagtat tttgcacgct ttttattttg cctaaagata cttcaacttt
     2701 atcttgattt acctttgctt ttattattcc tgcaccggtt aaaaaactca tgttaggatt
     2761 tattttgtta atatgatgtg caaaatgtgc cgcagccctt gagccattgc cacacatagc
     2821 agcccttgag ccatcgttat tataaaattc ccattcaaag tcgtattttt catgaggcaa
     2881 tatcacgata aagccatccc cacctatgcc ctcataacga ttgcaaagtt ctttagctaa
     2941 agcacttcta tcttcttttc tatcagcatt tgttatgaca aaatcattcc cacttgcaca
     3001 atatttataa aatttcacat ttttccttta gaaatttctt gtattacttt aacacattct
     3061 tgcctaaaat cgacataaga attagtattt ttaatgataa aatctgcttt tttaagtttt
     3121 tcttcaatat ctatttgaga atcaagtctc acttttgcag cttctaagct gagcttatct
     3181 ctttgcatga ttcttttaag gcttaattct ttaggtgtgt aaattacaat gactttgcct
     3241 aaattttcat aagcaccgct ttcaaaaaaa agaggaattt ctacaaaaaa agctttattt
     3301 tctttatcta gaatttgcat ttgttctaaa attttagctc gaattttagg atgagtgaaa
     3361 ttttctaagg tttttttagc ttctttgttg ttaaaaacaa tttctccaag gatttttcta
     3421 tcgattttct tttcttttgt gagtaaattt tttaagttaa agggagaaaa aatcttttca
     3481 agttctaaag cattttcatc taaaatttta tgagcaattt tatctgcgct aatgctttta
     3541 aagcctaaag aattcgctat ttctataaaa gtgcttttac cacaagcaat tgaagcggtt
     3601 acaaaaaaag catttttcat cttatgcctt attaaaactt ttttcgttaa aatacctttt
     3661 tagttcttaa aggaaaataa atgaaaattt catatgaaga tgcaggcgta agtatagata
     3721 atggaaatgc ctttgtagag gctataaaac ctttggttaa agaaactttt aatgataatg
     3781 ttgtaggcgg aattggttct tttgctggtg cttttagaat gccaagtggt tttaaaaagc
     3841 ctgtgatttt aggtgcaaca gatggtgttg gtaccaagct tcgcttggca attgatgcta
     3901 aaaaatatga tactataggg caagatttag tagcaatgtg tgtgaatgat ttgatttgta
     3961 attttgctac gcctttgttt ttcctagatt attatgctac agccaagctc gaagtagaag
     4021 tagcaaaggc tgttgtatca ggcattgcca agggatgtaa gatggcaaat tgtgcattaa
     4081 tcggcggaga aactgctgaa atgcctggaa tgtatgcaaa agatgatttt gatcttgcgg
     4141 gttttgcagt gggtatggct gaagaagatg agatcgatag aagtaaattt gttaaaaatg
     4201 gtgatatttt attggcactt cctagttcag gacttcattc aaatggttat tctttagcta
     4261 gaaaagtact ttttgaaagt ttaaaattaa aatttgatga caagatagag ggtaaaaatt
     4321 taattgatat tttgttagaa cctacaagga tttatgtgcg tgattttctt acactaaagc
     4381 cttatatcag tgctctagct catattacag ggggtggttt agtagaaaat ttaccacgcg
     4441 ttttgcctcg tggtatgggt gcaactatac gcaaacatca tcttaaaact cctgaaattt
     4501 tttatactat aggacaggct gtagaagaaa gcgaaatgta tagaagcttt aacatgggag
     4561 tgggtttagt aatggttgta gatccttcta atgtaagtaa ggttttagaa aattcagatg
     4621 cctttattat cggcgaaatt tgcattaatg aaggtattgt tttagagtga aaacaaatta
     4681 ttatgattat ttatgtgcta aaatgtatgt aattttgccc ataaaagccc ataaagacaa
     4741 actaaaattt tatctttctt atgtaaataa gaaagataaa atttttagag ttaatgtgtg
     4801 gaagtgggcg gttttgataa aaattgccaa agatgataaa acgaaatatt tttgttcgaa
     4861 tgtattaaat aaagggtaaa atgcacaatt taaatgaagc tttgtttcaa aaaaagataa
     4921 aagaaattcg cttaaaagca atagcgagta ttatttgtgg gtttttaggt atcattcctt
     4981 atcttggagt tttatttgtt cttgcgagtt ggattttatt ttttattgtg ctttatgatt
     5041 taaaaatcta tggtggtgct aaaaatttgt ttaagaattt ccttattagt gtagggattg
     5101 gattttttgg tattcttgtt aatacaagta ttttatttgc aatgctaaag cctagaactg
     5161 gcatttttgg tgggctttat tttaatcaag ataatatttt atggctattg ctatattttt
     5221 agtattacat tttgctattt tggctttaat ttttcctttt ttgaaagctt tttactatga
     5281 aattgctaga acaacaaagc aaaagtattt cacttatgct tttaatacct tttatttagg
     5341 gcttcttact ttgattatcg gcataggctt ggtgtttttg ctagcaagtt tggttttttg
     5401 gattttagcg tgggtcaaat ttaaagaatt tgatgagcaa gaactttcaa atttagaaga
     5461 aagattggca aaagcacaaa aaaaggtttt tgattttgat ttaaaatgga ttaaaatcac
     5521 aatggcttca tttataattt taaacttgct cgttttaaca ttttcgttta tattagaagt
     5581 tattagcttt gaagatttta ggttttacta cacaaaaaaa actttatttt acacagccat
     5641 aatcctagct ttgcttagtg tgtttttgtt ttgtaaaaag ataaaaaatt acaaactttt
     5701 tatttatttt ttcatatggc aaggtttaag tgtttttggt agtcatcttc tttttattcc
     5761 tgattttatg gtagatcaac aaattgtata tggaagttta aacataatat taagtctatg
     5821 ctatattatt tttgcttttt ta
//
LOCUS       DARGEM010000097         5822 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.097, whole genome shotgun sequence.
ACCESSION   DARGEM010000097 DARGEM010000000
VERSION     DARGEM010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.097"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(6..1341)
                     /locus_tag="SFZ78_001398"
                     /pseudo
     CDS             complement(6..1341)
                     /locus_tag="SFZ78_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            complement(1350..2717)
                     /locus_tag="SFZ78_001399"
     CDS             complement(1350..2717)
                     /locus_tag="SFZ78_001399"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8212254.1"
                     /translation="MTGISVFDHKLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            complement(2727..3891)
                     /locus_tag="SFZ78_001400"
                     /pseudo
     CDS             complement(2727..3891)
                     /locus_tag="SFZ78_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(3904..5349)
                     /gene="dcuC"
                     /locus_tag="SFZ78_001401"
                     /pseudo
     CDS             complement(3904..5349)
                     /gene="dcuC"
                     /locus_tag="SFZ78_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(5353..5715)
                     /locus_tag="SFZ78_001402"
     CDS             complement(5353..5715)
                     /locus_tag="SFZ78_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8212255.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEVIAQKG"
BASE COUNT         1893 a         1031 c          882 g         2016 t
ORIGIN      
        1 aatatttaaa aagaaaagtg gtttaaattt tctagattga tgatttgatc tagaattttg
       61 ttagctttag cattatcaag gtaaatttgt gcattggcta aaaatttagc ttttaattct
      121 tcaaaactta atggattatc aaaattacct ttatttataa aaacatcttt ttggattgtg
      181 cgtccatctt gcaaactggc ttctaaatgc cctggaaaat attttggaaa gccttgagat
      241 tttctttttt cgtaactgat ttttttagca aattctagta cttcttcacg ctttaaattt
      301 tcataagatt caagagtgat tttaccatca aagaatccta gagtcattaa aaaagcatgg
      361 aaaatttagc ttcataagca ctatttggag tgtattttgc ttccaaagga tcgcagataa
      421 aagaaacagg aacttcatct acaaaacaat gaatactttt aatttcatca gcttttaaac
      481 catcattttt taaagcaata gcacaatcaa taagcccatg agcaaaatga caacttggat
      541 aaggcttgat tcttgcatag tttgccaaat ttctcctaag gctttgttaa gttctgtttt
      601 atcgcattct tcttctatgc caaaacattt aaagatatta tccctacctt caaaaatact
      661 caaaggtcca ctcatatggt ttttagcaaa atgagctact ataataccgt ttttaatagc
      721 attggcaata tgcaaaactt ttgaattaga tccattggat aaaaactcat taatcccact
      781 tgcaaaactt cctgcaagtc ctaaagcatt gatgatttgt tctttgttaa gatctagcaa
      841 gattgcactt gcacttacgc ttccaaaaat tcctgcaata gcagtggtat gaaaaccacg
      901 cttatgaaaa gtacctttgc ttgcaatgcc tactctagct gcaatttccc agcctactat
      961 aaaagctttg atgatttttt tcgcatcttt gttaacatga aaaccataac ttaaacaaag
     1021 tggagttaaa attgcacttg catgcaaaat cgcttctgta tgtgtatcgt caaaatctaa
     1081 cgcatgagaa gcaatgccat ctagcatggc tgcgtatata ggatctaatt tttgatcatt
     1141 tacccaaata agagtatttt tttctgtgct taaattttca aaagctttaa aagcatttaa
     1201 aacacattct tctttgcttg ctgctatagc tgttccaagg ctatcaagca taagttcttt
     1261 agctctttga acaactgtat tagggatatt ttcatattta agattgaaaa taaaatccgc
     1321 taaaatttca ctatagaaca tgatttttcc tattttaaaa tagcactatt tttgattttt
     1381 tccaaaaatt catctacaag ttttggtgca tatcctacat aggttgttgc atcaagcaaa
     1441 gcatcgattt ctttttcttt caatacctta gatactcttt tatctgcaag taaaacttct
     1501 ttaaaggttt tttgtttttc gatacctagc atagcatttt cataaacaat ctcatgggcg
     1561 tgttgttttc cataatgatc gcttaatgca aacataacac gctctgctaa aacaaaacca
     1621 ttaagagtat ttaaattttt aagcattttg tcttttttta cttctaaatc actaagagcg
     1681 aatttcatat ttgctaaaac cacagaaagc attaaaaaca tttcaggtaa aagcttccat
     1741 tccattttcc aaacttgacc atctctttca tgttcatgtc tttcaatatc gcttaaaatg
     1801 gctaaatttg ccttaaaggc attgcttact gtaactgcat tttcgcttac tgcaggattt
     1861 cttttgtgtg gcatagtgct tgatcctact tgtcctttgc caaaaggttc agcaacttca
     1921 tcaatttcat tatgtgaaag gattaaaatt tcatgagcga ttttgttaaa ggttgcgttg
     1981 atattgccta gtacaaaacc aagttctata aagcgatcac gtgcaggttg ccaagaaata
     2041 ttaggcacat caagtcctaa attttctaaa gtgagttttt ctacttcatt gcactcatca
     2101 cttaaacttg ctttagttcc tacagcgcct actatactgc ctacataaag tcttttttca
     2161 agttcaagta ttctttcaaa atgacgctca agttcgctta accaaatagc cactttatgt
     2221 ccaaaagtaa taggcaaagc ctgaagtgct aaagttcttc ccatcatagc agtgttttta
     2281 tgggttttag ctagtttcgc taaggctttt gcgatagctt ttaattcgct ttttacaaga
     2341 gtcattgctt ctttaaattg taaaaccagt cccgtatcga tgatatcttg agtggttact
     2401 ccaaaatgta catattcacc taaattatta tcgcaagctt tttctaatcc tcttacagta
     2461 ggaactaaag ggtgtttggt ttttttaaat tcagcaaaga taaagtccat atccataaat
     2521 ttataatgag ctttttttgc aatctcatca gctgcttttt tagggataat tttaagtttt
     2581 gcttgtgctt ttgctaaagc tgcttcaaca tcgagccatt tttgtatgcg gttttgttcg
     2641 caaaaaatag cacgcatttc ctgcgtgctc catgagtctg ctaataattt atgatcaaat
     2701 acactaattc ctgtcatctt atctccttat tttttaatac tatcaaaagc ttgtgttaaa
     2761 tcagcaatta aatctttagt atcttcaaga cctatatgaa atcttacaaa tggtcctctt
     2821 gcacttaggt ctgttgcagt tctaggcgga gtagttacgg tggctaagct ttcatatcca
     2881 ccccagctag caccaattga aaagtattct agtttatcta caaatttaat agcatcctct
     2941 ttgttataac cttctgcaaa ttctatggta atcataccat ttgcaccttt atgatcacgc
     3001 atgaaaattt catgatttga gtgggatttg agttttggat agaaaattgt tttaatttct
     3061 tttctgcttt gtaaaaactc tacaatttca tcagcacttt tttcatgagc tttcattctt
     3121 acatctagtg ttctcatacc acgaagtact aagtaagcat catcagggct tgttgtaaag
     3181 cctaaagctt ctggaagttt gtcaaaattt ttccattctt tttcgttgat tactactata
     3241 cccatggtta catcagagtg tccactaaga tattttgtag cggcgataac tgaaatatcc
     3301 actccaagtt ctaaaggatt tagaaaatat ccactagaat aagtattgtc aatagctaca
     3361 gggatattat gcgcatgggc aattttgcaa agttttggta aatctatgat ttcataaagt
     3421 atagaacctg gactttcaca taggataagc ttggtattag gtttgatttt tttcttctac
     3481 atcacttgca tcagctttta aaaaatcaat ttcaatgccc attttttcta aaaataattc
     3541 gcaaatcgtt cttacaggcc cataaattgc atcagtgatt aaaaaatgtg tatctttgct
     3601 tgcatagttt aaaagcacca tagctaatgc tgcaagtcct gttgggaaaa gttgtgctct
     3661 ataaccaccc tctagagtgc aaataagttt ttcaagttca aaattggttg ttgttcctct
     3721 agatccataa cttaaaacac gatctgtttt tcttaattct ctgtattttt gccaagttgc
     3781 gtgatcttta aaaagtatgg ttgatgcacg cataagtgta ggattgactg atcttacttc
     3841 agcgccttga tcgcctctgc cacaatgaat aagtttagtt tttgagttca ttttttctcc
     3901 tttttaaaga tagatataag tcataataac atttacaata gccgctacaa gcataggaat
     3961 agctgttctt ttaaccacgg caaaaggact tactcttgca atagctgaga tagctaagat
     4021 cgctagtgca ataggactaa cacatcttcc aaagcccgtc atgatttgaa tcggtgctat
     4081 catagtgata gtttcaactc caaagtgttt tgctatattt gggataagtg gggcaaagct
     4141 aaaaaatgcc gcatttcctg aacccattaa gaaagcacaa accgcaagta agattgaaac
     4201 agcgataata atagccaaaa ctccaaatcc tgcatttttg caaaattcta ttaaagtatc
     4261 tacaaaacct acagataaaa gaccacttgc aaatacttga ccacaaacga tgagtgaaac
     4321 tgtgataaca aataaatgtc ccattccttt aaagaaaatc atcatagaat taagagtttc
     4381 tactatactt ttatagcgta tcatttcaaa aataatagcc acaaaagttg aaatcaccat
     4441 tgctactgga acattcattt taattgcagt gctagcagct gctttaactt cttcagcgct
     4501 acttattccc attaaaacca agatgctatc aagcacggaa ctaaatccta ggattaaaac
     4561 caaaggaatt ataggtaaaa tcgcataaat tctaggaggc tttttaagtt ctttttcttt
     4621 accttcattt tcatttagtt cttttttcaa tttcttgcgc attgaagaca aaattatctt
     4681 ttttgtcaaa aaatttattg caaagatata ttgcaatact tacagctata atgataggca
     4741 aggttgtagg gagttgataa tgaacaaaat aaattgcagg atcaacttca gctttttctg
     4801 aggccatgat cacatttcca cttccaggtc catgatcgat atattgacaa atagcaatca
     4861 cacttaaggc agaaagtttt gaaacaccag agcgtacaag tataggatac atagtaacca
     4921 taagtaaaag tgccaagtct gcgtgagaag ggatgaaaag aactaaaaat tgcacgataa
     4981 aataagcaac tatgagtaaa acataaggag attttacggc ttttaaaggt ttttcaaaaa
     5041 ctttaaaaag tgcataagaa gcccctacat gatccatata agcagaaaaa cctgctatag
     5101 tcagtcataa gtgtaagtcc aagctctact aatgtacttg gacatggttt gattaaaaac
     5161 ttgaaaaata tcaaaaaaac ctagatttaa agaatctttg gtaacaatgt gtggagaaag
     5221 tccaaaaata gcagctaagg aaagtaaaag caagccactt aaaagcagtg ccatgtgagc
     5281 attgattttt ttataaagca taaaaacaag taaaaaaaca ctaaataaag aaaaaacaat
     5341 acctagcata ttttatcctt tttgagcgat gacctctatc tctactttag ctttttttgg
     5401 tagatctttt actgcaaaag cacttcttgc tggataagga gctttaaaaa attcagcata
     5461 aatttcatta aatgctacaa aatcattaat atcagctaaa aagcaagtgg ttttaaccac
     5521 tttatcataa ctgataccat tttcttctaa gatagcaccg atatttttca aagattgttt
     5581 ggtttgttct ttgatatcat ggctttctat ttcgcctgaa tcagggttga taggaagttg
     5641 tcctgatata aataaaagtc catttacttc tctgtaagct gagtatggac caatggcctt
     5701 tggatagttt gacatgaatt ctcctttgtt aaatatagat taagcagaat gcattttatc
     5761 actacaataa taatttgtca atagtttatt atcataataa taaaatttta tttttaagaa
     5821 at
//
LOCUS       DARGEM010000098         5787 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.098, whole genome shotgun sequence.
ACCESSION   DARGEM010000098 DARGEM010000000
VERSION     DARGEM010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.098"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..800
                     /locus_tag="SFZ78_001403"
                     /pseudo
     CDS             1..800
                     /locus_tag="SFZ78_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
     gene            complement(795..2768)
                     /gene="uvrB"
                     /locus_tag="SFZ78_001404"
     CDS             complement(795..2768)
                     /gene="uvrB"
                     /locus_tag="SFZ78_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG8212256.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNILENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDIPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            2922..3152
                     /locus_tag="SFZ78_001405"
     CDS             2922..3152
                     /locus_tag="SFZ78_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212257.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            3142..3384
                     /locus_tag="SFZ78_001406"
     CDS             3142..3384
                     /locus_tag="SFZ78_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212258.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            3381..3818
                     /locus_tag="SFZ78_001407"
     CDS             3381..3818
                     /locus_tag="SFZ78_001407"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8212259.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            3800..5653
                     /locus_tag="SFZ78_001408"
     CDS             3800..5653
                     /locus_tag="SFZ78_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG8212260.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKIG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(5663..>5787)
                     /locus_tag="SFZ78_001409"
     CDS             complement(5663..>5787)
                     /locus_tag="SFZ78_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8212261.1"
                     /translation="LIYTFFNIFENELNHLKQTHPHIIDSWKYYKEFEKIYKDK"
BASE COUNT         1988 a          792 c          922 g         2085 t
ORIGIN      
        1 aaaagttttg attttttagg ttttttaaaa atcacaggag ttttgctttt agcaactttt
       61 atagcttttg tatttcataa atttaatact cagccaagta atatggttat gatttttatt
      121 ttagcagttt ttgcttcttc ttttatttct gataataaaa ttttcgcctt ttattcttct
      181 ttggtaagtg ttttgattta taattttttc ttttttagaa cctattttta gtcttaaagt
      241 tcatgatagt ggaaatatta ttacttttac aaccatgttt atagttggat ttttaacagc
      301 tgtttttact agaagattaa aattgcaatc taaaaactca ctaaaagagc ttatagaaca
      361 gctattttgc ttgaaaatag tgaaaattta gcaagagtga aaagcaaaca agagctttgg
      421 gaacaacttg gaaatcaagc tttaaaatta ttaaatttgc ctattattat ttatcctata
      481 aataaaaaca atattttatc gaaacctttg ttgtttttta acgatgataa gcaaatgtta
      541 aaaaattgtt ttagtgctga tgagattgct attgctcaat gggttgcaac aaataaagaa
      601 agagcaggtg tttgtacaaa taccctgcct aatgctaatg ctaatgctat gtatttacct
      661 atagaagatg ggaaaaaact aaaggggtta taggtatagt tttaaaagaa aaacgtccct
      721 tgcaagactt tcagtatgaa attttaagtg ctttacttaa tgaggcagga gttagaacaa
      781 gggatatatt tttattataa atcccttaat ttattaatct catctctaat agcagcagct
      841 ttttcaaact caagtgcttt agctgcttca agcatttgtt ttcttaactc tttgacaagt
      901 ttagctcttt cgctagcagg cattttttct agttttttac ctttgcgata aatttcgcct
      961 aaatcctctt cattttttaa actctcttca atatggcgtt taactgaagt tggcgtgata
     1021 ttgtattttt tattataagc catttgaagt ttgcggcgtt catttgtggt atccatagct
     1081 tcttgcatgg attttgtgat ttttttgcaa aaaagcaaaa ccttaccatt gacatttcta
     1141 gctgctcttc ccatggtttg gattaaactt gtagtgcttc ttaaaaatcc ttccttatct
     1201 gcatccataa tggcaatgag tgaaacttca ggtagatcta gtccttctct aagtaagtta
     1261 atgccaatta gcatatcaaa agcaccgctt cttaaacctc ttatgatttc attacgttct
     1321 atagcatcga tgtctgagtg catgtatttg acttttatac caagctctaa ataatacctt
     1381 gtaagttctt cagcgagttt tttagttagc acagtcacta aaacacgttc attcctttgt
     1441 atgacttttt tagcctcatc aaataaaatt tcaacctgat tatcactatc ttttaactct
     1501 attaaaggat caagcagtcc cgtaggacgc atgatttgat gaaagatgtt ttctttactc
     1561 agttcaagtt ctaaaggtgc aggtgtggct gaaacaaaaa gaaattgaca atttttatgg
     1621 ataaattcat caaacatcaa aggacggtta tccaaggctg aaggcaaacg aaaaccataa
     1681 tccaccaagg tttgttttct gcttctatct cctgcaaaca tacctctaaa ttgtggtaaa
     1741 gatacatggc tttcatcgac tataacaaga aattttctat ctttaatcgc aaaataatca
     1801 aaaagcgtat aaggaatatc accttcttta agccctgtta aatgtcttgc ataattttca
     1861 acgcctttac acattcctgt gcttgtaagc atttcaagat caaattcaac cctttgttta
     1921 aggcgttgat attctacgag tttattttca tgttcaaaat aagcaaggcg ttcgttaagt
     1981 tctgctttta tgtcttttat cgcttgtttt agccttgttt cacctacact aaactggctt
     2041 gtaggataga gtatgaagcg ttttaaatct ttgccttttt tattttctaa aatattgtaa
     2101 tgatacatag catcaagctc atcgccaaaa aattcaagtc ttactacttc atcttcataa
     2161 taagctggat aaatgtctat aatatctcct tgaactctaa aatctgcacg atcaaaaaaa
     2221 ttatcatttc ttttataacc catatctaca agttttttta aaagttcttt ttgtgaaatt
     2281 tgcataccta gttcaaagat taaaaccatg cctatgtatt catttggatt accaagtcca
     2341 taatttgccg aaacactagc tatgcaaact acatcttcat aacttaaaag agaagcagta
     2401 gcactcagtc ttaaacgctc taagtcttca ttagtggagc tgtctttttc tatgaaaaca
     2461 tcagtgcgtg gaatataggc ttcaggttga taataatcat aataagatat aaaatattcc
     2521 acatgatttt tagaaaaaaa gcctttaaat tcgctataaa gttgtgcaca aaggcttttg
     2581 ttgtgactca tgataagagt gggcatatta agttctttaa tgacatttgc catggtaaag
     2641 gtttttccac ttcctgtaac gcctagtaag gtttgatatt tgttgccttt ttttatactt
     2701 tttactatac cttttatggc ttcttgttga tcaggactag gtttaaattc gctggtaagt
     2761 tctaacattt ttctacttta tttttatttt tgaaaaaatt ttaaaagaaa atgctttaat
     2821 taaaaattaa ttgacaataa aaacctaaat ttaaattttt ttctgctaca atatcaaata
     2881 atattttcca taaattacaa attttttaag aaggcaaaaa catgtttgat gaaaaaataa
     2941 tcaatactat gacagataaa gtaaatgaat taattgaaaa gtataacgaa gtttgcgaag
     3001 ccaatgaggc tttaagaaat gagcttgtaa gcgttaaagc acaaaatgaa gcaaaaagta
     3061 atcaaattat gcgtttggaa gaagaactta aatctcgcaa tatagaaagc gaagatattt
     3121 ataagaaaat agaggctgtt cttggcagat aatctaaaac aagtcattgt taatgttaat
     3181 gcaaaagatt tcattgttaa gtgcagtgaa gaatttgcaa attttttaga agatgatatc
     3241 gctttgattt cagggggtac taaaaaaata gaacttaaac gctttgtaga tgcgtttgtt
     3301 aaaaaaagtt atgaaaatta tattctagaa agagaactta agaaactaat aaaagcaatc
     3361 aatgaagaac tcccgacaaa atgaacaaag cttttactct gcttgagctt gtttttgtga
     3421 ttttgatttt gggaattttg tcaagcttat ctttatcttt tatcaatact acaaaagatg
     3481 aggttaaaat tttaaaatta aaaatggact atgaaatgct aagctcagct cttgctttaa
     3541 tgcgtagtca aatgagactt aaaaatttaa attttccaga aattttagat aatgcgcaaa
     3601 acaatcaagc caaagaaaaa ctcttttatt gtttaaatga ttgtgattat tctttgcttg
     3661 atacacctat ttattctgat tttaaatctt ggataaaaat aggtaaaaat cactatagat
     3721 ttgcattaaa tgctaaagag atggttgaat ttatttatga ttctaaagaa ggtttgttaa
     3781 aatgtatagg aagttctaga tgcaaagatc tgatataaga tattatgaac ttgcaatttg
     3841 tggtttgtat ttggataatt taacttttca tagttttgat gaaatcaaac ctttaacaca
     3901 agtattagtg gatttaaaat ctaaaaaaaa tcttaaagcc atcgtactta aagaatgtca
     3961 aaaacctgat tttaaaacta tagaaattaa agaaattaca aagtattttc taactccttt
     4021 gcaacttgaa ttggcaaatt ttattgttta ttattatgct tcaaaacttg gttttgtttt
     4081 gggttttttt gaaactagtc ctaagtatga atgtcaaaaa atgtttttta aagatacccc
     4141 taagctaagc aatcaacaac aaaatgcctt aagttttctt caaaaagaaa ataattcttt
     4201 gctttttgct gatacaggta gtggtaagac tgaaatttat atttctttaa taaaagagtg
     4261 tttagaacag ggtaagcaag ctttactttt gatgccagaa atcgcactta ctccacaaat
     4321 gcaaaagcgt ttagaagtat attttaagga taattttttc ctgtggcatt ctaaaatttc
     4381 aaagaaaaaa aagcaagaat atttagagtg tttttgcaag ggagaagtgc ttttagtagc
     4441 gggtgcaaga tcggctttgt ttttaccttt tagaaattta ggacttattg tagtagatga
     4501 agaacacgat aattcttata aggcttctaa ccagcctttt atcaatgcaa gagatttagc
     4561 actttttttg ggtcaaaaaa ataatattaa agtggtttta ggttctgcaa ccccatcttt
     4621 aacgagcttt tataaacaaa aaagttttag actaaaagga actttttttg agagtaaaaa
     4681 acatttttta tatgatgaaa atgagctcgg tataacacct atgcttttaa gcgaattaga
     4741 aaaaagttta aaacatcaaa aacaagctat agtgttttta cctacaaggg ctaattttag
     4801 gcaaatcatt tgcaaggatt gtggagaaac gataaaatgt cctttttgtt ctattgctat
     4861 gagtatgcat aaaaagaaaa atattttaaa atgtcattat tgtaattata cttctttaat
     4921 agagcaaaat tgtccaagtt gcaaaggaga aatgttagaa gctagaaaaa ttgggactgc
     4981 tgaactttta gagcttttgc aaaatgcttt gcctttagca aaaatagcaa aatttgatag
     5041 cgatgaaatc acaagcgtta aaaagcttaa tactatttta aaaaacttta atgaaaataa
     5101 gatcgatata cttattggca cttctatgct tgctaaagga catgattatc atagtgtgga
     5161 tttgagtgtg attttagggc ttgatgaata tttgttgcgt cctagtttta gagcgagtga
     5221 agaaacttta gctttagcta tgcaagttgc aggcagggca gggcgtaaag gcgaagcaag
     5281 agtacttttg caaacaaaaa atagagcttt ttttgaaagg tatatagaga attatgatgc
     5341 ttttttaaaa gatgagttag aaaatagaaa agatctttac cccccattta aacgcctttt
     5401 aagagttctt atagaagata aagatcaaaa aagtgcacaa aaactttgtg aaaaatttgc
     5461 ttctcaattt agaaatatca aacaggtaga attggtaggc tatggaattt gtggagttga
     5521 aatgctgtat ggaaaatatc gtttttattt gttgcttaga agtgaaaatc ataaagcttt
     5581 agtggcaatt gaaaattata ttttgcaatt taaaaatgca agtgcggata ttgatcctat
     5641 tgattttgtg taagtgatat gattatttat ctttgtatat tttttcaaat tctttataat
     5701 atttccaaga atcaataata tgaggatgtg tttgttttaa atgatttagt tcattttcaa
     5761 aaatattaaa aaaagtgtaa ataagtg
//
LOCUS       DARGEM010000099         5761 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.099, whole genome shotgun sequence.
ACCESSION   DARGEM010000099 DARGEM010000000
VERSION     DARGEM010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5761
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.099"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..446)
                     /locus_tag="SFZ78_001410"
     CDS             complement(<1..446)
                     /locus_tag="SFZ78_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8212262.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYE"
     gene            complement(446..1270)
                     /locus_tag="SFZ78_001411"
     CDS             complement(446..1270)
                     /locus_tag="SFZ78_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212263.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(1281..1757)
                     /locus_tag="SFZ78_001412"
     CDS             complement(1281..1757)
                     /locus_tag="SFZ78_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212264.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1766..2257)
                     /locus_tag="SFZ78_001413"
     CDS             complement(1766..2257)
                     /locus_tag="SFZ78_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG8212265.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(2247..3182)
                     /locus_tag="SFZ78_001414"
     CDS             complement(2247..3182)
                     /locus_tag="SFZ78_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG8212266.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(3186..4355)
                     /locus_tag="SFZ78_001415"
     CDS             complement(3186..4355)
                     /locus_tag="SFZ78_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG8212267.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(4365..4970)
                     /locus_tag="SFZ78_001416"
     CDS             complement(4365..4970)
                     /locus_tag="SFZ78_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG8212268.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCRSNNDNSDTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(5090..5302)
                     /locus_tag="SFZ78_001417"
     CDS             complement(5090..5302)
                     /locus_tag="SFZ78_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG8212269.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            5463..>5761
                     /locus_tag="SFZ78_001418"
     CDS             5463..>5761
                     /locus_tag="SFZ78_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8212270.1"
                     /translation="MQGHITNYTKERYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRD"
BASE COUNT         1940 a         1038 c          635 g         2148 t
ORIGIN      
        1 ctttcgtata attgaatacg cgcaaattca tcttttaaat attctaaata atctgcataa
       61 gcctcttgtt tctcaaaatt taaacgaggt tttgcttcta aaaattctaa aaaatattca
      121 cttagactaa gctcactttg caataaggca agagttaatg tttgagtttt attattttct
      181 aaacttttaa aaaaactcga attttgattt acaaaacctc tttcgataag tttttttaaa
      241 tcctccaaag catcaagata aagatactta tcatttccaa aaattgtcga taataaagta
      301 aaggcattga tagaagaaat agaaacgaca taatttctac aaagttctct aagaatcaaa
      361 gcctcatttt tagcacactt aagctcttta taaatttgag tatcttctat atttttcaaa
      421 cttaaaaaat tttttaattt ttccattatt ttttaaattc cttaagctca tcttcgttaa
      481 attctacgca aatattttca tctaaaaaat gaccttcaaa aggtagataa caaattttta
      541 gttttccatt attaagcaaa aaattattat taaattgtaa attttgcaga tcttcaaaac
      601 actcatcaca tgtattttta agcttctcat gtaaaagatt ttgaaatttt tgattttcag
      661 tattatacaa atcatttagt tttacaaatg cgtgagcatt aatatcataa acaaaattat
      721 ttaactctaa aatagcacgg ctcataccat cttcataaaa ataataccat tcttcaaaac
      781 taatttttcc atcttgtaaa aaaataggct tttggcgaat ttgttcaaaa ctaaatacac
      841 tcttatgaac aggatgaaat tctttaaaat catcattaaa acctataaaa tcaagactac
      901 gctttatacg aatgccatct tgcgtttcga caagttctaa agtagttgtt cctaaatttt
      961 ctccttgaaa atttttatta tcatatgtaa gcattttaga agaattgatt ttatattttt
     1021 tacgctcatc ctgccaaaaa tcatttgtct taacgagcgg aatctctaaa tttccattta
     1081 tatcatcaat aattaaaaaa ctagaacttg tttgattttt atccctgtca aaaagtggag
     1141 tcataggcgc attatcataa actatggcaa aaatttcttt atcctgcaaa tgataaaaat
     1201 acaattcacc tttataaact tgcgctaaag ctagatttac aaagcaaaat accagtaaaa
     1261 aaaatttcaa actctatcct tcaattttga atatgcgtta agataatttt agtatgtgaa
     1321 attttatcaa aaaaacttac tttattatca caaacttgat aaaaaatttc ataatttttt
     1381 gcttttaaat tttgttcaaa accacaatca gttttttcta aatttttacc ctgccataaa
     1441 gcatttgcct ttaaaatatc acttaaaata tcatcataat atacattttt aaaaaatttt
     1501 tgattaaaca cttttttatc ataacacact gcattgatac aaattttatc tttgattttg
     1561 agttcaaaaa aagcttgccc tagtttataa acttctaaat ttaaagcatt attttctttt
     1621 tttaaaaaag ctgcgtcatt gatttttatc ataggagaag caatcaaaac catcaagctt
     1681 tgactcgaaa aattttgatt tttcacacta caagcacaaa gaaaaaaaat aaaacacagg
     1741 gctaaacaat gcttcaaatt tgaccttatt taagattttt aaaactgata tttaactcta
     1801 aatcaagctc ttttacaagc ttcatcacag cttgtaaatc atcaatttgt tttgctacaa
     1861 cacgaatttc ttcaccacga atcgaagaat taactttaag tttgctatct ttgatagctt
     1921 tattgatttt tttggcattt tcactatcaa tagcatcgtt tgctttcaaa tttaaacgaa
     1981 acattgctcc actttcacga gaaagctctt taatagcatt aggattaatt cctcttttga
     2041 taagtttaga aatcactata tcttttaaaa catcaagctt tccttcacta gaagaactga
     2101 gtttaaaaat actctctttt tcgcttaaat caatctcaca cttaattcct tttaagtcat
     2161 aacgactatc aagttctttt ttagcttgtt caaaagcatt ttttaactct tgtttatcta
     2221 aagctgctga aatatcaaaa ctatgttcac ttgccatttt ctatccattc ttttaaatta
     2281 ttataaacta tatccattaa agcatttaaa gcctccttgc tcgcccacgc aacatgagga
     2341 gtgataataa gattttcttt atttttaatg cttaaaagtg gatgattttt catcataggt
     2401 tcaatttcta aaacatcaag ccctacacga atattttttt catctatgat tttagctaaa
     2461 tcattttcat tgacaatccc acctcttcct acattaatca aaatcgcatt atcttttaaa
     2521 agctttaatt cttcaaaggc gagtaaattt ttggtttttt catttaaagg tgcgtggata
     2581 cttataatat cgcaagtttt taataaatct tttaattcca aatgtacaaa atctgcgttt
     2641 ttattagctc cactcgtaga ataataataa atttcggctc caaaagcctt tgaaattttt
     2701 gccacttctt tacctatggt tcctaaacct ataataccat gttttttacc acttaaggtg
     2761 tttaaaattc tactataatc tgtaaaaata ggactttcac accatttacc ctctttgctc
     2821 catttgtcat aataaagcac ttgatttaaa aaagcaaaca taaacgcaaa agtatgttgc
     2881 accacactca tagtagaata cccagcagca ttttttacaa taataccttt ttctttagca
     2941 tactcaatat cgatattatt aacccctgta gcagtttcca aaatgagttt taaattttta
     3001 caagcatcaa tcacatcttt atcaattaca accttgtttg tcatggcgac attagcatct
     3061 tttaaacgct ctatggtttg ctctttattt gttgtggtat aaatttgcaa agaaccaaat
     3121 ttttcaaaaa cacttaaatc ataatcccct aaagttgccg catctaaaca aacaattttc
     3181 atttttcaat cctttataat atgtcctaca aatttagaat aattatcaag cacaagtcct
     3241 ccttttctaa atcctaagcc acacccttca taagcaaaga aaacacctgc ttgatagtat
     3301 tcgttttcac atgaattaaa ctctacatat tcttgataaa tagccttatt attcccataa
     3361 ggacctacat tctcatgcaa agtttttcca tctttaatta tactgatatt tgcaccttct
     3421 ctaccaaaaa caggtttttt aacatagttt ttaccttcca aaggagtatc ttttgtttct
     3481 aaaagtaatg gatgatttgg ataaagttcc catagaattt ttaaaattcc cttagattga
     3541 aataaaagcg tataagcagg atttaaaata attgctcttt gattacgcat gatttgagtt
     3601 aaaagcatgg caagttcacc ctcttctatg gctatatctt cccaaggaat aagcttaaac
     3661 caatactcat aattttcgcc ctctttaaaa ataccctctt cgctaaattc cacctcatcc
     3721 acaaaggaaa aattagtttg aaaacctgct tcattggcta tatgtgcaag caattttgta
     3781 gtgatttctt cttctttact tcctgcaaca cttgaaaaaa gaattttcca tccttgataa
     3841 tgctcttcaa acccttcaac actttcatca agggtaataa gtcttttaaa attatccatc
     3901 aaactttcat aaatgctatt aaattgtgcg ctttcatcca ttccattttg ttttaaaagt
     3961 gcccattgta aaatcgcact ttcaaaaaga gcagtagggg tatcagcatt aaattctata
     4021 agttttatag gcttgccatc aagtccaccc gctaaatcaa aacgcccata taaatgccaa
     4081 tgaacctcat tttcccaact catcttaatt gcatcaataa gattaaaagg aattccaagc
     4141 tcatcaaaac gatcattatc aatcacttct tgcgctgcag caataaacat atcataaagc
     4201 tcatttaccg cttcataata agcattagct tcactttcct taacacaaac taacttattg
     4261 ctaatataat cacttccatc ttcatctgta tgccaagaaa aacctatatt ttctaaataa
     4321 tctttttgaa gtttatctac ttgtagtaat tgcattattt atccttaaga accaaaagaa
     4381 gaactagaac ttgtggcttt agagcctccg ccaaaaaagc ctgatttttt agcacttgaa
     4441 gcagagcttg ttgtgcctgc tttattaaaa ctattaacac tcctttgata agcactttga
     4501 tttgaaaaag caccgcgttg ttggttggca aaattttgat tattgaaaag ttttgaacct
     4561 atccaacttc ctaaaatagc acctgcagca cttgcgagta aagtttcccc taaactcaat
     4621 cccccactac tgatttgtcc attgtcttta gttaaatttg aagttccatt atcaatttta
     4681 gctgcttctt ctttaatcaa agcatccatt tcttctttgg ataaaattct ttctgtgcca
     4741 ttaagatctt ttaaaactac ccttgtttca tcacttggat attgatcttt gattttatac
     4801 tgccctggag ctgtttcttc gataattaca aaagctcctt gagcattagc tgcttgattt
     4861 aaagtatctg aattgtcatt attacttcta caacctgcta aagcacctcc agcaacagct
     4921 gctaaaccac ctatcatacc aatttgaatg atttttttga tttttttcat aagtttatcc
     4981 taaaaacaga aaatttaaat tagaaatttt aacaaaaaat aataaatact ttttaattta
     5041 ataccaaatg aagtttgtag atataaaaaa gccctttcgg gcttttgggt tagagtcttg
     5101 actcgtagcg tctaagcata taaagtcttt taagcatttt tttgcgtgct gaaatttttt
     5161 gttttttgcg aatttcagtc ataggctcaa aaaatcttct tgctcttact tcagtcacaa
     5221 ctagatttct atctacttgt tttttgaatt tacgatacgc ttcatcaaaa gactcgttag
     5281 gatgcacctt gattcctggc acagtcctca ccacctttct gtgtaaattt ttgttgtgaa
     5341 atataattat aaaacacttc ttattaattc taacttagaa agcatttaaa aattgtttta
     5401 gtttttatcg gttataatcc ttaattacaa agtactaaaa aattataatt taaggtctaa
     5461 aaatgcaagg acacattaca aactatacaa aagaacgata ttttgtatat ttaattgcaa
     5521 gtattatcat atttgcccta cctttcataa gaattaatga gaatcatttt tttcttttaa
     5581 gttttgatca ttctaaatta aacctatttt ttatttcttt ttcaacacaa gaattttatc
     5641 tcatgccttt tgttcttata tttctttttt tatttatttt ttttattaca actttaggtg
     5701 gaagaatttg gtgtgcttgg agttgtccac aaacgatttt tagagttata tatagagata
     5761 t
//
LOCUS       DARGEM010000100         5710 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.100, whole genome shotgun sequence.
ACCESSION   DARGEM010000100 DARGEM010000000
VERSION     DARGEM010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5710
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.100"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..240
                     /locus_tag="SFZ78_001419"
                     /pseudo
     CDS             1..240
                     /locus_tag="SFZ78_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843554.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
     gene            244..471
                     /locus_tag="SFZ78_001420"
     CDS             244..471
                     /locus_tag="SFZ78_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEG8212271.1"
                     /translation="MCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLN
                     GNSSIGKNCFLATRVSLLPCVNLEDNCIVSR"
     gene            544..864
                     /locus_tag="SFZ78_001421"
     CDS             544..864
                     /locus_tag="SFZ78_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HEG8212272.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNIVFSR
                     VWMI"
     gene            852..1103
                     /locus_tag="SFZ78_001422"
     CDS             852..1103
                     /locus_tag="SFZ78_001422"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212273.1"
                     /translation="MDDLNCDFIHFFNTIYIKLIELCGSNLERFTPLKDLKKLGFHII
                     CSKGNRGALANLLLFNEISSFFKIIEKYDYNFKECYKDM"
     gene            complement(1276..2079)
                     /locus_tag="SFZ78_001423"
     CDS             complement(1276..2079)
                     /locus_tag="SFZ78_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8212274.1"
                     /translation="MEIGKKIRIAREEQGYSQEQLANELGITARTLQNYEYGRSDVGV
                     ILVGRIAKILKINSDYFFKDDSSLVVRKSTDKNVRKSFVSDEKMFVSKTNLKNVSKLP
                     LNMSPSNVSKSTNFVSYSSPNTNLESQTLNDDMINIPFFENVRASAGNGAYNDEESTQ
                     ALGLSKSFLRECFGLYSFINLSVILGQGDSMAPTLPENCYLLIQQGEVAEGEICVTRI
                     EDELYVKRLQKRPKLKLLSDNKAYEPINLEGENFEILGRVVGYFKKTTL"
     gene            2178..2447
                     /locus_tag="SFZ78_001424"
     CDS             2178..2447
                     /locus_tag="SFZ78_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212275.1"
                     /translation="MNFKQASNLLNGVKHLFESENFNGKDELIKLSLEKLEGFLANQK
                     SKEIAENVSKCFLKHDTGKKTYKSALKSHTFKGYKGRQIKERVEL"
     gene            2463..2654
                     /locus_tag="SFZ78_001425"
     CDS             2463..2654
                     /locus_tag="SFZ78_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212276.1"
                     /translation="MKNKLVKTMSAKGVKLMTWAKAKGLNHKDITILYDLSHGRIKGI
                     RGRAKELKEMLEKDGFKVA"
     gene            2655..4769
                     /locus_tag="SFZ78_001426"
     CDS             2655..4769
                     /locus_tag="SFZ78_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEG8212277.1"
                     /translation="MWVNANIFCDNNSIGLRNLQKKSKRAIENNEKILHIDKKIFSYR
                     YTQGKGHGGKTLQIWSKPLSKEEAKLVEQGFNIEDISNTTITPKTTQEFLSKALNDDV
                     LLKNSKALQVQNTDKTKLSENQIQINKDSLSLFAKASSKKQNLALQKAAVVKEWLHAK
                     GKISTNDFINYINAKKIYEFKLTQNKLFAWQKEYLANGLDALIDKRENKKDDAISALG
                     IKELFINTLLAQKGRLNASNIHRVLNYELAKNGKLDLKDFLGKKDEFISYECVLRSMK
                     KYLKENKLIKNIILHGEDGAISRHLPALGVSNWKVSTINEIVEIDASPLDAICKVDFI
                     NETYGLKGDECSWHKRYTIISLIDTYSGVASFYLGFSEDSLSIARAIAKYISTYGVPK
                     CIHSDNGKAFLSKNVKALLERLNIDYKAMPAYSGWSKPYVENKFKDLQNSLTANLVGY
                     IGSNVKERQAIEFFYSKKERRLKKGYKTNQRRLKTLEYMRECIDDYSAYFMNNKWLDR
                     LGATPKESFEAKISDAISIDELSLSMYLGGELKLRKVLNKGLSLNGTLFYNPKLYTHE
                     EVFVCENLNNQNEIFCFDKQKELICVANNLDLELGVSIEEAKVARKLVNRAIKANKDK
                     IDEQRMILEKNMEKYLALGKEKLEKVKSPKTKASNNAKKELEFSKALVSNGDFEHLST
                     KVIKDTKCKIPKWENAAKKAGY"
     gene            4858..>5710
                     /locus_tag="SFZ78_001427"
     CDS             4858..>5710
                     /locus_tag="SFZ78_001427"
                     /inference="COORDINATES: protein motif:HMM:NF024793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8212278.1"
                     /translation="MQELSKELECFLEQSGMKPSALARAIGASASLISQIKSASYKGD
                     VALWSKKIRDFIANHKDKQNEKPKKEQLFRSRDFSMATFVMSEAVNEKEIALIFGEAG
                     TGKTTIINEFIKTRPQSILIEATCHTSVGVMLDELLNALKIEANSNNASKLKAIARFL
                     KTNEKILIVDEAEYLPLKALEDLRRIADFARVPLILVGTEILYKNLMGKNKELKQLYS
                     RICGKWMMRGLSKEESDEFFGKGYFKFSNGNFRSSAKLLKKALRLAELEECEINDELL
                     TSASEMVI"
BASE COUNT         2227 a          754 c          972 g         1757 t
ORIGIN      
        1 tacgaaatta taggctatat tgatatacaa gaaaataatt tttttgactt aaaatatcta
       61 ggcaatgaag ataatttcga taaaaagttg attcaaaaag catcttttgc tttaggtgta
      121 ggacaaatca atttaagaaa aaaaatcctt gtaaaacttt caaaaaaatc atgtaatttt
      181 atcactttta tacatcctca atcttttgtt tcaaaagaag ctaaaatagg acaaggggtt
      241 atagtgtgtc cttttgtaac cattaatgct aattcaaata taggagattt tgtgctttgt
      301 aatatttatt caagcatagc tcatgattgt aaagtaggag aaggaagtat tttaagccct
      361 tatgctacac ttaatggaaa ttcaagcata ggaaaaaatt gttttttagc tactagagtt
      421 agcctgttgc cttgcgtaaa cttagaagat aactgcatag taagcaggta gtattattag
      481 caaaaactac acatccaatc aacttatttt tcataaaaat ataattaaaa caaggaaaaa
      541 acaatgaaag aaattaatat catagacttt ggtttaatgg gtaagcaaat aagtgcttta
      601 ttttatttat taggctatga aataggtgtt tataataaaa gcaagctcaa tatatacgaa
      661 tttgaaaaac aaataaaact tctacaaaga aaaatagatt tttctaattt taacgccgga
      721 aaaataaaca tttaccaaca tatagaagat cttaaaaata gcttgactat agaaagctta
      781 aatgaagatt taaatttaaa aaaagaaatc atgcaaattc ttagagataa taatatagtt
      841 ttttcgagag tatggatgat ttaaactgcg attttataca ttttttcaat actatttata
      901 tcaaattaat agaactttgt ggttctaatt tagaacgatt taccccattg aaagatctta
      961 aaaaattagg atttcatatc atttgcagta aaggcaatcg aggagcttta gcaaatttac
     1021 ttttgttcaa tgaaatttca tcatttttta aaattataga aaaatacgat tataatttca
     1081 aagaatgtta taaagatatg taaaaaagta aagtgagaga aattttaatc aaagtattat
     1141 tttatagtat tttgatgaga tttttttaga aatcaaagtg agcttttatc tttacatttt
     1201 tttacattgt gttttacaca tttttacatt ctttttacaa atactttaca aagtttttta
     1261 aacaccttta aaaaattaaa gagtagtctt tttaaaatat cctacaacgc gtccgagtat
     1321 ttcaaagttt tcaccttcta aattaatggg ctcatacgct ttgttatcgc taaggagttt
     1381 tagcttgggg cgtttttgaa ggcgttttac ataaagctca tcttcaatgc gtgttacaca
     1441 aatttcgcct tctgccactt ctccttgctg gattaaaaga tagcagtttt caggaagtgt
     1501 tggtgccata gaatcgcctt gtcctaaaat cacagagaga tttataaaag agtataaacc
     1561 aaagcattca cgcaaaaaac ttttagaaag tcccaaagct tgagtgcttt cttcatcgtt
     1621 ataagcgcca tttccagcac ttgctcttac attttcaaaa aaaggaatgt ttatcatatc
     1681 atcgtttaag gtttgagatt ccaaatttgt attaggagac gagtaggaga caaaatttgt
     1741 cgacttggag acattactag gagacatatt gagaggcaac ttggagacat ttttaaggtt
     1801 tgttttacta acgaacattt tttcatcact tacgaacgac ttacgaacat ttttatctgt
     1861 tgacttacga acgactaacg aactatcatc tttaaaaaaa tagtcactat ttattttaag
     1921 aatcttagct attctaccaa ctaaaataac accaacatca cttctaccat attcataatt
     1981 ttgtaaagtt ctagctgtaa tacccaattc gttagctaat tgctcttgag aatatccttg
     2041 ttcttctctt gctatgcgaa ttttttttcc tatttccata aattatcctt gacaatacga
     2101 aattattttc gtataattac ataacttttt tggtaatggt aacacaaaaa agcaaaaata
     2161 aaattaaaag gcgtaaaatg aattttaagc aagcaagcaa tcttttaaat ggtgtaaaac
     2221 atttatttga gagtgaaaat tttaatggta aagatgagct tattaagctt tctcttgaga
     2281 agctagaggg atttttggca aatcaaaaaa gtaaagaaat tgctgaaaat gttagtaaat
     2341 gtttcctgaa acacgatact gggaaaaaaa cttataagag tgctttaaaa tctcatactt
     2401 ttaaaggata taaaggtcgt caaattaaag aaagagttga attataatca aaaggatttt
     2461 agatgaaaaa taaacttgta aaaactatga gtgctaaagg tgtaaagctt atgacttggg
     2521 ctaaggctaa gggcttaaat cataaagata taactatact ttatgatttg tctcatggta
     2581 ggattaaggg tataaggggt agagctaaag aattaaaaga aatgctagaa aaagatgggt
     2641 ttaaggtggc ttaaatgtgg gtaaatgcta atattttttg tgataataat tctattggtt
     2701 taaggaattt acaaaaaaaa tcaaaaagag ctattgaaaa taatgaaaaa attttgcaca
     2761 ttgataagaa aatattttcg tatagataca cccaaggcaa aggacacggt ggtaaaaccc
     2821 ttcaaatctg gtctaaacct ttaagcaagg aagaagcaaa gctagtagag caaggtttta
     2881 acatagaaga tataagcaat actactataa ctcctaaaac aacacaagaa tttttaagca
     2941 aagcattaaa tgatgatgtt ttgcttaaaa attctaaagc tttacaagtg caaaacactg
     3001 acaaaaccaa acttagcgaa aatcaaatac aaataaacaa agatagctta agcctctttg
     3061 caaaagccag ttctaaaaag caaaatttag ccttacaaaa agctgctgtg gttaaagaat
     3121 ggctacatgc taaaggcaag ataagcacaa atgattttat aaattacatt aacgctaaaa
     3181 aaatctatga gtttaaactc acacaaaaca aactctttgc ttggcaaaaa gaatacttag
     3241 caaacggact tgatgcttta atagataaaa gagaaaataa aaaagatgat gccattagtg
     3301 ctcttggtat aaaagagctt tttataaata ccttacttgc tcaaaaagga aggcttaatg
     3361 cttctaatat ccacagagtg ctaaattatg aattagcaaa aaatggcaag ttagatttaa
     3421 aagattttct aggcaaaaaa gatgaattta taagctatga gtgtgtttta agaagtatga
     3481 aaaaatactt aaaagaaaac aaacttataa aaaatatcat cttgcatggt gaagatggag
     3541 ctataagcag acatctacca gcacttggtg tgagtaattg gaaagtttct actatcaatg
     3601 aaatcgtaga aattgatgca agtccacttg atgctatttg taaagtagat tttatcaatg
     3661 aaacttatgg gctaaaaggc gatgagtgct cttggcataa acgctacact ataatatcat
     3721 taatcgatac ttatagtggt gtggctagct tttatctagg ctttagtgaa gatagtttaa
     3781 gcatagcaag agccattgca aaatacatca gcacttatgg cgttccaaaa tgcatacact
     3841 cagataatgg caaggcattt ttaagtaaaa atgtcaaagc tcttttagag agattaaaca
     3901 ttgattataa agcgatgcca gcttacagtg gctggagtaa gccttatgta gaaaataaat
     3961 tcaaagattt acaaaactca ctcactgcaa acttagttgg atacatagga tctaatgtta
     4021 aagaaagaca ggccattgag tttttttatt ctaaaaaaga aagaagactt aaaaaaggct
     4081 ataaaactaa tcaaagaaga cttaaaacac ttgagtatat gagagagtgc attgatgatt
     4141 atagtgcgta ttttatgaat aacaaatggc ttgaccgact aggtgccact ccaaaagaaa
     4201 gttttgaagc aaagattagc gatgccatta gtatagatga gcttagcctt agtatgtatt
     4261 taggcggtga attaaaactt agaaaggtgt taaataaagg attaagtctt aatggcactc
     4321 ttttttataa tccaaaatta tacacccatg aagaagtgtt tgtgtgtgaa aatcttaata
     4381 atcaaaatga aatcttttgc tttgataaac aaaaagaact tatttgtgta gcaaacaact
     4441 tagatttaga acttggggta agcattgaag aagctaaagt tgctagaaaa cttgtaaata
     4501 gagccataaa agcaaataaa gacaaaatcg atgagcaaag aatgatttta gaaaagaata
     4561 tggaaaagta tttagctctt ggcaaggaaa aactagaaaa agtcaaaagc ccaaaaacaa
     4621 aagctagtaa caacgctaaa aaagaacttg aattttcaaa agcccttgtt agcaatggtg
     4681 attttgaaca tttgagtaca aaagttataa aagataccaa atgcaaaatt ccaaaatggg
     4741 aaaatgctgc caaaaaggca gggtattaaa agtctttaaa agcttttaaa gtctatttaa
     4801 acacgctttg aaagttttta aaagctttta aaaaagctta aaaacaaaag gatttatatg
     4861 caagaactaa gcaaagaatt agaatgcttt ttagagcaaa gcggtatgaa gccaagtgca
     4921 ttggcaagag cgattggtgc gagtgcttct ttaatctcac agattaaaag tgcaagctat
     4981 aaaggtgatg tggctttatg gagtaaaaag ataagagatt ttatcgctaa tcacaaagat
     5041 aagcaaaatg aaaaacctaa aaaagaacaa ctttttagaa gccgtgattt ttctatggct
     5101 acttttgtaa tgagcgaagc tgtaaatgaa aaagaaatcg cacttatttt tggagaagca
     5161 ggaacaggaa aaaccactat tataaacgag tttattaaaa ccagaccaca aagtatttta
     5221 atagaggcaa cttgtcatac aagtgtgggt gtaatgcttg atgagctttt aaatgctctt
     5281 aaaatcgaag caaatagcaa caatgcttca aaactaaaag caattgcaag atttttaaag
     5341 accaatgaaa agattttaat cgtagatgaa gccgaatatc taccactaaa ggctttggag
     5401 gatttaagac gcattgcgga ttttgctaga gtgcctctta ttttagtagg aactgagatt
     5461 ttatacaaaa acctaatggg taaaaacaaa gagcttaaac aactttactc aaggatttgt
     5521 ggtaaatgga tgatgagagg acttagcaag gaagaaagtg atgagttttt tggcaagggc
     5581 tattttaaat ttagcaatgg taattttaga agctctgcaa agcttttaaa aaaggcctta
     5641 agacttgcag aacttgaaga gtgcgaaata aatgatgagt tattaactag tgcaagcgag
     5701 atggttatat
//
LOCUS       DARGEM010000101         5638 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.101, whole genome shotgun sequence.
ACCESSION   DARGEM010000101 DARGEM010000000
VERSION     DARGEM010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.101"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(107..972)
                     /gene="dcuC"
                     /locus_tag="SFZ78_001428"
                     /pseudo
     CDS             complement(107..972)
                     /gene="dcuC"
                     /locus_tag="SFZ78_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            1387..4340
                     /gene="cas9"
                     /locus_tag="SFZ78_001429"
                     /pseudo
     CDS             1387..4340
                     /gene="cas9"
                     /locus_tag="SFZ78_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes.;
                     frameshifted; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
     gene            4337..5227
                     /gene="cas1"
                     /locus_tag="SFZ78_001430"
     CDS             4337..5227
                     /gene="cas1"
                     /locus_tag="SFZ78_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG8212279.1"
                     /translation="MSYDEAFKTLFISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            5238..>5638
                     /gene="cas2"
                     /locus_tag="SFZ78_001431"
     CDS             5238..>5638
                     /gene="cas2"
                     /locus_tag="SFZ78_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002957400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG8212280.1"
                     /translation="MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRIC
                     KGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLF
                     DIDSHGEFKYKNSNNEEIQINKKQEKYHQQN"
BASE COUNT         2261 a          706 c          928 g         1743 t
ORIGIN      
        1 tagagggttt gattttttca caaaagattt ggatagaact tgcaaaaaac tttcttcaat
       61 atttatactt ttaaattttg atgcaaatcc tattcaatat agcattggca aaataaacta
      121 aaaagcttaa aatagctata ctcaaaagaa ttccaaacca tgcaaaattt cctgttccaa
      181 gatttgaaac cgcgttagta aggatattaa ctccaccaag tgctttaatg cctttagcac
      241 atactccagc ggcgatgatt atgcttacga ctgagataaa aatttcagcc atagcctttt
      301 aaaatcacca tcatatcttc gcctaatttt ctagcatttc tgtgtcttgc aaattcaaca
      361 agaaaaacta aagaaattct tacaaaattt gctatcacaa catcgagctt gatagtaaaa
      421 aaatacgcta taaataaaaa tataacaggt aaccaaggaa agagtgtgta aaaagtaggg
      481 catttaggat caatgatttg cggaaattca acttcatcat ttaaaacacc tttttcttta
      541 tctcttttat caatccaagc aaaataaaaa ggaatcaaga tggcaataat tacaacatag
      601 gtaatcacac tataaatttg gtaatttaaa aaaagcccta cgacattatc actttgtcct
      661 accatatctg ccatattgat tgaatttcca tcttttggat cataatcaag tgcaattaaa
      721 gaaagcgcac atacagttgt aataggacgg attttaagtg agattaaaac aggatacata
      781 catgctaaca aaagcaaaag caattcagca tagctagaaa tgacgatttt taaagccatt
      841 ccaacaacaa aagttccact taaaattaag tatttatttt ttgatttttc ctgagggttt
      901 atttgctaaa aaagcaagtt ttgccgaagc attgatatgt ttcatgtaag cagtaaagcc
      961 tgccacactc atgataataa gccctgctcc agaaagctga cttttaaaag ttgctgtgat
     1021 aaaagataac tatcaagtaa aacatttaaa agcttgtatg ttctctactt ggagcttttg
     1081 gtataggtgt tcctgtgata taaaaagcaa aaataagcaa gataatacct gaaagaaaaa
     1141 atacaaaaat gggattgtat tttttgagta tatcataaaa attagcatag ggtctcttga
     1201 atttacaata aattggattt tatctaaatt tttaaataaa aaatattttt tatttaaaaa
     1261 ttacttgttt tttgtattat aaaattaaca tatatagttt ggttactgaa aagtttatgt
     1321 ttgtttaaaa aaatgatttt tgtattataa ttatacacaa atcataaata ttaaaaagga
     1381 tctagtgtgg caagaatttt ggcatttgat ataggaataa gctctattgg ctgggcattt
     1441 agtgaaaatg atgagttaaa agattgtgga gttaggattt ttacaaaggc tgaaaatccc
     1501 aaaacaggag aatccttagc cttgccaaga cgccttgcaa gaagtgctag aaaacgcctt
     1561 gctagacgca aagcaaggct aaatcactta aaacatttaa tcgcaaatga atttaagtta
     1621 aattacgaag attatcaaag ctttgatgaa ggtttagcca aggcttataa aggatcttta
     1681 attagccctt atgagttaag atttagagct ttaaacgagc ttttaagtaa gcaagatttt
     1741 gcaagagtga ttttacatat tgcaaaaagg cgtggctatg atgatattaa aaatagtgat
     1801 gataaagaaa aaggtgcaat tttaaaagct atcaagcaaa atgaagaaaa actagcaaat
     1861 tatcaaagtg tgggcgagta tctttataaa gagtattttc aaaaattcaa agaaaattcc
     1921 aaagaattta caaatgttag aaataaaaaa gaaagttatg aacgctgcat agcgcaaagt
     1981 tttttaaaag atgaattaaa gcttattttt aaaaaacaaa gagaatttgg cttttctttt
     2041 tcaaaaaatt tgaagaagag gtgcttagtg tagcatttta taaaagggct ttaaaagatt
     2101 tttctcattt ggtgggaaat tgtagttttt ttaccgatga aaaaagagcg ccaaaaaatt
     2161 cgcccttagc ttttatgttt gtagcactta caagaattat caatctttta aacaatctta
     2221 aaaatactga aggaatttta tatacaaaag atgatttaaa cgcccttttg aatgaagttt
     2281 taaaaaacgg cactctaact tataaacaaa caaaaaagct tttgggctta agcgatgatt
     2341 atgaatttaa aggggaaaaa ggaacttatt ttattgagtt taaaaaatat aaagaattta
     2401 taaaagccct aggtgatcat agtttaagcc aagatgattt aaatgaaata gcaaaagata
     2461 ttacccttat aaaagatgag attaagctta aaaaggcttt agcaaaatat gatttaaatc
     2521 aaaatcaaat tgatagttta agcaaattgg aatttaaaga ccatttaaat ataagtttta
     2581 aagccttaaa acttatcact cctttaatgc ttgaaggtaa aaaatacgat gaagcttgta
     2641 atgagcttaa tttaaaagta gcaatcaatg aagataaaaa agatttttta cccgcattta
     2701 atgaaactta ttataaagat gaggtaacta atcctgtggt tttaagagcg attaaagaat
     2761 acagaaaggt cttaaatgct ttacttaaaa aatacggcaa agtgcataaa ataaacattg
     2821 aattagcaag agaagtaggt aaaaattaca gccaaagagc taaaatagaa aaagagcaaa
     2881 atgaaaacta caaggccaaa aaagacgccg aacttgaatg tgaaaaacta ggcttaaaaa
     2941 taaatagcaa aaatatttta aaattaagat tatttaaaga acaaaaagaa ttttgtgctt
     3001 atagtggaga aaagattaaa attagtgatt tgcaagatga aaaaatgctt gaaattgatc
     3061 acatttaccc ttattctaga agttttgatg attcttatat gaataaagtt ttagttttta
     3121 ccaagcaaaa tcaagaaaaa cttaatcaaa ccccctttga agcctttggc aatgatagtg
     3181 caaaatggca gaaaattgaa gttttagcaa aaaatttacc tactaaaaag caaaaaagaa
     3241 ttttagataa aaattacaaa gacaaagagc aaaaagactt taaagataga aatctaaacg
     3301 atactcgcta catcgcaagg cttgttttaa actatactaa agattattta gattttttac
     3361 ctttaagcga tgatgaaaat acaaagttaa acgacacaca caaaggctca aaagtgcatg
     3421 tagaagcaaa aagcggtatg ctaacatcgg ctttaagaca cacttggggc tttagcacta
     3481 aggatagaaa taatcatctt catcacgcca tcgatgcagt aattattgct tatgcaaaca
     3541 actctatcgt aaaggctttt tcagatttta aaaaagagca agaaagcaac agtgcagaac
     3601 tttatgcaaa aaaaattagt gaattagatt ataaaaacaa aaggaagttt tttgagcctt
     3661 ttagtggttt taggcaaaag gttttagata aaattgatga aatttttgtc tcaaaacctg
     3721 agagaaaaaa gccaagtgga gctttacatg aagaaacatt tagaaaagaa gaagaattct
     3781 atcaatcata cggcggaaaa gaaggagttt taaaagccct agagcttggt aaaatccgca
     3841 aagtaaatgg taaaatagtt aaaaatggcg atatgtttag agtggatatt tttaaacaca
     3901 aaaagacaaa taaattttat gctgtgccaa tttatactat ggattttgct ttaaaagtat
     3961 taccaaataa agctgtagca cgaagtaaaa aaggtgagat aaaagactgg attttaatgg
     4021 atgaaaatta tgagttttgc ttttctttat acaaagatag tttgatttta attcaaacta
     4081 aagatatgca agagccagaa tttgtttatt ataatgcttt tacaagctct actgttagtt
     4141 tgattgtttc aaaacacgat aataaatttg aaacgctaag caaaaatcaa aaaatattgt
     4201 ttaaaaatgc aaatgaaaaa gaagtaatcg caaaaagcat aggaattcaa aatctaaaag
     4261 tatttgaaaa atacatagtt tcagcacttg aggaagttac aaaggctgag tttagacaaa
     4321 gagaagattt taaaaaatga gttacgatga agcttttaaa acactgttta ttagctctaa
     4381 tgccaagcta aatttagagc taaatcatct tgtgattaag caagatgaaa atatagccaa
     4441 attgttttta aaagatataa atatcatcgt tttagaaagc ttacaaataa gcattagttc
     4501 cgcacttttt aacgcttttg caaggcataa aatcatcttg ctaacctgcg atgaaactca
     4561 tagtataaat ggtgttttta ctcctttttt agggcatttt caaagtgcaa aaatcgcaaa
     4621 agagcaaatg aatgtaagtg ctcaaaaaaa ggctatttta tggcaaaaaa tcattaaaaa
     4681 taaaatccta aatcaagcct ttatcttaaa aaaatacaat aaaatagagc aaagcaatga
     4741 gcttataaat ttggctaaaa aagtaagctt aaatgatagt aaaaatattg aagctgttgc
     4801 ggcggcgctt tattttaaaa ctttgtttgg tacttctttt tcaagagatg agctttgctt
     4861 tgaaaattct gctttaaatt atggctatgc aatcattagg gcttgtatta ttagagcagt
     4921 ttgcataagt gggcttttgc cttggcttgg cataaagcac gataatattt ataattcttt
     4981 tgcgctttgt gatgatttga tagaagtgtt tagggctagt gttgatgatt gtgttttaaa
     5041 gcttaagggt gaaagtgagt ttttaagcaa agatgacaaa agagcgttga ttggcaattt
     5101 acaaagcaaa atcaattttg atgggcaaaa ttatccttta aacagagcga taaatcatta
     5161 tgtggcaaat tttaaaaatg ctttattgta tgaagatgaa ctaaagatag tgaaatttga
     5221 tgattgaaga taaatttatg cgtgtgcttt tgatgtttga tgtacctact aaaagtaaaa
     5281 aagagcaaaa actagcaagt aaatttagaa ataatcttat aaaattaggt tattttatgc
     5341 tgcaatttag tgtttatatg cgtatttgca agggtttaag ttctgcaaaa agttctattg
     5401 aaaatgtaaa aaagattttg ccaccttatg gaaatgtaag ggctttaatc atcactgaaa
     5461 agcaatttga taaaatggag cttttgcttg gtggcatagt ttttaacgaa aaagttaata
     5521 acgaaaccaa tttaacgctt tttgatatag atagtcatgg agaatttaaa tataaaaatt
     5581 caaataatga agaaattcaa ataaacaaaa aacaagaaaa atatcatcag caaaattt
//
LOCUS       DARGEM010000102         5617 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.102, whole genome shotgun sequence.
ACCESSION   DARGEM010000102 DARGEM010000000
VERSION     DARGEM010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5617
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.102"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..289)
                     /locus_tag="SFZ78_001432"
     CDS             complement(<1..289)
                     /locus_tag="SFZ78_001432"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212281.1"
                     /translation="MQKMYSSAGYYQTKNFTSRLNKHIIEIKNTIMKYAKNTDIFLEI
                     APGRGDLALALSREVSFIYTIDPSKSSSNYDKTKNMKHIQGFFSKKFLDEQV"
     gene            complement(495..1514)
                     /gene="hddA"
                     /locus_tag="SFZ78_001433"
     CDS             complement(495..1514)
                     /gene="hddA"
                     /locus_tag="SFZ78_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG8212282.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLGDDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            complement(1589..2527)
                     /locus_tag="SFZ78_001434"
     CDS             complement(1589..2527)
                     /locus_tag="SFZ78_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HEG8212283.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CSHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYVPDFYIHSASIGEDPDKRDYLVSN
                     AKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV"
     gene            complement(2551..3585)
                     /locus_tag="SFZ78_001435"
     CDS             complement(2551..3585)
                     /locus_tag="SFZ78_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG8212284.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKAGVKLNEETAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLN
                     FSDMGGGIEVRQVEDRMRPIDADYQMFDNGKIKSFIDWKAEIPVRQMLKDLLNHWRNE
                     IKRGRIPLNR"
     gene            complement(3594..4634)
                     /locus_tag="SFZ78_001436"
     CDS             complement(3594..4634)
                     /locus_tag="SFZ78_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEG8212285.1"
                     /translation="MQKNSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLI
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQAMEYLQ
                     KFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKNIVSSNEPHLNVGSGEF
                     LSIKELAFLIKNIVGFKGEIVFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            complement(4634..5179)
                     /locus_tag="SFZ78_001437"
     CDS             complement(4634..5179)
                     /locus_tag="SFZ78_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG8212286.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAVDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHER
                     FIINQDNQKIILVPAGFGNAHYVSSETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGI
                     DWPTNNPILSERDILAMSKDK"
     gene            complement(5179..5586)
                     /locus_tag="SFZ78_001438"
     CDS             complement(5179..5586)
                     /locus_tag="SFZ78_001438"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212287.1"
                     /translation="MKHNNTLLLKLIDKIKYNLCYNGELRLKGTLQYKLGQVFLNIFT
                     KSNIIDVLFFLSRYKKEKKKIELFIQNFNINIPSFEQCYDYSNAKRIEHYLSYNIGKI
                     MIQAHQSWYKGAYFILPYKIYMLYKNFKYKKGK"
BASE COUNT         1823 a         1055 c          676 g         2063 t
ORIGIN      
        1 caacctgctc atctaaaaat ttcttactaa aaaatccttg tatatgtttc atatttttcg
       61 ttttgtcata atttgaactt gatttagaag gatctatagt ataaataaaa ctaacttctc
      121 tagataatgc taaagcaaga tcacctctgc ctggtgcaat ttccaaaaaa atatcagtat
      181 ttttggcgta tttcattata gtatttttaa tttctattat atgtttattc aaacgagagg
      241 taaaattttt tgtttgataa tacccagcac tcgaatacat tttctgcatc tcatttttat
      301 taaaagcaag attttctata taaccacatt tgtcgcactg cgataatttt atactccccc
      361 ccccctagca taattatgta aatgcatgct aggtttttct tgtaaatttt cagcagaaat
      421 aaaaatatta ttggctttaa atataatatt ctcatgatat acttggccgc ataaactaca
      481 tttttgtaaa ttattcatat tctccatgat ttaaccccct cttttgtaaa tgaaaaatct
      541 tgcacataac cttgctcttt gcttaaagct ttgattaggt tgtatttttt agtaggatct
      601 acaaagaaaa acataaatcc acctgctcct gctccactag ttttgccact ataagctcca
      661 ttatctatag ctagtttata aattctttca agctcatcat tgctaacgat ttctgaaatg
      721 attttttttg actgccaaga cttgcctaaa attttcgcca aagtatcaaa atccgcctta
      781 aataaagctt ctttcatctt tatagcatct tgttttatag cgtgcatagc ttcaagggat
      841 ttttcatctc cgagctttcc ttttttatgc tcttctatat cttttgcttc tcttgtgata
      901 tttgtaaaat aaagcacaat tctagcttca agctcactag ctatccagtt tttaatacgc
      961 aaaggattaa cgattactct tttattatca taaaattcca taaaattaaa gccaccaaaa
     1021 gttgcggcgt attgatcttg tgctccgcct actatgccta aatcttctct ttctatctca
     1081 taagcaagct tagcgatttc atattctcct aaaggtagat taagccattc tgcaaaggct
     1141 tttataaccc ctacaaccaa agttgagctt ccgcccaaac cactaccact tggtacatct
     1201 gagtatgtat gcaaagaaaa acttaaaggt ttttttgtaa aatcttttac aatgcgatta
     1261 taaatacttt taaaaatatc taattttcca tcatctccta agaattcttt actttcgtac
     1321 tcagagtaag aatttgtatc aggagaatca aaaatgatct ttccatcttc tctttcgatc
     1381 aaagtgcaat gtatgtataa agatatagtc gcatttaaaa cataacctgt gtatttatca
     1441 caatataaat ttatatcagt tcctccgcct gctagaccga gacgaagagg agtttgtgtg
     1501 cgtatggttt tcatcgaatt cctacttatt ttgctataat ttattataaa aattatagca
     1561 aaatatactt aacttctatt aatatcactt aaacatttgc aaagcgatta actttcatca
     1621 ttttaaatgc tcttaaaagt tcttcaatgc catcttctaa agtattatct ggtttccaac
     1681 ctgtagcctc taatttagca tttgaaacca aataatctct tttatccgga tcttcaccta
     1741 tactagctga atggatataa aaatcaggaa catacttttt aatcgtttca gcaagctgtc
     1801 ttttagtcaa atttgcagaa cttaatccca tattataagc ctgacccttc atcttatcat
     1861 aattctcaat tccatgaata aatcctttaa ccacatcacg aacatgaata taattgcgtc
     1921 taaaatgctc ttcaaaaagc actataaatt tatctttata tgcacgatag gtaaaatcat
     1981 taacaagtaa atcaagtctc attctaggtg aaattccaaa aacagtagcc aaacgaaaag
     2041 ttacacaatt tcctttatca agcaaatatt gctccgcatg cactttatca atcccatatt
     2101 ctgagatagg acgcaaggga gattcttcag tgcacattgc atctttttct cctataccat
     2161 aaccgctatt tgtattggga taaataaata tttgagaagg acttgcaaaa tcgcttatca
     2221 tttttacagc ttcataattg atcattttgg ctaattttgg atttcttttg caaagtggag
     2281 ctccaaccaa agcagctaag ggaataataa tatcagcttt tgctacctct tgtctaataa
     2341 gattttcatc catagcatca ccatttataa aagtaaaatt tttattatga gaacaagata
     2401 aaagagagat ttgatcaaac atcaaattat caatcacaca aacttcataa cctttttcaa
     2461 gtaaaatcgg tgttaaaacc gaacctatat aacctgcacc acctgtaatt aaaacttttt
     2521 ttgacatatt tttcctttaa atcgatggtt ttatcgattt aaaggaattc tgcctctctt
     2581 aatttcattt ctccaatgat ttagcaaatc tttaagcatt tgtctaacag gaatttcagc
     2641 tttccaatcg ataaaactct ttattttacc attatcaaac atttgatagt cagcatcaat
     2701 aggacgcatc ctatcttcaa cttgtcttac ctcaataccc ccccccatat cactaaaatt
     2761 tagcaatata tctataactt caggaagttt aaaggcttct tctcctgcta tattaaaagc
     2821 ttccccacaa ggaacttttc ctttttcact ttcaagagaa agtagataat aagcccttat
     2881 agcatctctg gcatcttgaa aagttcttac gcttgagaga tttccaacct tgataacagg
     2941 ctcttgataa cccgcttcaa ttaaagcaat ttgttttgca actgtgcttt caaaaaacac
     3001 atcagaacgt cttgggccac tatgtgttcc cattcttgta acaaaagtgc gaatgttata
     3061 agcttcgcca taaaatcttc ccaaataatc agtgccaatt ttgcttatac tgtaaggact
     3121 tgcaccgtga aaagctgttt cttcattaag cttaacacct gcttttgctt taccataaac
     3181 ttcacttgaa gagcaaatat gcactacagg gtcatatcca tcttttgcct ttaaaattct
     3241 aatgttttcc aaaatatttg ctgtgcctat tatgttagtc tgtaaagttt ctataggtat
     3301 atcaaaagaa gtttttggat aagactgagc tgctaggtga aaaatcacat caggcctttg
     3361 actctcaaaa agtttttgaa gactagagta atcatttaaa tctgcataaa aaatactgat
     3421 tctatctttt ttattgatcc tatcacttaa atgatagata ttatccatag gttcttgcca
     3481 acgcatcata cctataacat catagtctgt gttttctagc aagaaatctg ccatttgaga
     3541 accaacttgc cctgtaaatc ctgtaattaa tgctgttttt ttcatgattt ttcctattgt
     3601 cttatatttt gctcttttaa ataccattca tacatcatct taatgccatc ttcaagcttg
     3661 atttttgcct tccagcctaa attttgcaat cttgaactgt ctaacattct atccattgta
     3721 gaatctggtt ttgaattgtt aaacacaatt tcacccttaa atccaacaat atttttaatc
     3781 aaaaaagcaa gttctttgat acttaaaaat tccccacttc ctacattaag atgcggttca
     3841 ttagatgaaa caatattttt aaaatctata tttttcatca cataaataga agcatcagct
     3901 aaatcttttg catgaataaa ttccctaatt acactaccac caccccaaat ttctacgcta
     3961 tctttactta caccaaattt ttgtaaatat tccattgctt gctctaagga attcatttgc
     4021 aaatccttta aaacctcatc aattttattt tcatctaaaa gttttgctaa atgaaatttg
     4081 cgaagcaaag ctggtaaaac ttttgctttt tgtaaatcaa actcggttgt ctctccatac
     4141 aaatttgcaa gatacaaagt gataaaattt gttccatatt gcaaattata actttcgcac
     4201 atttttgttc ctataatttt tggtaaacca tatgcaacgg cttttaaatc tagctttcca
     4261 tctaataaat tctcttcttt aatgggattt atagcttttt gagggtaagc ccaagcagaa
     4321 ccataaaaaa ttagcttttt aacattattt tgataagatg aatgaatgat atttgcttga
     4381 agtacgctat tttcatagat tacatcggct ggagtaaaaa gccctaaagt atcaagcttg
     4441 gcagcacata aaaaaacata ttctggtttt tcttttgcaa aaaaatcagt cacagctttt
     4501 tgatctacta aatctaattc ttttcttgtt tttacgataa tattattaaa accctcatct
     4561 ataagtgtat tataaagagt ttttcctaag gtaccaccat gtcctgctat gtaaattttg
     4621 gaattttttt gcattattta tccttactca tagctaaaat atcacgctcc gaaagaatag
     4681 gattattagt aggccaatct atgcctattc tttcatcatt ccatgcataa gtaaattgat
     4741 caggagcatc catatactct cctaaataag cacatttata ataataaact gcagtttcac
     4801 tactaacata atgagcattt ccaaaacccg ctggaactaa gataattttt tgattatctt
     4861 gatttatgat gaatctttca tgctttaaat aagttgggga atcttttctg caatcaacca
     4921 caacttgatg cacttctcca tagacacaag tggctaactt ataagttttt acatcaccat
     4981 ggataccgcg aataacatta tgtttagaat gtatgaattt atcgtgtata aattttaatc
     5041 catttggcaa gagtttatct acagcctcgc ttgtaaaagc tgtccaaatt tcacctctta
     5101 aatctctaaa tttgttagga gttatgatat acactccttt taaaattttt gattcttgta
     5161 tatcaaattc tattgccatt attttccttt tttgtattta aaattcttat aaagcatgta
     5221 tattttataa ggcaaaataa aataagctcc tttataccaa gactggtgag cttgaatcat
     5281 tattttacct atattataag ataaatagtg ctcaattctt tttgcattgc tataatcata
     5341 acattgttca aatgatggaa tattaatatt aaaattttga ataaataatt ctattttttt
     5401 cttctccttc ttatatcgac ttaaaaaaaa taaaacatct attatattac ttttagtaaa
     5461 aatatttaaa aacacttgtc ctaatttata ttgcaaagta ccctttaatc taagttctcc
     5521 attataacat aaattatatt ttattttatc aatcaatttc aataaaagcg tattgttatg
     5581 tttcatactt attaactcat ctagatattg caaggca
//
LOCUS       DARGEM010000103         5615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.103, whole genome shotgun sequence.
ACCESSION   DARGEM010000103 DARGEM010000000
VERSION     DARGEM010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.103"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            14..193
                     /locus_tag="SFZ78_001439"
     CDS             14..193
                     /locus_tag="SFZ78_001439"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212288.1"
                     /translation="MSKRNGALRAFKTLLKDVLNDENGFYKHKNGKVNIAKLSRVSGL
                     SRSFLKKELYIRGLL"
     gene            190..618
                     /locus_tag="SFZ78_001440"
     CDS             190..618
                     /locus_tag="SFZ78_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212289.1"
                     /translation="MSPKQAMLRKQLLAKIHMHKEYLYYKENNAWQDFLALRFEVLSS
                     KDLSIDELKILLDIFDGKIKDDVNFTPDFKGRLMLKKASSNKQFFYLKALLKQTKMPI
                     FSFYKLCKKTLKKDIYSLQTLSKKDCTIMLVVLEKIAKTK"
     gene            670..861
                     /locus_tag="SFZ78_001441"
     CDS             670..861
                     /locus_tag="SFZ78_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212290.1"
                     /translation="MICPRCANEKTKVLKTIKSDTNERFRRCLKCGYTFMSIELIKVD
                     NWAKYYIKETQKGLFDEAL"
     gene            848..1327
                     /locus_tag="SFZ78_001442"
     CDS             848..1327
                     /locus_tag="SFZ78_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HEG8212291.1"
                     /translation="MKRFELKGLENFLKKCENLEKEQKQIILKEIIAETLYKESKENL
                     EKEQDSNAKKWAPLKQSTLNSRKAQKIMHTKKLFATGSMQSSLHSGVENDRAFVALNA
                     TYKGFAYASVHQFGSKNVIARPFLPIDENLNINKRVARAMEEETKDMLWTLFKQTLK"
     gene            complement(1466..2599)
                     /locus_tag="SFZ78_001443"
     CDS             complement(1466..2599)
                     /locus_tag="SFZ78_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212292.1"
                     /translation="MSNIFNKSVDEAYSYLENKGLKISFKYHEIKKQAHDRAFSAAGI
                     MKTDVLNDLHEELKKAMKEGRNFNEFKNNLKELLTSKGWYGKKEITNPKTGEKRTINI
                     NANRLKTIYHTNMQSAYAKARAKQLSTYSYKTYWVYKCALLEDSRSEHKKMHNCAIHR
                     DDPFWKTSFPPNDYNCKCKVIAVSEKEARAKYKILENPKSIASKNFAYDKRENSQIPK
                     ETRISLDESLENLPKIQNYENLSDKELIDKVYEAFNVKKGDLLVDKIGDVISLDDDFF
                     YDKKKQTTKIKKQNRHFYLDYFPKLINDPDEIRLSMDADPRFKGFTKKTYIKYFYDNG
                     VKALVMVLNQKGNQINNKTMFLSEDNSYFKEILNQGKTIYKKQ"
     gene            complement(2592..3974)
                     /locus_tag="SFZ78_001444"
     CDS             complement(2592..3974)
                     /locus_tag="SFZ78_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HEG8212293.1"
                     /translation="MRILNKTARKSVASSVDFDSIIAALNSENFSELISIYDYFKRFD
                     PQIASEVMKRRFKMCSFPMFITCKDETQRIFLQNYISKSDFRKFVFEMSAAVVYGFAA
                     FLLEWKVKDLNVFPKLKYISPRFFSMDDKERLFIYNESKKLFVDECDDIFLHLHPSDS
                     GSFIEQSLFYNVVSIAVLKQLAMSKNISYLDNLSVPPIIAKTTNANSDKEIEELLMQL
                     SNLRSASVGIFNKDDMVELLNSGLSTSTFTDFLRYCDEAISKLISGQVLAGNAVQNGT
                     QALGNVHEEVRLNVGEMDTLFLSKSIQKLLEQILKLNFAKPAEFEFVFDTNKEVDEQY
                     LAGVYSTISSMGYEIPAEFLAKTFRIEGLKKKEVSTENYAFNSLMLEKNNRLSKDKIE
                     LNSSAEDEISDEIYEKIKAFWEECQSYEELEERIFKEYPNISFEKLKESLDKKIALAS
                     MQALLDTGNE"
     gene            complement(3971..5497)
                     /gene="terL"
                     /locus_tag="SFZ78_001445"
     CDS             complement(3971..5497)
                     /gene="terL"
                     /locus_tag="SFZ78_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006802512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEG8212294.1"
                     /translation="MDKLEINEIKSRLKALKFNHKEDKNLRRDRILKQGFKAFVFEYF
                     PHHINFIKKESSNFRNFIYDNIDELEKKNNHLCFKAYRGSAKTTLLVRLFTLYSLLSN
                     KKQYALIISSTLDIASESIASLKTELEENAKLINDFEIKLGDEWTSEAIVFTSFKIHK
                     KIKAFGSGKKIRGTNYLGKRPDLIICDDIENDENVESKTQRDKLYKWFNKAILKLVAR
                     TQENYLYLVVGTILHQDSLLNRLNDDKRFLIYDFPLVLSFPDKLDLIDKNNILKSDLK
                     GFKLDDENLNKIEILKEYFADTQSFFSEYQNKALSTENAIFSEYKIIEKEQDFDLVVL
                     GIDPALGKAKGDYFAIAELKKVDKNKFHLKASGYKISPSKMIDVILKLYIKYLSLGKI
                     VKIAIETIAFQEFFKDKLKEEALKLGIILSICELKNKVAKELRIDSLAPYINDGTILI
                     DNNSNLLIEEMLTYPKAAHDDLLDASEMAFRIACSAANADYKAINRILSKRKIKKGFL
                     "
BASE COUNT         1879 a          873 c          728 g         2135 t
ORIGIN      
        1 aaggaaagaa aagatgagta aaagaaatgg tgctttaagg gcttttaaaa cacttttaaa
       61 agatgtttta aatgatgaaa atggctttta taaacacaaa aatggcaaag taaatatagc
      121 caagctctct cgtgtaagtg ggcttagtag aagcttttta aaaaaagaac tctatataag
      181 aggtttgcta tgagtcctaa acaagcaatg ctaagaaaac aacttctagc taaaatacac
      241 atgcacaaag agtatttata ttataaagaa aataatgctt ggcaagattt tttagcttta
      301 agatttgagg ttttaagctc aaaagattta agcatagatg agcttaaaat cttgcttgat
      361 atttttgatg gtaagattaa agatgatgtg aattttactc ctgattttaa gggcagatta
      421 atgcttaaaa aagctagttc taataaacaa tttttttatt taaaagcttt attaaaacaa
      481 acaaaaatgc ctatttttag tttttacaaa ctttgtaaaa aaactttaaa aaaagatata
      541 tactcacttc aaactcttag caaaaaagac tgcactataa tgcttgtggt tttagaaaag
      601 attgctaaaa ctaaataaaa taattaaaaa tagatataat cctttaaaag cttttttaaa
      661 ggatttattt tgatctgccc tagatgtgcg aatgaaaaaa ctaaagtctt aaaaactata
      721 aaatcagata ccaatgaaag atttagaaga tgtcttaagt gcggatacac ttttatgtct
      781 attgaactta tcaaagtaga taattgggca aaatactata taaaagaaac tcaaaaagga
      841 ctttttgatg aagcgctttg aattaaaggg tcttgagaat tttttaaaaa aatgtgaaaa
      901 tctagaaaaa gaacaaaagc agattatttt aaaagaaata attgctgaaa cactttataa
      961 agaaagcaaa gaaaatctag aaaaagaaca agactctaat gctaaaaaat gggcaccttt
     1021 aaagcaaagt acattaaatt caagaaaagc acaaaagatc atgcatacta aaaagctttt
     1081 tgcaacaggc tctatgcaaa gctctttaca tagtggagtg gaaaatgata gagcttttgt
     1141 agcacttaat gccacctata aaggctttgc gtatgcaagt gtgcatcaat ttggctctaa
     1201 aaatgtaata gcaagacctt ttttacccat cgatgaaaat ttaaatataa acaaaagagt
     1261 agccagagca atggaagaag aaactaagga tatgctttgg actttgttta agcagacttt
     1321 aaaataagat tttttataat gtctaaaagt caatcattat gccctttggt cgctttaagc
     1381 gatgtttgga tagactagat tttatctaaa ccaaaaccca gatgcgacgc gggaacatca
     1441 tgctcagggc ttagtcgctg attgattatt gttttttata aattgttttc ccctgattta
     1501 aaatctcttt aaaatagcta ttatcttcac ttaaaaacat ggttttatta ttgatttgat
     1561 tgcctttttg atttagcacc atcacaagag cttttactcc attatcataa aaatacttaa
     1621 tataagtttt tttagtaaag cctttaaatc tagggtcagc atccatactt aatctaatct
     1681 catcagggtc attaataagc tttggaaagt agtctaagta aaaatgccta ttttgttttt
     1741 tgattttagt agtctgcttc tttttatcat aaaaaaaatc atcatctaag cttattacat
     1801 ctcctatttt atcaacaagc aaatctcctt tttttacatt aaaagcttca taaaccttat
     1861 ctattaattc tttatcactt aaattttcat aattttgtat ttttggtaaa ttttctaagc
     1921 tctcatctaa gcttattcta gtttcttttg ggatttgtga attttctctt ttatcataag
     1981 caaaattttt agaagcaatg ctttttggat tttctaaaat tttatattta gcccttgctt
     2041 ctttttcgct tactgctatg actttacatt tgcaattata atcattaggc ggaaaggatg
     2101 ttttccaaaa tggatcatct ctgtgtatag cacaattgtg cattttttta tgctcacttc
     2161 ttgaatcttc taaaagtgca catttatata cccagtaagt tttgtaagaa taagtgctaa
     2221 gctgttttgc tcttgctttt gcgtaagcac tttgcatatt ggtatgataa attgttttta
     2281 agcgatttgc attgatgttt atagtgcgtt tttctcctgt ttttgggttt gttatttctt
     2341 ttttaccata ccaaccttta cttgttaaaa gctcttttaa attgttttta aactcattaa
     2401 aatttcttcc ttctttcata gcttttttta attcttcgtg caaatcattt aatacatctg
     2461 ttttcataat gcctgctgca ctaaaagcac gatcgtgtgc ttgtttttta atttcgtgat
     2521 atttaaagct tatttttaag cctttatttt ctaaatagct ataagcttca tctacgcttt
     2581 tgttaaaaat attactcatt tccagtatcc aaaagagctt gcatggaagc aagagcgatt
     2641 tttttatcca gactttcttt taatttttca aaactgatat ttgggtattc tttaaaaatt
     2701 ctttcttcta attcttcata gctttgacat tcttcccaaa aggctttgat tttttcataa
     2761 atttcatcac ttatctcatc ttctgcactt gagtttaatt ctattttatc cttgctaaga
     2821 cgattatttt tttctaacat taaagagtta aatgcgtaat tttcagtgct tacttctttt
     2881 ttctttaaac cttcaattct aaaagttttt gctaaaaact cagcaggtat ctcataaccc
     2941 atactagaaa tagtgctata aactcctgct aagtattgct catcgacttc tttgtttgta
     3001 tcaaaaacaa actcaaactc agctggcttt gcaaaattaa gttttaaaat ctgctctaat
     3061 aatttttgta tgcttttgct taaaaaaagt gtatccattt cacccacatt aagacgcact
     3121 tcttcgtgta cattacctaa ggcttgagta ccattttgca ctgcatttcc tgctaaaact
     3181 tgtccgctga ttaattttga aatagcttca tcacaatacc ttaaaaaatc tgtaaaagta
     3241 gaagtagaaa gccctgagtt taaaagctcg accatgtcat ctttgttaaa aattcccaca
     3301 cttgcacttc ttaaattgct aagttgcatt aaaagttctt ctatttcttt atcgctgttt
     3361 gcattggttg tttttgcaat gataggtggc acacttaaat tatcaagata agaaatgttt
     3421 ttactcatag caagttgctt taaaactgca atgcttacaa cattataaaa aagggattgt
     3481 tctatgaatg aacctgaatc gcttggatgt aagtgtaaaa atatatcatc acactcatcc
     3541 acaaaaagtt ttttactttc gttataaata aatagccttt ctttatcatc catcgaaaaa
     3601 aatctcggac ttatgtattt tagttttgga aaaacattta aatcttttac cttccattca
     3661 agtaaaaaag cagcaaaacc ataaactact gcagcactca tttcaaagac gaatttccta
     3721 aaatcacttt ttgatatata attttgtaaa aatattcttt gagtctcatc tttacaagta
     3781 ataaacatag gaaaagaaca cattttaaaa cgccttttca ttacttcaga ggcaatttgt
     3841 ggatcaaagc gtttaaaata atcataaata cttataagtt cactaaaatt ctcactattt
     3901 aaagcagcga ttatgctatc aaaatcaaca ctacttgcta cgctttttct tgctgtttta
     3961 tttaatattc tcataaaaat ccttttttaa tctttctttt gctaagtatt ctattgattg
     4021 ctttataatc tgcatttgct gcactacaag cgattctaaa agccatctca cttgcatcaa
     4081 gcaagtcatc atgtgctgct tttggatagg ttagcatttc ttcgataagt aaatttgagt
     4141 tattgtctat taaaatcgtg ccgtcgttaa tgtaaggtgc taagctatcg atgcgaagtt
     4201 cttttgcgac tttattttta agctcacaaa tacttagaat aattcccagt tttaaagcct
     4261 cttctttgag cttatctttg aaaaactctt gaaaggctat tgtttcaatg gctattttta
     4321 ctatttttcc taagcttaag tatttgatat aaagctttaa tatcacatct atcatcttgc
     4381 taggagatat tttatagcca cttgctttta aatgaaattt atttttatct acttttttaa
     4441 gctcagcaat ggcaaaataa tcgccttttg ccttaccaag tgcagggtca atccctaaaa
     4501 ccacaaggtc aaaatcttgt tctttttcta tgattttata ctcgctaaaa atagcatttt
     4561 cagtacttaa tgctttgttt tgatattcgc taaaaaaact ttgagtatca gcaaaatatt
     4621 cttttaaaat ttctattttg tttaaatttt catcatctaa tttaaaaccc tttaaatcgc
     4681 tttttaaaat attgttttta tcgattaaat caagtttgtc aggaaagctt agcacgagcg
     4741 gaaaatcata aattaaaaag cgtttatcat catttaaacg atttaaaaga ctatcttgat
     4801 gtaaaatagt tccaacgact aagtataaat aattttcttg tgttcttgcg actaacttta
     4861 aaatggcttt attaaaccat ttataaagtt tatccctttg cgttttactt tctacatttt
     4921 catcattttc tatatcatca cagataatta aatcaggtct tttgccaaga taattcgttc
     4981 ctcttatctt tttaccacta ccaaaagctt taattttttt atgtatttta aaacttgtaa
     5041 aaactatggc ttcactagtc cattcatcgc ctagttttat ttcaaaatca ttaattaatt
     5101 tagcattttc ttcaagctct gtttttaaac ttgctatact ttcacttgca atgtctaaag
     5161 tagaagatat aattaaagca tattgctttt tattacttaa aagcgagtaa agagtaaaaa
     5221 gtcttactaa aagcgttgtt ttagcacttc cacgataagc tttaaaacaa agatgattat
     5281 ttttcttttc taattcatca atattatcat agataaaatt tctaaaatta gagctttctt
     5341 ttttgataaa attgatatga tgaggaaaat attcaaaaac aaaagcctta aagccttgtt
     5401 ttaaaatcct atctcttctt aaatttttat cttctttatg attaaatttt aaagccttta
     5461 gccttgattt aatttcattt atttctaact tatccatttt tgctttcttt ttattttcaa
     5521 atatagtttt aaaaagcttt aaattgcgtt taaaaccttt taaaatacaa gggtcaatat
     5581 aaagccttac aatttatcta attttttatt tataa
//
LOCUS       DARGEM010000104         5440 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.104, whole genome shotgun sequence.
ACCESSION   DARGEM010000104 DARGEM010000000
VERSION     DARGEM010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.104"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1244
                     /locus_tag="SFZ78_001446"
     CDS             <1..1244
                     /locus_tag="SFZ78_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEG8212295.1"
                     /translation="IRIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKE
                     NTLFKKQEQILQNYAFKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQS
                     KALKIACDIPTNLGFYPCFKADITLCMGALKEILLEDFAKEFVGRIKIANLGIRSKKF
                     YPNSQAFLLEKKDLKTIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLV
                     AQKSFSPLLMLKEKIENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLW
                     YLNRKDVVITPHPKEFIKLYKMCFDEDLDIETLQKNRFFYARKFSQNYDCVLVLKGAN
                     PIIVQKEKLFVVNLGNQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAK
                     KYKFNKNSFDALKLIKGLKCL"
     gene            1235..1801
                     /gene="purN"
                     /locus_tag="SFZ78_001447"
     CDS             1235..1801
                     /gene="purN"
                     /locus_tag="SFZ78_001447"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG8212296.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            1873..2592
                     /locus_tag="SFZ78_001448"
     CDS             1873..2592
                     /locus_tag="SFZ78_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG8212297.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            2585..2794
                     /locus_tag="SFZ78_001449"
     CDS             2585..2794
                     /locus_tag="SFZ78_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG8212298.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            2804..3988
                     /locus_tag="SFZ78_001450"
     CDS             2804..3988
                     /locus_tag="SFZ78_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG8212299.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(4001..5359)
                     /locus_tag="SFZ78_001451"
     CDS             complement(4001..5359)
                     /locus_tag="SFZ78_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG8212300.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
BASE COUNT         2011 a          748 c          864 g         1817 t
ORIGIN      
        1 aaattcgcat tcaacgcaag attagaaaag taaaaatact ttttttatta ggcgggggta
       61 acaacgcttc agatggcttg gtggctttaa gaaatttaaa acacgctaaa gcttataaaa
      121 taggctttaa agaaaatacg ctttttaaaa aacaagagca aattttacaa aattatgctt
      181 ttaaattttg taaaaaagaa cccaatttta aaaaatttca tattatcatt gattgtattt
      241 taggtacagg ttcaaatcgt tgtttagatg aaaaaacaag tttaattatt caaaaagtta
      301 atcaaagtaa ggctttaaaa atagcttgtg atatacctac aaatttggga ttttatcctt
      361 gttttaaagc tgatattaca ctttgtatgg gagctttaaa ggaaatttta cttgaagatt
      421 ttgctaagga atttgtagga aggattaaaa tagccaattt aggcattaga tctaagaaat
      481 tttaccctaa ttctcaagct tttttgcttg aaaaaaaaga tttaaaaact atagatagaa
      541 aaatcaacgc caataaagga aattttggcc atatttatat agttgccaat gcaagtgctg
      601 gaactttagc aggacttgga gccttaaatt ttggagcagg tcttgtttct ttagtagcac
      661 aaaaaagttt ctcgcctctt ttgatgttaa aagaaaaaat tgaaaataat gcaagtgcta
      721 ttgctttagg tatggggctt gaaaatttgg attttctaaa agatgaaatt ttgcaaaaca
      781 ctcctttgat cttggatgca aactgctttt taagtgaagc tttgctttgg tatttaaaca
      841 gaaaagatgt tgttataacc cctcatccaa aagaatttat aaaactttat aaaatgtgct
      901 ttgatgagga tttagatata gaaacattgc aaaaaaatcg ctttttctat gctagaaaat
      961 tttcgcaaaa ttatgattgt gttcttgttt taaaaggagc aaatcctatt attgtgcaaa
     1021 aagaaaaatt atttgttgta aatttaggaa atcaagcctt agctaaaggt gggagtggag
     1081 atgttttaag tggaatgatt gctgcacatt taggttttgg ttttagcgct ttagaagcag
     1141 caaaaaatgc tactttagct catggacttg ttgcaaaaaa atataaattt aataaaaata
     1201 gctttgacgc tttaaaactt atcaaaggat taaaatgctt gtaaaattag ctgtactttt
     1261 tagtggaaat ggaagtaatt tagaaaatat tttagaaaaa cttcataaaa aaaccatagg
     1321 ggaaaatacc tatgaagtag tactttgcat ttgtaataaa aaagatgctt ttggtgtaca
     1381 aagagcaaaa aaatttggtc ttgatactgt cattgttgat cataaggctt ataatactcg
     1441 tgaagaattt gatacgattt tggtacaaaa aatcaaagaa agtggagcaa atcttactgt
     1501 attagcaggt tttatgagaa ttttaagtcc tgtttttaca aaaaatatta aggcaattaa
     1561 ccttcatcct tctttattac ccctttttaa aggagcacat gcgattaaag aaagttatga
     1621 aagtgatatg aaagtggctg gagtcagtgt gcattgggtc agtgaagaac ttgatggtgg
     1681 aatgattata gctcaaaaag cttttgaaaa aagaaatttg agttttgaag aatttgaaga
     1741 aaaaattcat agtctagaac atgaaatttt acccttaagt gtgattgaaa ttttttctta
     1801 aagaattaaa ggtatttgct ttaaaactat aaaatatcgc tttaaaaaat tttaaaattt
     1861 tcaaggaaat ttatgtttga atggatattt agtattgatg cttggattac tttagctact
     1921 ttaagtgctc ttgaaattgt actagggata gataatatca tttttttagc tattttagta
     1981 agcaaactac cccctgaaca tcgtgataaa ggacgtatct taggtttagc ttttgcaatg
     2041 attacaagaa ttttacttct tttatctctt ttttgggtaa tgaaacttgt aacacctttg
     2101 tttagtgtat tgggcaatga aatttcagga agagatctag ttcttttact aggtgggctt
     2161 ttcttgattg taaagtctat taaagaaatt aaagagcaaa tttctcatca agaagaaagt
     2221 caaagtcatt ttaaagcaag caataaactt tggatagttg tagctgaaat tgctgtgatt
     2281 gacatagtgt tttcgcttga tagtgttatt accgcagtag gaattgctca agatgtaacc
     2341 atcatgatta tcgctgttat tatcgcagta gctgtgatgc tttttgcttc taaacctata
     2401 gcagattttg ttgaaaaata tccaagcatt aaaattttag ccttagcttt tttggtgcta
     2461 ataggcgtag ttttagttgc tgaaagtttt gatattcata ttgataaggc atatatttat
     2521 accgctatgg cttttgcttt agtggtgcaa attttaaata ttttagatca aagaaaggaa
     2581 aaaaatggct aaagacacta atggaataga acttaacaca ggtgatagcg tgagtgtaat
     2641 aaaagatctt aaggttaaag gtgcaagtac aactttaaaa cgtggaacta ctataaaaaa
     2701 tattaagctc acttctaaag aaggtgaaat tgaggctaga gtagataaat ttggcgttat
     2761 tgttttaaaa actgaatttt taaagaaaat ctaggcaaag aatgtgcgaa tcttacttgt
     2821 tttaagaggg aattattacg caggacaaga agaatttatc aaaaataata aacttcaaaa
     2881 ttatacactt gatttaaatg ctttgcgtct tttatcagga agcgttaaaa atatagtcag
     2941 tgaatataaa attttaaatg ttaaaaatga tgaagatttg agtaaaattt tactcaaact
     3001 tctagaaatg cgtatgcaaa aaggtgagtt tagcatcata aacgcttaca acgaaacatt
     3061 aaaaatttat aaagacttag ctaaacaata tcgctataaa atatatgtta ttgtttttga
     3121 tagctcttta aaacaatgtc aagaaaaaaa tcttttagaa gctaaaaaaa atggatatat
     3181 cattccttat gctcttttgg aaaaaactca agatttgctc aaaaaaaatc caaaaaaata
     3241 cccaatttta gactcaagag actggaaaaa atgtctttac caaatgccaa atttaagcaa
     3301 atacaaaaaa attcatcata taggagattt acaaggttgc tatagtgttt taaaagaata
     3361 cattaaaaca atcaaagaag atgaatttta tatatttttg ggagattata tcaacagagg
     3421 tatagaaaat ggcaaagtaa taaaatttct tttaaaaatt tgcgaaaaag aaaacgtatg
     3481 cttattagaa ggaaatcacg aaagacatct tataaaatgg gctaatggag aattgtcaaa
     3541 ttccaaagaa tttaatgaaa atactttaaa ggattttaga aaagaaaaac ttactccaag
     3601 agatgctaga aaactctatc ctcatctaaa agaatgttta tactacaaat tccaaaataa
     3661 attcatattt tgttcacatg gaggagtaaa ttttataccc tccaaacctg aaaaaataag
     3721 ttttatacca agccatgact ttatttatgg tgtaggtgga tatgaagaca gtcaaaaagt
     3781 agcaaatcaa ttttgtaatt tcacctcgga caatctttat caaatctttg gacacagaaa
     3841 taaagaaaaa cttcctatga aaatagccaa aagagtattt ttatgcgagg gtaaaataga
     3901 tgatggtgga tatttacgcg tagttacact agatgaaaaa ggttttgagt gtatagaaat
     3961 taaaaaccaa atttacaaaa agaaataagc ctaaagaggc ttattcttca tctttatttg
     4021 tttttttaac caccttaaca cgctctatag aattcccatc cattttttta acttcatagt
     4081 aacaaagttc atcttcaatg cgatctccta ccataggcaa gcgtcctaaa agattaaata
     4141 cataaccacc tatagtaact tgttctaaat cctcatcata gtttattaca agcatttctt
     4201 caacagtttc tatatcgcat cgtccttgaa attcatagat attttcagca agttttttat
     4261 agctgtcttc ttcatgctcg cttttaattt cgccaataat ttcttccatg atatcttcca
     4321 tggttaaaat tccagcagtt ccaccatact catcaactac taatgcagta tgagagcgtt
     4381 ctttattcat cattacaagt acttttgaaa tgctgatatt ttcaggaacc aaaatcaaag
     4441 gtttaacaaa agtatctaaa ttttgacttt tatggtttaa ttcattttgt attatatctc
     4501 gtatgtgtat catacctaaa atagtatctt tagagccatc aatataagga aagcgagtat
     4561 gtttatgctc acaaatgatt tgcatatttt cttcgtaact tttttgttta tttagacaaa
     4621 tcatatcttt tctaggagtc ataatctctt tagcaacagt atctgaaaaa tcaacagcat
     4681 tgcgtatgat ctctgtttca aattcatcta aaactccacc tttttgactc tcacttgcta
     4741 tgattttaat ttcttcttcg ctatgagtta gctcgctttc tttagcaggt tttattccaa
     4801 aaagtttcaa acttatagct gctaaaaaat cgaaaatttt aatacaaggc aaaaagagca
     4861 tccaaaacca atgaagcggt ctagctataa ataaaaccgc tttatctgca actgcaatag
     4921 ctatactttt tggcacaagt tctcctaaaa ccacatgtaa aagagtaata atgctaaaag
     4981 caataatgaa agctatagta tggataataa cagtgctaaa accaagatta ataagcggaa
     5041 tttctagcat ttttgcaata gcaggctcac ctatccaacc aagagctaga gaacttaaag
     5101 taattcctaa ttgacaagca ctaagatatg tatcaagcct tgaagtaacc tccaaagctt
     5161 tcttggcacc agcttttttt tcttttacca tctcttcaag cttggaacga cgtactttaa
     5221 caatactaaa ttcagacaaa acaaaaaaac catttaaaaa cactagagca agtgcaacaa
     5281 caaccataag catagaatat cctgcatcaa aagatgctgt agaagtttgg tttaaatcca
     5341 aaacctgact ggggtccaat gaagctcctt aagaaataaa atattattaa accttattat
     5401 acacaattaa aagtaaattt aatatttgaa ttttttcttg
//
LOCUS       DARGEM010000105         5339 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.105, whole genome shotgun sequence.
ACCESSION   DARGEM010000105 DARGEM010000000
VERSION     DARGEM010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.105"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(92..502)
                     /locus_tag="SFZ78_001452"
     CDS             complement(92..502)
                     /locus_tag="SFZ78_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG8212301.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(509..1252)
                     /gene="fabG"
                     /locus_tag="SFZ78_001453"
     CDS             complement(509..1252)
                     /gene="fabG"
                     /locus_tag="SFZ78_001453"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG8212302.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1324..2802)
                     /locus_tag="SFZ78_001454"
     CDS             complement(1324..2802)
                     /locus_tag="SFZ78_001454"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG8212303.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGGGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDASPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLIEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDKKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2882..3943
                     /locus_tag="SFZ78_001455"
     CDS             2882..3943
                     /locus_tag="SFZ78_001455"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG8212304.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWMENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3943..5151
                     /locus_tag="SFZ78_001456"
     CDS             3943..5151
                     /locus_tag="SFZ78_001456"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG8212305.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQEAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYEKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVTILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYEPLNSFVMEKNKLEEIKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         1760 a          955 c          723 g         1901 t
ORIGIN      
        1 atgattatac cttaaaaaat aacaaaaagt taatattaat taagataata tttatcttaa
       61 ttaatatata gttaataaaa ttatcaaatc attaagcctt aaaaagctta aattctccat
      121 tcataaattg cattctagcg cttaaatgat caagataaaa aacttcaaat tttggatttt
      181 gcggagtttc ataaagattt acaagataag gatatttttt aaacatcatt tttttaactt
      241 ctaaatttgg ttcaaaaacc gcattagctc taagtcttaa aaaagtccca tcttttgcac
      301 aagaacaaaa ttcaatacca ttataatttt ttatatgctt aaaaagtcct tttgtatttg
      361 ctgtgcaaaa ataaatttta tctcccacaa gcaatggact ttgtatagga cgcactctag
      421 gatttccaca agttcctaaa gtggctaaaa atgctggtgc attatcatct aaaaattgtg
      481 ctatttcttt taaatccatc atttctcctt acatatataa accaccattg atcttaagca
      541 catcgcctgt cacataagag gcataatcac taagtaaaaa cgctacacaa ttagccactt
      601 cttcaggttc tgcaaagcgt tttaaaggga tattgtcttg ataggtttgt ttgatttcat
      661 cacttaaaac ttcagtcata tcgcttttta tgaaacctgg agtcacacag ttaaagcgta
      721 aatttctact tgctccttct ttagcaaaag atttagtcat agctatcatt ccacctttac
      781 tagcagaata atttacttgt ccagcattac ccatttctcc gacaatagaa gcgatattta
      841 caacagcacc aaagcgtttt ttactcatgg tttttaaagc ttctctacaa cctaaaaaag
      901 ctgagcttaa attcgtatcc acaacgccac taaagtcctc taatttcatt cttaaagcaa
      961 gtttatcatt tgtaacgcct gcattattta caagataact taattctcca tcactctcaa
     1021 ctatagtttt tacaccgttt tcaaactcat cttctttgct tgcatcaaat ttaatcacag
     1081 cagcaacgcc accacttgca ataatttcat cttttaaagc atctgcaagt tcaggttttg
     1141 aacgataatt gatccaaact ttaagtccaa aacccgccaa agtttttgcg atagaagcac
     1201 ctattccctt acttgctcca gtaattaaaa cattttttcc actaaatttc attatctatc
     1261 cttaataagt ttaattttaa aaattgcaat cttaacaaat ttcttataaa aaaggcaaac
     1321 aaactaaaat aaagcctcat tcatttcttt tggaatttct aagtctaaaa ttttaagcac
     1381 gcttgcagcg atattgctaa gccccatatt atctttaatc tttgaaactc cctttgcttg
     1441 cacaaaaaca aaaacatcaa aagtggtgtg attggtaagc aaatttcctt tttcatcttg
     1501 catagcctcg caatttccat gatcacttgt aatgataaaa gcataatcat gcttttttgc
     1561 acattctata atctcgccca aacaagtatc caccgcttcg acagccttta tagcagcatt
     1621 aaaatcacct gtatgtccaa ccatatctcc atttgcaaaa tttaccacta taaaatcctc
     1681 acccttttct atgccttttt tcactgcatc acacacttca aaagcactca tttggggttt
     1741 tttatcataa gtttttacct tggggcttgg gattaaaacc cttgtttcat tttctaaaag
     1801 ctcttctttt ccgccattaa aaaagaaagt tacatgggcg tatttttcgg tttctgcggt
     1861 atgaagctga ctaagccctg ctttagaaat cacttgcgct aaagtatttt caattttttc
     1921 tttttcaaaa agcacaggga gtttaaattt atcatcataa acactcatag taagtaaatt
     1981 ttcaaagatt ttttcgcgtt caaactcttt aaaatcctta gaatttaaca cttcaataag
     2041 ttgtttcatt ctatcatttc taaaattgat aaagataatg ccatcttctt ctctcatgcc
     2101 cttgtaattc tcattttgag ctgctttaat aaactcatca gtaacatttt catcgtaaga
     2161 tttttgtagg tattctaata aatttggcac tttataagcc ttacctaaca agcactcata
     2221 atactctttt accctatccc aacgcttatc tctatccata gcataaaaac gcccacaaag
     2281 cgtagcaaaa tgcacgccta agttttcaca aaattctttt aaatctttta tgaaatttaa
     2341 gccacttttt ggacttgcat cacgcccatc agtgattgcg tgagcaaaaa cttcattgcc
     2401 atttttcgca caaatttcaa gcatggcttt aaaatgcgta tccatagaat gcaccccgcc
     2461 atcactataa agccctataa tatgcactct tttacatttt gctaaaagtt tttgcaaatt
     2521 ctcatttttt tcaagttctt tgttttcaat ggctttatta atacgcacta aattttgata
     2581 aataatacgc ccacctccta tacacatatg ccctacttca ctatttccca tctgcccttc
     2641 tggcaaacct acagctaaac cactcgtttt tagtaaagaa tttgggactt ccttaaaaag
     2701 cttttcataa cttggttttt tagctgcttc aaaagcatta aacttactat tcttattata
     2761 ccctattcca tctgtaataa ttaaaacgca tttttgcttc atttttctct cttttataag
     2821 aatttttttg gttagatttt actaaaatta aacttttaaa aaccaaaaag aaggctaggt
     2881 tttgtattat ctttcagatt taagtcatta tgcttttttt acttatatta gtgtgcgtgc
     2941 aggatttgca ttttttatcg ctttatgttt gtctttattt ttaatgccta aatttattac
     3001 ttgggcaaaa gctaaaaatg ctagtcaacc tatttacgaa tacgccccag aaactcataa
     3061 aaccaaatgc catactccaa ccatgggtgg gcttattttc atcagttctg cagtaatcgc
     3121 aagtttattt tgtatcaaat ttgataatat ttttgctata agtgctttac tttgtttgat
     3181 acttttttgt ttgataggac tcatagatga tttaggcaaa gttctaaaaa aagataatca
     3241 ttcaggactt agtccaagaa tgaagctttt agcacaaatc atcgctggac ttatctgcat
     3301 cttaccttta tattttagtt cagagcttag cacggaactt tttatacctt tttataaaca
     3361 ccctcttttt gatatggaaa tttttgccat tgctttttgg attttggttt taatttctag
     3421 ctctaatgct gtaaatttaa ccgatggact tgatggctta gctacagttc caagcatttt
     3481 ttctttatct actttaggga tattcttata tttgagtgga aatttaaatt atagtgaata
     3541 tctacttttg ccaaaaattc aaggacttgg tgaagtagtg attatttgtg cagcgctaat
     3601 tggtgcttta atgggatttt tatggtacaa ctgttatcct gcacaagttt ttatgggaga
     3661 tagtggaagt ttagctttag gtggctttat aggattttta gccgttatta gcaaaaatga
     3721 aattttactt ttactcatag gttttgtttt tgttcttgaa actgtttctg taattttaca
     3781 agttggaagt tttaaaattt ttaataaaag agtatttaaa atggcgccta ttcatcatca
     3841 ttttgaaaaa gttggctgga tggaaaataa aattatagtg cgtttttgga tgatagcctt
     3901 actttcaaat ttgcttgcac ttgcatcaat aaagctaaga taatgaaaat ttcacttttt
     3961 ggatacggaa aaaccacacg tgctattgct gaaaatttag tagataaatt tggacctttt
     4021 gatatttatg atgatcattt tacagaaaca aaaaaagata cactaggaaa tttactttta
     4081 aatcctaatg attttgatga taatttaagc gacattgaaa ttcctagtcc aggttttcca
     4141 ccaaagcaca aactcattca agaagcaaaa aatttacaaa gtgaatatga ctttttttac
     4201 gatgtcatgc caaaatctgt ttggataagt ggaactaatg gaaaaacaac cactactcaa
     4261 atggctacac atttattatc acatattggt gctgttatgg gtggaaatgt tggaactcct
     4321 ttagcagagc ttaatcctta tgaaaaactt tggatacttg aaacttcatc ttttacccta
     4381 cactacactc ataaagctaa acctgaaatt tatgcacttt tacccatcag tcctgatcat
     4441 ctttcttggc atggaagttt tgataattat gttcaagata agctaagcgt tttaaaaaga
     4501 atgaatgaat gtgatgtaac aatactgcct aaaatttatg caaatactcc aacaaaagct
     4561 cataaaataa gctatgaaga tgaaaaagat ctagctgtta aatttggcat tgatacggaa
     4621 aaaatttcct ttaaaagtcc ttttttactc gatgctatca tggctttagc tatagaaaaa
     4681 attctacttg atactttaag ctatgagcct ttaaatagct ttgtaatgga aaaaaataaa
     4741 ctcgaagaga ttaaagacag tcaaaatagg ctttgggtaa atgacactaa agccacaaat
     4801 gaaagtgcag taatggctgc gcttagtcgc tataaagata aaaaaatcca tcttatcata
     4861 gggggagatg ataagggtgt agatcttagc aatttatttg attttatgaa aggatttgat
     4921 atagaactct atgctatagg tattagtacc gaaaaaatgc ttgattatgc aaaaaaagcg
     4981 aatttgaaag cctataaatg tgaagtttta tctaaagctg taaatgaaat ttcaaatcac
     5041 ttaagagtca atgaagtagc tcttttaagt cccgcttgtg caagtttaga tcagttcaac
     5101 tcttacgcag agcgtggaaa agtctttaaa gaatgtgtga ataaaattta atttatttta
     5161 cttttcatag aaaattttaa attttatcct tctagtattt tcaaacccct aaaaacaccc
     5221 tattctctct aaaaacccta accagcagca aactcttttt taaacacgat tctaagtatc
     5281 atctaaaaca acaataaaaa taaacatagg atttatatat aaagtaagta atgaagaca
//
LOCUS       DARGEM010000106         5246 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.106, whole genome shotgun sequence.
ACCESSION   DARGEM010000106 DARGEM010000000
VERSION     DARGEM010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.106"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..529)
                     /locus_tag="SFZ78_001457"
                     /pseudo
     CDS             complement(1..529)
                     /locus_tag="SFZ78_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894998.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            complement(533..811)
                     /locus_tag="SFZ78_001458"
                     /pseudo
     CDS             complement(533..811)
                     /locus_tag="SFZ78_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806291.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
     gene            complement(868..1290)
                     /gene="rimP"
                     /locus_tag="SFZ78_001459"
     CDS             complement(868..1290)
                     /gene="rimP"
                     /locus_tag="SFZ78_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG8212306.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCA
                     KLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELAKITTNEKEKIE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            complement(1280..1642)
                     /gene="rbfA"
                     /locus_tag="SFZ78_001460"
     CDS             complement(1280..1642)
                     /gene="rbfA"
                     /locus_tag="SFZ78_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG8212307.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            complement(1639..4254)
                     /gene="infB"
                     /locus_tag="SFZ78_001461"
     CDS             complement(1639..4254)
                     /gene="infB"
                     /locus_tag="SFZ78_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG8212308.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERS
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            complement(4241..4498)
                     /locus_tag="SFZ78_001462"
     CDS             complement(4241..4498)
                     /locus_tag="SFZ78_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG8212309.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            complement(4523..>5246)
                     /locus_tag="SFZ78_001463"
     CDS             complement(4523..>5246)
                     /locus_tag="SFZ78_001463"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8212310.1"
                     /translation="KNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVI
                     VGAIASAYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKE
                     IDKDLAAVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKF
                     ASQDKLHEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKI
                     QTKFKDFRVQYLEFDDNGFEIC"
BASE COUNT         1496 a         1059 c          598 g         2093 t
ORIGIN      
        1 ctttatgatt tttgctcata tcatcaaatt taattctaaa tgtttttcca cctctatatt
       61 gaatagaata ttttgtattt ggcaattgaa aatatttttc aggattattg gcatcttctt
      121 ttgttttttc tttcaagtca tttatataaa aattaaaact ttctatgtca tctctattct
      181 ccaaagcttt cttgcaaagc tctttaaaaa ttccatcttt aaccttataa ttaatttgcg
      241 aattttcatc actatttaaa ctaggcttta taccttctac aaattcttca tatccgtagc
      301 tttgatgaaa agtagtaaat actatttgtc cattttttac atactcatca aatttagctt
      361 ttttctcatc tctactttct aaattttcac ccaagatttc caaagcctta tctatagtat
      421 gataagtttt tcctgtccct ggagacccat aaagaatttg gtttaaggat atattattat
      481 ttatattatc ctttataatt ttaaaatcat ctttagaaaa tgtatttttt ggtatagcaa
      541 aaaatttgca atttttataa tatctataaa atatttctcc atctttactc atagttttta
      601 aataattaag aatagaagaa gtccatttat caccttgact ttttgtgtga aattcatcta
      661 taaatttacc ttcttgataa acatacacac tcataccgcc attttttaca actgcttctt
      721 taaattcatc ttcatctttt ggaaaataat aatacacatt accattttga tctgccttac
      781 ttattttcca atcacattta ttttctaaca ttgcatgcct tttgattttt tgtttttatt
      841 ttaattatat aaaaaaaatc taaattttta ccattgtatg aaggttctag ctttttttat
      901 atcattaaaa tttatagtag ttttttcttt attttctaaa ttttctaaag tgatattttc
      961 atcatctaca gcaatgattt ttgcttcgat tttttctttt tcattggttg tgatcttcgc
     1021 aagttcacct atactttttg caaaatgttc tatcttactc agttttcttt caagtcctgg
     1081 tgaagatact tctaaaaaat actccccatt tacaggtggt tctacatcaa aaataggcga
     1141 taaaatttca ctaagctttg cacaatcatc aagatttacc ccgccttctt tttgcacata
     1201 aattctataa atttttttac cattttcact tactagctca tcatcataaa agctaagttc
     1261 tgcttctttg caaagggctt caagattcat ttttatcctt ttttattttt tcaaaaagtg
     1321 cgtccatatg gttttgatac tcaagcctat catcaaattt aaaatgaaaa ttcggacacc
     1381 tataccagcc ctgctcgctc atgcaataat tttgcaaagc tctacttgcc ttttttaaag
     1441 aagataaaat tttttcttgc tcatgaacat taaaaaacat tttatcaaga tacacaaaag
     1501 catcgtatct gcctttttta cactctacat ccactacaca caaatttttc aaattttcat
     1561 catctaaatt tgctaaagct tcagggatca gctcttttaa gatactttca gtgcgtagtt
     1621 ttttaatctc acttgggttc atagacttgc ttgttcctct acttctttat agctttctat
     1681 ataatcaccc actctcatat catcgcaccc ttctatacct acgccacatt catagccttt
     1741 tgccacttct ttagcatcat ctttaaagcg tttaagtgag cttacatttc cctcataaac
     1801 cacaactcca tcacggataa ggcgaatttt agccccacgg ttaatcaccc cttcggttac
     1861 catacaacct gcaatttgtc cgatttttgg cacattgatc acttgtctaa tctctgcttg
     1921 tcctaattgc tcttcagaaa taatcggact catcatacca ccaagcaagg cttttacatc
     1981 atctaaaaga ttataaatca cattataagt tttaatttct acgcctttat ctttagaacg
     2041 ctctttaact tcccctgttg ggcgtatgtt aaaacctagt actatagagt tttcactcgc
     2101 acttgcaagc tctatatcac tttgcgtgat tcctcctact ccactatgaa tgatattcac
     2161 tttaatctca tcatttctaa gtttttctaa acttgccttt aaggcttcta aagatccttg
     2221 cacatcagct tttaaaataa caggcaaggc ttttagatta ccttctttga tcttagctcc
     2281 aagctcatca atgctaactt tagtggattt gctaagttct ttttggcgat tgtattcgtg
     2341 gcgtttatta gcatattctc ttgcttcttt atcggttttt actgcgatta aaatttcacc
     2401 tgcatctgct acttcactaa gccctacgat aaccccacat tcgcctggtt taatttcttt
     2461 taaggcttta ccttgatcat cgctcatcgc acgcactttt ccataagcct cgcctgcaac
     2521 cacggtactt cctacagtaa gtgttccatt ttgcacgatg atagtagcca ccgcaccacg
     2581 ccctttttgc acagaacttt ctataatgct tgctttagca aaactttttg gattggcttt
     2641 aagttctaaa atatcagctt gtaaaagcac gatttcaagc aaatcttcaa tccccattcc
     2701 tgttttagcc gaaactccta caaattcata agatccgccc cattctactg gcatgatttc
     2761 catttctgcg agttgagttt ttaccatatc gggatttgct gcttctttat ccattttatt
     2821 aatagcaata ataataggca cacctgctgc tttagcatga tttatcgctt ctttagtttg
     2881 tggttttacc ccatcatctg cggctacaac gatgattaca atatcagtga tacttgcacc
     2941 ccttgcacgc atagcagtaa aagcttcgtg acctggagta tcaataaaag taattttacg
     3001 tccatttttt tctaccatat aagcacccac gtgctgagta ataccccctg cttcaccact
     3061 tgcaacgcgt gattttctaa tataatctaa caaagaagtt ttaccatgat caacatgccc
     3121 catgatggta atcacaggtg ctctagtcac taaatctttt tcatcagtct cttcttcata
     3181 gtcttttaca taatcaaact catcagcctc gttaatgata ttgatctcta taccaaattc
     3241 agcagccaaa atttcaatcg catcttcatc caagaaatca ttttttgttg tcatcattcc
     3301 aagcatgaaa agttttgaaa tcacttcact agtgcttttt cctatcttat cagcgaattc
     3361 atacacacga atttctttag aaatagcaac gctacctact tcttctactt cctttttttc
     3421 aatcttttta gatggttttt tacgacttct tctttgaatt ccaccttcaa gcccaaaacc
     3481 cgcagaattt ccaacagctt gtcttataaa attaggttgt tttttattga tattttgtgg
     3541 tttttcttgt tcttttacac taaaatcagg taatactacc tcatcttcat catctaaaga
     3601 aatatcacca aaatcatgtt catctaaaaa attcattttt tcggtacttt cttttttact
     3661 cgcaacaaaa gatttttttt cttttttctt tttctttaaa ctctcatcag catttgaaaa
     3721 catagttttt aaacttaagc gctcttcatt attgatagat atatcatttg aattttttac
     3781 ttcttctttt ttaacttgaa tttcttcttc gtcttttttc tttttaacaa taacaagtcc
     3841 gcgtcttttg gctaaagttg cactagcaag gctttgtggc ttatgagcat caataatttc
     3901 ttgtttttct tcctcttttg cattttcttt ttcaattttt aattcttctt ttttaacttc
     3961 ttgtttaagc ttttcttctt ttttaggttc ttttttttca gattcattta gcttttcttg
     4021 ttcttttata ttttcttttt taggcttttt tgccgtagga gttttgatat ttttcttaaa
     4081 agcttctgga atttctcttg tttgtatata ctcataaata gctgccgcaa tctcaggttc
     4141 tacagcattt gatgctgttt taattccaag tcctaattca tttgcctttt caataatttc
     4201 cttactatca taacctaatt cttttgcgat ttcatgaatt ctaatctttg ccatttaaaa
     4261 atatctcctt aagtccttgc tgagtaattt tagtatttaa atttttacat attttagaaa
     4321 atgctttttg taagacttta tcttctctct caatacaatt ttgacataaa tatccgcttc
     4381 ttccatgttc cgctttaggc acaatatctc ctaaaacaac tttaaatcta aataacatat
     4441 tttgctcaaa gcggttttta cacactatgc acattctaat tggtatatgt tttttcaaaa
     4501 ttatatcttt tttttatatt ttttagcaaa tttcaaagcc attatcatca aattctaaat
     4561 attgcacacg aaaatcttta aattttgttt gtattttctt tgctaaagct aaagcatcat
     4621 ctttaaaagc taaagaaaaa aagctcgatc ccgaacctga aagtgtgctc attaaagctt
     4681 tattttctaa ggcaaatttt tgcacttcaa aaagctcggg taagtttttc atacgattga
     4741 tttcatggag cttatcttga cttgcaaatt ttaaaaattc atattttttc tccaaaaaac
     4801 aagcggttaa aaatgaagca tgagaaaggt tgaaaaccgc atcattaaaa cttaaatttt
     4861 tggccaaagc ttggcgtgat tgttccgtgc tcattgccaa atttgggatc acaaccacag
     4921 cagctaaatc tttatcaatc tcttttttga tactataaac tttatttttt tcaaccaaag
     4981 aacacacaaa accaccaaga gtagctggag cgatattatc tggatggttt tcataaatta
     5041 aagcttcatc taaaatacgt tctttttcta ccttaaatcc actcatataa taagcactgg
     5101 caatagctcc aacaatcaca gctgaagagc ttcctaatcc tcttgaaaga ggaatgttat
     5161 tttgaaaaat aaaacgaaaa ttatcttttt ttccgcttag tttttcataa atttcataaa
     5221 aaatatttac aaatatattg tttttt
//
LOCUS       DARGEM010000107         5224 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.107, whole genome shotgun sequence.
ACCESSION   DARGEM010000107 DARGEM010000000
VERSION     DARGEM010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5224
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.107"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            308..803
                     /locus_tag="SFZ78_001464"
                     /pseudo
     CDS             308..803
                     /locus_tag="SFZ78_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            817..1605
                     /locus_tag="SFZ78_001465"
     CDS             817..1605
                     /locus_tag="SFZ78_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212311.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            1726..2331
                     /locus_tag="SFZ78_001466"
     CDS             1726..2331
                     /locus_tag="SFZ78_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG8212312.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2331..3347
                     /gene="mnmA"
                     /locus_tag="SFZ78_001467"
     CDS             2331..3347
                     /gene="mnmA"
                     /locus_tag="SFZ78_001467"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG8212313.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3375..3620)
                     /locus_tag="SFZ78_001468"
     CDS             complement(3375..3620)
                     /locus_tag="SFZ78_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8212314.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTASVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(3743..3982)
                     /locus_tag="SFZ78_001469"
     CDS             complement(3743..3982)
                     /locus_tag="SFZ78_001469"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8212315.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLFGKLGVTQFLAEA"
     gene            complement(3921..4145)
                     /locus_tag="SFZ78_001470"
     CDS             complement(3921..4145)
                     /locus_tag="SFZ78_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8212316.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4199..4597)
                     /locus_tag="SFZ78_001471"
     CDS             complement(4199..4597)
                     /locus_tag="SFZ78_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8212317.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            complement(4758..4893)
                     /locus_tag="SFZ78_001472"
                     /pseudo
     CDS             complement(4758..4893)
                     /locus_tag="SFZ78_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
     gene            complement(5130..>5224)
                     /gene="ffs"
                     /locus_tag="SFZ78_001473"
     ncRNA           complement(5130..>5224)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SFZ78_001473"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         2005 a          778 c          867 g         1574 t
ORIGIN      
        1 aatttaagat aaaaatgaaa atttgttacg aaagcaaaca aaccgagaat aaaattttta
       61 agtatttaaa gaaaattcac ttaactttca aagcaagatt aaacttttgc tagaataagt
      121 cgatagtagt tttaaagaac ttacaaaaag aatttatgaa aggattttca atgaaaaaga
      181 tttttgcttt attagcttta acttctttac tgactagttc tgttttgctg aggatttttt
      241 agctaaactc acaaaaggtg ccttaagcga tacaagcccg ggtgtcaaag aactcagcct
      301 tgaagagatg aaagaagtga agggtgggta tataacctat ttaaaacgac ttagtgataa
      361 tgaagttata gcctttgcca aacctgattg gaatttggaa ttaactttat ttcaagatag
      421 taacggagat caatattatt ggaatagaga aggacttgtt cgatttggtg gaatgtgcgg
      481 tatagaaact acaaattgtt tggttaatgg taagcattcc tatatcaatc aaaaaagact
      541 ttgggaaact atgagtatag tgggcgatga cccttatcgt aactttcttg gatatactgt
      601 gaaaagaaat attggtattt ctaatttagg gaaaagattt gtgtattttt cttatggagt
      661 ggctgtaatc aacgaacaat caggttcttg gtatagagta aaatcaagtc ctgtctttga
      721 ataattacag agtagttaag gaaatcagtt caaactataa agacttttta gaaagatatc
      781 ttggtgggta ttctatcaag taaagaggaa aaactaatga taaatagtct aaactcaaat
      841 ttaaactatg attataacac ttcaaatttt aaacaagata aaaatattga ttttaaaatc
      901 aacaaacacg gagtagccgt tataacagga gaaggtgctt tgccttatcg tggaaaaaaa
      961 tttgagtata atcctaaaat attcggactt gatgaaagta ttagcaaaaa agatatgcaa
     1021 gaatttaaca actttatgaa gtcaaatgct ttaaaagacc ccaataaaat agaaaaatcc
     1081 cctttaaaag attttaatcc tgcttataca aaatgggacc caactacgga gaaaatgatg
     1141 ttaggttttt ttgtttctta ttctaagatg tttcatttgg gctacgacat catcaaaaaa
     1201 gccgatgaat tttataaaga atttgacgca cttataagta aagatttaag cttaaatgag
     1261 tttaaaacta aatacataga ttttaagcaa agatacgatg aatttgtgaa agaatacgaa
     1321 atggctatgg gtgataaaat gttgctttct agtgatgatg aaattatcac tcaacaaagt
     1381 gaaaaaccct tcaaagccat tcaaggcgaa agtaaaaaca aagaaactta caaagatgat
     1441 agcacaagaa acgaacttgt aaaaaaacta ttagaaggta aatttagcac tagtaaagaa
     1501 ttagaacttc tttttggtat gaaatttagt gatgatgatg caggagaatt taataaaatc
     1561 ctttctttaa attctacacc aaaaagtata gatattaaag cttaaggatt taaaagtctt
     1621 taaattccta atcttaataa aataaaccta ttaaaactta tataataaag aacttattat
     1681 aaatttttag ctagaatgga atttatttta actaaaggtt gaaaaatgaa tgaaaaaata
     1741 agccaagatt tagaaaaatt tgctaacata ccaaacctaa aaaatgccgt aacttttttt
     1801 ggttcagcaa gacttaaaga agataatttt tattatcagc aggctaaaat tttggcacaa
     1861 aaatgtgctc aaaatggttt ttgtgtgata agtggtggag gtggtggtat tatgcgtgca
     1921 gccaacgaag gtgctttttc acaaaaaaat aatacaaatt caatgagttc tgtagggttt
     1981 aatatatttt tacctcacga gcaaaaactt aatgattttg tagaatataa tattactttt
     2041 gagagcttag ccatacgcaa aatggctctt attgaaaaga gtctagcttt tgtgatcttc
     2101 ccaggcggct ttggaacact tgatgaattg tgtgaaattc ttacattaaa acaattagaa
     2161 tttaaaaaag atgttcctat tattttgttt gggagtgaat tttggcgagg ttttgatgag
     2221 ttcgtcagaa attctttact caaacttgaa gtgatttcta aaggagatga gttaaagtat
     2281 aaaatcactg acgacttgga ttttataatt aatactttaa aggaaattta atgaaaattc
     2341 tagtcgctat gagcggtgga gttgatagta cagtcactgc ttataaactt aaaaatttag
     2401 gtcatgaagt tataggttgt tatatgaaac ttcatggcaa accaaattat cacgaagaaa
     2461 atatcaaaaa agtagaaaaa gttgcaaact ttttgcaaat tccttatcat attttagact
     2521 tacaagaaga ttttaaaaac aaagtttaca tgccttttgt ggatacttat aaagagggta
     2581 aaacaccaaa tccttgcgct ttatgtaacc gttttatcaa acttggaaaa cttttagaat
     2641 ttgctaaaag tttaggttgt gaaaaacttg ccacagggca ttatgcaaga cttgaaaaca
     2701 acttaataaa aaccgcagta gatgaaagca aggatcaaag ctattttttg gccagtgcag
     2761 ataaagaagc tttaaaatat cttatttttc cgctaggcga aatgaaaaaa gaagatgtga
     2821 aaaaatttgc ttccactata gaggttttaa aatcttttgc cacccaaaag gaaagttctg
     2881 aaatttgctt tgttgaagat acttatgtgc aagttttaga tcagtttatg gatacaaaaa
     2941 ttcctggaga agtattagat agtagcggaa aagtagtagg caaacatgag ggctatatgc
     3001 actataccat aggcaaaaga agaggctttg aagtgcgtgg agcgcatgag ccgcattttg
     3061 ttttaaaaat caatcctaag caaaaccaaa tcatcgtagg aaccaaagaa gaacttaaaa
     3121 tcagtgaatt taacctaaaa aatatcaatc tttttataga cgctaaagag cttgattgcg
     3181 aagtaaaaat ccgctatcgt tcaaaatcca caccttgcaa ggtagaaatt tatgaagata
     3241 aaagtgcaaa aatcatccta aaagatcctg tttatgggct tgctagcgga caaatggcag
     3301 tcttttatga tcatgataaa gtcatagcaa gtggttttat agaataattt ctaggaatta
     3361 attcctagaa attattaata aaatcctaaa attttccacc aaaaaagccc aacagctatc
     3421 atcaccacta tatcaactat ggaaatcaca aaacctatac tccaccattt tttaagagtt
     3481 acacagcctg ttccaaaaat aacagaagcc gttcctattg catagtgagt taatgccatc
     3541 ataacattac ctgaagctat cataataaaa gcataaaaaa gtggtggtgc tcctaaggca
     3601 agctgcacta taaaaaacaa aaaacattgc tgatatatga gctgtaatgg aagcaaagaa
     3661 atagtgtgta tataaaaaaa gcaaggctta aaaatatcat aatagaaatt tccccaagtc
     3721 ccatagcaga agcaaattca ccttaagctt cagctaaaaa ctgtgtaacg ccaagtttgc
     3781 caaataaagt tgccatcatt acaagagctg aaaaccatac taaagtattc caagcagctt
     3841 tttcagccaa aacttcccca aaagttaaaa ctccactaat caacaccaaa gacaacccaa
     3901 gcaaagccac actagtcgca tcaagagaaa ttccaaaaaa acaagcccaa agctccagcc
     3961 cataaaagta aaagcgagac aaaaacactg agcatgattt tttcactatt tttcattttt
     4021 acaagttctt ttaatttatc tttagcaaaa gtagaagcat taggcgtgga tttaatttct
     4081 agcggagaga gaaaataaag catcaaaggc atcaaaagca tagcagctat accaggtaaa
     4141 aacatcccta aagcctatta cccccaagtt aaatacactt ctaaatttgt agcttgtgct
     4201 ataagatcaa ccaccaaagg atttggagct gtagctgtaa taaacatagc tgatgaaata
     4261 ggattggctc ttgataattt accaaagaaa gataagtgcc tattttattt tgtgttccat
     4321 cttcaggagt ggatttaaaa cttcttgcaa taacttgaac tataggattt atgatagccc
     4381 ctgctcttgc agtatttgaa ggagtaactg gagctaaaat agtttcacaa aaagctatag
     4441 aataagcaat acctaaggtt tttttaccaa gaatactgat aaaatgataa gccaaatgct
     4501 ctccaagtcc tgttttaata actccacgag ccacaataat agaaatcact ataaaccaaa
     4561 taagagaatt tgaaaaacca cttaaagcat cttttatgcc cgttttagat tttaaatttg
     4621 atatagcagt atttaccttt tcatcttatg ctcttttgat ataaaaaatc aagtgctgaa
     4681 gtatttaaag gaaattttag tctcatcaat aagttgttgc gtagaagttt tcgaagtagc
     4741 tttggtgtaa attttactta gattttcaat tgggtagtgg taatacccac taagagctac
     4801 tatggcaata gctataaaag gcattacttg taaaatcact gccataatca cagcaataaa
     4861 aagcccaaga aaatgccaag aattatcttc caaacctaca ggagtaggta caagccaaaa
     4921 cacagctgca attaaaatac acagcaccaa caagggaatt ttctttctat ccattgttta
     4981 tcctttgata ttggtaatgt aatttacaat gcttaaattc tagttaacta atattttaat
     5041 aaatcttaaa attataattt ttaaataaat ttttaattta taaaaaagct agcctaattg
     5101 aaaaatggga attttaaaat gaataaaacc cttccccaga taactgcggc acacactaaa
     5161 atcaagtgct ctgctgtgtt cccaccctga agcggtgctt aaaaatagca ttgcacaggt
     5221 ctaa
//
LOCUS       DARGEM010000108         5164 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.108, whole genome shotgun sequence.
ACCESSION   DARGEM010000108 DARGEM010000000
VERSION     DARGEM010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5164
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.108"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..457
                     /gene="mreC"
                     /locus_tag="SFZ78_001474"
     CDS             <1..457
                     /gene="mreC"
                     /locus_tag="SFZ78_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8212318.1"
                     /translation="PQVSLTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGI
                     AINKNGRAMALLQGDDQCVFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEIL
                     TSGLDNIFFSDIPVGIVNRVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            718..3987
                     /gene="carB"
                     /locus_tag="SFZ78_001475"
     CDS             718..3987
                     /gene="carB"
                     /locus_tag="SFZ78_001475"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG8212319.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDKI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDTKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVFKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNHELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            3984..4406
                     /locus_tag="SFZ78_001476"
     CDS             3984..4406
                     /locus_tag="SFZ78_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG8212320.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(4407..>5164)
                     /locus_tag="SFZ78_001477"
     CDS             complement(4407..>5164)
                     /locus_tag="SFZ78_001477"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG8212321.1"
                     /translation="AADKLAPLFYQKNDGFISIEIDPRLHDNTTLSLGEAKRLYSAIG
                     KENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNI
                     ALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANLAYNNIYSKNEPNIRAL
                     FASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMHFKKPLMNFEIYTELNQ
                     IISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
BASE COUNT         1795 a          676 c          986 g         1707 t
ORIGIN      
        1 acctcaagtt tctttaacta gagttatttc ttacgttcaa ttgaatgatt ataaaaaatt
       61 atggttagat tggagcaaaa ttccagttgg taaaaatcgt ggtttaatat atcaaggata
      121 tactgcaggt atagctatta ataaaaatgg tagagcaatg gctctcttac aaggtgatga
      181 tcagtgtgtt ttttctgttt atataggaaa atccaaagct ccaggtttaa tccagggtga
      241 agatggcagg attgtggtta aatttattcc aaaatgggca aaaattaata ccggagatga
      301 aattttaaca agtggacttg ataatatttt cttttcagat atacctgttg gtattgtgaa
      361 tagagttaat gatgaagata tgtatcaaag tgtagaagta aagccttatg ttaagattag
      421 tattcctgct tatttatatg tagtagataa tttataagtc aaggattaga ctttttaaaa
      481 attttctata tttttgctaa ttattataac tttgtttaat gctaaaaatt ttgttaaatt
      541 atcaaataaa tgtttataat tgaatgagaa ttttataaaa aatcttaaat ttctttatgt
      601 attatttcct agattaaaag cagagtgttt attttttaaa attatatcga taatttcaaa
      661 gtttataaaa ctaatttttg ttataatcag cccaaattta tgctcttagg aaaatttatg
      721 ccaaaacgaa cagatattaa aagcatttta cttataggaa gtggtcctat tgtgatagga
      781 caagcttgtg aatttgatta ttctggaact caagccgcaa agactttaaa agaattagga
      841 tatcgtgtag tattaatcaa ctcaaatcct gcaaccatca tgacagatcc cgaatttgca
      901 gatgcgactt atatagaacc cataacaaaa gaaagtattt taagtattat taaaaaagaa
      961 aaaattgatg caattttgcc aactatgggt ggacaagtag cgttaaatgt tgctatggaa
     1021 gtttatgaaa gcggactttt aggagatgtg aaatttttag gcgcaaatcc tgaggcgatt
     1081 aaaaaaggcg aagatcgtca ggtttttaaa gaatgtatga aaaaaattgg catggatttg
     1141 ccaaaatcga tgtatgcgta taattatgat gaagctttaa aagctgtaga taaaattggc
     1201 tttcctttga tgatccgtgc ttcttatact ttagggggtg ctggaagtgg cgtggtttac
     1261 aatatggacg aatttaaaga acttgccaat actgctttag ctttatcacc tatccatgaa
     1321 attttgattg aagaaagttt gttaggttgg aaagaatatg aaatggaagt tatacgcgat
     1381 agagcggata attgtatcat agtttgtagc atagaaaata tcgatcctat gggagttcat
     1441 acaggagata gtattacaat agctccagca ttaactttga cggataaaga atatcaagtt
     1501 atgcgtaatg cttcttttgc tattttgcgt gaaattggcg tagatacagg cggaagtaat
     1561 gtgcagtttg ctatcaaccc aaaaaatgga agaatgatag ttatagaaat gaatccaaga
     1621 gtttcaagat caagtgcttt agcttctaag gcaacgggct atcctatagc aaaggttgca
     1681 acacttttgg cagtaggctt tagtttagat gagattaaaa atgatattac aggaactcct
     1741 gcatcttttg agcctgtgat tgattatatt gtaacaaaaa ttcctcgctt tacctttgaa
     1801 aaatttccag gagcaaacac aactttaggt acagctatga aaagtgtggg tgaggtgatg
     1861 gctataggac gcacttttaa agaaagtata caaaaagcac tttgttcgct tgagcgttct
     1921 ttaagtggtt ttgatagagt aaaatttgaa gatagaaatg atcttgtttt taaaattcgc
     1981 aatgccaatg aaaagcgttt actttatgtt gctcaagctt ttagggaagg ttttagcgta
     2041 gaagaacttt atgagctttg taaaatagat ccttggtttt taacacagat taaagaaatt
     2101 gtagattttg aagagcaaat tgatatggat attttaaaca ataaagctct tttgagaaaa
     2161 gcaaaaacta tgggcttttc agacaaaatg atagctttgc ttgtaaattt gaaagataat
     2221 ttagaattaa gccaaaatga tatttattat gcaagaatga agcaaaaaat catcgcagaa
     2281 tttagtgaag tggatacttg tgcgggtgaa tttgaagctt taactcctta tctttattca
     2341 agtatcaatg taagcgaact cactcaaagt aaaaacgata ctaaggataa aaaagaaaaa
     2401 aaagtgatga ttataggtgg ggggccaaac cgcataggac aaggtataga atttgactat
     2461 gcttgcgtac atgcttcttt tgcgcttaaa gatatgggta ttaaaactat tatgtataat
     2521 tgtaatcctg aaaccgtttc gactgactat gatacaagtg atattttgta tttcgagcct
     2581 attgatttcg aacatttaag agcggtgatt gagcgtgaaa aacctgatgg agtgattgtg
     2641 cattttggtg gacaaactcc tttgaaattt gctaagcgtt taagtgcttt tggagctaag
     2701 attataggta ctagctcaag agtaattgat atggcagaag atagaaagaa atttgccgaa
     2761 tttattacaa agctaggtat caatcagcca aaaaattcta ctgcaacaag cgtagaagaa
     2821 gcggttttta aggctagtga tatagggtat cctgtgcttg taagaccaag ttatgtttta
     2881 ggtgggcgtg cgatgcgcgt ggtaaatgat gaggctgaac tgagactcta tatgcaagaa
     2941 gctgtggatg taagcgataa aagccctgtt ttgatcgatc agtttttaga caatgctaca
     3001 gaaattgatg ttgatgcgat ttgtgatggc aaagatgttt atgttgcagg aattatggag
     3061 cacatagaag aagcaggaat tcattcaggt gacagtgctt gttctttgcc gccttgcaat
     3121 atcgatgaaa aaatgcaaga atttattgca caaaaaaccg cagatattgc tttaaatttg
     3181 ggagttgtag ggcttttaaa tatacaattt gctttacata atcatgagct ttatatgata
     3241 gaggtaaatc ctagagctag tcgtaccgta ccttttgtta gtaaagctac gggtattcct
     3301 ttagcaaaag tggcaacgcg tgtgatgtgg caaggaaatt taaaagaagc tttaaaattt
     3361 tatgatactt ttaaagtggt taattttgat actaaaattt tacgccctaa aactccaaaa
     3421 tatatgagcg tgaaagaagc agtatttcca tttgcaaaac ttagtggaag tgatttagaa
     3481 ttaggccctg aaatgcgttc aacgggtgaa gttatgggta taagcaagga ttttgcaaat
     3541 tcttatgcga aaagtcaaat tgcatcgttt aatcatcttc cagagcaagg cgtggtattt
     3601 atctccttaa aagataagga taaaaaatat accaaaaaaa tcgctgcaga atatgtaaag
     3661 cttggcttta agcttatggc aacaggggga acttgcaagg aaattttaga aagtggtttt
     3721 gagtgcgaac ttgtacataa aatttcagaa ggacgcccca atgttgaaga taaattgaaa
     3781 aatggggaaa ttcacttagt tatcaataca agcgatagtc acagttttaa aggcgatacg
     3841 aaaaaaattc gtgaaaatat tattcgtttt aaaatacctt attttacaaa tttacgatca
     3901 gctttagcag gtgcaaaatc gattaaagct atacagagta aatcttgcct agatgtaaag
     3961 agtttgcaag agtggcttaa atcttgattt atttagctca aacagatact acggtaggat
     4021 ttttaagtaa aaatttagaa gagattaatg ctttaaaagg tagagataaa aatcagcctt
     4081 gcttaatcac ttctgcgaaa ttttgcgagt taaaaagttt agcaagaatt ccaaaatctt
     4141 ttaaaaattt agtacgtcgt tctaaaaaaa caacttttat ttatcccaat aatcaggcca
     4201 ttcgtattgt gaaagagtgt aaacatgcga attttttaag taaaaatggc tatttttatt
     4261 catcttcggc aaacaagcat ggaaaagaat ttgatgaaga atgggctaga agtgttgccg
     4321 atataatact tgatgagaaa tttttcgaaa atatcccatc aaaaatatta aaactttcaa
     4381 agaataaaat gataaaaata cgttaattaa agagctttta aaatatcttc aaaagcaata
     4441 caaaattgct ctaggccatc acttaataaa tcattgcaag ctttttctcg ttcactttga
     4501 gaaatgattt gattaagttc tgtataaatt tcaaaattca ttaaaggttt tttaaaatgc
     4561 atttttcctt taaatgcctc tattgcatca agaggagcag tattaacaga attctcaaaa
     4621 agaagttctt tgatataata gtcttttggc agatcatctc ctttaactcc ggtgcttgca
     4681 aacaaggcgc gaatattagg ttcatttttt gagtagatat tgttataagc taaatttgca
     4741 tttaaaattc caatacgatt ttgctcctta gccttaggat ttaaaagtct atcaaaacga
     4801 cttacaaaaa tacttataac agcttgtggt gttctagtgt tttgttcttt taaggctata
     4861 ttgttttttc taaattcgac taaacctgca tttaaagctt caaaacattt ttgactttgt
     4921 tcaagagaaa aaattaaggt agcattgacg ctaataccat ttttcataag ttcatacatt
     4981 acttcataag aagcttttgt agctggaatt ttaatcatta tattttcttt gccaatagca
     5041 ctataaagtc ttttagcttc acctaaacta agagttgtgt tatcatgaag tcttggatct
     5101 atttcaatac ttataaatcc atcatttttt tgataaaaaa gaggagctaa tttatcagct
     5161 gctt
//
LOCUS       DARGEM010000109         5141 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.109, whole genome shotgun sequence.
ACCESSION   DARGEM010000109 DARGEM010000000
VERSION     DARGEM010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.109"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..325
                     /locus_tag="SFZ78_001478"
     CDS             <1..325
                     /locus_tag="SFZ78_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8212322.1"
                     /translation="QKLKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKL
                     GLNTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVN
                     LLISE"
     gene            330..2126
                     /gene="glmS"
                     /locus_tag="SFZ78_001479"
     CDS             330..2126
                     /gene="glmS"
                     /locus_tag="SFZ78_001479"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG8212323.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAVGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDVIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2129..>5141
                     /locus_tag="SFZ78_001480"
     CDS             2129..>5141
                     /locus_tag="SFZ78_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG8212324.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGF"
BASE COUNT         1833 a          628 c          961 g         1719 t
ORIGIN      
        1 gcaaaaacta aaactttgcg agcttttaaa ttcaaatctt tctggtttta atttgaaaaa
       61 aattaaaaag ccaatcatta aaaaagatga gttaaaatta gacttaaact attctaaaat
      121 gtatgccaaa ttaggtctta atacgaaaga tcagcagggt ttaatggcgt atttgatgaa
      181 tgtttttaat gaacttgaac ttgttttatg tgcagcaaaa attcaaacca taagacaaag
      241 gacgcgtaat atttttattt ttcaaaagaa tgaaaaatta gaacatagcg agcaaaagtt
      301 agttaattta ttaataagtg agtaaaaaaa tgtgtggaat cgtaggttat ataggaaata
      361 atgaaaaaaa acaaattata ctaaatggac ttaaagaatt agaataccgt ggctatgata
      421 gtgcgggtat ggcagtgatg caagaaggcg aacttagttt ttttaaagct gtaggaaagc
      481 ttgaaaattt ggcgaataaa tgcacagatt ttgaaagtca aggttatggt tttgctgtag
      541 gtcatacaag atgggcaact catggtaagc ctactgaaat caacgcacat cctcatttag
      601 gacagtattc ttgtgtgatt cacaatggta ttatagaaaa ttataaagaa atcaaagata
      661 aacttgaaaa agaaggcgtg agttttttaa gtcaaaccga tacagaagtg attgttcagc
      721 tttttgaatt ttatgcaaga aatttgggag tttttgaagc ttggcaaaaa accatcaaag
      781 aacttcgcgg tgcttttgct actttgttag taacaaaaaa agatcccaat catgtgtatt
      841 ttgcaaaaaa tgctgctcct ttgattatag gtaaaaatgc aaataaagaa tggtattttt
      901 cttcaggtga tgcgcctttg ataggaagtt gtgatgaggt aatgtatctt gaagatttaa
      961 gcttgggata cgcgagtaaa gatgagcttg tcgtttatga aaatgatatt ttaaaatcac
     1021 tttgtttttc taagctttca ggcgataagg cttatgcaaa aaaagacggc tttcgttttt
     1081 ttatggaaaa agaaatttat gaacaaagtc gcgtgatgag tgaagtttta atggggcgta
     1141 ttcaaggcga tgaagtcgtt tttgatgagc taaacaatga agatttaagt caagtagatg
     1201 aaatcacgct ttgtgcttgt ggaacaagct atcatgctgc aatggcaagt gcttatttgt
     1261 ttgaaagaat tgctaaagtt aaagctaaag tagaaattgc aagtgaattt cgataccgtg
     1321 aagcaattat aaaaaaagat tctttattta tcgttatttc tcaaagtgga gaaacagcag
     1381 acactttaga ggctttaaag attgcaaaag agcagggtgc taagactttt gcaatttgca
     1441 atgtggataa ttctaatata gtgcgtttag cacatctaag tcttttaact cgtgcgggca
     1501 tagaaaaagg agttgcttca actaaagctt ttgctactca ggttttaaca ctttggatgc
     1561 ttgctatttt tatggcacaa aaaagaaatt taaatgtttc tgctgaaatt aaagcacttt
     1621 tgcatactcc aaattgcgtg agtgtaaaac aggctttaca tgaaaaaatt catcgtttat
     1681 ccaagcgtta tttagatgga catggctttt tctttatagg cagagatgtg ttttatcctt
     1741 tggctttaga aggagctttg aaacttaaag aattatctta tcttcacgct gagggttatc
     1801 ctgcaggaga gatgaaacat ggccctattg ctttggctga ttctaagctt tatactatag
     1861 ctttaatgcc aaagcacatg ctttatgaaa aaacaaaatc aaatgttgaa gagcttattg
     1921 ctagggattc tacagtgctt agcatttcac ctttagaatt tgatttaagt gatgatgtta
     1981 taaaaaccaa tgagcaagat cattatatgt gtgaattttt tgaaatgatg gtcattactc
     2041 aacttttggc gatggaaatt tccataagac ttggcaatga tgtggatatg ccaagaaatt
     2101 tggctaaaag cgtaacggta gaatagaaat gaaaaaattt ttttgtttaa ctttagtttg
     2161 taaacttttt gctttaagcg aatttgaact tcatcatatt gataaagtac ataagctagg
     2221 gtatagtgga gatactatta taataggtgt agccgatgat gcttttaatc aagatcatat
     2281 tagtttaaag gataagattt taaagtctac ttatcctact gatacagctg ggaaacagct
     2341 tatacctgat ttgaaaaaat caacacacgg aagtcatgta gcaggtatag ctgttggagc
     2401 aaagataggc gatagcaaac cttatggagt ggcttatggg gcaaaatttt atggagctgg
     2461 ggtgtttcca aatggctctt acactcaaat tcctgatatt tataattttt tcaaagatgt
     2521 gagtattatt aataatagct ggggtattaa tttttatcct tattttaatc ttaaggcttc
     2581 aaattctgga ttagtagatt gtactcaaac taatcaaggg acaagctata atatctgtaa
     2641 tactcctttg gaatatgtta tgaaggcaga taaggttgct aatgatatga tgaggcttag
     2701 caaggacaag ggggtattaa atgtatttgc tgctggtaat gaaggaattc ttagccctgc
     2761 tttgcatgcg attttaccaa gttatgatga atctttaaga gcttggttgg ctgttggagc
     2821 tttggatgca aatgagatta ctttagaatc agatgggact ttaataatta aaagtcaagg
     2881 tttggctgat tttagtaatg gttttaaggg agctacgaat ttttctttag ttgctgctgg
     2941 agtaaatatt aataatgttg attcaagcac taatgataag tttacaaaaa aaagtggaac
     3001 ttctatggca gcacctatgg taagtggaac agcggcactg gtcaagcaaa atttcccctt
     3061 tttggatggt aagcaaattg ctgatatact gttaagtaca gcaaataaaa attataaggc
     3121 tccaaaattt actgttaaac aagtaaccga tggaacaaat caacctaaat ttcttattgt
     3181 gtatatttcg caagatccac ctaggataga agatgaaata aaacgggatt taaaacagct
     3241 ttacaatgga atacaagttc aagttaatgg acaatggatt gattatagtg attatatttg
     3301 ggataataga gatagtgcac agtcacaaaa acttaatact tctactatta gttctattaa
     3361 tggagtagtt agagttgaga aagaagaatt atttggacaa ggaattttag atgcacaaaa
     3421 ggcgttaaaa ggactgagta ttttagatgc aaacagactc agtgatcagg atgtattaaa
     3481 atatgagcaa gaacctaata cagcttatta tactataaac actgcaggtt atgatgctga
     3541 attttctaat gatattagtc aaagaaaatg ggatgaaagt actcatttat caagtgctat
     3601 taataaacct acacatttag ctaatcttaa cataggatta tctaaagaag gtgaaggtat
     3661 tttgattatc agtggtcaaa atacttatga gggtgcaact ttaatcaaac aaggagaatt
     3721 aaagcttaaa ggaaaagtta aaaataatgc ttatgtagaa caaaaagcaa tattaagcgg
     3781 taatggtatt gtagggcaaa atttaaacaa taaaggcata gttagacctg gaaatgaaga
     3841 tttgaatgat ttaaccgtgc aaggaactta tactcaagaa ggagttgatt ctaaattgca
     3901 acttgatttt ggtaattata aaaattctaa actgattgca aaaacttatg atattaagag
     3961 cgggaattta gaatatattc ctttacctaa atactatatc ttaaataagc cagtgaaaat
     4021 taatttagga gatttggaaa aaagtttatc atcttttaat catgttttga tacaaaatac
     4081 ctatgcttta aattttgatt ttgttttaag tgatgattta gtgagtatta ataaaacctt
     4141 aataaaacct aatttaaagc caaatgctta cgaaattcct aatacaagct tgggaaatgc
     4201 tttaagacaa ttgcgatcta gggcagactt gagtcagact tatcaggaat tttttgcttc
     4261 tttagataat ggaatagatg taaagactaa attaaataga atagaaggtt cagggtattt
     4321 aagcactttt agtaatcata atcaatctaa tttaatgcaa aataatatgt tatttaccct
     4381 tcatcctctt aatattaata attttgcaca aaacaataat atcttacttg ctagtactta
     4441 tttacctaga atttttagca atgaagaata tttttggcat cttactccaa gttataaata
     4501 ctataaagat aaagattttt caggtcaaaa aacaggtgct aatatctctt taggagaaaa
     4561 tttctcatca ggctttttag cttatgcttt atctctttct agcgctaaat ttaattttaa
     4621 taatggtagt gatttgaaga gttataacat ggatttattg cttaattata accatgattt
     4681 agattttata aaaatattaa gtggattagg tataggtgta ggatttaata ctcttaatcg
     4741 ttttgtagta gagcagccaa ttgaaggcaa atataaaaca ttgcaaactt cagcccagct
     4801 tggtgtaact aaagatatta ttttaggtca agattttatt tttaatcctt taatgtattt
     4861 tacacatagt tttttttatc aagaagattt taaagaaaat aaaagtcctt ttgctaaaaa
     4921 ttatgaaagt ttaaaacatc atagcataaa tgcaaattta ggttttaatc ttgctaaaaa
     4981 tatagagcaa gatgattatc aagcttcttt ttctactttt gtaatttttg aaaaaagaat
     5041 ttatggaaga actttagaaa ataaggctag ttttgttgat tttcctattg cttttattca
     5101 aaaatataaa ttaaaagata atattttaag tcaaggtttt a
//
LOCUS       DARGEM010000110         5127 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.110, whole genome shotgun sequence.
ACCESSION   DARGEM010000110 DARGEM010000000
VERSION     DARGEM010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5127
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.110"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(95..1033)
                     /locus_tag="SFZ78_001481"
     CDS             complement(95..1033)
                     /locus_tag="SFZ78_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212325.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(1026..1709)
                     /gene="rlmB"
                     /locus_tag="SFZ78_001482"
     CDS             complement(1026..1709)
                     /gene="rlmB"
                     /locus_tag="SFZ78_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG8212326.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(1711..2547)
                     /gene="rsmI"
                     /locus_tag="SFZ78_001483"
     CDS             complement(1711..2547)
                     /gene="rsmI"
                     /locus_tag="SFZ78_001483"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG8212327.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQDWV
                     KF"
     gene            complement(2550..2750)
                     /gene="rpmE"
                     /locus_tag="SFZ78_001484"
     CDS             complement(2550..2750)
                     /gene="rpmE"
                     /locus_tag="SFZ78_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG8212328.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(2829..3485)
                     /locus_tag="SFZ78_001485"
     CDS             complement(2829..3485)
                     /locus_tag="SFZ78_001485"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG8212329.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(3487..3894)
                     /locus_tag="SFZ78_001486"
     CDS             complement(3487..3894)
                     /locus_tag="SFZ78_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212330.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(3894..4319)
                     /locus_tag="SFZ78_001487"
     CDS             complement(3894..4319)
                     /locus_tag="SFZ78_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8212331.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(4319..4900)
                     /locus_tag="SFZ78_001488"
     CDS             complement(4319..4900)
                     /locus_tag="SFZ78_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG8212332.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(4897..>5127)
                     /locus_tag="SFZ78_001489"
     CDS             complement(4897..>5127)
                     /locus_tag="SFZ78_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8212333.1"
                     /translation="DSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLT
                     KNAQKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
BASE COUNT         1701 a          794 c          635 g         1997 t
ORIGIN      
        1 tttttactag gattgtttac taaatttttt gctaattcaa gacttgagat tgcaaaagat
       61 atattaaccc aaaaagtaag aataataatt ttttttacca ttctttacct ttatttaatt
      121 ttacaaattc agcagctgaa atactggtaa tttttccatc tttaatcaag aaacgttttg
      181 aaattcctac aggaaatttt tgttctttat tttcttgatc aaacattgtt aaagctgcag
      241 cccctgttaa aattaactga tctttatcta aagaaatatt aaaatctttt tctttaacaa
      301 agcttgtttt tttaaggctt tttaaatcta tcaaacctat ccaaatcttg gtagaggttt
      361 taaaatgtgc ttcttttaaa gaatcagttt ttagtgtatt tgtgtcttct tggatttggg
      421 tatttttttc ttcatcgagt agagttgtgt tattttcact gatattattt tctatgctta
      481 tgtttttatc attttcttgt aatgaggtgt tttggcttgg taaaacgctc tctgtttgat
      541 ttgtttcttg tgctttattg ttgtctataa caacaacatt gtttccactt aaagatttta
      601 aattttcttg tgcttgtcct attatgtcta taactgttgc actagtatta ttttgttcat
      661 ctttgaaaaa agttttaagt gtatcaaaat aataaattcc acttcctata atcactaaaa
      721 caataagaac aatcaaaaaa ggccaagcgt tagaggattt ttgactataa gcatctagtt
      781 ttggggttat catttttgat tttgtttgtg gagtaggatt gttttcgtta agataagctt
      841 catactcttc gttaaaatca ctaaagtcga gttcgtattc tctgcttaaa attttaacaa
      901 aacctttaac attaaaacga cttaaaacag caaaattctt ttctactaaa gcttcaagaa
      961 aatcaagttc aatttgcgtt tttgctgcaa cttcttttaa atttaattct tgtatttttt
     1021 tccaattaag catttaacat cctatcacaa agtattgcaa aagcagcgct gacattaaga
     1081 ctatcaaaat tatttttcat cgcaatgccc acacattcat cgcacttttt tataatttta
     1141 gagcttaaac caaaaccctc actacccaaa actaaaactt ttttaccatt gcttattttt
     1201 acactgtgaa tttcttttcc cgagccatcg ctcgcataaa aataaaaacc tacttgtttt
     1261 agttcgttta ttacacttaa agcatcgttg cttattgcaa taggtaaatc aagagccgct
     1321 ccgctgcttg tgcgaattac tccttccatg gctaattttt caccaataaa aattaaagcc
     1381 ccaaccccta aagcataagc tgtacgcgtg atagccccta tatttcctac atcgctaatt
     1441 ccataaagca taacaataaa atcatttttt ttgatctcat ttaaattcgc aaaagaactt
     1501 tctttaatat ctagcaaaaa accttgatga tttccacctt tcgcataagc ttgagcagtt
     1561 ttaaaatcaa gttttttgat tttaaaacct gattttgcga ttttggaaaa agtaatttta
     1621 tcacattctt ttgctaaata aagctcattg atacagtctt tatgatattc taaaatataa
     1681 aaaaatattt gcttcccata aactatcata ttaaaatttt acccaatctt gacttaaaag
     1741 cagtttttga taaatttctt ttgcattttt tccattgatc tttgataata attttgcttt
     1801 tgcttttaaa gacagctcta aatccataat atctttttca caaagagtat tttgcaaaaa
     1861 attttgctct tttgattgca gtactacaac ccattcaccg tttaaattag acttttttaa
     1921 aatttcagaa agctctttag cattgccttt aaattttttt tcaaattttt tactgatttc
     1981 tttaatcaaa aaaatttctc tttggctgtc tagaatcata atctgttcta ctaaagataa
     2041 aatacgcttg ggggattcgt aaataatact tggataagga aagtttaaaa ttttttctat
     2101 atctttttgt ctttctttgc ctttatttgc taaaaaacca ataaagataa attctttttg
     2161 acaaaatgct gagcttacaa gagcaactaa ggctgcattt gcacctggta aaatttcata
     2221 ggtgatatta ttttcttgtg caaattctac caaagccttg ccaggatcac taatccctgg
     2281 cattcctgca tcgcttaaat aagctacatt tttttcaaat atctttaaat caatacttgc
     2341 taaaacttct ttttcattat gggagtgtaa ggctataaat ttagaaatat gtatatcagt
     2401 gtgaaatttg gtatttaata acgaaatcaa agacttactt actcttgtat cttcgcaaaa
     2461 cacaagatcg caagtcttta aaagttctaa ggctctaaaa gaaatatcgc ttaaatttcc
     2521 tatgggagta ggaataaaat aaagcataat tattgcattg cgtatttttt cttaaatttc
     2581 tctacacgac ctgcagcatc tacaattttt tcactgcctg taaaaaaagg atggcaattt
     2641 gaacaaatat ctactcttaa ttctgctttg tttgactttg ttgtaaaagt atttccacaa
     2701 gcacaactta ctttgcattc tacatattct gggtgaattt cttttttcat tagttttcct
     2761 taaaaattaa aacaataagc cgtgattata aattatttaa cataaaaaag agattaattt
     2821 aagaaaagtt aaagcaaaat ttttgaagct atagctataa tagctgtttg actttttaga
     2881 atattagagc ttttaagaga gattttccgg ttaaacaata atctctcatc attgttaaat
     2941 ccaccttcag gacctataaa atataattct ttttcatcga aatgactttg ttgttctcct
     3001 tgaaaatcaa ccataattgc atttggaaat ttttgaacaa attcttgagt gctttggtgg
     3061 ataattaaat ccattttagt atttctaccg cattgttcac aagaagaaat aatgattttt
     3121 tcaaatcttt ctaaatcgat tttaaaattt ctttgtgaaa aatttgtaaa aaccaaatgt
     3181 aactttttta ctccaagttc atttaagaaa ggtagagttt tttctaaaat tttaatatct
     3241 ataatggcta aggctaagtt taattcactt tgttttatat tttgtgattt tttgtttaaa
     3301 aattttaaag tgcaagaatt tcttgttaaa tttgtgattg tatagttgta aagaaaatta
     3361 tcttgtaaat ttctaagatt tagctccgaa ttttccttta ctcttcttac ttttaaatgg
     3421 ttaaagtttt caccttgaag ttgtataaac tcttctccag cttgcttgtt atacaaaaat
     3481 tgcattttat agatatcttt ctattaaaaa aggcaaaaac aataaaaaaa tttcaaaagg
     3541 taaaatcaaa caactaatcc atctaaaagt ggcatatttt ctaaatcttc ttgctttttt
     3601 aaaacaaaca aagtgaaaaa ttgctaaggc aaaaattaag atccaagaaa aaatcattac
     3661 ccagatattg acattcattt gaaattgttt cattgctgat aacaaacaac ctgtaaaaat
     3721 aatcaaagct aaaaataaat aataaattgg taaaaataat cgtattctgc gaataaaaat
     3781 gaattcggtt ttaaaatttc cttgtgttag tataagataa aaaagcatta aaaaaccgct
     3841 cgcataaaga ctataaagat gtaaagctaa aaagaattcg taactttgat ccattatttt
     3901 cctttgttta taaaatcagc taaattttga atttgttcat cacttaaaaa actatggttt
     3961 ttatctttta tcgtttttat tttttgtata aaaattttat tgctcaaggt tttaatggcc
     4021 gtgctgtttt taggttttaa ttcccctttt tctccatgac aagtggcgca tttttgttta
     4081 tataaagagt tgataatact aggattgact tcatgttcat catctgaact ttgtgcttca
     4141 tcatctacag gtaaaggcag gttggagtca cttaattctg ttttttcatc gttttgttct
     4201 atttggacta cttcttgatc tgtattttga gtcttggaaa tatttttttc atcattagaa
     4261 caggcagata aaactaataa aaaaaaactt aaggcaatta aaattttagc tttttgcatt
     4321 aaatctcctt tggatttata aaaatttctt cattttttaa tttgttataa aaatctatat
     4381 cattccattc tgctttaatg ccattggaaa attctatgtc ttgaagtgaa atttttggca
     4441 ttagctcact ataggcatct tctctaaaac cttgtgcata acctgttctt gtttcatgaa
     4501 caatgatgct ttgtaaagtc actccttgtt ctccatttac catttttgtt tgttttaata
     4561 aagcatctat aagtatgaaa aatacacgac aaaaattttc agcacttaca ttaacaggca
     4621 ggcaaatcca acgacttgaa tattttttca tttcttctaa atattttgcg tcatcatatt
     4681 taaaaagagt gatagcatga tcaaaactat caataatttg gcgtatatag gtttttaaaa
     4741 gtccaaaatc atagaccatt ccagcattat ctaaatattt gctttcaagt aaaacttcaa
     4801 ctttgtaaga atgtccatga atgctacttt tgcaacgctt agaagaacaa aatctaacaa
     4861 tgtgtgcgtt ttcaaattca aataattttc ttataatcat acaccctctt tatcgttcca
     4921 aagacgaata tgaattctat cagaataatt ataaccattc ttaatacaaa attcagcaat
     4981 tttttgagca ttttttgtaa ggttttgctc attttcaccc ataggcatac aaaaaatttg
     5041 atttggagct tcttttagaa tttcattgat ttctaaaaat gaattatcaa gagtattggc
     5101 atctaaaaca aatttataaa aactatc
//
LOCUS       DARGEM010000111         4997 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.111, whole genome shotgun sequence.
ACCESSION   DARGEM010000111 DARGEM010000000
VERSION     DARGEM010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.111"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..473)
                     /locus_tag="SFZ78_001490"
     CDS             complement(<1..473)
                     /locus_tag="SFZ78_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEG8212334.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNVASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKS"
     gene            600..1184
                     /locus_tag="SFZ78_001491"
     CDS             600..1184
                     /locus_tag="SFZ78_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG8212335.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIAEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(1228..1611)
                     /locus_tag="SFZ78_001492"
     CDS             complement(1228..1611)
                     /locus_tag="SFZ78_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212336.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGNSDFMDILNK
                     ANEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(1688..2023)
                     /locus_tag="SFZ78_001493"
     CDS             complement(1688..2023)
                     /locus_tag="SFZ78_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212337.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(2013..3590)
                     /locus_tag="SFZ78_001494"
     CDS             complement(2013..3590)
                     /locus_tag="SFZ78_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8212338.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAIFWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGISKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAINPDSGSIHLGVTIELGYFPQDASNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(3714..4247)
                     /locus_tag="SFZ78_001495"
     CDS             complement(3714..4247)
                     /locus_tag="SFZ78_001495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212339.1"
                     /translation="MKNILLSLMFVFLFTGCFNNKPKCDDEDVKLTLKSILDNDEWVY
                     VEYGLNEQSLRALRINSNGMDIRDLEAALSTDTLGVLRAHFKPLLDLKDYANEVVYTS
                     FESFITKDSKDKKTSFCMGQLKFTYPQMPNEMREKYSRGTLKGVLFDGGEYETQISYS
                     ARFSDDKKQVFVELLDY"
     gene            complement(4247..4507)
                     /locus_tag="SFZ78_001496"
     CDS             complement(4247..4507)
                     /locus_tag="SFZ78_001496"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212340.1"
                     /translation="MSEKYTPFEVEPTLLYEKDTYQIVAGKAYTNKDEQFCIGLKSNG
                     FPINSYLIFPPQLSSDLLKSLLGQDGAKNDEIIEFIKIIMEK"
     gene            complement(4550..4967)
                     /locus_tag="SFZ78_001497"
                     /pseudo
     CDS             complement(4550..4967)
                     /locus_tag="SFZ78_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1777 a          914 c          591 g         1715 t
ORIGIN      
        1 gatttatcaa caaataatac tataatcaat aatatataaa aaagccattt tttttcatat
       61 tcgtaagcac ataatatagc aagggttaaa aaaatcacca aagatgcgac attaaccagt
      121 aaagcacttg caacagtacc cggcaataaa acaaataaca ataaagaaaa aaaagcatca
      181 attttagttt tagtatattt taaagctagc aaatacaaaa gcaaacaact taaaaaatga
      241 aaaaataaaa aaggaagcct taaaccaaaa tcattttgcc caaaaataaa agttccaaaa
      301 tgagatatat aataaagcaa actatgggaa aaaataagtg atttaccctg ctcaccaaaa
      361 taaatatcag cttcatcagc actaatactc agtgttgaaa ttccataaag caaagccaac
      421 aaatcaagac taagtaaaat gatgataagt ttataatttt tgattttttc cataatgaaa
      481 attttacaaa attaaactta aaatatcaat gcaaatcata caaatatcaa atatcttaaa
      541 aattaacatc aaattgattt tagtttttat aagtataatt ttaaacaaaa aaggcaaaaa
      601 tgcaaactat tgatcaaatt tttcaaacac aaatcgatat taaaaaatct actttcttat
      661 cttttctttg cccttttaaa gattttaaat ttttaataga aacactaaaa aaagaacatc
      721 caaaagccgt tcattttgtc tatgcttatc gtgttttaaa tgattttaat caaattgcag
      781 aagataaaag tgatgatgga gagcctaaag gaacttctgg aatgccaact ttaaatgttc
      841 taaggggcta tgatcttatc aatgcggctt taatcactgt aagatatttt ggcggtataa
      901 aacttggtac agggggactt gtaagagcct atagtgatgc ggcaaatgcc gtgatcaata
      961 attcttcttt actttcattt gaattgaaaa aaaatataac cattgctatt gatttaaaaa
     1021 atttaaatcg ttttgaacat tttttaaaaa cttattcttt taatttcaca aaagatttta
     1081 aggattgcaa agctatatta catatcaaat taaatgaaaa agaggagcaa gaatttgaaa
     1141 ttttttgtaa aaattttgca ccttttgaaa tagagaaatt ataaattctt gcaagtaaat
     1201 acaaaagctc caaaatggag cttttgatta aattgcgttc aataaatcat ttaacaaagt
     1261 attattctta ctttgttcat ttgcaccttg ttgcgcaaga tcattgtgaa cgctagcact
     1321 ttgagctctc atagacaact cgccttcatt ttgtctaaaa cgataagcgt aaacatttga
     1381 catttgagca taattactta aatttgaatt tgagttttgc gcattgcttt gaaaactatt
     1441 gctagaattt aaagcatctc cgcttgactt ctcattcgcc ttatttaata tatccataaa
     1501 atcagaattt ccagatgaag aataatcttc aacctgttta tccacctgtt tatactgacc
     1561 actaatagca tcgtattcat acgagctgat cgttctataa tttacctgca tagctttctc
     1621 ctttcaaaat atgcaaaaac tatacaagca aaaagtattc ctttttttat gtaaaaatta
     1681 atgtttttca atcatgatga gtaggcaaat gctccacatc aagctcatta ttggctataa
     1741 attcttcctt ggctttttta cagttttcat cacgcatttt gcggtattca ttgcgaatcg
     1801 tgatttcttt atcgcttaga ggtctatctt ctaaaaaact gatatgaaaa taagtatcat
     1861 cgctctttga ataagtttta taaaaatcta tataatcaaa ataatccttg ccattatcaa
     1921 actctacgac ttcttctata taaatcgtag gcccaaaacc cttgtgattt tgcgtatagt
     1981 gcccaaaacc tgcgctgtat tgaattctaa atttagccat cattttctcc taaaaattct
     2041 tgataagttc cacgaaaatc tgtaagctta ccattttcta aatgccaaat tctattagca
     2101 aaagcagaaa ctaactccct atcgtggctg atacaaagca ctacaccttt gaaattatac
     2161 aaagcttcac ctaatgcaat aatactttca agatctaaat ggttatcagg ttcgtctaaa
     2221 agcaagaaat tcggacgctc tagcattaaa cgagaaagca ttaaacgatg tttttcaccc
     2281 ccacttaaac ttgctgccat tttttcttga tcgctgccac taaaaagcat tctacctaaa
     2341 cacttgcgga tttcatctag atctttaaat ttttcactca tcagccattc ataaagtttc
     2401 aaattttcac aaattaaatt acttgcatct tgaggaaaat atccaagctc tatagttacc
     2461 ccaagatgta tagatccact atctggattt atagcattgg cgatgatttt tgccaaagta
     2521 cttttgccca caccatttgc cccgatcaaa gcgattttat catttttttc tatttttagc
     2581 tccaaatttg aaaacaattg tttatcataa gccttgctta tacctttaaa ttctaaaact
     2641 tcattaccta tttcacgatt ggttctaaaa actatgctag gatctctacg gcttgaaatt
     2701 ttaatctctt caagctctag tttttcaagt gccttagcac ggcttgtggc ttgttttgcc
     2761 ttagaagcat ttgcgctaaa acggcgaatg aaattttcta attcttctct ttcttttaag
     2821 gttttatcac gtttaagctc agcttgtttt gccaaaagcg ttgaagccat ataccaatca
     2881 tcgtaatttc ccgcaaaatc acgaatttgt ttaaaatcca catctaaaat ccttgtgcaa
     2941 attttattta aaaaatgtct atcatgagag ataacaacca aagttccttc atgtcttaaa
     3001 agctcatttt caagccaaaa aatcgcctct aaatcaaggt tatttgtagg ctcatctaaa
     3061 aaaagcacat ccgcacccaa aaacaaaact tgagctagta agactttaaa tttatccgca
     3121 ctttgcaagg tgctcatcaa agcatcaaaa tctttaatct ttaaagaact taaaattttt
     3181 tcacaacgcg tttcacaatc ataatttgga tcttcttcag ccgttattat ctcaagctca
     3241 cctaaacgct cattgatctc atctgtaaat tcctcgctca tataaagctt ttctttttct
     3301 tttaaggcct catataaacg cttatttgca cacatcactg catctttgat ggtgtagttt
     3361 tcaaaagcaa attgatcctg tcctaaaact gcgattttta aaccttcatc aaatactatt
     3421 tcaccactac tcgactcaat ttctcctgaa agaattttca aaaaagtcga ttttcccgca
     3481 ccattagcac cgataagtcc gtatctttgt cctcgaacaa gttttaaatt aacattttca
     3541 aataaaagct gatttgcaaa acgcatagta agatttttta cttcaaccat gattttcctt
     3601 aaatttttta cttataaaaa tttttaagaa attgtatcaa aaaaaagact tgaaattaat
     3661 taagtataaa ttttatatag acaatgaaaa taaaatttca ttgtcaaaat aaattaataa
     3721 tctaaaagtt ctacaaaaac ttgcttttta tcatcactaa atctagcact ataagaaatt
     3781 tgagtttcgt attcccctcc atcaaataaa actcctttta aagtacctct tgaatatttt
     3841 tctcgcattt cattaggcat ttgtggataa gtaaatttta actgacccat acaaaaacta
     3901 gtttttttat ccttgctatc tttggttata aaactttcaa aagaagtata aaccacttca
     3961 ttggcataat ctttcaaatc aagcaaaggt ttaaaatgcg cccttaaaac cccaagcgta
     4021 tctgtagata atgcagcctc taaatccctt atatccatac cattagaatt tatccttaac
     4081 gcccttaagg attgttcatt taaaccgtat tcaacataaa cccattcatc attatccaaa
     4141 atacttttta gtgtaagctt aacatcttca tcatcgcatt ttggcttatt gttaaaacat
     4201 cctgtaaata aaaaaacaaa catcaaactt aataaaatat ttttcattat ttctccatta
     4261 ttattttaat aaattctatg atttcatcat ttttagcacc atcttgcccc aaaagacttt
     4321 ttagtaaatc cgagctaagc tgtggaggaa atataagata agaatttatt ggaaaaccat
     4381 ttgattttaa gcctatgcaa aattgttcat ctttatttgt gtatgctttt cctgcaacaa
     4441 tttgataggt atctttctca taaagtaagg taggctctac ttcaaaaggt gtatattttt
     4501 cactcatttt catctccatt ctttcattgg ttttaaaata aaataatcat cactgtatga
     4561 tatttgcaat tttttcataa ttttgtttgc gaagtttttt acctactaaa aacatatcta
     4621 caatccacca aatagtccaa ttgactatca ctaatatatg ctatgttctg caaagattta
     4681 cttgcaacaa tattaaaaat tattggaata atcacaaatg ctaaacgcac aaaacctaaa
     4741 accatatcac ctatcataaa acgccctact ccaaaagggc caaataaaaa agttcctacc
     4801 caaaacacca aagtagggct ttttagttta agcataggaa gttgatttaa cacatctttt
     4861 tttctttctt cgcttaagcg ttcaaatttt tcttttagcg taattgccgc taaaccatct
     4921 cttggtaact tatcgccaat attagaaaga actgaattaa aatccataac ttctccttga
     4981 aaattaaaaa atatctc
//
LOCUS       DARGEM010000112         4868 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.112, whole genome shotgun sequence.
ACCESSION   DARGEM010000112 DARGEM010000000
VERSION     DARGEM010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4868
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.112"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..426)
                     /locus_tag="SFZ78_001498"
     CDS             complement(<1..426)
                     /locus_tag="SFZ78_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8212341.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFA"
     gene            complement(429..1391)
                     /gene="moaA"
                     /locus_tag="SFZ78_001499"
     CDS             complement(429..1391)
                     /gene="moaA"
                     /locus_tag="SFZ78_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG8212342.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMINDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDILDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(1404..1919)
                     /locus_tag="SFZ78_001500"
     CDS             complement(1404..1919)
                     /locus_tag="SFZ78_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212343.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(1916..2413)
                     /locus_tag="SFZ78_001501"
     CDS             complement(1916..2413)
                     /locus_tag="SFZ78_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212344.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(2404..3288)
                     /locus_tag="SFZ78_001502"
     CDS             complement(2404..3288)
                     /locus_tag="SFZ78_001502"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG8212345.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            3359..4228
                     /gene="miaA"
                     /locus_tag="SFZ78_001503"
     CDS             3359..4228
                     /gene="miaA"
                     /locus_tag="SFZ78_001503"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG8212346.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(4214..4777)
                     /locus_tag="SFZ78_001504"
     CDS             complement(4214..4777)
                     /locus_tag="SFZ78_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG8212347.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         1796 a          733 c          604 g         1735 t
ORIGIN      
        1 agcaaaaata cattctttgt aaaaaggata tctatcaaaa tcaatttcta tgcttccatt
       61 gctttcaaag tgtatttcga atttattttt taataacatt tggataaatt ctataaattc
      121 aggattttca taatggatta atggctctcc acctgtgata acaactatag gatcaaagtc
      181 ttgttttaat tttatcactc tttttaaaag ttcattagca tttaaagttt cataactttc
      241 tttaaaatct tttgtgaaaa cagctcttat cgtgtcacat ccaatgagag ttttatcgtt
      301 ttttgatatt tttacattaa aacctaaaca gttgaaatta caaccagcaa aacgcataaa
      361 aatagctaat tttccattat atttaccttc tccttgaatg cttaagaaac tttcaacaag
      421 ttgcaaaatt aacctccagt ttgataaaaa gcacgagatg aggtttcatt atcaacaaca
      481 ctccatttat ttttttctgg tttatttctt aatacttctt gtaatatttc tacagcggct
      541 ttaatatcac cttttcgaac cgcttctttt atgcttaatg cttcatcaaa ataaagacaa
      601 ggtattaaca agccttcagc acttaagcgt atgcgattgc aagaatcgca aaattcatgg
      661 ctatgaggat ctataattcc aaattcataa tcatctgcct tgtaaatact cacaggtgct
      721 ttttcatctt tttttataag ttgaatttga tatttttgac tcaaaatttg tataatttca
      781 tctcttttta atccttgtaa tttaccataa gcatgagtat tttccataaa ttctataaag
      841 cgaatttgag ctttttttga ttttgcaaat tccaaaagag atatcagttc atcatcgttt
      901 aaatttttaa gagctacagt attaagtttt actttcaaat ctagatttaa agcttcatca
      961 attccagata aaacactatc taatatatct ttttgcgcaa gagtttttgc ttttttgtga
     1021 tctagggtat caagtgaaat attaagtcgt ttaagtccag cattttttag gtctttagca
     1081 aagtctttta gtaaaaatcc atttgtagtt atagcaaggt caatatcgct tttataatcg
     1141 ttaatcattt ttataaaaat acttaaatct tttcttaata aaggttcccc acctgttata
     1201 cggatttttt caattccttc gtctatagct gctttaacaa ataaaaaaag ttcttcgaag
     1261 cttaataaat tttcttttgg ctgataatcg aaaggaattt ttggcataca ataaaggcag
     1321 cgaaagttac atctttgtgt aactgaaatt ctaagataat ttatctttct accgaattga
     1381 tctataagca tttattttcc attctatttt attaatttct taaattttaa gacaagttct
     1441 acatttccag tgccaatgcg taaatcttta gcgatttgtt ctatgctttt tccttctttg
     1501 aaaagatttt ctattttttg ttcttctgta tcgtaatttg gtgtaagttt agccatgctt
     1561 tgtgcttttt gttccaaatt taaaagacga ttttgttgtt cattttgaaa atcttctatg
     1621 atatgttcca tagtttttag tgttcttaaa acaggagtga tttttgaact gatttgttta
     1681 tcaagttcaa tcataatttc ttcttttaaa agagaggttt tatagtcttc atcctcttcg
     1741 ctatcatctt taactcctaa ttctttacga aaataatgaa gttctttggt aatatcttct
     1801 atcacatttt gaagttttgc tatttttgca ttattttctc tttctttgat attcatgtag
     1861 gctagcattg caattaaaag cacaattata aaaactaaat aaagtacatc atcactcatt
     1921 cttggccttt cttatttctt atcatatttc tttggatttc aacaacaaaa gcatcaaaag
     1981 ccattttgtc ttcaggctta attttgataa tttttgccaa tgtttgactt tgagctttga
     2041 taaaaatagc tattttttga ttatttaaat caaatcttaa ataatattct ttatcttctt
     2101 ctaaaatagt atccaaaaaa tttagatact caaaatttaa agattctatt accccttttt
     2161 gcttaagtgg tataagttct ttatttttat ctaaagaatt ttcaagcctt aaaatatctt
     2221 cttttagact taaaagaaga tcaaaaataa ttttttcacc ctcgtcaaaa tcaatgcgta
     2281 aagcaagttt tttccatttt aaaatttgag aaattgctcc aagttttagg tattctccaa
     2341 gaaaacggtt attttctatt tcacaacatt ctaaatgagc ttcaaatcct gctttaaaaa
     2401 gtgctaattc cataataaat caatccaaat aaaaataaaa aagataatac ttaaataacc
     2461 atttagagta aaaaatgctc tatcaatatg agcaaaattc ttgtgaacaa ttttatgttc
     2521 caaggctaaa ataataccgc ttataattac cccaataagt gctatttttc caagtgctac
     2581 accccaaact tcccacacaa aaagaagcca aaataatacc gctaaaatat ggcaaaaagc
     2641 tgatataaat aaagtagcct ttgaaccaaa tttagcagga atagagtgaa gtcctatttt
     2701 tttatcatac tccatatctt gtaaagaata aagcagatca aacccagctg tccaaaaagt
     2761 tacacctaaa cataaaataa cgctataaat gtgaatttca cccataatta taacacttcc
     2821 tgcaataggc gcaagtccta aacaaaatcc taaaactaaa tgtgctaaag aactaaagcg
     2881 cttaaaagct gaataaatag ccaataccaa aagcacagga aaagacaaat aaaaggccaa
     2941 agtattaata aaataagaac atgatataaa aataagtgca ttaataatga taaaaatcca
     3001 tacgcttttt ctacctattt ttccactgac attagggcga tttgcacaac gaggattatc
     3061 cttatctata tcttcatcca ttaaacgatt tgtagccatg gcaaaatttc ttgcacttac
     3121 cgcacaaata atgcctaaaa tcaacgcctt aaaaccaaac caagcagtgt catttgcaag
     3181 ttttgatgct acaatcatag aggaaaataa aaaaggcaaa gcaaaaatag aatgcttaaa
     3241 tactacaagt tctaaaatat ctttaaattt tatccagaat gtgttcattt ttctacttta
     3301 aaatattttt tgctatgatt ttactaaaat ttttataaat tttaggataa atattaaaat
     3361 gttttttgaa atagcattaa taggaacaac cgcgagtgga aaaacataca tagccaatac
     3421 tttagcaaga gaatttaatg ctgttgtttt aagtcttgat agtctttgtg tttataaaga
     3481 gattaatata gcaagtgcca agccttcaca agatgatctt gcgagtataa aatactttgg
     3541 ggtaaattta ttgagtgtga atgaacattt taatgttgag ttattcataa gagaatatca
     3601 aaaagcaaaa gaatttgctt tagctagaaa tttacctcta attatagtag gtggaactgg
     3661 attttattta aaaactatga tagatggttt aagtgaaaaa accttagagt caaagagttc
     3721 tttaaataac gatgaaattt atgctctttt attaaatatt gatccaaact ataaaataga
     3781 aaaaaatgat acttatagat taaaaaaatg gctgggtatt tatgaacaaa caagagaaat
     3841 tcctagtgaa tttttaaaaa gaacacaaaa aactggggtg cttaaagata tagaaattta
     3901 tgagcttgcg tgggataaag aaattttaaa aaaacgtatt aaaactagaa caaaagaaat
     3961 gcttgataat ggacttttag atgaagcaaa aattcttttt tctaaatttg atcataaact
     4021 taaagcatta aattctatag gtttgaaaga gtgtaaagaa tatttagatg gagaaatttc
     4081 ctttaaagag cttgaaaatt taatcacgat acatactaca caacttgcca aaagacaaag
     4141 aacttttaat aaaaaatttc aaagtaaagc cttggaattt gataaagctt tagctacttt
     4201 aagaatgaaa ttttcaatcg aaaaataaat gttctattag aatttttact cctagtataa
     4261 ttaaaaccaa tccgcctaaa agttcagctt tatttttaag ataaattcca aatttattcc
     4321 ctatttttag agcaatgata cataaaatga aggtgataat acctattaaa aatatagcta
     4381 ataataaatt tatatttaaa aatgcaaaac tcacaccaac tgctagtgca tcgatactcg
     4441 tagcaattgc taaagctagc atggttttaa agccaaattg attggcatta ctatcgcaat
     4501 tttcattttc caatgactct ttgatcattt ttaatcctat taaagaaagt aaaataaaag
     4561 ctatccaatg atcaatactc gcaataaaag atgcaaaagt tatgcctata aaataaccaa
     4621 tagttggcat caaagcttga aatccaccaa aataaattcc aacaataaga taatgtttta
     4681 aatgtagttt tttaacacta aaacctttgc atagtgatac agcaaaagca tccattccta
     4741 aagcacagga taaaaaaata agactataaa aatccataat aaatcctaaa attttataaa
     4801 aaattgaaga tgaaattata attaaacaaa gataaaaatc acataatttt gatatattta
     4861 attaaatt
//
LOCUS       DARGEM010000113         4813 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.113, whole genome shotgun sequence.
ACCESSION   DARGEM010000113 DARGEM010000000
VERSION     DARGEM010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4813
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.113"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..314
                     /locus_tag="SFZ78_001505"
     CDS             <1..314
                     /locus_tag="SFZ78_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG8212348.1"
                     /translation="VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEK
                     YENLGFWVCEGHYHQNHQINKENIKYLNLASFAYKRSFFVVEYQQEIKFREQKLRGQN
                     V"
     gene            307..1263
                     /locus_tag="SFZ78_001506"
     CDS             307..1263
                     /locus_tag="SFZ78_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG8212349.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            1267..3576
                     /locus_tag="SFZ78_001507"
     CDS             1267..3576
                     /locus_tag="SFZ78_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8212350.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            3581..4102
                     /locus_tag="SFZ78_001508"
     CDS             3581..4102
                     /locus_tag="SFZ78_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG8212351.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            4102..4725
                     /gene="serB"
                     /locus_tag="SFZ78_001509"
     CDS             4102..4725
                     /gene="serB"
                     /locus_tag="SFZ78_001509"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG8212352.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
BASE COUNT         1781 a          652 c          956 g         1424 t
ORIGIN      
        1 ttgtattttt gaatttttta aatattatta ctcgtaattt tatttcaaat aaaattcttc
       61 aaaatcaaaa caaaaaaaac cttttttatc aaataaaaga ttttgaaaat ttagcgaaaa
      121 aaagatatga aaaatatgaa aatttaggat tttgggtatg tgaaggacac tatcatcaaa
      181 atcatcaaat caacaaagaa aacattaaat atcttaactt agctagtttt gcatataaga
      241 gaagtttttt tgtagtagaa tatcagcaag aaatcaaatt tcgagaacag aaattgaggg
      301 gtcaaaatgt ttgatgaaaa tatcgtgaaa acgggttcaa atgaaatgga gcttgtcgat
      361 ttccgtatct ttaagcaagg gcacgataaa gtctatgaag gaatttatgg tgtaaatgtt
      421 tctaaggtaa gggagattat aaaaatccca agccttacag aacttccagg tgtacctgat
      481 tacatcgaag gtatctttga tcttcgtgga gtggttatac ctgtagtcaa tcttgccaaa
      541 tggatgcaaa tcactgagcc agaaagcact atgctaaaac ctagagttat tattactgaa
      601 tttagcaata ttcttattgg ttttatagtt cacgaagcaa aaagaattcg tagaataaac
      661 tggaaagata tagaaccagc aactttttct acaggatcag gtgctttaga taaaggtaaa
      721 attacaggtg taacacgcat tgaaaatgat gaagtgttgc taattttaga tcttgaaagt
      781 gttgttgaag atttaggaat ttacgctcca aaaacagata tagattttgg aaaaatagaa
      841 aaatttactg gaacagcact tatacttgat gacagcatga ctgctagaaa acgcgtcaaa
      901 gaaatgatgc aacagatggg ctttcaagtt gttgaagcta aggacggcgt agagggcata
      961 aacaaattag aagaattaag ccaaatttat ggtgaaagtt taaacgatac tttaaaaatt
     1021 atagtaagcg atgtcgaaat gccacaaatg gatggtttcc actttgctgc acgcattaaa
     1081 gaagatccaa gatttaaaga tattcctata gtctttaact catctttatc aaatgaattt
     1141 atgaatgaga aaggtgttca agaagctggt ggagaaggct atcttgtcaa atttaacgct
     1201 agcgatttct tcaatgaaat tgcaaaggtt attaaaaaac atcaatctca agaacagggg
     1261 taaaatatgg aagatatgca agaaatactt gaagactttt tggttgaagc ttttgagctt
     1321 gttgagcaaa tcgaccatga tttagtagag cttgaatcaa atccagaaga tttagaatta
     1381 ttaaatagaa ttttccgtgt tgcacatacg gttaaaggat catcaagctt cttaaatttt
     1441 gatgttttaa caaagttaac tcaccacatg gaggatgttt taaacaaagc aagacatggc
     1501 gagttaaaaa taactccaga tatcatggat gtggttttag agtctattga tagaatgaaa
     1561 actttactta attccattcg tgataatggc aacgatactg ctattggtat ggatatagaa
     1621 ccaatttgcg caagattaac agctatttca gagggagagt ctcctgttgt ggcaacagat
     1681 tcaaatgaaa aatctactcc acaagcagaa ctagaagcac caaaacaaga aatagctact
     1741 ccagaacctg aagtagatgt taatcaatta agtgattctg aagttgaagc tgaaatagaa
     1801 agacttttaa aagttagaaa agctgaagat caagctcgtc gcgcacaaaa gaaacaaaca
     1861 acaaatgcgg cacctaaacc gactaacaat acagcgaata aacctacgga aagtggagag
     1921 aaaaaagttc ctgcttcagg tagtaatgct agcagtatgg atcaaaccat acgcgtggag
     1981 gtaaaaagat tagatcactt aatgaatcta attggggagc ttgttttagg caaaaaccgt
     2041 ttgcttaaaa tttacgatga tgttgaagag cgttatgaag gagaaaaatt ccttgaagaa
     2101 cttaatcagg ttgtaagtca attaagtatt attacaactg atgttcagct tgctgtgatg
     2161 aaaacaagaa tgcaacctat agcaaaagtt ttcaataaat tcccaagagt tgttcgtgat
     2221 ttaagtcgtg aattaggaaa gcaaatagaa cttgaaatta caggtgaaga aactgaactt
     2281 gataaatcta tcgtagagga aattggcgat cctatcatgc atatgattag aaattcatgt
     2341 gatcatggtg ttgaggatcc agcaactcgt gcagcgaatg gaaaacctga aaaaggtata
     2401 gtccaactta aagcttataa tgagggcaat cacatcgttg tagaaattac agatgacggt
     2461 aaaggacttg atccaaatgg cttaaaagca aaagctatag agaaaaattt gattaccgaa
     2521 agagaagcag atcaaatgac agacaaagaa gcttttgctt tgattttcaa gcctggtttt
     2581 tcaactgcgg ctaaagtaac aaatgtttca ggtcgtggcg taggaatgga tgttgttaaa
     2641 accaacatcg aaaaacttaa tggggtaatt gaaattgata gtgagttagg taaaggaagt
     2701 tcatttaaac ttaaaattcc tcttaccttg gcaatcattc aatctttact tgtaggaact
     2761 caagaggaat tctatgcaat tccacttgca agcgttcttg aaacagttag agtgccaatt
     2821 gatgatatct atactatcga aggtaaaaat gtattacgct taagagatga agtgctttct
     2881 cttgtgagac tttcagatgt atttggagtt aaacaagtcc ttgaaagcgg tgatcaaact
     2941 tatgtcgttg ttataggggt agcagaaagc aagcttggta ttatagtaga tactcttgta
     3001 ggacaagaag aaatagttat taaatccatg ggtgattatt tacaaaatat ccaaggtata
     3061 gcaggagcta caatccgtgg tgatggtagg gtgacattaa tcattgatgt aggcgctatg
     3121 atggatatgg ccaaagaaat taaagttgat attaaagcgc aattagaatc aagtgcgaaa
     3181 aaacctaaag aacaaccaag tgattataaa gtcttaattg tagatgattc taaaatggac
     3241 agaactttaa tgcaaaaagc tttagaaccg ctaggagtta gtttaatcga agcaacaaat
     3301 ggtgttgaag cattgaatat tataaaatct ggcgaacatg atattgatgc aatgcttata
     3361 gatatcgaaa tgccaagaat ggatggatac accttagctg gtgaaattag aaagtattct
     3421 aaatatcgca acttaccatt gatagcagtt acttcaagaa caagtaaaac tgaccgttta
     3481 agaggtgttg aagtgggtat gactgaatat atcactaaac cttattctcc agaatacttg
     3541 gaaaatgtgg ttagaaaaaa tttgaaacta ggataagaat atgagtaatg aaaaattaga
     3601 gcaaattttg caaaaacagc aaactcagat ggctggtcct gatgtcgatc aaagagaaga
     3661 tgatatcatc caacttgttg gctttgtagt tggagatgag gaatatgcga ttccaattct
     3721 taatatacaa gaaatcatca aacctataga atatactaga gttcctagtg tacctgatta
     3781 tgttctaggg gtttttaata tgcgtggtaa tgttatgccg ctcattgatc tagctcaacg
     3841 ctttcattta ggaagttcta aaatgacacc tcaaacaaga tatattgttt taagaggtga
     3901 gacaaatgga actggagttg gaggaaatgc tggttttgtt atagatagat taactgaagc
     3961 aattaaaatt cacagaaaca gaatcgatcc accacctgaa actttagtta aagacaaagg
     4021 tatgatttat ggtataggaa aaagagatga aaatatctta actatactca aagtagaagc
     4081 tttgcttaag cgcgaatttt aatgattaaa ctttgtgttt ttgactttga tgctacttta
     4141 atggatggtg aaaccatcga tattttagct acagcgcatg gcaagggtaa tcaaacaagc
     4201 gaaattaccc gccatgctat gactggagaa cttgattttt tcgaaagtct tcaaaaacga
     4261 gtaagctttt taaaaggtat gtcttataaa aaagttttag aattaagtag cacacttcca
     4321 ctaatgcgtg gagcacatga acttatccaa tatttaaaat ctaaaaatat acaaattgtt
     4381 atttttagcg gtggttttca tgaaggcata aatcctgcta tgcaaaaact tggaattaac
     4441 ctcggttttg caaattatct gcatcataaa aatgacattt taacagggct agttggtggg
     4501 gaaatgatgt tttcaaattc aaaaggctta atgctacaac gattaaaaag ctttttaaat
     4561 ttgaaaacag atgaagtgat gtgtgttggc gatggggcaa atgatttggc aatgtttaac
     4621 gaaagtggat taaagattgc attttgtgct aaagaaattt tacgttctca agctgatatt
     4681 tgcatagata taaaagactt aaaagaaata ataaaggtaa tataatgaaa aatttttctc
     4741 tttggtgtga ttttatagaa aatagttttt tagataatga atttttaaat ttattatcac
     4801 atggaattaa tgg
//
LOCUS       DARGEM010000114         4704 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.114, whole genome shotgun sequence.
ACCESSION   DARGEM010000114 DARGEM010000000
VERSION     DARGEM010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.114"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..437)
                     /gene="msrA"
                     /locus_tag="SFZ78_001510"
     CDS             complement(<1..437)
                     /gene="msrA"
                     /locus_tag="SFZ78_001510"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG8212353.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNP"
     gene            complement(479..997)
                     /gene="ppa"
                     /locus_tag="SFZ78_001511"
     CDS             complement(479..997)
                     /gene="ppa"
                     /locus_tag="SFZ78_001511"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG8212354.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(1007..1585)
                     /locus_tag="SFZ78_001512"
     CDS             complement(1007..1585)
                     /locus_tag="SFZ78_001512"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG8212355.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(1582..3333)
                     /gene="aspS"
                     /locus_tag="SFZ78_001513"
     CDS             complement(1582..3333)
                     /gene="aspS"
                     /locus_tag="SFZ78_001513"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG8212356.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            3424..4284
                     /locus_tag="SFZ78_001514"
     CDS             3424..4284
                     /locus_tag="SFZ78_001514"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG8212357.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            4284..>4704
                     /locus_tag="SFZ78_001515"
     CDS             4284..>4704
                     /locus_tag="SFZ78_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8212358.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNF"
BASE COUNT         1491 a          766 c          739 g         1708 t
ORIGIN      
        1 ggattattta taaaataatg ttgatgatag ttttcagctt tatagtaagt ttgcaatctt
       61 gaaattttag taactatttt tttactaaat attttttgct gttcttcaat gaaattttga
      121 gctaaaattt tatcttcttc attttcgtaa aatattattg agcgatattg tatgccaata
      181 tcttcacctt gtttatctat acttgttgga tcatgaattt taaaaaagag tattaggatt
      241 tcaagaagag agatttgttt ttcatcgtaa tttattttga caacttctat gttaccatca
      301 ccattacaca cgctttcata gctaggattt ggttttcctc cgctatatcc aacttcagta
      361 ttgattacac cttttagacg ttcaaatacg gcttcaatac accaaaaaca accaccacct
      421 aaaatgatat ttttcattgc gagttttcct taatcttagc cctttgaaag ggctaagatt
      481 atttatagtt tttgattgct ttttctaaaa tttcaattgc ggctttttca tctttgaagt
      541 cttgcacttt aacccattta tttggttcta aaattttata agtttcaaag aagtttttga
      601 ttttattcaa agttgcctgt ggtaagtctg tataagtttt tatattatca tatctcgcat
      661 ctatttttga atttggaact gcaagaagtt tttcgtccat tccactttca tcttccatga
      721 ttaaaacacc gattaagcgg caaggaatca cagctccagc ttggatagga tattcattaa
      781 gcactaaaat atctacagga tcaccatcat cagccaaagt attagcaata aaaccatagt
      841 ttgctgggta aaacatcgcg ctagccataa cgcgatctac catgatagca ccgctatctt
      901 tatcgatttc gtattttata tttgagccat atggaatttc aattacggca ttgattttat
      961 ttggaatatc tccgattttg attttgttta aattcatttt ttctccttat atactttgaa
     1021 tttttttaat cagttctttc atgtctgcaa cgataggttc gatagcgcgc tctccatcga
     1081 taataaaatg aagttttttc ttttgataaa aatctaaaat ttcatttaaa ggttctgtat
     1141 aaactttcat tctattgtaa aacacttctt cattatcatc tgcgccacga tttctgccta
     1201 aaactctttc tttggcaact tcttcgctta ctcttacttc tatgacgcct ttaagacaaa
     1261 tttcattttg ctcacttaaa accttatcaa attccatcat ttgctctacg cttcttggat
     1321 agccatcgat gatgatagtt ttagttggag cagcttttag agcacaaact atagtattta
     1381 taacaacatc taaaggaaca agattgcctt tggagataaa actatctata gtttttccaa
     1441 gctcgctccc gcttgctact tcagctctta aaagatctcc tgttgaatag tgtgtaatat
     1501 ttgtcgcatc tgcttgtgcg attaaactag catcggtagt ttttccacta cctggtgcac
     1561 ctatgattaa aaacaattct ttcattttat attctccctt aatttgattc ctaattctct
     1621 cattgcttca ttgctagcag gcgatggtgc atctgtcatt aagcattgcg ctctttgggt
     1681 ttttggaaag gctataacct ctcttatgtt gtttgctcct gtaactagca tgatgagtct
     1741 atcaagtcct atagcgatac ctccatgtgg tggagcacca aaacttaaag catcaagcaa
     1801 gaagccaaat ttttcttttt gttgttcttc atcgatattt aaaagtttaa atactttttg
     1861 ttgaatatca tttttatgga ttcttatact acctccacct agctcaacgc catttaacac
     1921 tacatcataa gcaatagatg aaatttcttc taaatcagtc tcatcaatat tttttggcat
     1981 ggtaaaagga tggtgcatcg cagaataact tccgtcatca ttttgctcaa acataggaaa
     2041 atcaacaacc cataagaatt ccaaggcatt tggatctata agttttaact cgttggctaa
     2101 gaaaattcta aatcttccca tataatcaag cacggttttt ttagctcctg caccgaaaaa
     2161 taccacatct cctacttcaa gctcacagcg tttgcttagc tcatttaaat cttcttcgct
     2221 aaagaattta caaagtggac ctttaagccc atctttttta acttgtatga aagctaagcc
     2281 ttgggcgcca aatttacgca caaattcttc aaatctttgc atttgtcttt ttgaaaaaat
     2341 agtatcgcct tttggaacgc gtatggcttt gatgcgattt ttctttgtat ctttggcaat
     2401 atttgcaaaa atttcattat ttgacttagt gaaaatatca atcacatcaa taaatttaag
     2461 atcaaatctt aaatccggct tatcagagcc ataattttcc atagcgtctt tgtattgcat
     2521 ttgtctaaaa ggggtttgaa tttctttgcc gcaagctttg aaaatatctt ttaaaaaagt
     2581 ttcagctacc ttgatcacat ctttttgttc gcaaaagctc atttcaacat caatttgtgt
     2641 gaattcaggt tggcgatcag ctcttaaatc ttcatctcta aaacattttg caatttgaaa
     2701 ataacgatca aaaccgctac acattaaaag ttgtttgaaa agctgagggc tttgtggaag
     2761 agcataaaat tcaccctgat gcacacgaga aggcacgaga taatctcttg cgccttcggg
     2821 agtagctttg gtaagaatag gggtttcaac ttctaaaaat cccatatttg ccaaagaatt
     2881 tctagctgct atacaagctt tagaacgcaa ggcaaaattt tcataaagtt taggatttct
     2941 taaatctaaa aagcgatatt ttaagcgtaa ttcttcattt acactttcat cagcgatagc
     3001 aaaaggaggt acggcacttt cattttctat ggtaagttta gaaacaacta cttcgatttc
     3061 tcctgttttt aacttaggat ttacaagtcc ttcgccacgc ggacgaatag taccttctgt
     3121 aataagtaca aattcatttc ttgcattgga agcgatttca tgagcttctt tactatcatt
     3181 tggatcgcaa acaagttgga taataccgct tctatctctt aaatctataa aaataactcc
     3241 accatgatcg cggtagctat ttacccaacc gcaaagttta acgctttgac caacatggga
     3301 aattcccaag tctgtattat aatgacttcg caaatttatt ccttgaaaaa gattttttaa
     3361 gataatgaac aaaattatag tatttttatt cttttgcttt gctaagattt gatataattt
     3421 tttatgcaaa ataaaataga ttataaaaat attaaaaaaa ttggacttgt tacgcgaccc
     3481 aatgtgagtt tagataagga aattttaaaa cttcaatcga ttttatctat atataaagtt
     3541 gaacttgtat tgtttaaaga aagttctgaa attttagatt tgccaaagta tggattggat
     3601 gatttgttta aaatatctga ttttgttatt tctttaggtg gagatggaac tttgatttct
     3661 ttatgtcgta aagcttgtga atatgataaa gcagttttag gaattcatgc tggacattta
     3721 ggttttttaa cagattttaa agttgatgaa gctgaaaatt tttttcaagc tttttttcaa
     3781 ggagaattta gaatagaaaa gccttatttg ttaagtgttt ttttagaaga taagcaagga
     3841 aaaattttag aaaaattagc ttttaacgat gtggtcatca gtaaaaacaa tcaagcttct
     3901 atggctcata tagaagtttt tagaaaagaa aagaaattta atgaatattt tggagatggg
     3961 cttattgttg caactcctgc gggttcaaca gcttataatt taagtgcaaa tggacccata
     4021 gtttatactt tagctcaagc ttttatctta actcctgttt gttctcattc tttaacacaa
     4081 cgccctattg tcttgccaaa aggttttgaa atagagatta tggcaaagga ttgcatgctt
     4141 tgcattgatg ggcaagaaaa ttataaaatg aatgatttta aaagtataaa agtgggttta
     4201 agtgataaaa atgtggcttt aattcaccca aaaaataggg attattttca aattttaaaa
     4261 gaaaaattac actggggaaa ttgatgataa atagaatttt tatgaaagaa aatcttggtt
     4321 ttaaaaaggc tgagcttgaa atttctaaag ggcttaccgt ttttacaggc ctaagtggag
     4381 ctggaaaatc ggtcttgttt aaaggaattt tatccgcatt ttctttgagt gaaagtgagg
     4441 ctaaaattgt cgaaatagaa gtagatgata agttggattt agaaagtttt ggtatagaaa
     4501 gtgaagagga gaatgttttt aagcttttaa aagaaaaaaa cacaaaatat tttattaaca
     4561 atcaaagcat agcgaaaaaa agtttgcaaa atttaagtaa aacttttatt aagtatttaa
     4621 gcgcaaagga aaataacgaa tttggaaatg aaaaattttt aaatctctta gatgccttgg
     4681 agatgcaaga aaatacaaat tttg
//
LOCUS       DARGEM010000115         4698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.115, whole genome shotgun sequence.
ACCESSION   DARGEM010000115 DARGEM010000000
VERSION     DARGEM010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.115"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            80..1762
                     /locus_tag="SFZ78_001516"
     CDS             80..1762
                     /locus_tag="SFZ78_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG8212359.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            1886..2626
                     /locus_tag="SFZ78_001517"
     CDS             1886..2626
                     /locus_tag="SFZ78_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8212360.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVSSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            2623..4062
                     /locus_tag="SFZ78_001518"
     CDS             2623..4062
                     /locus_tag="SFZ78_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG8212361.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            4055..>4698
                     /locus_tag="SFZ78_001519"
     CDS             4055..>4698
                     /locus_tag="SFZ78_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG8212362.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAH"
BASE COUNT         1606 a          719 c          855 g         1518 t
ORIGIN      
        1 cttactctat aattctttta ttttaattta attttttgtt acaataaatt tatacataat
       61 aattatcaag gaggaaaaat tggaacaaat tttaacatgg caacaaattt atgacccttt
      121 ttcaaacatt tggctaagtg ctttagtggc atttttacct atactatgtt ttttagtttg
      181 tttggttgtt ttaaaactta aaggctatca agcaggtttt ttaactgtta tacttgctac
      241 tttagtagct ttatttgcct ataaaatgcc ttggaattta gtgggtgcaa gttttattca
      301 aggctttaca aatggtatgt ggcctatagc ttggattatc atcgcggcaa tctttcttta
      361 caaactttct atcaagtcag gttcttttga aatcattaaa aaaagcgtga tgagcattac
      421 tccagatcat agaattcaag tgattttaat aggtttttgt tttggttcat ttttagaggg
      481 tgctataggt tttggtggcc ctgtggctat aaccgctgca cttttagtag gacttggctt
      541 gcgtccttta caagctgcag ggctttgtct tatcgcaaat accgctcctg ttgcttttgg
      601 tgcggtggga attcctatta ttgctatggc aaatcttgtc ggcatagaac agcattcagt
      661 ttctgccatg gtaggtagaa tgctagttcc tttaagcctt actatacctt ttttcatagt
      721 ttttttaatg gatggattta aaggtattaa agaaactttt ccagctattt tagttgcggc
      781 gctaagtttt acaactactc aatttttaag ctcaaatcac ctaggagcgg aattacctga
      841 tattatttca gctgtggttt ctttagcagt tacgactgta tttttgaaat tttggaaacc
      901 aaaaaatatt tttagatttg acaatgaaag caatttcact caagataaca ccttaagttt
      961 taatcaaatt ttaaaagctt ggtcaccttt tattttactc attgtttgta ttatcatttg
     1021 gacacaacct tggtttaaag ctctctttga taaggacgga attttaagct atacaagtat
     1081 tactttacaa tttagcaata tcacaactgg aattttaagc ccttctatca caggcatagg
     1141 agaagctaag cctttatctt tggccttggg tgtagattta atcaatggaa aaaccgtagc
     1201 tcaagcagga acagcgattt tacttgccgc ttttctaact atagctattt taaaaatcaa
     1261 agccgaagat gctgcagaat gcttttgggt taccttaaaa gaaatggcta taccttgtat
     1321 caccataggt ttggttgtgg cctttgcttt tatctctaaa aatagtggta tgagcactac
     1381 tttaggactt gcttttgcac acacaggtga tgctttttct ttcttttcac caatcattgg
     1441 ctggataggg gtatttttaa caggctctga tacaagtgct aatttacttt ttggaacctt
     1501 gcaacaagta agcgctcaaa aactaggtat tagcgaagct ttatttttag cagctaattc
     1561 agtaggtggg gttgttggaa agatgatcag tccacaaagc attgctatag cttgtgcagc
     1621 ggttggactt gtgggaaaag aatctgatct tttcaaattc acattaaaat attctgtagc
     1681 ttttattatt ttaataggaa tttggacttg cattatagct tttttcttac aaggaatcat
     1741 ccctgaagtt atagtgaaat aattaaaaaa aattaagttt tatttcaaca aatattcgtt
     1801 tttagaatat ttgttagaaa ttttactttg cttttatttt tacaggatta gaatatttat
     1861 cctaaattat cctaaaagga gaaaaatgat gaaaaaagtg tatttttacg ccacatgctt
     1921 aggaagtgct gctatgcaac aaagcgtttt aaatgcgata aaacttttaa ggcgtgaggg
     1981 tattgaagtg attttcaaaa aaaatcaaac ctgttgcgcc caaccttctt ttaactcagg
     2041 ttatttcgat gaaagtcgtg agatcgcttt atataatgta gatttatttg ataaagatta
     2101 tcccatcgtt gtatccagtg gttcttgtgc gggtatgatg agtcatgact ataaagagct
     2161 ttttaaaaac agacctgaat tttccaaaat aaaaactttt agctctagag tgatagaact
     2221 ttcacaatac cttgatgaag ttttaaaagt agattatgaa gataaaggtg cacctataaa
     2281 agtaacttgg cattctaatt gccatgcttt aagagtgcaa aaaagcatac aagcgagtaa
     2341 aaatcttatc aaaaaactaa aaaacgtaga attagtagaa cttcaatacg aagaagaatg
     2401 ctgtggtttt ggaggaacct tttcagtaaa agagcctgaa atttcaaatg ctatggtaag
     2461 aagcaaaatc aaagatatac aaaatagcgg tgcaaaatat ctcatcagtg gtgatggagg
     2521 ttgtctttta aatatagatg gcacaatgaa aagaatgggt ttggatataa aaggcataca
     2581 tttatatgac tttttactta aacgcttaga aggagagaga ctatgagtca aaaaattcct
     2641 cacgaacaaa tcgttcaaat taaactcaat gacaaacaaa tgcaagaaaa tttaatgact
     2701 gccatgcata ctttgcaaaa aaatagactc aatgttattg atgctagatt taaagactgg
     2761 cagggcttaa gagctaaagc taagcaagct aaaaataatg ccttaatgag cttagaagaa
     2821 aggcttttag aatttgaaaa aaatgctaca aaaaatggca ttaaggtgca ttgggcaagt
     2881 agtgatgaag atgcctgtga aatcgtctat gaaatcatga aagaaaaaaa tatcaccaag
     2941 cttttaaaag gcaagtctat ggcaagtgaa gaaataggcc taaatcacta cctagaaaaa
     3001 aaaggtttaa aagctataga aaccgatctt ggagagctta ttttacagct taatgaagaa
     3061 ccccctttac acatagttgt acctgccata catagaaacc gccatgaaat cggagaaatt
     3121 ttcaaagaaa aattaggagc aaatttagaa aacgatgaac ccgaaagttt aaatgcggtg
     3181 gctagagaac atttaagaaa agattttgaa ggcttaaaac ttggacttag tggggtcaat
     3241 tttgccatgt caagagaagg agctttttgg cttatagaaa atgaaggaaa tggtagaatg
     3301 tgcactacag cacctgatat tcatatcgca ctttgtggta tagaaaaagt catggaaagc
     3361 tttgaagatg cggctactat ggtttcttta cttactcctt cagccacagg acaatttata
     3421 ccaacttata acaatatcat tacaggccct agaaaaaatg gagatttaga tggtcctaaa
     3481 gaagtacatg tgattttatt tgatcacaat cgctctaaaa tgttagctca tgaggattat
     3541 tatgaggctt tgcgttgtat tcgatgcggg gcttgtatga atttttgccc tgtttatgat
     3601 caaatcggcg gacatgctta tcaaaccact tatccaggac ctataggaga agtaatcagt
     3661 cctaatattt ttggtataga tcatacagga gatattttga atttctgttc actttgtggg
     3721 cgttgttctg aagtttgtcc agtccaaatt cctttggctg atcttattcg caaattaaga
     3781 tgtgataaaa taggacaagg taaaaatcca cctttaggag caaataatgt tcatcacaat
     3841 gccctagaag cctttgcttt taaacaattt aaaaatatcg caaccaatgg cgataaatgg
     3901 cgtttttcac tttcaaaagc acattatttc aactggacgg tacaaaattt cgcaagcatt
     3961 ttgcctgtga ttaaaaaatg gtacgctttt aaagaattac ctcaaattaa aatggatctt
     4021 tataaagaag tgcaaaaact agaaggagta agctatgagt aaaatcgatg aaatttcaag
     4081 caaaagcaaa gcaaatattt tagaacatct taaaaaagct tacaaagaaa caactttcac
     4141 acgcattgaa agtatagatc ctgtagaaca tatccagaca acccaagata tgcttacaga
     4201 aatgaagcaa aaaatgagcg ataacaaata catcgttgaa aatgctacaa aagatacctt
     4261 agaagaaaaa atcaatgaaa ttgtcgcaaa atatggcttt aaaagtatga tttatggagc
     4321 ggatttaaat ttaaatttag aacaaatcaa agcagaaaaa aagatttgct ttgataaaga
     4381 aatcgaaaat ttaagatctg aagtttttca tagtgatttt tccatcattc acgcaagagc
     4441 aggggtaagc tctcacggag ttgcacttat accttcaagt aaaacccaac ctagaatgct
     4501 aagccttgca cctaaacttt gcatagtatt gcttaaaaaa gaaaatgttg ttaaaagtct
     4561 tagcgaagct ttaaatttag taaaaaaaga aaatgaaatt ttacctacta atatcttatt
     4621 tatagcaggg ccttcaagaa cagcagatat agaacttatc actgtttttg gtgttcatgg
     4681 gccacaaatt gcacatat
//
LOCUS       DARGEM010000116         4687 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.116, whole genome shotgun sequence.
ACCESSION   DARGEM010000116 DARGEM010000000
VERSION     DARGEM010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.116"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            13..1023
                     /locus_tag="SFZ78_001520"
     CDS             13..1023
                     /locus_tag="SFZ78_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011139327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8212363.1"
                     /translation="MLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEILKQNG
                     VKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKWTANPH
                     HLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSLPEYVS
                     EFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLKLFIDK
                     GCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAPYFHNG
                     AIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTEKTPKP
                     EL"
     gene            1117..2454
                     /locus_tag="SFZ78_001521"
     CDS             1117..2454
                     /locus_tag="SFZ78_001521"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8212364.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            2447..2917
                     /locus_tag="SFZ78_001522"
     CDS             2447..2917
                     /locus_tag="SFZ78_001522"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG8212365.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            2901..3353
                     /gene="hemJ"
                     /locus_tag="SFZ78_001523"
     CDS             2901..3353
                     /gene="hemJ"
                     /locus_tag="SFZ78_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG8212366.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(3350..>4687)
                     /locus_tag="SFZ78_001524"
     CDS             complement(3350..>4687)
                     /locus_tag="SFZ78_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8212367.1"
                     /translation="FQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYMLYA
                     HVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTTLID
                     EEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDETLKK
                     VARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAPQQI
                     TTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNKLND
                     EYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKEIIK
                     YVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFGQYL
                     FVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
BASE COUNT         1553 a          610 c          832 g         1692 t
ORIGIN      
        1 aaagtaaaat cattgctaat cgcatcctta gttgcttttt caagcttaaa tgctgcaagt
       61 cttatagatg aagctaaaaa ttcaggtctt gttgccttac caaaagatca aaaaggcgtt
      121 gatgaaattt taaaacaaaa tggagtaaag gctagtgaat ttactcttga aaaagcagag
      181 cttggcaaaa agctctattt tgaaccacgt ctttcaaaaa gtggtatcat ttcttgtaat
      241 acctgtcata atgtaggact tggtggaaca gatggaatca gtactgcaat aggtcataaa
      301 tggacagcaa atcctcatca tttaaattca ccaacagttt ataatgcagt tttaaataat
      361 actcaatttt gggatggtcg tgcaggaaca ttagccgatc aagctaaagg tccaatccaa
      421 gctgatcctg aaatggcaac tcctgctaaa cttgcagtag aaaaaatttc atctttgcct
      481 gaatatgtga gtgagtttaa aaaaatctat ggtaaaagcg gtgtaaattt tgacaatatt
      541 gctgatgcaa ttgcaaattt tgaaagaact ttgatcactc catctcgttt tgataaattt
      601 ttagaaggcg atgaaaaagc tttaacaaaa gaagaacaaa aaggcttaaa gctttttata
      661 gataaaggtt gtgtagcttg tcataatggt gtgaatttag gtggcaatat gcaagcgttt
      721 gaagttgctg gtaaatataa atttgcaaat ttaggtgatt ttaaaggtga tgcaaatggc
      781 atggtaaaaa ctccaacttt aagaaatgtt gctgaaactg ctccatattt tcataatggt
      841 gcgatttgga atttaaaaga tgctattaag gaaatgggta gtgtgcaact tggcattaaa
      901 atttctgata aagaagcaaa aagtattgaa actttcttaa aatctttaac aggaacaaaa
      961 ccagcaattg tttatccaca acttcctatt tctactgaaa aaactcctaa acctgaacta
     1021 taaggttcca aacaagctct aattttagag cttgtttaaa tttctttatc ttagctttgt
     1081 tataattgtc tttaaatttt gctagaaagg tttgcaatga aactttttgg aactgatgga
     1141 gttcgtggaa aagcgggtga atttttagat agttttttgg ctatgcgttt agcaatggct
     1201 gcgggtattt attttaaaga taaaagtatt actaataata tcttagtagg aaaagataca
     1261 agaagaagcg gctatatgat agaaaatgct attgtttcag ggcttacttc tataggatat
     1321 aatgttatac aaattggtcc tatgccaact cctgcgattg cattcttaac tgaagatatg
     1381 cgttgtgatg cagggattat gatttcagct tctcacaatc cttattatga taatggtatt
     1441 aaattttttg atgctcatgg aaacaaactc agtgaagata tagagaaaaa aatagaagaa
     1501 atttattttg atgataagct tatacaagcc tctaaggtag atatggagaa aattggtcaa
     1561 gcgaaaagaa ttgatgatgt tataggaagg tatattgttt ctattaaaaa ttcttttcca
     1621 aaagatctta ctttaaagtc tttgcgtgtg gttttagatg tggctcatgg ggcagcttat
     1681 aaggtagcac ctactgtttt taaggaatta ggtgctgaag ttatagtaat gagcgataaa
     1741 cctaatggac ttaatatcaa tgaaaattgt ggagctttac atcctgcaaa tttagctgct
     1801 gaggtaaagc gtttgcgtgc agatgtgggc tttgcttttg atggtgatgc agatcgtttg
     1861 gtggttgtag atgaaaaagg cgaagtggct aatggagata gtttattagg ggttttagca
     1921 ctttatctta aagaacaagg taaattacaa tcaagtgttg tagccactat aatgagtaat
     1981 ggtgctttaa aagaattttt aaataaacat ggtatagaac ttgatacttg taatgtgggc
     2041 gataaatatg tgcttgaaaa attaaaagcc aatggtggaa attttggtgg agagcaaagt
     2101 gggcatatta tttttagtga ttatgcaaaa actggagatg gtttgatagc tgctttgcaa
     2161 tttagtgctt taatgctttc taagaaaaaa tctgcaagct ctattttggg tcaagtcaaa
     2221 ccttatcctc agcttttaac caatcttaaa attgcagaaa aaaaagattt agataaaatt
     2281 aaaggtttaa aagaattaaa aaaagattta gaaaataaaa atattaatac cttatttcgc
     2341 tattctggaa cagaaaattt gataagactt ttactagaag ccagagatat taagctctta
     2401 gaaaaagaaa tgaaaaatgt tgtggagttt tttaagaaag ctttaaatgg ctaaaacttt
     2461 taaatttatt ttttattttt ggggtgcctt tgttttggtt tttgcccttg atcaatgggt
     2521 aaaatcctta actttagcag gatttagatg gcagagtgaa tacctagatt taacttatgc
     2581 tctaaataca ggcgtagctt tttcaatgtt gagtttttta gaacataatt taaaatattt
     2641 acatcttgct ttaattggcg tgctttttat ttatcttttt tggcaaagaa cacttttaaa
     2701 aactcatagc atagcttttg gaatgatgct tggtgccggc gtttcaaatt tattggatcg
     2761 ttttatacat ggaggtgtag tggatatgtt tttttggcat aaatggttta attttgctat
     2821 ttttaatgtt gcagatgtca tgataaatat aagtgtggct ttgattttaa tacaagaaat
     2881 atttaaaaaa aggaaaaaag atgacagaat ggattaatga ttattatttt tggattaaat
     2941 gggtgcatta tttggcattt gtttcttgga tggcgggtct tttttattta cctcgtcttt
     3001 ttgtgtatca tgctgaacat aaagacaata aaggttttgt cgaggttgta aaaattcaag
     3061 aaagaaagct ttattattat atacaaactc ctgccatgat tgtgacttta atcacaggaa
     3121 gtttaatgtt gcatgctcat aaggaagttt taatggtagg tgcgggtttt atgcatgtta
     3181 aacttacctg tgttacactt ttgattattt ttcatataca taattattat tgtttaaaag
     3241 ctttagcaaa tgatacttct actaaaagtg gaaaatattt tagaatttat aatgaatttc
     3301 caactataat gtttattatc atcgctttaa tgatggttgt tcgtcccttt tagtttgtct
     3361 ccgctttaaa ttccatacta gcggagttaa gcggatcaat attttctttc atgatatcga
     3421 tataatcttt atttttaaga cgcttatcat ctctaaatac tgcgcgcaca agatccattc
     3481 ctgtgtaaaa atctttcatt aaaaccacaa aaagatattg accaaattca gttgcgatta
     3541 aagcattttg atcttttatg atggcaccac ttgttttaag tcctaaaagt tctatgaaaa
     3601 gttctttttc gagattgcaa tttagagttt tattaaattt atcaatttct attttccctg
     3661 aaaaaatttc agttaaaaag acatatttga taatttcttt tttatcaaaa caagctttgg
     3721 ctatattagc attttgtttt tcttgtataa atttagcata atcatttaga ttaaatgcat
     3781 tgattaaaag ctccccatct aaaaagctaa aagctccgct gcctactcct aggtattcat
     3841 gatgagaact gacatattcg tcattaagct tgtttttttc taaagaaaaa ctccaaccat
     3901 tgttttgggt atagtcttta aaaaattctc gtatgatttg ataataagta aattcattat
     3961 ctttaatgct cactcctaga cttttagcga tattatcttt ggtaagattt gatttcatta
     4021 aaggataggt tgtgatttgt tgcggggcta aatttttagc aatttctaag tcatttaaaa
     4081 gttgtttttc gttttgtcct ggaagattga aaataagatc tatactaaaa ataggtaaaa
     4141 ttcctaaagc ttttgaaatt ttttcttgaa gttctttaga tgaaccaaat ttattatatc
     4201 ttgccacttt tttcaaagtt tcatcatcaa aactttgaat cccgcaactt aaacgatcaa
     4261 ttataccttt aaacatagaa agcttatttg gatcaatatg atttggatcg ctttcgcatg
     4321 aaatttcttt tatattaaat aactttttac aaagttctaa ggtttttaat aattcctctt
     4381 catcaatcag tgttgtacca ccacccacat acatggaggt aaaatcaaaa cctttatttt
     4441 tcatgatttt aatttcttct ctaagatttt gaaaatatac tttggctaaa ttttcatcat
     4501 aataatattt atgaaagcta caataaggac aaaaagtatg gcaaaaaggt acatgggcat
     4561 aaagcatata gcttttgtct tgttttggaa ttttttcttc gggttgtttt aaaagttcga
     4621 cattgaaacc tttttggagg gatttttcca tcatagtatg agagtatttt aaagctaaat
     4681 tttgaaa
//
LOCUS       DARGEM010000117         4581 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.117, whole genome shotgun sequence.
ACCESSION   DARGEM010000117 DARGEM010000000
VERSION     DARGEM010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.117"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..713
                     /locus_tag="SFZ78_001525"
     CDS             <1..713
                     /locus_tag="SFZ78_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212368.1"
                     /translation="QFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRKI
                     KHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFNY
                     ANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNVI
                     LHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLGI
                     SRKSLWEKRKKYEISKKK"
     gene            691..1851
                     /locus_tag="SFZ78_001526"
     CDS             691..1851
                     /locus_tag="SFZ78_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8212369.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1856..2356
                     /locus_tag="SFZ78_001527"
     CDS             1856..2356
                     /locus_tag="SFZ78_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG8212370.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            2435..2698
                     /gene="rpsT"
                     /locus_tag="SFZ78_001528"
     CDS             2435..2698
                     /gene="rpsT"
                     /locus_tag="SFZ78_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG8212371.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2717..3784
                     /gene="prfA"
                     /locus_tag="SFZ78_001529"
     CDS             2717..3784
                     /gene="prfA"
                     /locus_tag="SFZ78_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG8212372.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3798..4541)
                     /locus_tag="SFZ78_001530"
     CDS             complement(3798..4541)
                     /locus_tag="SFZ78_001530"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG8212373.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNVNGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKANPNNIEIMFLEDESKAAS
                     VILRKRLRYRVDASFLERDERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNRHKH"
BASE COUNT         1703 a          685 c          682 g         1511 t
ORIGIN      
        1 gtcagtttaa acatagtatt attattttgc ttatttctta tataagtaca gatacagttt
       61 caaatccttt gaaattaggt gctagtgatt atattcaaaa accctttatg atagaagagc
      121 tgattagaaa aataaagcat tatcaggatt ttagaaaact ttcaatcctt aataaagctt
      181 atcaaagcta tatcaaatca agattagaaa caatcaaaat tccagagtat aattataaaa
      241 aattaaaact tccattgata ttaaaatcca acaagcaaag cagtgctgat gcttttgttt
      301 ttaattatgc aaatgaatgt gacattactc tttcttttat tgatttaaca tctacaaatt
      361 cagttgaaaa agttatgaaa cttcccacag aaaacaatct cttatttttg agtaattttc
      421 aagcattaaa agcaacagaa aaggaaaaac tcctagattt tatacaaaac aaaaatgtta
      481 ttttgcatac caattcaaat acagatgatt taaaaataaa ctgcattaat ttaaatgata
      541 atgaaaaaaa tatcaatagc aatgaaattt taactataga tgagtatgta aaatatgtta
      601 ttataaatta ccaaaatata tttcctgata ctgatctttc aaaaaaatta ggcatttcac
      661 gtaaatcttt atgggaaaaa aggaagaaat atgaaatcag caagaaaaaa taaaaacatt
      721 accatagatc aaaatgaatt tggcatcttg tcacttatta aagaaggttt gctaggtact
      781 tgcactcatt taatgaatga aaaagaagtc aatgaaatca ttaaatcagg aaaatttaaa
      841 ggagaaagtt ttccctatcc cttaagcttt gcaccaaaaa atgctgaaga agcactaaat
      901 gatataaaat ctggcgatag aatcgatctc atactagatg aaaaagtagt aggacatata
      961 gattttaaaa gccaatttaa aaataataaa aatttttctg atattttcag tcctaacact
     1021 tgctctttag aagacatggg aacaacttgc ataagtggaa aaatagaaat ttataattct
     1081 caaattgaaa aaataaaaga aaattttcaa caaatcaaaa acaatcttaa tgcacaaaaa
     1141 attactgcta tagtttcaag ttttgatcct ttgcatcgtg cccatgaaag aatgtttcgt
     1201 tggactattg ataaagcaga tttagttgta atttttcttg tagaatcttt tgatgtaaat
     1261 gggtttgaat tcgaacttaa agaagcatat ttgaaaaaat ttattcaaaa ctatcttcca
     1321 ccggatagaa ttttcatttt tccattaaaa aatattaata tttttcacgc tcatttaaat
     1381 cctggcttag aaagtattat cgcaaaaagt ctaggttgta ccaaactagt agtaggacaa
     1441 aatcatacag gacttggaat gttttatgac gataaccaac caaaaaccat acttgatgat
     1501 ttttccaagg actatggcat agaagtgatc gttttgcctg aatttgtatt ttgcgatcaa
     1561 tgtcgcatga ttgttagcac aagatcttgc cctcatggtt gtcatcacca tttgcactat
     1621 aattctcagt ctttaaaaga tttactaaga gcgggtatca ttcctccagc aattttcatg
     1681 cgcaaggaag tatctagtgt tattttaact tctctttttc caaatagatt aaaaaatatg
     1741 caaaaaattt ataatgagct ttttccaact gatggaattt tagaatacaa aaatgatgaa
     1801 gaattttatc aaaaactttt agaaattcat caaatgtctt atatggtgta ataaaatgca
     1861 aaaattattt ttaacttttt tttattcagg ttctgtaaaa aaggcaagtg ggacttttgg
     1921 tactatcgct gctttaatac ctgctttttt tatacttaaa tatctcggga ttaatacttt
     1981 gtttttacta agcattttaa tttttgttgc aagtattcgt gttatagatg attatgaaaa
     2041 aaaaacagga attcacgatg acaaacacat agttatcgat gaggttgctg gagtttttct
     2101 tgcttgtgct attgcagcaa gtgttgaaaa ctcgatagtc aattttattt tggcttttgt
     2161 tttattcaga ctctttgaca ttacaaaacc ttctattatt ggtaagatag ataaaaaagt
     2221 caaaggcgga ctaggtgtaa tgcttgatga tatgttagca ggattgtttg ctggactttt
     2281 aagtgcggta atttatggat ttttacttaa atttaattta gttttttggg atataaattt
     2341 aaaagactta ttttgaaatt ttgcttaaat taattaaatt ttaaatttta ttcttatata
     2401 atttagtctt taatttcaaa aaaggaaaat ataaatggca aaccataaat ctgctgaaaa
     2461 aagagcaaga caaactatta aaaaaacaga aagaaataga ttctatagaa caagacttaa
     2521 aaatataact aaagccgtaa gagaagctgc agcaaatgga gataaaaatg ctgctaatga
     2581 agctttaaaa gtagctaata aaagcattca tgctatggta agtcgcggtt tcattaaaaa
     2641 acaaactgct tctcgccgtg taagccgctt agccctttta gtaaataaaa tcgcataatt
     2701 ttctatatag tttttaatgt tagctagcaa actagatcct tttttaaaac gctttgaaga
     2761 gttaaattct cttcttagca gttctgatat aatcaacgat atcagtaaaa tgactacact
     2821 ctctaaagaa caaaaaaatt tagaacctat cgttttaaaa gctaaagagt atttaaaaac
     2881 tttagacaat atagaagaaa ataaagcttt gctaaacgat ccagaacttg gggaacttgc
     2941 gaaagaagaa ctaaaaactt tagaagaatt aaaaccaaag cttgaagaag agattaaaat
     3001 tttacttctt cctaaggatc ccaatgatga aagaaatatt tttcttgaaa ttcgtgcagg
     3061 cgcaggtggc gatgaggcat ctttatttgt aggagatctt gtaaaagctt atgcaagata
     3121 tgctgaaaat cgtggctata aacttgagat tgtaagttct agtgaaggaa gtgtaggtgg
     3181 atttaaagaa atcatcatgc ttgttaaagg aacaggagct tattcaagac ttaaatatga
     3241 aggtggaacg caccgtgttc aaagagttcc tcaaacagaa tcccaaggac gcgtgcatac
     3301 ttctgctatc accgtggcag taatgccaga agttgatgat atagaaatcg aaatcaatcc
     3361 aaacgatctt aaagttgatg ttatgcgatc ttcaggacat ggtggacaaa gtgtaaatac
     3421 tactgattca gctgttcgta tcactcatat ccctacaggt atagttgtag tcaatcaaga
     3481 tggaaaaagc caacacaaaa ataaagaaag tgcgatgaaa gtcctaaaag caaggcttta
     3541 tgaaatgcaa gagagtgaaa gactagcaaa agaaagtgaa gcaagaaaat cacaagtagg
     3601 aagcggagat agaagcgaac gcattcgcac ttacaatttt ccacaaaatc gtatcagcga
     3661 tcatagaata aatcttactt tatatcgctt agatgccatt atgcaagatg ggctttttga
     3721 tgaaatcata gaacctttaa tcactcatca tcaagcccaa gctttacaag aacaaaattt
     3781 ataagacttt atataaatta atgcttatgt cgatttccac tagcacctac atgtgcgaca
     3841 tttccatttt ctatatcata agcttgacca aaacctttta caaagcgtcc ttttttaaat
     3901 tcaagcttta ctagatgaaa atcaagcatc ttgcgtatag ttttaatgcc tccttctcct
     3961 ccggtttgtt tctcaaactc atcataaatt tgatcaaatc tttcatctct ctctaaaaaa
     4021 cttgcatcta ctctatagcg caatcttttg cgaagtataa cagaagcggc tttactctca
     4081 tcctctaaaa acattatttc tatattgttt ggatttgctt tgatgttgtt aaaatgttcg
     4141 cttacttcac ttatataaat ataatttccc cattgtgtgc ttacaaaagg tgcatacgag
     4201 caaacaactt ctccatttac atttaaagtt gccaaagcta cagaattaaa acttagcata
     4261 aattcattta attctttttc tactccacta aaattttgct cactctttgc actcatgcaa
     4321 agggatatta tagtatcttt aatcgtgttt tcatcggctt ttttaggaaa ttccactcgt
     4381 aaattttctt tatcattgta aacaagatcc aagccattaa aatcaacact ttttagaaaa
     4441 acatcttgta cttgctcaat accaccaaat tttttacaaa gatcaactaa atttgattta
     4501 tgatgatcat tcatatgaga aataatgctt tcaaaattca tttttatcct ttcttgattt
     4561 taaaataaaa tattaaaaaa a
//
LOCUS       DARGEM010000118         4554 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.118, whole genome shotgun sequence.
ACCESSION   DARGEM010000118 DARGEM010000000
VERSION     DARGEM010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4554
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.118"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1068)
                     /locus_tag="SFZ78_001531"
     CDS             complement(<1..1068)
                     /locus_tag="SFZ78_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212374.1"
                     /translation="MLINQTFEINSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGYGANANIHFLDSYRNYIAKKFDVATINVFYHCFCQRPSDVEKYSTLADFTKEDLRL
                     MEKVLCKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFESKDTNGDMYIQGNHFFVSCFLKTHWTRKENSPYFFNN
                     ENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKELTMQILKILGYDVSL
                     NLIDENKIDGKFIKNLDHGCGI"
     gene            1129..2637
                     /locus_tag="SFZ78_001532"
     CDS             1129..2637
                     /locus_tag="SFZ78_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8212375.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFDIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNTLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRVDNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            2677..2904
                     /locus_tag="SFZ78_001533"
     CDS             2677..2904
                     /locus_tag="SFZ78_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8212376.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLEIAMKD"
     gene            complement(2901..3971)
                     /locus_tag="SFZ78_001534"
     CDS             complement(2901..3971)
                     /locus_tag="SFZ78_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8212377.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(3993..4535)
                     /locus_tag="SFZ78_001535"
     CDS             complement(3993..4535)
                     /locus_tag="SFZ78_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212378.1"
                     /translation="MPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYF
                     GDENYLIRAVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDA
                     TLHLIKDENDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPC
                     GNKVFVFKDLEDKFELEMIN"
BASE COUNT         1626 a          732 c          573 g         1623 t
ORIGIN      
        1 tataccacaa ccatgatcta aatttttaat aaattttcca tcaattttat tttcatctat
       61 caaatttaag cttacatcgt aacctaaaat ttttaatatt tgcatggtta gttctttaaa
      121 atttgctgga gttaaaggat cttctttact atgataactc acataaataa tatttttatt
      181 tttttgactt tgcaaaatca aatgatcctt atttaacaat gttctaataa aataattttc
      241 attattaaaa aaataaggtg aattttcttt acgcgtccag tgggttttta gaaaacaact
      301 cacaaaaaaa tgattgccct gtatatacat atctccatta gtatctttac tttcaaattc
      361 caactctcta ccaataatat aattaagcgg tggaacagcc gaacccgaat tatcaatcac
      421 gccatcaaca taccaagggg ctattttagc tataagcaag gctaagtatc ctccataaga
      481 ccccccccca taaatttttg gtaaatctgc aaattttgga aagcgtttaa ccaaatcttt
      541 taaagcattg atatgatcaa tagctgccat aatgccaaaa ttttgatatt ctccacgcga
      601 aggaataaaa gttgcactta gtctttcttc aaaatcataa ggcaatcgat ttaacatttt
      661 taattctgtc ataatctcac ttaaatattc acaatgactg accacagtat tgttggccaa
      721 ttgatcgcat gggatattgt atttacaaag tactttttcc ataagtctta aatcttcttt
      781 tgtaaaatct gctagcgttg aatatttctc cacatccgag ggtctttgac aaaaacaatg
      841 ataaaaaaca tttatcgttg ccacatcaaa tttcttagct atgtaatttc tataagaatc
      901 taaaaaatgt atattagcat tagccccata acctcctatg ataaaaacta tagctttcat
      961 ttctttttca tcatcataac tgatgcggta ttcaagtttt gaagttcttt ttatatttaa
     1021 ttctacatca tcacaagaat tgatttcaaa ggtttgattt atgagcatat aaaggccttt
     1081 tttattaatt tatagatatt atattacaaa aaattaaaaa ggtaaatcat gacaactcac
     1141 atctatgatt ttttagaaaa aagtttaatc aaatttagcg aaaaaactgc ttttgtagaa
     1201 ccctttgcca aggaaagaaa agaaatcact tataaagact ttgatctttt ttctaaaaaa
     1261 ctagccagtg aaattttaaa aactttaaaa aatgataatc ctactcaagt tcctgtttta
     1321 atcatcttgc ctaaagggat tgattgtttg atttcatttt ttggagtggc actcagtgga
     1381 aatttttata cccttttaga tgaaaaaagt cctaaagaaa gagtagaaaa agtcatagag
     1441 gttttaaagc ctaaactttt tatcacttca aaggacttaa attttaactt agatttacct
     1501 acgctttata cacaagactt tgaaagtttt gatatagatg agagtttaat aaagcatgcc
     1561 aaagaaaaac atatagatac taatttactc tatgttttct ttacaagtgg gagcacaggt
     1621 attcctaaag gagtaagcat agcacataag agtgtgattg attatacttt ttgggtgtgt
     1681 gagactttta aatttgatga gaatgaaatt ttagccaatc aagcaccatt ttattttgac
     1741 aatagcattt tagatatttt ttcaagtgta aaatcaggag cgactttaca ccttttacct
     1801 aatcatcttt ttgcctttcc aaataaaatt ttagaatgcc ttgaaaaaga aaaagtaagc
     1861 actatatttt gggtgccttc ggtgctaatt tattttgcaa atacggaagc tttgaataat
     1921 tttagtttaa ataccttaaa aaaaatactt ttttgcggtg aaatcatgcc caataaacag
     1981 ctaaatattt ggcgtaaaca cttacccaat gccttatttg ccaaccttta tggcccaaca
     2041 gaaatcactg atgtatgttc tttttatatc atcaatcgca cttttaaaga tgaagaactt
     2101 ttacctatag gaaaagcgtg caaaaacaca gaacttttag tttttgatga aaatatgaat
     2161 ttcataagtc ctaaacaaat aggtgttaaa ggggagcttt tcgtacgtgg aacttctttg
     2221 tctttagggt attataatga caaagaaaaa accaaacaag cttttattca aaatccttta
     2281 catgataatt atttagattt actctataaa acaggagata tcgtttctta taatgaattt
     2341 ggagagcttt tgtgctatgg gagagtggat aatcagataa aatatatggg gcataggata
     2401 gaacttggag aaatagaaag cgtgataaat tcccatgcga atattaaaaa cagtgcatgt
     2461 atttttaaag aagatattat ttgtttttat gaaagtgaag aagaaattaa ttttaaagct
     2521 tttttaaaag ataaattacc ttcttatatg atcccaaaaa attttattaa actcgacaaa
     2581 tttaagctta atcaaaatgg aaaaatcgat agaaaggttt taaaagaact tgtttaaata
     2641 aatattttat aatttcaaaa aactaaagga gaaaaaatgc aagaaatcaa acaatttttt
     2701 atcaatatag aaagaacaga tatcaatgag agtatggaaa atctagtaag tgaagatttt
     2761 atcgatagta tcgatatcat ggctttggtt gccgaaatag aaaaatttta taaaaaaccc
     2821 ttaaaagcag aatttatcac acctgaaaat tttgaaagct ttgaaaatat caaaaaaatg
     2881 cttgaaattg caatgaaaga ctaatctttc cttgcaagtt caagctgttc ttttaaagaa
     2941 ctgatgattt catttttaga aacaataatt tgcgctataa aatccgccac atcatcccaa
     3001 tctttactta gcatatgggt taaagtataa ttttgttcat attcttccca attcacagga
     3061 gtaaaaagag aatttttatg cgggaaatat ttgtttttta cccattcaag tgaagaagca
     3121 aaataatcca cataagcttt agcaatatct ttttgcactg caaattttaa tcttttttct
     3181 ttgctgcctt caaattttct tcttgccata aaaagcaaag aattaagatt atcctgcttt
     3241 aaatcttttt gatttaatct tgacataagc tccattccta aaagattaaa actttcattt
     3301 ttggtttgtt ttaaaacaaa actctcatcc cattcaagtc ctaaatgata aacaaaatcc
     3361 ttaagtaaag tccctcctac ataatcctcc cttagaagtc ttactatcaa attttcttct
     3421 ccaaatacct cagcatgagt tttgcaaatc cattcatagt caaaaatata ttttctagga
     3481 tgatcttgcg gagcaaaatc agcagaataa taccccatat tgtttttatg atcttgagaa
     3541 caatgtgagt ttaaataacc caaagtatct ctaaaataca caataatata aatttgagta
     3601 aaacctaact ctctcataat cttttctaaa atttctacat gttttttggt agaaaaatcc
     3661 caaactatac cctcagctga aaaaataaat tttttatctt tatgtaaagc actttcactt
     3721 ttaaaatttt ctatagctct aagaagtctt tcatttgtga tatgacttaa aacactctct
     3781 ttttttaaaa tatcttcttt ttgaaccaat tctaaaacca tatccaccaa agcccaatgc
     3841 ctatttgcca ctctaagact ttttgggtaa atataagctt tttgcaaaag cttttcttcg
     3901 ttttgcatca agaagccttg tttttcttga tttcctgtat tagtagttcc tatatgtaaa
     3961 tatgctgtca ttttatatcc tttatcttta ttttaattta tcatctctaa ctcaaattta
     4021 tcttctaaat ccttaaacac aaatacttta ttcccacaag gataagagat agaattttct
     4081 tgcataaaag attttcttcc ttgtagtttt tcaagcatta aaggaagttc ttttctaaat
     4141 aaagccctat cagtcattct aagtccatgc tctaaacttt ttacaaatct accatctata
     4201 tcattttcat cctttattaa atgtaaagtt gcatcatatc ctaattcctg ataacactta
     4261 taaagttcta ttttattttg cactggcgca cccatatctt gtatactatg atagcttaca
     4321 aaaatggtat ttttatttaa atttgattga atttgaagat ggtttgaatt taaaactgct
     4381 ctgattaaat aattttcatc accaaaataa taagaagaat tcatatttct attccagtat
     4441 ttatatacaa aacaataaag tctataacca cttccttcga aataaaattc cccttgattc
     4501 atttctcttc ctaaaatgca cgccaaaaat ggcaagcaaa cacctgaatt atca
//
LOCUS       DARGEM010000119         4466 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.119, whole genome shotgun sequence.
ACCESSION   DARGEM010000119 DARGEM010000000
VERSION     DARGEM010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4466
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.119"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..105
                     /locus_tag="SFZ78_001536"
     CDS             <1..105
                     /locus_tag="SFZ78_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212379.1"
                     /translation="RKSFMQENSISYPCGNKVFIFKDVGDKFELVIKD"
     gene            complement(119..340)
                     /locus_tag="SFZ78_001537"
     CDS             complement(119..340)
                     /locus_tag="SFZ78_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8212380.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(340..1401)
                     /locus_tag="SFZ78_001538"
     CDS             complement(340..1401)
                     /locus_tag="SFZ78_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG8212381.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            complement(1391..2953)
                     /locus_tag="SFZ78_001539"
     CDS             complement(1391..2953)
                     /locus_tag="SFZ78_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8212382.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDHTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFETRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            complement(2950..3366)
                     /locus_tag="SFZ78_001540"
     CDS             complement(2950..3366)
                     /locus_tag="SFZ78_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEG8212383.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            complement(3359..4252)
                     /locus_tag="SFZ78_001541"
     CDS             complement(3359..4252)
                     /locus_tag="SFZ78_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8212384.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIEEQCDCYLLILNDTLEETKFFIENGTYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGELITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            complement(4249..>4466)
                     /locus_tag="SFZ78_001542"
     CDS             complement(4249..>4466)
                     /locus_tag="SFZ78_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8212385.1"
                     /translation="YEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLEEEFEI
                     KFNKEDLSLLKSQNALLEKIQTLKAEK"
BASE COUNT         1457 a          708 c          637 g         1664 t
ORIGIN      
        1 agaaaatctt tcatgcaaga aaattccatc tcttatcctt gtggaaataa agtgtttata
       61 tttaaagatg tgggtgacaa atttgaatta gtgataaaag attaaaacct taaaggtttt
      121 aatcaagctt tgctaaattg attaaatcac ttactttttg acaatttttc aagtcctcgg
      181 ctgtgatttt taaagtaaaa agatttttat aaagcaccat cacagataca aaagccaaac
      241 tatcccactc atctatatca tcaagtagca tatcctcgtt taagtcttca tctctatgca
      301 tagcttcttt aagctcttct aaaaattcag tttttgtcat tatttctcct ttgtgtaaat
      361 taaaatatct tttgtgtata aatctttgaa attcaacacc gcacttcccc agctaagccc
      421 tgcaccaaaa gcacttaaac tcgctttaaa ttcttttgga gtatctagtt cacaaagtag
      481 ggcaggtagt gaacaagcgc ttaaattagc gtatttttcc atgatgaaat taggaacttt
      541 atcatcatta agttttaatt cttctttgat gcaatcaacc aaatacgcat tggattgatg
      601 aaaaagatga aaagcaatgt ctttttcatc tactttagaa aattctaaaa tttctttaaa
      661 gcttttaggt tcgcattcca aagccatatt gaaaatattt gctccgtcca tataaagatt
      721 ttctaattgt ctaaactcct cagtttgcat gagtgaatca tcgttgaaaa tatctgcttt
      781 aggtattctc atcgcacctt ttggaatgat gagtttatca aaatattttc catcgcttcc
      841 aagctcaaaa aaagcttcgt taaaatccgt tttttcaatt aaagttgcac ttactccatc
      901 accaaaaata ggagctaaat tcatattttt agggtggatg aatttgctta aagtatctcc
      961 acaaatgagt aaaattttac ctaagccact ttgtattaaa gaatgagcga caaataagcc
     1021 gtataaatac cctgcacaag cttgccctaa atcaaaagct acagttttgg agcttaaatt
     1081 taaaagttgg tgtaaataac aagccgtaga aggcatgaaa aaatcaggac tttgagttac
     1141 tacgatgagt gcatcaaggc tatttttatc tatatttaaa ccttgtaaaa gtgtattggc
     1201 tgcgtgtttt ccaagatcgc ttacgcaagt gttttcatcg caaatataac gcgtgtttaa
     1261 acctatgact tttttcattc ttttaagggt tttgatatcg tttgaaaaaa cgctttctaa
     1321 ctcatcatca atgcaaattt tatgttcagg tacgcttacg caaatgcctg aaattttagc
     1381 tttatcaaat ctagttttca tggattataa gtcctttgaa gtttaaattt tgaaatggaa
     1441 taagggctga gtttttttca aattctttgg aaatttgttc taaaaagctc aaaaatggca
     1501 tatttctttc gcctttttga tagtaaagcc ttgcattatt gtttttaaga tcaaagaaat
     1561 gtaaagctag ttcaaaggct ttaaaaaaca ttctagtttc aagttttcta cctaaagccc
     1621 tacaagaaat gcaaagatca tcgataaata aatttccttc tttacaagaa aaaacaaaaa
     1681 tagcgataat cccactatcg cttaatttat cactcatact cacacttaca atgagttctt
     1741 tttgcatgtg ttgtgcgact ttttcttgat ttaagcgtgt gtaattagcg ataaattgat
     1801 tggttttgcc taaaagttcg ctaatgcgag ggatattttg cagatcattt ttgctaaaat
     1861 ttaagctgat ttcaagattt tgaaaatatt cttcatcgct taagctttta agctcttctc
     1921 ttaaagcatt ggctgctata tctttggcac gaatttgatc ttctttggta tttgaaagtt
     1981 ttaaaagatt aggaaaaagt ttgattttat aaagtatatt ttcatcgcat aaaagtgttt
     2041 taacgcctgt aaatttggta ttttcaagct cggcgatatt atcatctata aaaagcatag
     2101 cgttagtatt tatattaaat tttttagcaa tttttaagat attttcaccc tttggttccc
     2161 aattgatcat tctagcatca aaatcatccc attgtaagat aaaatctttc cttgtttcaa
     2221 aaagtttttt tgcgtctttt tcttcatttt ttgaagctag ggcaagtaaa aagccttgtt
     2281 ttttaaaagt tttaattttt tcttgtaagg ttttgtgcaa aggacttaaa ttaagattat
     2341 ctataccctc ttcacctaaa attccttgat acaaggtatg atcaagatca agtacaagag
     2401 ctttaagagc gggttttacg agtgcaggga tgaggctaag tcctaaaatt tgtgctaaaa
     2461 aaatcaaggc tttattatta agcttagagc ctgtaagttc ttctttagct aggtctaaaa
     2521 tatcttcttc atcaaaatac tcttttatga gtttttctat gttaaaaatt tcacaattta
     2581 aaattttttt atctgtttta aattctccta aactaagaac taaaataggg ttttgtgaaa
     2641 tttttcttag ttctaaaagt ctttcttcta taaaattttg cacattattt ttatagcggg
     2701 ttaaatctag ccataaaagt tctaaactag cttctttaaa gttatcaaaa ctcaagctat
     2761 catcataaga gctgaaatta aactcagctc ttaaattagc aaaatgtaaa aaaggagcaa
     2821 tgatactttg cactccttca aaagcatgat ttctatggac attaataaga agatcttgac
     2881 ttttgctaaa gtctaattct ttggcgaatt ttataagctc attgcgtttt aaatggggtg
     2941 aaaaaagatt cattttagct ccacaagttc gattaaaagc ctatttggca tcatgataaa
     3001 acaaagttta gcaaaatagc ttgcttgcat aataggaaca atacaaatgc ctccttgttg
     3061 ttccaaaaga attaaatctt gggcgatatt tttactttca taggctaaat gatacatttt
     3121 ggtattattt ttcaaatagc tatctagtgg tcctttatcg tttaaatttt gcaaaagttc
     3181 aaatctatac tgtggaaatg cttcattaca aggaatgata aattcgcctc ttaccccttg
     3241 tttttcatct ataaattctg attctttata aaaacctagt ttaaaaaaac attccctttc
     3301 tttttctaaa tttttacaag ccacgcctat atgatgaagg ggtaaattga gtgttgtatt
     3361 aagcatttaa aactactgcc atagtgatag catttttaaa tttcaatgct ttttccaaac
     3421 tataatcatt tgccataaaa cattcataag ctttaaattt taagcctgat ttttctatca
     3481 aatctttaac ttcatcagga tgggaaaata aataaatatg atcaatagca ggagcattga
     3541 tagggatagt tgcaaaaatt tctcctccat cgctaagaag ttctttagat cttttaagaa
     3601 attcaagagg tttttctacg tgttctagca cttctccaat cactatcaaa tcagcttttt
     3661 tatcaaaatc ataagtaaaa aaatcttgac ataaaaaatc gcattttgta atcaattctc
     3721 ctacttgttg ttttaccatt ttttgagtaa gttcgcaact cgttggagag atatcaagtc
     3781 cataaaaggc tgaaaattta ccacttttaa ctgctcttgc gaagtattct ccatggccag
     3841 ggcctatttc aaaataagtt gtttttggag tgaaattttg caaatattgt gaaaaatact
     3901 ttctcacttt aatatgagct atccaaacaa aagaagaaag agctaggcct atcatgtatt
     3961 gtttcatata gctttcatta aaataaactt tatccttaac ttcatcaaag ctagaataac
     4021 gataagtccc attttctatg aaaaattttg tttcttctaa agtatcgtta aggatcaata
     4081 aataacaatc gcattgttct tctatgctga taccatcttg aatataataa gaaattaatt
     4141 tatcaaattc ctcttcgtct tcttgtgaaa attcaatttt tttaagatat ttagaatgga
     4201 taggattttt ttgagcgatg gcttgaaata atttttcaat attttctttc atttttctgc
     4261 ctttagggtt tgaatttttt ctagtaaagc gttttgagat tttaagagac ttaaatcttc
     4321 tttgttgaat ttgatttcaa attcttcttc taaactcatg atgatatcaa tatgagctaa
     4381 agaagtccag ttcttgcagt tttccatgct taaatttgta ttttcatcta ctttggtttc
     4441 aagtatattt tctaaaattt cataaa
//
LOCUS       DARGEM010000120         4459 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.120, whole genome shotgun sequence.
ACCESSION   DARGEM010000120 DARGEM010000000
VERSION     DARGEM010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.120"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..297
                     /locus_tag="SFZ78_001543"
     CDS             <1..297
                     /locus_tag="SFZ78_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8212386.1"
                     /translation="ALAGQKAAFKAIDKKASELYFIKISIEELLRDLKGAKVLIGYEV
                     SWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKTISADS"
     gene            324..833
                     /locus_tag="SFZ78_001544"
     CDS             324..833
                     /locus_tag="SFZ78_001544"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HEG8212387.1"
                     /translation="MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGINA
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            986..1225
                     /locus_tag="SFZ78_001545"
     CDS             986..1225
                     /locus_tag="SFZ78_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HEG8212388.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNATNKSEKEMEQTIYMIAA
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(1337..1642)
                     /locus_tag="SFZ78_001546"
     CDS             complement(1337..1642)
                     /locus_tag="SFZ78_001546"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212389.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNIMAIF
                     IFSYFASIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            1684..3906
                     /locus_tag="SFZ78_001547"
     CDS             1684..3906
                     /locus_tag="SFZ78_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEG8212390.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     SGLQKELNTLKLNANLRAELKAQRKGLQDELFSLGNIISGGIVGKSIKVGIDFESAMA
                     DVKKVTDLSEGHTLEGLKQDILDLSKKLPMTAEEIANIVAEGGKLGLASKEALEFGKT
                     ATAMGVAFEMSANEAGEAIGGLMANLQTDVKGIKDLGDSINYLADKGSSDAKNIVNIV
                     SRIGGMGNLIGLQRENMAALAATLDEVKIPAEVAGTAISSMFTKLSTADTLGAKAEEA
                     FSQLGLSGEFMKKALNRNSQEAINILLSRIKTLDKESQIGVITNIFGNDSGTIRAMAT
                     LVNGYDRYQELLKMTNSEEKKGSMDKELINKCETTASILKILGNNISALAIKFSDALL
                     PVVKLVASGFSFVIDIVDTLLSKFPVLSTIVATATTVFLLAKPAVLAYAIAKNYLKDC
                     TILLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFK
                     AVAIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLRPVWEPIY
                     NVIKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKL
                     SWVGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAETKSIN
                     HAPSFNNGNINISVNGTFNIATKDGNFNMQEFANTIQKSVFDALRKQEQNKINTTIYG
                     "
     gene            3910..4398
                     /locus_tag="SFZ78_001548"
     CDS             3910..4398
                     /locus_tag="SFZ78_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HEG8212391.1"
                     /translation="MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNERSIFNGKWQSLKPATIKQKIKDGKNKGILKRDGDLSNALNWQSEPTKSGVEVF
                     NNIQTKNGFKYGYVHQWGNRKRKIPQRAFLPIDNNKILHPSIRSVIYKDTKDFIVKIV
                     KK"
BASE COUNT         1661 a          544 c          878 g         1376 t
ORIGIN      
        1 gctctagcag gacaaaaagc agcttttaag gctattgata aaaaagcaag tgaattatat
       61 tttataaaaa tcagcattga agaattgcta agagatttaa aaggagctaa ggttttaatt
      121 ggctatgagg taagctggga tgaagaaaga aacacagatg ccaatgtgag tgctggtaag
      181 ttttatctaa atataaaaat gatgaataat ccaatcgtta aacaaatcac tttagagttc
      241 atctactctg atgaatgggc aagtgatttg attaaaacta ttagtgcgga tagttaataa
      301 atttttaaaa ggagaaaata aaaatgaaaa gaataattgg cgaagttata caggaaggta
      361 atatttatat agatggtcaa ggttatcttg gagtggttag aaatttaaaa ttgcctgata
      421 tagaacaaga gatgattgaa accaaaggag ttttaggagc aaattatagt agcggggttt
      481 taaagccttt agaaattagc tttaaattag ccgttgttga tccagtgctt tatgcggctt
      541 tctttcatac tacttttagt gagattaaag ctcctttgct ttttagagaa agtgttcaca
      601 aaggtggaaa aaactatggt attaatgctg agtttttagg agagtttata agcataagtg
      661 aaagtgatca tgaaagtgga aaagaggtgg aagctgaaat taaaatggca gttcattttt
      721 acatgcaacg ccgcaataac attccaatca ttacctacga tcataaaaac actattttaa
      781 tgataaatgg ggtggatatg atgagtgatg taagaagcaa tttaaccctt taaacactga
      841 ttaatcggag tttaattaac aatactggga ttttaggatt aaagtttggc tttttgggca
      901 ttgcgtagca atgggtgggg aagcctttaa ttgcttctca ggcggaatta cttccgccat
      961 aaagaaggat aaaaaggaaa gaaaaatgaa agaaaaaata atcaaacttg aaaatggcga
     1021 agaattaaaa atgagagagc caaatgtgcg tgtattaaaa aacgccacta ataaaagtga
     1081 aaaagaaatg gagcaaacta tttatatgat agctgcactt accaataagc aagaaagtga
     1141 aattgaagat ttgaatctta aagattttaa agctttacag gacgctctta aagatttttt
     1201 ggtagaagca ggagttatag cttagaggct atagctctta taagtcatac tttgcattgg
     1261 ggattaaatg aagttttaga tttaagctta gatgagtttg aagaagcttt agcaatttca
     1321 aaagaatttt taaaggctaa gagtttttga ttgttttatt tttcaaaaaa taaattttta
     1381 aaatagcaaa aagaataaaa tctaaactta ttacaattag ccaagtaggt aaaataagca
     1441 ataaagcaat gggtggcata atcatcacta aaatagcagt tatgataatg cttgcaaaat
     1501 aagaaaaaat aaaaatagcc attatattaa aaaaaccatc acttgcactt tgatagctta
     1561 tgtaaaaagc aggtatgagc gttgttaata ataaggcaat atgtgaaatt atatcatcgt
     1621 taataaattt taaaactttc atagtaaaga ttttaaaata caatcgctta aaaagggttg
     1681 aatatggaaa atgctggaag tattggaatt ggtgttattt taggactagc gattaaaaac
     1741 gcaagtgccg ttggcaaggt agttaaagat tttagcaatt tagaaaaaat agcagcaaaa
     1801 actaaactcg gcattagtgg attgcaaaaa gaattaaaca ctcttaaact caatgccaat
     1861 ttaagagcgg aattaaaagc tcaaagaaaa ggtttgcaag atgagctttt ttctctagga
     1921 aatataataa gtggtggtat tgtagggaaa agtataaaag ttggtattga ttttgaaagt
     1981 gctatggctg atgtaaaaaa agtaacagat cttagtgaag gtcatacact agaaggctta
     2041 aaacaagata ttttagattt atccaaaaaa cttcctatga cagcagaaga aattgcaaat
     2101 atagtggcag agggtggaaa acttggtctt gcctctaaag aagctttgga gtttggtaaa
     2161 actgctactg ctatgggtgt tgcttttgaa atgagtgcca atgaagcagg agaagccata
     2221 ggtggtctta tggcaaacct tcaaaccgat gttaaaggca ttaaagattt aggtgatagc
     2281 attaactatt tagctgataa aggttcaagt gatgccaaaa atatagtaaa tattgtgagc
     2341 agaattggag gaatgggaaa tcttatagga cttcaaagag aaaacatggc agctcttgct
     2401 gctacgcttg atgaagtaaa gatcccagct gaagttgcag ggactgctat ttctagcatg
     2461 tttactaaac tttcaactgc tgatacttta ggagctaagg cagaagaagc tttttcacaa
     2521 ttaggtctta gcggggagtt tatgaaaaaa gctttaaatc gaaattcgca agaagcaatc
     2581 aatattttac tttcacgaat aaaaacgctt gataaagagt ctcaaatagg tgttattact
     2641 aatatttttg gcaatgatag tggcacgatt agagccatgg caactttagt taatggttat
     2701 gatcgttatc aagagctttt aaagatgaca aattcagaag agaagaaagg ttcaatggat
     2761 aaagagctta ttaataagtg tgagactaca gcttctatat taaaaatttt aggaaataat
     2821 ataagtgctt tggcgattaa attttcagat gctttactcc ctgtagttaa attagtcgct
     2881 tcaggattta gctttgtaat tgatatagta gataccttac tttcaaaatt tccagtgctt
     2941 agtaccatcg tagctacagc tacaacagtt tttttgctcg ccaaacctgc agtcttagct
     3001 tatgctattg ctaaaaacta tcttaaagat tgcaccattt tacttaaaag tgctttgatt
     3061 aaaacaagaa tacatctttt agcttttcgt aattcttgta tattatctaa tattacttta
     3121 aaagcaaaaa ccgtcacaac tactatttac acaacctccc ttaaagcctt atcttttgtt
     3181 ttaggtgggc ttaataaagt ttttaaagcc gtagctattg gtattagagt gttaagcatg
     3241 gctatgatga gtaatcctat tggtcttatt ttagggggca ttgcaatagt ggctgggctt
     3301 attattgcaa attgggataa ggttaagtct tggtttaaat cttttataga atggcttaga
     3361 cctgtttggg agcctatata caatgtcatt aaagcagtat ttgataaatg tgcccttgta
     3421 tttacaagct ttaaagatat tattatgagt gttgcttctc cattagctga gtttttaaat
     3481 tctatttggc aaggtgttgg ggatttcttt tatagtattt ttggttcttt atttgattgg
     3541 tttgcttcta agctttcttg ggtaggagat atgatctcat ctataagtgg ctttataaaa
     3601 gatgctcttg attttgtagg gcttggagat gatgaagaag ttaagataag tcaaagtgaa
     3661 caaaacaaag aaaaagtctt tactacaaac acttataaag atgaattagc tgagacaaaa
     3721 agtataaatc atgctccaag ctttaataat ggcaatatca atataagtgt taatggtact
     3781 tttaacatag cgactaaaga tggcaatttt aatatgcaag aatttgcaaa tactatacaa
     3841 aaaagtgtat ttgacgcttt aagaaagcaa gaacaaaaca aaattaacac tacaatttat
     3901 ggataaaata tgagtgaata tatagaaata aaagggcttg aaaacttttt taaagcttgt
     3961 gataaattaa tagatatgga taaacacggg caaagcatta tggcgggtgc tggagagagt
     4021 ataagaaata gcattataga ctcttttaaa aacgaacgca gtatttttaa tggaaaatgg
     4081 caaagcttaa aaccagctac cataaaacaa aagataaaag atggtaagaa taaaggaatt
     4141 ttaaaaagag atggggattt aagcaatgct ttaaattggc aaagcgaacc taccaaaagc
     4201 ggagtagaag tctttaataa tatacagact aaaaatggct ttaaatatgg ttatgttcat
     4261 caatggggaa acagaaaaag aaaaattcct caaagagctt ttttacccat agataataac
     4321 aaaatcttgc acccaagtat aagaagtgtg atttataaag atactaagga ttttattgta
     4381 aaaattgtta agaagtgatg gcaaggaaga ctaaagcctt cctttttcta aaaactagca
     4441 aaagcattat agctttgtt
//
LOCUS       DARGEM010000121         4215 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.121, whole genome shotgun sequence.
ACCESSION   DARGEM010000121 DARGEM010000000
VERSION     DARGEM010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.121"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..228)
                     /locus_tag="SFZ78_001549"
     CDS             complement(<1..228)
                     /locus_tag="SFZ78_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212392.1"
                     /translation="MKYKWIVKNTYIDFKLNNLYMLINPSDKIYLEEDVCYYLEIYIK
                     YRIFNNCILVCDMLDNWWKLISSTLHLDKSHI"
     gene            complement(230..4003)
                     /locus_tag="SFZ78_001550"
     CDS             complement(230..4003)
                     /locus_tag="SFZ78_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG8212393.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKNEIDLAISKDEFSKYLEVFIEAKKPN
                     SKEFITHAKVNSKALHEAILYYFRNRQLSFSLKFIIITDFYKFYIFKISEFEELFYKS
                     PSFLKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     KLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMGKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DRGGVLSYITSNKYTRAGYGEALREFLLKNVKVLEYTDLNGIKVFDSATVDTSILCFE
                     KSKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAK
                     IERIGTPLKEWQGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKM
                     LRGRDIKRYSYEWAGLWVIFIPWHFPNVEKPKTMLENEQDLKEQYPSLYKHLLSHKER
                     LSKRNKEETGIRYEWYCLQRWGANYYQEFEKEKLGWQRITQEPSFILERECILLDSMA
                     FMVANSKNELKYLLGFLNSSLIFYYFKNIGHLYSDKGFLLSNQYVEKFPIPKINSKNQ
                     KIADELINLVDEILKAKEQDKNANTQELENKINSLVYKLYNLTEEEIKIIEGR"
BASE COUNT         1299 a          665 c          583 g         1668 t
ORIGIN      
        1 tatatgactt ttatctaaat gaagagttga agaaatcaat ttccaccaat tatccaacat
       61 atcacaaact aaaatacaat tgttaaaaat tctatatttt atgtaaattt caagataata
      121 acacacatct tcttcaagat agattttatc tgaagggtta attagcatat ataaattatt
      181 aagcttgaag tcaatataag tatttttaac tatccattta tatttcatgc tatcttcctt
      241 caattatttt tatttcttct tcggttaagt tatagagttt ataaaccaaa gaattgattt
      301 tattttctaa ctcttgggtg tttgcgtttt tgtcttgttc tttggctttt aaaatttcat
      361 cgactaaatt tataagctca tcggctattt tttgattttt agaatttatt tttggtatag
      421 gaaacttttc tacatattga tttgataata aaaagccttt gtcagaatac aaatgtccta
      481 tatttttaaa ataataaaat atcaaactag aatttaaaaa ccctaaaaga tatttgagtt
      541 catttttaga atttgctacc ataaaagcca tagagtctaa caaaatacat tctctttcca
      601 agataaaact tggctcttgt gttattcttt gccaacctag cttttctttt tcaaattctt
      661 gataatagtt tgctccccat ctttgcaaac aataccattc ataacgaatt cctgtttctt
      721 ctttatttct tttagataat ctttctttat gagacaacaa gtgcttatat aagctcggat
      781 attgttcttt taaatcttgt tcattttcta gcattgtctt tggtttttca acatttggaa
      841 aatgccaagg tataaatatc acccaaagtc ccgcccactc gtaactatat ctttttatat
      901 cgcgtccgcg tagcattttg cgtatgagtt tagcggtgcg ttctttttcg gcttcatctt
      961 tgcaatttgc taaaatttca tttctttttt cagtggtgat gataaaggct tcattatagc
     1021 ctgttaaaat tccacgatat atattaagtc cttgccattc tttaagcgga gttcctatgc
     1081 gttctatctt agcctttaag gcactagtat tctcatcgct aaaagtgaag ctttctttgc
     1141 ttaaagaatt ttgcgaaaat tctgcaaagt ccttatataa gccaatgtca taagcacaag
     1201 tttttaaaat ttcattgctt agggcaaggt atttgaattt attatctttg ctttttgatt
     1261 tttcaaaaca aagtatagaa gtatctaccg tagcactatc aaaaactttt atgccattta
     1321 aatcggtgta ttctaaaacc ttaacatttt taagcaaaaa ttcacgcaaa gcttccccat
     1381 atcctgcacg cgtgtatttg ttagaagtga tatagctcaa tacccccccc ctatctttta
     1441 aaacattaaa tcctagttca taaaaataag tataaatatc gctcgtgcct ttataaacct
     1501 tataattttt agctaaatgg ggcttgagtt ctttaagctc ttcttgtctt atataaggtg
     1561 gattgccgat gatgagatca aagcctttga aatttccatc atcgtccaaa atttcaggga
     1621 attcaaaacg ccattcaaaa ggatgattgc tttctaggtt gaagatattg tcgtattctt
     1681 ttttaagatt tgcaaattct tttgtggctt ctttttcatc aaagtcaaaa agagtcaaat
     1741 tcgcactaac aaagaatttc aaattttcat catctacggc taagaaattt ccgtattttt
     1801 tagagtattt ttcacattta tcgttaaagc ttttcatttc ttttttaaat ttatctgcaa
     1861 agcagaaatt tttaaaagaa attttgagat tttttatctc ttggttgatg tggcttttat
     1921 ccgtgtaaaa gccttcttta tagtctttta ctatgcgttt gtatttgccc atacgttctt
     1981 tgatgttagg atagtggttt aggcttttgc ctgtttcaaa gtaagatacc aaagaatttc
     2041 cgcattttat gtttatatcg atgtttggca atgttttaag atcgtgataa ttttcatcat
     2101 caaagctttg ataaaaactg tgttttaaaa gctctatcca aagccttagc ttggtgatct
     2161 cgcatgagtt agggttgata tcgactccaa aaaggttgtt ttctatgatg tcttttttgg
     2221 tatgaaaaag ttcttgctgg ataagatggg ctttatcttt aggcgtgctt gggcgtttat
     2281 actctataaa ctcgcctttt ctacccgtga tgagaatttc atcgttttgc acttctagat
     2341 aaaattcttc atcaaaaaga tttaactcat cataaatgct tagcataaca tttaaagcag
     2401 aaactaaaaa atgcccgctt cccaccgcag gatcgcaaat ttttatagag tttaaaagct
     2461 ctttttgtgc ttttttgtct tcttttctta aagactttct tagttcgctt atatctttag
     2521 catcaagatc aaattgagcg ttgaatttat caagcacaac ttttgtgatg ctttctttgc
     2581 acatataaga agtgataaag cttggcgtgt aaaagcttcc ttctttgtag ccattgagtt
     2641 tttcaaacac atttcctaaa acacttgaac ttatgagttc tttttggctt aaaatttcgc
     2701 tttgctcatc atcgctacca aaatcaaaac tatccaaaaa ttcaaacaag tattctaaaa
     2761 gccccacttg tcctttttta gccttgcatt tatcatcttt tagcacggtg tttttatagt
     2821 aaaaaagctt taagtcatta cttaagcttg aaatttcaag cgtgttttct atgctttgtt
     2881 tttcaaacaa agaagaattt agataaggca gataagcaaa ttcgcttttc tttcgcgtgc
     2941 ttttttcttt ggctaaaact tcaaagaaaa gttcgctaag cttgtcaaaa tcagggattt
     3001 ttttgaaatt taaaaatttc aaatttttat catcattaaa acgcaccaaa tttgactcta
     3061 taagctttaa aaacaaaatg cgattaagcc ataagatcaa aagttttaag atggtttcaa
     3121 aattttcttc tttaagctta gaatttatag cggtgtagaa agtgccttgc tcttctttgc
     3181 tttcttcact ttttgcgatg atgagttttg agttttgttt gctctcacaa agccctaaga
     3241 tatataaaag ctctttgtaa aaagcgttgt tgagtgaatt tgcatcgttg gggttaaact
     3301 cacttaacaa aaagtctcta tgaaaagttt tataaatact tgctagcttt ttaaaatttg
     3361 atttttgttt gtcttttaaa aatgtcaagt caatcaaaaa gccttttaaa ttttctttgg
     3421 aattttctat gagtttagct acttctttat aaaactcttc ggtattgcct ttgaaaagtg
     3481 aatttgggtt gcaaaattct tcaaaaagtt ttaaaaaact tggactttta taaaaaagct
     3541 cttcaaactc actaatttta aaaatgtaaa atttataaaa gtctgtgatg ataataaatt
     3601 ttaagctaaa actaagctgt ctatttctaa aataatacaa aatagcctca tgcaaggctt
     3661 tagaatttac ctttgcgtga gtgataaatt cttttgaatt tggcttttta gcctcgatga
     3721 aaacttctaa gtatttacta aactcatctt tagagatagc taagtcaatc tcatttttgc
     3781 ctttttgctt ggtttttata tgggttttga aatttaacat agttaaaaat ggactaagtg
     3841 cgttagctac aagataatct tcattttcac tttgcgaact ttcaagtctt tctagatatt
     3901 gcattaaagc cttgttaaat atatcaaatt cattttgcat gatttgcttt ttgcggtagt
     3961 atgggttgaa aaaatctttt tcatttagca aagtgaaatg catttttaac ctttataaaa
     4021 aatattttgt attttatcaa attttacttt tatataaaat tttttaagaa tttaatatat
     4081 cattaatacc tttatatgct tcctgtatag gttttttaat aaaaaaatca tttaaaattt
     4141 gaataaaatc ttttttagaa ttttgatttt caatcaacca ataaataaaa gcgtattctc
     4201 cttctaattt ttcat
//
LOCUS       DARGEM010000122         4191 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.122, whole genome shotgun sequence.
ACCESSION   DARGEM010000122 DARGEM010000000
VERSION     DARGEM010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.122"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            76..882
                     /locus_tag="SFZ78_001551"
                     /pseudo
     CDS             76..882
                     /locus_tag="SFZ78_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830163.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            879..2210
                     /locus_tag="SFZ78_001552"
     CDS             879..2210
                     /locus_tag="SFZ78_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG8212394.1"
                     /translation="MNSTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLKRYYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNFIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSENEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(2199..3002)
                     /locus_tag="SFZ78_001553"
     CDS             complement(2199..3002)
                     /locus_tag="SFZ78_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG8212395.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLILLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(2995..3849)
                     /locus_tag="SFZ78_001554"
     CDS             complement(2995..3849)
                     /locus_tag="SFZ78_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG8212396.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YEKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(3862..>4191)
                     /locus_tag="SFZ78_001555"
     CDS             complement(3862..>4191)
                     /locus_tag="SFZ78_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8212397.1"
                     /translation="QIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILGKEPKS
                     KDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELLKTA
                     DAFSHNL"
BASE COUNT         1628 a          554 c          617 g         1392 t
ORIGIN      
        1 aaagctatct taaactattt gaaatcacaa ggtttaaaag attataaaga aaaagatgaa
       61 aaaataaatt taccttatat aatcatcatc gatgaaatca atcgtggtaa tgtaagtaag
      121 atttttggtg agcttataac cttgatagag cctagtaaga gattaggaaa tgaagaagca
      181 ttagaattaa ctttgcctta tagtggtgaa aaattcggag tgcctaaaaa tgtttatatc
      241 ataggcacta tgaatacagc cgatagaagc ataacttctc ttgatacagc tttaagaaga
      301 agatttgaat ttgttgagat gatgcctaat tctgatttac ttaataatgt ttttatttgt
      361 aaagatgtag aaaatccaaa tgaagacgaa gattatttag gagatgatgc taaaacagag
      421 ggttatgcag agatacttca aaatatttta ataagtataa ataaaagaat tgaattttta
      481 ttagatagag aaaaaactat agggcatgca ttttttatga gtgaagctgt taaatttaat
      541 aaaaataatt ggattaagcc agatgaatat gaagaagatt ggtatgtttt aagtatctca
      601 aagttaaaaa aagtttttca aaataaaatt attccgcttt tgcaagagta tttttataat
      661 gattatgctt tgattaatga ggttttaaat gataatggta tgatttttga agataaaaaa
      721 gatgataaat atcttcaaaa aataaaaaat ctagatagtg ttaatagcga gagaagtatt
      781 tataatattg cttcatttga tgataaaatt tgggataaaa tagaaatata tcaagcaatt
      841 tataatgatg aaatagcaaa taaattaaaa aaacgaaaat gaatagcact ttttccatca
      901 tcgaatacca agctttttct aaagaagatt taaaagaaat tttcaaagaa aaggccgaag
      961 ggttttataa agagctagaa gactttgcaa aaaataatga aaatcttcta ggctttaaaa
     1021 acaaaaattc cttaaaagct aaaaattatg tcggcattat acagactaaa agcggggttt
     1081 tggagatttt gccaaaatgc acgaatttag atagttataa aaaagaagat agttcttcaa
     1141 atcacgataa agaaaaacta aaaagatact atgaattaga caatatttct aaaaataatg
     1201 atttttatga aaaagatttt aaatttaatc ctaaaaatct tttgataaat atgctaaaaa
     1261 ccttaaaaaa ctcccccttt aaaaaatcac aaatttcatc tttgcaaagt tctaaaattc
     1321 ctttatttga agtgtttatc actatgtttt tagatgaatt tgatagcgtg tataaaaaag
     1381 gcttgatgag atcttatcta agttgcgaag aaaatagggc ttttttaaag ggaaaattac
     1441 tatttaacga gcatatcaag caaaatttta tacacaaaga aagatttttt acaagcaacg
     1501 atgagtttgt tttagatata gcacccaatc gtttgataaa atcaacgcta aattttttaa
     1561 aatcaaaaac aagtttgaat aaatttagac ttataaaagc catgcaaatg cttgatgagg
     1621 tagaattttc taaaaattat gaaaaagatt ttagctataa aatttcaaga cattttgatt
     1681 attatgaaaa cttgcttttg tggtgtaaaa ttttcttaaa aaatgaaagt tttatgcctt
     1741 atcatggtaa aaatgaagct tttgctttgc tttttcctat ggagaaaatt tttgaagatt
     1801 atgtagctta tatgctaaaa aaagtaaatc cagctcaaga tattaaagtt caaaacaatg
     1861 gaaagtattt aatctcaaaa aatgatgaaa attgtttcat gttaaagcct gatttatata
     1921 tagaaaataa aatgatccta gataccaaat ggaaaattcc aaatgatagt gaaaatgaga
     1981 aaaaacaggg tatagaacaa agcgatttgt atcaaatgtt tgcttatgct tgcaaattta
     2041 aaatttatga tattaaactt gtgtatcctt tatgtgaaaa aactcaagat ttacaaagaa
     2101 aaatcgcaga aaaatttttt gtttttaaag caagcgaaca tttgtatttt aaagaacaag
     2161 ggcaaaaaga tataaaagtc caagtatttt ttgcaccttt acctttttaa aaatttgcct
     2221 atcaaatgca ctaaaaaacc aaagcaagct acagctatga tgcaagcacc gcttgagaga
     2281 ttaagataat aactaagtat aagtcctaaa acacaaaaaa tcatacttaa aaaacttgcc
     2341 aaaatcatga taaagccaag tcttttggta aaattttcag caataaagct tgggatacta
     2401 agtaaagcca taactaaaat aagccctaca aggcgtatgg aaataactat gcaaaaagcc
     2461 ataagggcga ttaaaagata atgaaaaaaa cttgtattga taccacgaac ttttgcaaat
     2521 tccgcatcaa agcttaatgc ttcaaattgt ctataaaata ataaaattaa aagcaccacc
     2581 acgctatcaa ccaaagccat aagccataaa tcttgtgttc ctacagccaa aatgctccca
     2641 aaaagataag ccattaaatc tgtgttataa ctagggctta aatcgattaa aataatccca
     2701 acagccattc caaaagccca tattacagcg ataatactat cacttctgtg ttcatagtgt
     2761 ttagctaaaa aagctactaa aaaagccaaa aataaagtaa atattcccgt gcttaataaa
     2821 ataggcaaag agaaataaaa agctatacct ataccaccaa aagccccatg tgttatacct
     2881 ccagccatag aaaaaaggcg atttatcatc accaaagtgc ctatgatccc acaagctata
     2941 ctgactaaaa tcgctcctag taaagcgttt tgaaaaaagg tgaaatttaa aatttcaagc
     3001 attattttcc tttgaaaatt ttaaacaaaa attttctttt ttaaattctg tttttttcaa
     3061 atttcttctt gtaaattctt gttcgcatag ttttttgcta tcgcaatttt tttcatcgca
     3121 aaaacaagta tttaaactca tttctacatc acaaaaatga gagtgatttt cgtataaatg
     3181 ttttaaaaat gaactttttt ctttttcttt agtgttagta tgcaagaaaa gttctttgtt
     3241 taaatgtgca attttatcgc tataagctaa tacaaggttg atatcgtgac aaatgagtaa
     3301 aattcccatg cctttttggt gcaaagagct tagaagttca aaaatttgta tagcagactt
     3361 gttatcaacg cttgcggtag gttcatctaa aataagcatc ttacattcac tagctaaggc
     3421 tcttgcgata aaaacacgtt gtctttgtcc tccgcttaga gaatcaattg ttttgttcca
     3481 aaatttttcc attcctacac tttttaaagc ttgcatagct ttttctttat cttttttctc
     3541 ataaaaacca aaaatttttt tacttacaag tcccataaga acgatttcaa gtactcttgg
     3601 acaaaaatta ggattggcta gagtgtgttg aggaacatag cctatttctt ttctttgaag
     3661 agctttgaaa tggatttcat ttttggattt taaaagtcct aagataagtt ttacgagtgt
     3721 tgattttcct gcaccatttg gacctatgat agagagaaag tctttattgt catagctaag
     3781 attgatgttt tttaagatga tttcattatc ataagcgtag tttagattag aaatttcaaa
     3841 aaaaagcatc aaaaaacctg attataaatt atgagaaaag gcatcagcag tttttaaaag
     3901 ctcattttcc caatcataag ataaatgatc tattttgtaa atttttgcat cacattcttt
     3961 ggcaagtgtt tttgctgcat tttcagggaa accattttga acaaaaatga cttttaaatt
     4021 tttatctttc attagagtga taagtttttg caaatcttta ctttttggtt ccttacctaa
     4081 aatttctaca ggaatttgcg taagattata gcgttttgca aaatatgtcc aagaaggatg
     4141 ataaactaca aattctctat tttttaattt ttctaatttt gaggcaattt g
//
LOCUS       DARGEM010000123         3977 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.123, whole genome shotgun sequence.
ACCESSION   DARGEM010000123 DARGEM010000000
VERSION     DARGEM010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.123"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..329)
                     /locus_tag="SFZ78_001556"
     CDS             complement(<1..329)
                     /locus_tag="SFZ78_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8212398.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKEC"
     gene            complement(342..1430)
                     /locus_tag="SFZ78_001557"
     CDS             complement(342..1430)
                     /locus_tag="SFZ78_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG8212399.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FIYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSSANIN"
     gene            complement(1443..2357)
                     /gene="ilvE"
                     /locus_tag="SFZ78_001558"
     CDS             complement(1443..2357)
                     /gene="ilvE"
                     /locus_tag="SFZ78_001558"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG8212400.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            2533..2739
                     /locus_tag="SFZ78_001559"
     CDS             2533..2739
                     /locus_tag="SFZ78_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG8212401.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            2736..3191
                     /gene="bcp"
                     /locus_tag="SFZ78_001560"
     CDS             2736..3191
                     /gene="bcp"
                     /locus_tag="SFZ78_001560"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG8212402.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDEIGRIAQIYSNVRVKDHALKVLESL"
     gene            3191..>3977
                     /locus_tag="SFZ78_001561"
     CDS             3191..>3977
                     /locus_tag="SFZ78_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG8212403.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRF"
BASE COUNT         1328 a          573 c          662 g         1414 t
ORIGIN      
        1 ttacattctt taaaattatt ttttgaatta tttgtaatgt taaaatcaac aattaaatca
       61 tttgagcttt gtatcatttt ttgatctgta atagcgattt ttcgagttct tacttcattg
      121 tctattagtt tatacccata gatataaact aaaaaacaaa taataatatc aaatgcaata
      181 ataaaaagtg ctgctatagg tctatggcgt aaaaatacgc aaagaagtaa aacacaagtg
      241 aagagaaaaa aaactaataa aatcagcata taatctacta aatataaatg agtagtgtaa
      301 aaaagcacaa tttctcttag tttctccact tgcgtatcct tttagtttat gttggcagaa
      361 ctttgctttt tagcatcttt ggtatcaacc caaatgtttg gcactgctcc acctggagtt
      421 aagaaaattt tagcatcttg attgactttt aaggcttcat taaattcttt ttgagtttca
      481 atttgtttta aatttagcaa aggggtgttt aagctgtttg cgatttcttt attagaataa
      541 gcttgtgcat ctgcttctat cttaacagcc atagctttac ctttggcgct gattatggtt
      601 gcatttgctt ccccttcagc taaagcagct ttttttaagg cttcttgatt agctctttct
      661 acttcatatt tagttctttc agcctcttgt tttgcaattt gtacgcgttc gatttgttct
      721 tttacttttg aaggtaaaat aatttctcta agttgtacag cgcgaagttc tacaggttcg
      781 tttggttggg cttctatggt ttttcttata ccttcttcta tttgagcggc tattgtatta
      841 cgattagtag gaagttcttc ggctgtatat tttcctacaa cacttcgcac tacatcacga
      901 acaactggat cgataatttt attttcccaa tttaagctcc aagtagctat agtttgagga
      961 acttgcagag gatttaagcg gtattgtact gtaacatcaa tagatacagg caatccacga
     1021 gagtcaagca cagaaatact atttttatta ataacacctg aacctgaaga taaattttca
     1081 ttacttccct ctatagaagc atagttgatt tgtcttactc tagtatcgat tatggttatt
     1141 ttttgtacaa aaggtaagaa aaagtgaagt cctggttcta atggatttgg gtcatattta
     1201 cctgttgttg atttaattcc catttcccca gaatttatca ccataaaagg ttttgcaacg
     1261 attaaaaata agataataat aatcacccca taaataaatg gagagaattt tccaaaacct
     1321 ttaaaattaa attctggtgc tttgaaattg aaattttgac ggttgttgtt tccgttattg
     1381 ttagaatttc tatttttttt attgaaataa tcatttaaat cagctggcat ttatttcctt
     1441 ttttaaatat aagttagcat agatgcgtat ttttcattgc gtccataaac tacatcaaaa
     1501 taagcatctt gaagtttttt agttacagat cctcttaaac catttcctat tattcttgca
     1561 tcaatgttgt taataggtgt gatttcagcg gctgttccgg taaaaaatgc ttcatcagca
     1621 gtataaactt catctcttga aattctttgg cgaagcacgg tgataccaag atcgtgagcg
     1681 attttaagca ctgtatcttg agtaatgctt tttaaagaaa aatcatttgg aggtgtgatt
     1741 aaaaccccat cttttacaat aaagaaacat tctcctgttc cttctgcgat aaaaccttct
     1801 tcatcaagca ttaaagcttc ttcatagcct gcttcaatag cttcaaattt tgcaatttga
     1861 gagttaaggt aattcgcgct tgctttagct tttcccatgc atgatttaac actatttctt
     1921 gcaaaagacg aaatttttac ttttatgcct ttttctaaac cttcttctcc aaggtaagca
     1981 ccccattccc aagccgcaat tccaactctt acaggagctt ttatatgata aagtcccata
     2041 actccatcgc ctaagaaaat caaagggcgg atatagacat tgcttttaaa attgtttgct
     2101 tttaagagtt caatttgtgc attttcaagc tctttttgag aaaaaggaca atttaaaaga
     2161 gtaatttttg cagactctaa aagtcttttg gtgtgatctt caagtctgaa aattgctaag
     2221 cctttatctg ttttataggc tctagttcct tcaaaaacag cattgccata atgcaaagaa
     2281 tgggttaaaa agtgcaaagt tgcatcttta aaatcaacta attttccatc catccaaatt
     2341 ttatctgctg agatcatttt tttacctttt atagttgttt atttcttaaa aaatattatt
     2401 ttaagaataa atcgggattt tatcaaaaat atactaacaa taagctttta ttaaattaag
     2461 gttttttgtt aaaaaaaata ttaggtattt tttgaaataa ttatgaaaaa ttatcgttaa
     2521 aaaggagaaa ttatgccatt agtaaatatt aaattagcaa agccgtcttt aagcaaggaa
     2581 caaaaagcgg agcttatagc tgatattacc aaacttttaa gcacgaaata taataaaagt
     2641 aaagaaagag ttgtggtggt tttagaagat gtagaaaatt atgacatagg ctttggcgga
     2701 gaaagcgttg aagctatcaa agcaaaggca attaaatgag tttaaacata ggagataaag
     2761 cacctcagtt tgagctttta aatcaagatg gggtaaaaat agcattaaaa gattttattg
     2821 gcaaaaaggt gattttgtat ttttatccaa aagataatac tccaggttgc actacagagg
     2881 cttgtgattt tagcgcaaat tatgataaat ttggtggtaa aaatgcagtg attattggta
     2941 tcagtcctga tagcgtggca agtcatgaaa aatttatctc taaatttgat ttaaaacata
     3001 ttttacttag cgatagtgaa aaagaagttg ctaaagctta tggagcttgg gggcttaaaa
     3061 aaaattacgg aaaagaatac gaaggtctta ttcgctctac ttttgttatt gatgaaatag
     3121 gtaggattgc tcaaatttat agtaatgttc gtgtaaaaga tcatgcttta aaagtgcttg
     3181 aaagtcttta atgttggtgc atatttgttg cagtgtggat agtcattatt ttattgaaga
     3241 acttagaaag acttatcctg atgaaaaaat tataggatac ttttatgatc caaatatcca
     3301 tcccttaagc gaatacgaac taagattttt agatgtaaaa agatcttgtg ataaacttgg
     3361 tattaagctt tataaaggtg agtatgagta tgaaaaatgg cttaatgctg tgcgtggtta
     3421 tgaagatgag cctgaaaagg gtgcaaggtg tgaaatttgc tttgatgtaa gaatgggatc
     3481 tagtgttaaa tttgctgcta aaataggaga aaaaaagctt actactacgc ttttaaccag
     3541 ccctaaaaaa gatttagaac agttaaaaaa tgctttacaa aaagaatgtg agccttatgg
     3601 agtagagttt ttagctcctg attttcgtaa aaatggcggt actcaaagac agtttgcttt
     3661 agcaaaaaag gaaatgcttt atcatcaaaa ctattgcggc tgcatttatg ggcttaaaaa
     3721 acaaaaacaa gataagaatt ttattgatga attaatgtct cctgtaaata agcaaatttt
     3781 acctgcaagt atagaagcaa gaatagctct ttataaaaaa gtagttttat gggaaaaaaa
     3841 aggtataaaa tttgaaattt taagagagaa atttttaaat tatcgtcttt taagtgcttt
     3901 gataaaatta gataaaaagc ccgttaaatc tcatatttta ttttattcgc attttaaaaa
     3961 cgcttataca agatttt
//
LOCUS       DARGEM010000124         3939 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.124, whole genome shotgun sequence.
ACCESSION   DARGEM010000124 DARGEM010000000
VERSION     DARGEM010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3939
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.124"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            110..550
                     /gene="rnhA"
                     /locus_tag="SFZ78_001562"
     CDS             110..550
                     /gene="rnhA"
                     /locus_tag="SFZ78_001562"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG8212404.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            537..1211
                     /locus_tag="SFZ78_001563"
     CDS             537..1211
                     /locus_tag="SFZ78_001563"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG8212405.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            1211..2299
                     /gene="aroC"
                     /locus_tag="SFZ78_001564"
     CDS             1211..2299
                     /gene="aroC"
                     /locus_tag="SFZ78_001564"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG8212406.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(2385..3368)
                     /locus_tag="SFZ78_001565"
     CDS             complement(2385..3368)
                     /locus_tag="SFZ78_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG8212407.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            3463..3624
                     /locus_tag="SFZ78_001566"
     CDS             3463..3624
                     /locus_tag="SFZ78_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212408.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            3628..>3939
                     /locus_tag="SFZ78_001567"
     CDS             3628..>3939
                     /locus_tag="SFZ78_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212409.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ES"
BASE COUNT         1322 a          525 c          749 g         1343 t
ORIGIN      
        1 ttttcatacc gttgttctga gtgtaaaaat gttatgcctt tgttttttta tcactgtcct
       61 gtttgttatg agtttaatac ttgtaaaatt atttatgaag tgaaaaacaa tgaaacacat
      121 tgaaatttat acagatggct catgtcttaa taatccaggt tttggcggat gggcttatat
      181 tttgcgttat aaggagtatc aaaaggaagg ttttggagct gaggctaata ccactaacaa
      241 tagaatggag ctaatggcaa ttattgaatc tttgaaggct ttaaaagagc cttgtgaaat
      301 ttcgcttttt acagattcta atctaatggt tcaaagtatt aatgaatggc tagaaggatg
      361 gataaaaaag gattttaaag gtaaaaaaaa tatagattta tggaaggaat atattaaagt
      421 ggcaaaatct cataagatta aggctttttg ggtaaaagca cataatggac atttggaaaa
      481 tgaaaggtgt gatacattgg cgcgtgaagc tgctttgaaa attgcaaggg aaaatgatga
      541 aaaacattga aaagctagag cagagtttaa cttatgaatt taaagataaa aatcttctta
      601 tacatgcttt aacccataaa agttttaaaa aatcttacaa caacgaacgc ttggaatttt
      661 taggtgatgc cgtgcttgat ttagttgtag gtgaatacct ttttcataaa ttcgccaaag
      721 atgctgaagg agatttatct aagcttagag cagctttagt gaatgaaaag tcttttgcaa
      781 aaattgcaaa tagtttaaat ttgggcgatt ttattcttat gagtgttgct gaggaaaaca
      841 atggaggaaa agaaaagcct tctatacttt cagatgcgtt agaagccatt ataggtgcta
      901 tacatttaga agctgggttc gagtttgcaa aaactattgc tttaaggctt atagaaaaaa
      961 atttccctca aattgatgca aaaattctta taaaagatta taaaacaaaa ttacaagaga
     1021 ttacacaggg aaaaatcgga caaactccgc agtatgaaac agtgcgtgct tttggccctg
     1081 atcatttaaa gcaatttgaa attgctttaa tgcttgatgg taaagaactt gcaagagcta
     1141 ttgcaggaag caaaaaagaa gcacagcaaa tggcagcaaa aattgcactt gagaaattag
     1201 gagctttata gtgaatacct ttggtacgag attgaaattt acaagttttg gtgagtctca
     1261 tggtgtggct gttggatgta ttattgatgg aatacctgct ggagttaaat ttgatgaaga
     1321 atttttgcaa aatgagcttg ataaacgcaa aggcggaagt aaatttgcaa caccaagaaa
     1381 agaaagcgat aaagctcagg ttttaagcgg ggtttttgaa ggatatacaa cgggtcatcc
     1441 catagctata gtggttttta atgaaaatgc ccattctaag gattatgata atttaaaaga
     1501 tctatttcgt cctgctcatg cggattttac ttatttttat aaatatggca taagagatca
     1561 taggggtggg ggtagatcaa gtgctaggga aagtgttgct agagtggctg gtggtgcagt
     1621 tgcagcgatg cttttgcgtg aatttggcat ttgtgttcaa agtggtgttt ttggggtagg
     1681 aacttttgta tcaaatttga aagaaaaaga atttgatttt gaatttgcta agaaaagtga
     1741 aattttttgc cttgatccaa aactagaaag tgactttaaa aatgaaattt taaatgctag
     1801 aaattcaaaa gatagtgtag gcgctgctgt ttttacaaaa gttagtggta tgcttatagg
     1861 acttggagaa gttctttatg ataagttaga ctctaaatta gctcatgctt taatgggaat
     1921 taatgctgtt aaagcagttg aaataggcga aggtattaat gcaagcaaaa tgcgcggatc
     1981 gtataataat gatgctttaa aagatggcaa gtttttaagc aatcatagtg gaggaatttt
     2041 aggaggaatt tcaaatggag aaaatcttat tttaaaaact tattttaaac ctactccttc
     2101 tatttttgcc aagcaagaaa gtatagataa atttggcaat aatttggaat ttgaactcaa
     2161 aggtaggcat gatccttgtg taggtgttag aggaagtgtt gtagctagtg ctatggtgcg
     2221 tttagttttg gctgattgtt tgcttttgaa tgcgagtgcg aatttaaaca atttaaaaaa
     2281 tgcttatgga ttaaaataaa aaaagcccat tttcatgggc ttgattgcaa tattttgaaa
     2341 agattcaaat actatatcgc ttgttttgct aaatacttta tactttaact aataaaaaat
     2401 tgattaatat cagccttatt ttcaaaagct atacttgtat aagcttgatt tttaaattta
     2461 agttcatagc tttttcctac ttcgtgttta gtataggtaa gggctatttt taaggcaagt
     2521 tctaagtctt tttctgaaat tttttcatct accaaagagt aagctccgat taaatctcca
     2581 agttctatta cttcatattt aggagttttt aaacctttta aaagagtatt ttcaagttca
     2641 tttctaccta tgatcatttt agctccattg ggtaatctta aatgacgacc atattttaaa
     2701 agttgtgcgt cattaacctg catatctttg tcaaattcta tgaaatctcg aattttttta
     2761 gcaaaactat caagagttag caaacaacct ccacctgggc tttcaaagtc ttctaatcca
     2821 aatttagctg caagttcaag ttgtctttta cgacttcttc cgctaatacc ttcgagtttt
     2881 tctctatcta cccaaccttc tctttcaggt ttggttagag gtaggttttt tgcacacata
     2941 ggacgcaaga ttaaatcttc ttcatcaaga gcaagttttt taacctttgc cattgcatca
     3001 cttctttgac tcatagggcg ttgtcctaaa acttctcctg tgatgataaa acttgcattt
     3061 tcttctttta acatagcaag agcagtttta aacataaaag catgacaatc tatacaagga
     3121 ttaaaatgtt tgccatagcc atattgtgga ttaaaaagca cttcttgaag ataggaattt
     3181 cttacatcta tcatttcaaa atccgcacct accatcgctg cacgcttttt catgatttcg
     3241 cttttatcac ttgtgcttcc aaaacctatg ttgatattta gagctttaac ttctatgcct
     3301 tgtgcagtga tgagtttcat tgcaagcata ctatcaagcc caccgctaaa aagagctaat
     3361 gctttcattg attcctttct gagattataa agttttttaa gattttgtcg attataaaag
     3421 gtataatttt aactaaaaaa tctttaaaat aaggattgga aagtgttaaa aataattttg
     3481 gttttaagca ttttgagttc ttttgctttt gcaaattctt gtgctaacta cgagcaagaa
     3541 cttaaaaagt gtaattcttt aaaaaattca catgagagaa aaatgtgtcg tttaggctta
     3601 tttgcaaaat gtaaaaaagg ataaataatg aaaatcgata cttctgctag tttaacccat
     3661 tctttaacta ataatgttga taaaaaagag cttagcgtat taaaaaaaga agatcaagat
     3721 aaaattcccg tgcaagatct ttcgagttta aatagcgatg gtgttaaggt tgtttttgaa
     3781 aataagcaag gtgaacttat agctttaaat ttaagcgatg aaaattatag tagtttacaa
     3841 aaaaatttcg gttcttatac gaattatgtt gctagaaatg atggtagtat aaggcttaat
     3901 ggcgaagcaa atcaatttgt ttcaaattgg tttgaaagt
//
LOCUS       DARGEM010000125         3829 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.125, whole genome shotgun sequence.
ACCESSION   DARGEM010000125 DARGEM010000000
VERSION     DARGEM010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.125"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            74..708
                     /locus_tag="SFZ78_001568"
                     /pseudo
     CDS             74..708
                     /locus_tag="SFZ78_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            complement(720..1011)
                     /locus_tag="SFZ78_001569"
                     /pseudo
     CDS             complement(720..1011)
                     /locus_tag="SFZ78_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            1066..2568
                     /locus_tag="SFZ78_001570"
     CDS             1066..2568
                     /locus_tag="SFZ78_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8212410.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSETILKNLEKIK"
     gene            2701..>3829
                     /locus_tag="SFZ78_001571"
     CDS             2701..>3829
                     /locus_tag="SFZ78_001571"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8212411.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEI"
BASE COUNT         1408 a          536 c          701 g         1184 t
ORIGIN      
        1 atttttagta gtaaatatat ttataatttc tagattgcat tttttatgta aaaatactta
       61 aaaaggagat attatgaaaa tagcaatttt atgtgcaagc ggtaaagtag gcaaagaaat
      121 cagcaaagaa gctttaaaaa gaaatttaga gccagtatgt tttgtacgca atagctctaa
      181 aatgaatgaa tttttacctc aagctaaaat agtacaaaga gatctttttg aacttgattc
      241 taaagatctg atagattttg atattattat tgacgctttt ggagaatggg aaaatttaag
      301 cttacataaa aagcatatag aatgcttgag tgtaatttta caaggaagta aggctaaatt
      361 atttgttgta gggggtgctg gaagtttgta tatggatgag aatcatacta caagacttat
      421 ggatatgcct gattttccta aagagtattt ggatatagct aagcaagtgc ggaagtattg
      481 gaatttttac gcaatgaaaa aggttttaaa tgggtatatg tgagcccatc tgctattttt
      541 tcaccagatc ttccaaaaag caatcattat aaaatcatag gcgaaaaatt tgaagtgaat
      601 gccaacaatg aaagtaaaat cagctatagt gattatgcta gtgctatgat agacatagtg
      661 cttaattctt gctatgaaaa cacacgcatt ggggtaataa gcctataaat aaagatgcct
      721 tatgctttta aggcatcttt tatttctttt aaatacttat tttgaagttt taaataattt
      781 aaaatctctt cgctagttct taggattttt tcttctttta catttggatt tttagcactt
      841 aaatcataat ttctttcttc aagttctttt ttgctaagca gccaagaatt agcagtgatt
      901 tttcttttct ttgtagcatt ttagaaattc cttaaaatat gcgtattcta aaggcttgtt
      961 tttagtaagc ttgtaaggtg gtataagctc gtagtaatac accttatcat catttgcttt
     1021 taaaatacta tttgttatac ttaataaaat tatttaagga taaaaatggc aaagaaaaaa
     1081 gaaataaaac tagaagatgc gttatggaaa agtgctgata aattacgcaa aaatatcgac
     1141 gcagcagagt ataaacacat agttttagga cttatatttt tacgctacat tagcgatagc
     1201 tttatgcaaa aatacgaaga gttattaaaa gaacaagatg atggagccga cccagaagat
     1261 gcagatgaat acctagctga caatatcttc ttcgttccag aaaaatctcg ctacaactac
     1321 ataagagata acgccaaaaa tcccaaaata ggcaaaatgc tagatgaagc aatggacgag
     1381 atagaaaaac acaacgatac tctaaaagga gttttgccaa aagtctatgc caaagataac
     1441 ttagatagta aatgcctagg cgaacttata gatcttatag gaaatatcgc ctttgacact
     1501 ggtaaaagca ccgatgtttt aggtcatgta tttgagtatt ttttaggtga atttgcccta
     1561 gctgaaggca aacaaggcgg acaattctac actccaaaat gcgtcgtaga gctcctagta
     1621 actatgcttg agccatataa aggcagagtg tttgatcctt gctgtggaag tggcggtatg
     1681 tttgttcaaa gcgaagagtt tgtaaaatct caccaaggca gactagatga catctcaatc
     1741 tatggtcaag agtcaaatca gactacctac aaactcgcca aaatgaacct agccataaga
     1801 aaaatcgaaa gctcacaagt gatatggaac aacgaaggct catttttaaa cgacgctcat
     1861 aaagacttaa aagccgattt tattatagcc aatccaccat ttaacgactc ggactggagc
     1921 ggcgaactgt tagaaaacga tggcagatgg aaatacggcg tcccaccagc aagcaacgcc
     1981 aactacgctt ggatacagca ctttttatat catctatcac caaacggcgg tgtagcggga
     2041 tttgtcctag ctaaaggcgc acttacaagc aacaccacaa atgaagcagc cattagaaaa
     2101 gcacttattg aagatgattt gatagattgt atagtaaatc tacccgcaaa gctgttttta
     2161 aatacaggta ttcctgcatc actttggttt ataagacgcc aaaagctacc aaagacagtc
     2221 aaaaaaacgc tttttataga tgcaagagat ttaggaacta ggataaatag acgcaacaaa
     2281 accctaaaca aagacgatat aaaccaaatc gcaaatattt ataaagcatg gaaaaacggc
     2341 actgattatg aagacataaa aggcttttgt aaaagtgtta gcatagatga gataagagag
     2401 ctttcttatg tgcttacccc agggcgttat gtggggcttg ctgatagtga tgatgagttt
     2461 gattttgata ctagatttaa cgagctttta gcaaagttaa aatcccaaat caaaactgag
     2521 caagagctga gcgaaactat cttaaaaaat ttagagaaga taaaataatg ttttgtgttg
     2581 tgctttcgtc attatctttt aaaccaagct taaacaaagg aaattccgaa tttaaattct
     2641 cgaatttatt tcgtgtattt tttggatttt ttacgcaaat aaattccgag ggattaagat
     2701 atgaataatt ggaaaaaatg taagcttggg gatattgcag agataacaat ggggcaatct
     2761 ccaaaatcag aattttataa ttttgataat ataggtatgc catttttaca aggcaatagg
     2821 acttttggta ggaaatatcc ttattttgat acatattgca ctgaatataa aaaaatagct
     2881 aaaaagggtg agattttatt tagtgtgaga gctcctgtcg gagatattaa tttcgcaaac
     2941 aatgatattt gtatcggtag gggcttatgc tccatgaatg caaaaaatgg tgaaaatgaa
     3001 tttttatatt acttattaca caacttaaga agtgttatta taaataatga gtctggtagt
     3061 gtttttggct cggtaaataa aaatgattta caaacaatag aaattttatt accgctatta
     3121 gaagagcaaa ggcaaattgc tactatctta agtagtattg atgacaagat agaactacta
     3181 cacgagcaaa acaaaaccct agaagaactc gcccaaactc tttttttaaa ttggtttaaa
     3241 gatagagaat ttaatagcac tattagtgat tttatatcta tgcaaaatgg ttttgctttt
     3301 aagagtaaag attttataga ttatggtaac aatggagtaa taaagataaa aaatatttca
     3361 aatggaattg tagatattgt aaatactgat aagataagcc aaaatactat aaatgaagtt
     3421 aataacaaat ttaatataaa ttctggagat attttatttg caatgactgg tgctgagata
     3481 ggtaaaatgg gtatcgttcc aagtacaaat aaaaaattat ggttaaatca gcgagtagga
     3541 atggtaaaag aaaggttttt aggagctagg tttttagcat atatacattt aacttctgaa
     3601 tttggttatg actatgttat caattcagct actggcagtg ctcaagaaaa tataagtgcg
     3661 acagatattg aaaattgtcc atttgttaag cttacgagtg aagagattgt gagttattct
     3721 aaacaattaa atgatttttt tgaaaaaatt atatttaatc taggagaaat tcaaacccta
     3781 gaaaatatgc gtgatatact tatcccaaaa ctcctaaacg gagaaataa
//
LOCUS       DARGEM010000126         3737 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.126, whole genome shotgun sequence.
ACCESSION   DARGEM010000126 DARGEM010000000
VERSION     DARGEM010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.126"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..419
                     /gene="fabZ"
                     /locus_tag="SFZ78_001572"
     CDS             <1..419
                     /gene="fabZ"
                     /locus_tag="SFZ78_001572"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG8212412.1"
                     /translation="EILPHRYPFLLVDKITELKVKEVVRGYKNISISDHVFMGHFPGH
                     PIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE
                     MSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            419..1210
                     /gene="lpxA"
                     /locus_tag="SFZ78_001573"
     CDS             419..1210
                     /gene="lpxA"
                     /locus_tag="SFZ78_001573"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG8212413.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVVEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            1203..2426
                     /gene="clpX"
                     /locus_tag="SFZ78_001574"
     CDS             1203..2426
                     /gene="clpX"
                     /locus_tag="SFZ78_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG8212414.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            2437..3477
                     /locus_tag="SFZ78_001575"
     CDS             2437..3477
                     /locus_tag="SFZ78_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG8212415.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVKESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            3467..>3737
                     /locus_tag="SFZ78_001576"
     CDS             3467..>3737
                     /locus_tag="SFZ78_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8212416.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILE"
BASE COUNT         1328 a          420 c          814 g         1175 t
ORIGIN      
        1 aagaaatttt accacaccgt tatccttttt tactagtaga taaaattaca gaattaaaag
       61 ttaaagaagt ggtgcgagga tataaaaaca tcagtataag tgatcatgtt tttatgggac
      121 attttccagg gcatcctatt tatcctggag ttttgatttt agaaggtatg gctcaaacag
      181 gtggagtttt agcttttgaa agtatggaag ataaagtgga tccaaaaagt aaagtagttt
      241 atttcacagg catagatgga gcaaaattta gaaatcctgt gcgtcctgga gataggcttg
      301 attatgaaat gagcgtggtt aaaaatcgtg gtaatatgtg gatttttaaa gggcaagctt
      361 ttgtagatgg aaatttagtt gcagaggccg agcttaaagc tatgatagtg gataaataat
      421 gaaaaaaatt catccaagtg cggtgattga agagggtgca caacttggtg acgatgttgt
      481 agtagaagct tatgcttatg taagcaaaga tgctaaaata ggtaataatg ttgtcatcaa
      541 acaaggtgct cgaattcttt cagatacaac tataggtgat cattctcgtg tattttctta
      601 tgctatagta ggcgatattc ctcaggacat atcttataaa gaagagcaaa aaagcggtgt
      661 tgttataggg aaaaatgcaa ctattagaga atttgcaacg ataaattcag gtacagctaa
      721 aggagatggt tttactcgta taggcgataa tgcttttatt atggcttatt gtcatattgc
      781 tcatgattgt cttttaggta ataatattat tttagctaat aatgcaactt tggcaggaca
      841 tgtagagctt ggagatttta cggttgtagg cgggcttaca cctattcatc aatttgtcaa
      901 agtaggtgag ggttgtatga tagcaggagc aagtgcactt tctcaggata tagtaccgtt
      961 ttgtttagca gaaggaaatc gtgcaagtat tagaagttta aatttagtag gtactcgtcg
     1021 tcgttttgat aaagatgaag tagatagact tagtagagct tttaaaactt tatttagaca
     1081 aggagattta aaagaaaatg ctaaaaattt gcttgaaaat caagaaagtg aaaatgttaa
     1141 aaaaatgtgc cattttatat tagaaacaaa gcgtggaatt cctgtctata ggggtaaaaa
     1201 taatgcctag aaaatgtagt ttttgcaatg aagtggagaa tccacaaaga agaattttag
     1261 caaatgaaaa tgatgatgct tttatttgtg aatattgcgt tgaaggtgct tatagtatta
     1321 tttatggaga agaaaaagaa tttaaagaac ctaaacaaag ttataataca gaatttaaag
     1381 atatcactcc aaaagaatta aaagcttatt tagatcgtta tgtcatagga caagatagag
     1441 ctaaaaaagt ttttagtgtt ggagtataca atcattataa aagacttttt aaagctgaac
     1501 ttcaagatga tgatacagag ctttttaagt caaatatttt acttgttggg ccaacaggaa
     1561 gtggaaaaac tttattggcg caaactttag ctaaattttt agatgtacct atagcaattt
     1621 gtgatgcaac ttctttaact gaagcaggat atgtaggtga ggatgtagaa aatattttaa
     1681 cacgtctttt acaagctgca gatggagatg tgcaaagagc tcaaaaaggt atagttttta
     1741 ttgatgagat tgataaaatt gccagaatga gtgaaaatcg ttctattact cgtgatgtaa
     1801 gtggagaggg tgtgcaacaa gctttactta agattatcga aggaagtttg gtaaatattc
     1861 caccaaaggg ggggagaaaa catccaaatc aagagtttat acaaattgac acttcaaata
     1921 ttttatttgt ttgtggtgga gcttttgatg gtttggaaac tatcttaaaa agaaaacttg
     1981 gagataaagt tgtaggtttt tttgatgatg caaaagaaga aaataaagct ttacttgaga
     2041 aaattgaacc tgatgatttg gtgcattttg gtttgattcc tgagcttata ggtcgtttgc
     2101 atgtgattgc atctttaaat gagcttaatg aagaagatat ggtaagaatt ttaactgaac
     2161 ctaaaaatgc cattattaag caatatcaaa agctttttgc tattgatggg gtaaatttaa
     2221 aatttgaaga agatgctcta agagctatcg cacagcttgc attggagaga aaaacagggg
     2281 ctagggggct tagaagtatt atagaagaaa tgatggtaga tttaatgttt gagttaccag
     2341 agtataaaaa ctatgatatt gtaataacca aagaagttgt taaagacaat gcaaaggcat
     2401 tattaataaa aagaaaaata agttaaaagg atagaaatga tattagatca acttatagga
     2461 tttttttcta gtgatatggg gattgattta ggaacagcta atacgctagt tttggtaaaa
     2521 gataagggta tagtgataaa cgagccttct gttgtggcag ttgaaagaga aaggtatggt
     2581 tccaaagcaa aaattttagc cgtaggtaaa gaagctaaag atatggtggg aaaaactcca
     2641 ggtaacatcg aagctattcg tcctatgaaa gatggcgtga ttgcagattt tgatatgact
     2701 gaaaaaatga tccgctattt tatagaaaaa acacatcgta gaaaaagttt tttacgccct
     2761 agaattatta tttctgttcc ttatggttta actcaagtag aaagaaaagc ggtaaaagaa
     2821 agtgctttaa gtgcaggtgc aagagaggta tttttgatcg aagagcctat ggcagcagct
     2881 attggtgcaa gtttacctat acaagaacct aaaggaaatt tggtagtaga tatagggggt
     2941 ggaactactg agatcggagt gatttctttg ggtggacttg tgatttcaaa gtctattcgt
     3001 acagctggag ataagcttga tatgagtata gttaattatg taaaagaaaa atacaatctt
     3061 atcataggtg aaagaacagg cgaagagatc aaaatcacca taggttcagc aatacaactt
     3121 ccaaaagaac tttctatggt ggtaaaagga cgcgatcaag taagtggact tttaagtcgt
     3181 attgaactta caagtgaaga tgtaagagaa gcaatgcgtg agtatttaaa agaaattgct
     3241 gatgctttaa aaatggttct tgaaatgatg ccgcctgatt tagcaagtga tatagtagaa
     3301 aatggtgtag ttttaacagg tggtggagca ttgattcgtg gttttgataa atacttaagt
     3361 gaaattgtac gtttgccagt ttatatcgca gatgaaccgc ttttagctgt agcaaaagga
     3421 acgggtaaag ctttagagga aatttcatta ttgcaacaat taaccaatga agaataagat
     3481 tttttatgtt cttgtcttag cctttttggt ttttatatct ttttattatg gaggacttat
     3541 caagcaaaat gttctccgtg ttaatgattt tgttataggt aatttttata atattaaaga
     3601 ttatttggga aaaaaaattt cagaacactt taatcaagca aatcaaattc agcaactaaa
     3661 agctagaaat aaagaattag aagatattgc tgtaaaggta actagttttg caaatcaatt
     3721 aaatcgtatt ttagagg
//
LOCUS       DARGEM010000127         3622 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.127, whole genome shotgun sequence.
ACCESSION   DARGEM010000127 DARGEM010000000
VERSION     DARGEM010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.127"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            52..3480
                     /locus_tag="SFZ78_001577"
     CDS             52..3480
                     /locus_tag="SFZ78_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8212417.1"
                     /translation="MNKTALTKTYTKDIQNSCLNSKKIVLSLAAISFSASCTHATLTP
                     EIETYEETNRHAKARSGFRSKSSNNNKTISSLQNSTQTVSGTGNTLVIESGGTITISN
                     GGQQAVNFQPNSSTSTFLNKGTLIGGNNTASVQLGANTNNGVTIETFDNQGIIGNGSS
                     KFGVTVWGGDKDSSKSIISNFSNSGTIHSNAGESIYFGNAKISSFANSGTIKSKQGTG
                     VNISQGTSIEKFNNTGAIEGKRMGVNVRSTINTFVNDGLIAATNDGIQINANVKTLIN
                     KGTIKGDAISIRSLGGTIETLTNEGIVDGKSAGIYMSGGRVKTLINKGTINHTDSSVG
                     WGAGIKLEKGSTIENIINTGTINSSGFGIAVTHGKFGTLTIKDGGKVYGKYEGIGVGQ
                     WQTLGDLYIDGSSSNGTVSGIYSEERGISLDANSRTQKIELKNGGIIKGNIHGIRLDN
                     GASLSGEMILSGKGSRVEGGRGAGILNRSGKIEGSIKVEDGATVTATSNLAIVNYNSG
                     SITGGITVSGENTKLQGNIINTGNASIGSDIKIEGGAKVEGGLVNQGNGSISGSVQVS
                     GGSSIDSITNEGNGAISGSITVDKDSKLDSITNTSTSSTGISGSITNNSDNKLEISNS
                     GNIGGKIESTGSADMVISNSNGGTISGGISSSGSGSTSISNSQGSTINNGITVSGSAQ
                     VEISNQGSVGKDENGNTVTNNGSGSVGIKDWLVSTDKNTGKLNTVVIGGSGAFNVKVE
                     NITVDQSNVDLEELNDINNIISGVNQNNIGNIGTNGSGEISLSFDPITGKLTTDFNLN
                     ASISGATFRSLISTTSRRSTFIDNVMGNSMQSFALASSSKSQSIAMSEKGNLYADASD
                     YIKSDLNNGSYGSNKEHSLFILPYTSSQNVELSLNEESKGHTKGTIIGYSTLKDSGIY
                     GVYAGYEDTKMGSTYFDINNRTYYAGLKYFNTLFTTEKGQEVYIKAQGKAALIKNDLT
                     EKIGNNEAKAEPNSYAYGVNTALGMNFISNKDIFSPEIGLAYEGGYTEAFSMKDTIGQ
                     ATVKGGERTYANYLNLFSTKTSLTWFRDWLPNLKTSVELGAKFNINPKVEAEARFGNI
                     KVSDEFDLPRVQKFVSTSFIVPVNEAFYFSLNYNGMFDKDGNTHTGFAQFNYLW"
BASE COUNT         1330 a          475 c          703 g         1114 t
ORIGIN      
        1 atttttaaat ataaacaaga aaatataaat ataaaaggaa agggaatatt tatgaataaa
       61 actgcattaa ctaaaacata cacaaaagat atacaaaatt cctgtttaaa ttctaaaaag
      121 atagttttat ctttagctgc tatttctttt tcggcaagtt gtactcatgc tacacttact
      181 cctgaaatag aaacttacga agagacaaat agacatgcta aagctaggtc aggttttcgt
      241 tctaaaagtt cgaataataa taagactata agtagtttac aaaattcaac tcaaactgta
      301 agtggcaccg gcaatactct agttatagaa agtggtggaa ctattactat ttctaatggt
      361 gggcaacaag cagtaaactt tcaaccaaat tcttcaactt ctaccttttt aaataaagga
      421 actcttatag gtggaaataa tactgctagt gttcaactag gagcaaatac aaataacggt
      481 gttaccatag aaacctttga taatcaaggt atcataggta atggttcttc taaatttgga
      541 gtaacagttt ggggggggga taaagatagc tctaaatcta taatcagtaa ttttagtaat
      601 agtggaacta ttcactctaa tgctggtgaa agtatttatt ttggtaacgc caaaatatca
      661 agttttgcta atagtgggac tattaagagt aaacaaggca caggagtaaa tatatctcaa
      721 ggaacaagta tagagaaatt taacaatacc ggagctattg aaggcaagag aatgggtgta
      781 aatgttcgtt caacaataaa taccttcgtc aatgacggtt taattgctgc aacgaacgat
      841 ggaatacaga taaatgctaa tgtaaaaaca ttaataaata agggaaccat aaaaggagat
      901 gctatatcta taagatcatt aggtggaact atagaaacat tgaccaatga aggcattgtg
      961 gatggtaaaa gtgctggtat ttacatgagc ggaggtcgtg ttaaaactct tataaataaa
     1021 ggtaccatta atcatacaga cagttcggta ggttggggtg ctggtataaa actcgaaaaa
     1081 ggtagtacca tagaaaatat catcaacaca ggaactatca attctagtgg ttttggaata
     1141 gctgtaactc atggtaaatt tggaacactt accataaaag atggaggtaa ggtttatgga
     1201 aaatacgagg gaataggagt gggtcaatgg caaactctag gagatttata tatagatgga
     1261 agttcaagta atggcacagt aagtggaatt tatagtgagg aacgtggaat ttcattagat
     1321 gctaactcac gaactcaaaa aatagaactt aaaaatggcg gcattataaa aggtaatatc
     1381 catggtataa gattggataa tggtgcctct ttaagtggag aaatgatttt atctggcaaa
     1441 ggttctaggg tagaaggtgg aagaggtgct ggtatattga atcgaagtgg aaaaatagaa
     1501 ggctctataa aagtagaaga tggagcaact gttacggcta cttcgaatct agccatagtt
     1561 aactataact caggaagtat aacaggtggt attactgtta gtggggaaaa tactaaactt
     1621 caaggaaata taatcaatac aggtaatgct tctataggta gtgatatcaa gatagaaggt
     1681 ggagctaagg tagaaggtgg tcttgttaat caaggtaatg gaagtatctc aggaagtgtt
     1741 caagtaagtg gtggtagtag tattgattcc attaccaatg agggtaatgg agctatttct
     1801 ggttcaatta ctgtagataa agatagtaaa cttgattcta tcactaacac ttctacatca
     1861 tctacaggta taagtggttc tattactaac aatagtgata ataaacttga aatttctaat
     1921 tcaggtaata tcggtggtaa gattgaaagt acaggtagtg ctgatatggt gattagcaat
     1981 agtaatggtg gaactattag tggcggtatt agttcttcag gaagtggaag cactagtatt
     2041 tccaattcac aaggctcaac cataaataac ggcatcactg tttcaggatc agcacaagtt
     2101 gaaatctcca atcaaggctc agtaggtaaa gatgaaaatg gtaatacagt aactaacaat
     2161 ggtagtggta gtgttggaat caaagattgg cttgtttcta cagataaaaa cacaggtaaa
     2221 ttaaacactg tggttatagg tggaagtgga gcttttaatg taaaagtaga aaacatcacc
     2281 gtagatcaaa gcaatgttga tcttgaagag ctaaacgata taaacaacat catctcaggt
     2341 gttaatcaaa acaatattgg caatatagga accaatggaa gtggagaaat atctttaagc
     2401 tttgatccaa taacaggaaa gcttactaca gattttaatc ttaatgcttc catatcaggt
     2461 gcaaccttta gatctttaat ctctactact tcaagaagat caacctttat agataatgtt
     2521 atgggtaatt ctatgcaaag ctttgcttta gcttcttcaa gtaaatctca aagcatcgct
     2581 atgtctgaaa agggtaattt atatgcagat gcaagtgatt atataaagag tgatttaaat
     2641 aatggaagct atggttctaa taaagaacat tctttattca tccttcctta tacttcttca
     2701 cagaatgttg aactttcttt aaatgaagaa agtaaaggac acactaaagg aaccattata
     2761 ggttattcta ctttaaaaga cagtggaata tatggtgtgt atgcaggtta tgaagataca
     2821 aaaatgggtt caacttattt tgatattaat aatagaacct attatgcagg tttaaaatac
     2881 tttaatacct tatttactac agaaaaaggt caagaagttt atatcaaagc tcaaggtaaa
     2941 gctgctttga ttaaaaatga tttaactgaa aaaataggaa ataatgaagc taaagctgaa
     3001 cctaattctt atgcttatgg agtcaataca gccttaggta tgaattttat ttctaataaa
     3061 gatatattct ctcctgaaat aggtcttgct tatgaaggag gttatactga agctttttct
     3121 atgaaagaca ccataggaca agcaacagtt aaaggtggag aaagaaccta tgcaaactat
     3181 ttaaatcttt tctctactaa aacaagtctt acttggttta gagattggtt gcctaattta
     3241 aaaacttcag tagaacttgg agctaagttt aatatcaatc ctaaagtaga agctgaggct
     3301 agatttggta atataaaagt aagtgatgag tttgatttac caagagtaca aaaatttgta
     3361 agcacttctt ttatcgttcc tgttaatgaa gctttctatt ttagtttaaa ctataatgga
     3421 atgtttgata aagatggcaa tacccataca ggatttgctc agtttaatta tctttggtaa
     3481 tcttataaaa gataatactt agtttaatta gtttactctc ctacttgtta aaaatttcat
     3541 cctgataatt ttaaaattat taggatggat gtttttaagg ttattaaact ctttttagat
     3601 tgcaatcatt cttttaaagt at
//
LOCUS       DARGEM010000128         3561 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.128, whole genome shotgun sequence.
ACCESSION   DARGEM010000128 DARGEM010000000
VERSION     DARGEM010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.128"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..74)
                     /locus_tag="SFZ78_001578"
     CDS             complement(<1..74)
                     /locus_tag="SFZ78_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M15 family protein"
                     /protein_id="HEG8212418.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNV"
     gene            complement(64..429)
                     /locus_tag="SFZ78_001579"
     CDS             complement(64..429)
                     /locus_tag="SFZ78_001579"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212419.1"
                     /translation="MTLDSVSKDLLKHFNAIGIANYEDVKQGGLYLMLESLTSINHHK
                     DSVNFSLIFSSHTFNKDKDSLIKKIDELRLKLFEFDTSKKLLSSIESGFISSSLFAYR
                     LKFNIEIFSKPEGEEENEK"
     gene            complement(426..779)
                     /locus_tag="SFZ78_001580"
     CDS             complement(426..779)
                     /locus_tag="SFZ78_001580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212420.1"
                     /translation="MIALLSPPKMLALTLKELALMKRAQQNLANIDEITREVVAKAAK
                     DADDICKNKDIADFIWEDFAYIRIKIYLKIVLDDEDKILLDNALKRIENAPLIDKEGN
                     LSSLRLKIMQRKDRF"
     gene            complement(776..1045)
                     /locus_tag="SFZ78_001581"
     CDS             complement(776..1045)
                     /locus_tag="SFZ78_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212421.1"
                     /translation="MDNIVSANKLRNQNAILNPKENDDQKALFLKEKQEFEKEKALFL
                     KEKQEFEKEKALFLKEKQKTLEENEETIINESLKNKETKKGKQDK"
     gene            complement(1045..1932)
                     /locus_tag="SFZ78_001582"
     CDS             complement(1045..1932)
                     /locus_tag="SFZ78_001582"
                     /inference="COORDINATES: protein motif:HMM:NF021628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HEG8212422.1"
                     /translation="MAFTELSTAYMQAVNKGFSTIFNNALEGGNKDYEKFAMVTNANS
                     LVVEYQFLASLPKMREWIGDRQFSKLKGQGYTITKKDWESSIEVPRDVITYDNLGIIR
                     PQIEMLAYEVQNHYNDLIFTLLEQNQTCFDGKAFFANDHDIGGVSFSNLGDKKLSAAS
                     LMEARKNMRALTNESGRTLNINPALLVVPLSLEAKALEIVNSDLINGSSNVFKGVVEV
                     FTSPNLSDQDAWYLIDNTKPIKPLILQINKGAEFVAKDNPTDEAAFMRKTFQYGIDSE
                     DNAGYGLWQLAYKSSGKAE"
     gene            complement(1932..2972)
                     /locus_tag="SFZ78_001583"
     CDS             complement(1932..2972)
                     /locus_tag="SFZ78_001583"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212423.1"
                     /translation="MRDLLLELNTKLTNEKVKISPIGIAKGLDGRVFKIDGEKLINNI
                     QKNGLDIALNLNHQGGEAYGWFDRNSLELREDGIYASLELTPKGKELVENKAFRYLSP
                     EYYVDDDKNVIHLDAMGLVNQPNLLNRALNKARSLINSTKNSKLSTPRSGTEAKKGKV
                     EHGLQVGAGSETPTRKDDFSSSAKLKKERNTMNEEELEELQKLAEQVEEQAENVEESV
                     QETEDCVGEGENPDSELETLRQENEELKAQIAELKAKLETALNKNEETEIELNKKRLD
                     SLLQNGLILPNRYQKALNMKGRVLEDYLDVCKKEANIVLGKKELNFTNKRKELNAYEA
                     KVFKQLGIKGGK"
     gene            3103..>3561
                     /locus_tag="SFZ78_001584"
     CDS             3103..>3561
                     /locus_tag="SFZ78_001584"
                     /inference="COORDINATES: protein motif:HMM:NF020401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEG8212424.1"
                     /translation="MSKKELAKSLFIQGKSIKDICVLTGLSRQGIYCMKKDDFSKGID
                     WESLKLAALRDEKDLENKEAMFLNALIGEFERFLESASKNELDIDTLEALNKYAKTYW
                     TIKAPQKVDVKALNLQTCKKTIDSIIELASTNEAVCEWLSDNSDLIISKVL"
BASE COUNT         1075 a          613 c          482 g         1391 t
ORIGIN      
        1 acattttgag gcaattcaca tttgccgcat ttacatttaa attcgctttc tttaaaataa
       61 gggttatttt tcattttctt cttctccttc tggttttgaa aaaatttcta tattaaattt
      121 aagcctataa gcaaataaag aactgcttat aaaaccactt tcgatactgc ttaaaagctt
      181 tttgcttgta tcaaattcaa aaagttttag tcttaattca tctatttttt taatcaaaga
      241 atctttatct ttattaaaag tatgagaact aaaaatcaat gaaaaattca cactatcttt
      301 atgatgatta atacttgtta ggctttcaag cattagataa agtccgcctt gtttgacatc
      361 ttcgtaattt gctatgccta tcgcattaaa atgctttaat aaatctttgc taacactatc
      421 taaagtcaaa acctgtcctt tctttgcata attttaagtc ttaaagagct taaatttcct
      481 tctttatcaa tcaaaggtgc attttcaatt cgttttaaag cattatctag aaggatttta
      541 tcttcatcat ctaagacgat tttaagataa atttttatgc gaatgtatgc aaaatcctcc
      601 caaataaaat cagcaatatc tttatttttg caaatatcat ctgcatcttt tgctgcttta
      661 gctactactt ctcttgtaat ttcatcgata tttgctaagt tttgttgtgc tcttttcatc
      721 agtgctaact cttttaaagt aagagctagc attttaggag gagaaagcaa ggctatcatt
      781 tatcttgttt tccttttttt gtttctttgt tttttaaaga ctcatttatt atagtttctt
      841 cattttcttc taaagtcttt tgcttttcct ttaaaaacaa agctttttct ttttcaaact
      901 cttgcttttc ctttaaaaac aaagcttttt ctttttcaaa ctcttgcttt tcctttaaaa
      961 acaaagcttt ttgatcgtca ttttcttttg gatttaaaat tgcattttga tttctaagtt
     1021 tattagctga aactatattg tccattattc tgcctttccg cttgatttat aagctaattg
     1081 ccacagtcca taacctgcat tgtcttcgct atcgattcca tattggaaag tcttacgcat
     1141 aaaagcagct tcatcagtag gattatcttt agcaacaaac tcagctcctt tgttgatttg
     1201 caaaattaaa ggtttgattg gtttggtatt gtcaattaaa taccaagcgt cttgatcgct
     1261 taaatttgga cttgtaaata cttctacaac gcctttaaaa acattgcttg aaccattgat
     1321 taaatcgcta tttacaatct cgagtgcttt tgcttccaag cttaatggta caaccaaaag
     1381 agcaggattg atatttaaag tgcgtccgct ttcattagtc agtgcacgca tgttttttct
     1441 agcctccata agacttgcag cacttaattt tttatctcca agatttgaaa aactcacacc
     1501 accaatatcg tgatcatttg caaaaaatgc ttttccatca aagcaagttt gattttgctc
     1561 taaaagtgta aaaataagat cattataatg attttgtact tcgtaagcta acatttcaat
     1621 ttgtggtctt attattccta aattatcgta agttattaca tctcgtggta cttcaatgga
     1681 actttcccaa tcttttttag tgatagtata accttgaccc ttaagtttgc taaattgacg
     1741 atcgcctatc cattcacgca tttttggtaa agatgctaaa aattgatatt ctacaaccaa
     1801 agaatttgca ttggttacca ttgcaaattt ttcataatct ttatttccac cttcaagagc
     1861 attattaaaa atggttgaaa atcccttatt cactgcttgc atgtaagcag tgcttaattc
     1921 tgtaaaagcc attatttgcc tcctttgatt ccaagttgtt taaaaacttt tgcctcataa
     1981 gcattaagtt cttttctttt gtttgtaaaa ttaagttctt ttttacctaa aacaatattt
     2041 gcttcttttt tgcaaacatc aagataatct tctaaaaccc tgcctttcat attaagagct
     2101 ttttgatagc gatttggtaa aatgagtcca ttttgcaaaa gagaatcaag gcgtttttta
     2161 ttaagctcaa tctctgtttc ttcatttttg tttaaagcag tttcaagttt tgctttaagt
     2221 tctgcaattt gtgcttttaa ctcttcattt tcttgtctta aagtttctaa ctcgctgtct
     2281 ggattttcac cttcgcctac acaatcttct gtctcttgta cggattcttc tacattttca
     2341 gcttgttctt ctacttgctc ggctaatttt tgtaattctt ctaattcttc ttcgttcatt
     2401 gtattccttt ctttttttaa tttcgcggat gaactaaagt catccttgcg agtgggagtt
     2461 tcactccctg cacccacctg aagaccatgc tcgaccttgc cttttttagc ttctgtccca
     2521 cttcgtgggg tgcttaactt tgaatttttg gtgctattga ttaatgacct agctttattt
     2581 aaagccctgt ttaaaagatt gggctgattt acaagtccca tggcgtctaa atgaataaca
     2641 tttttatcat catccacata atattcaggg cttaaatatc taaaagcctt attttcaaca
     2701 agttctttcc ctttgggcgt taactcaaga cttgcataaa tgccatcttc tcttaactct
     2761 aatgaatttc tatcaaacca gccataagct tctcctcctt gatgattaag atttaacgct
     2821 atatcaagtc catttttttg tatattattg attaattttt ccccatctat cttaaatact
     2881 ctcccatcaa gtcctttggc tattccaata ggagaaattt ttactttttc atttgtgagt
     2941 tttgtattaa gctctaataa taaatcacgc atcaaaagcc tttatttttt cgcataatca
     3001 taagataaaa aatgctttta aaccacctat ttaaagtata tatagactga ttttaaaaaa
     3061 ataaaaaaat ataatttcaa gcaataattc taaaggaaaa atatgagcaa aaaagaactt
     3121 gctaaaagtc ttttcataca aggaaaaagt atcaaagata tatgtgtttt aacaggtctt
     3181 agcagacagg gtatatactg tatgaaaaaa gatgatttta gcaagggtat tgattgggag
     3241 agtttaaaat tagccgcttt aagagatgaa aaagatttag aaaataaaga agctatgttt
     3301 ttaaacgcat tgattggtga gtttgagagg tttttagaaa gcgctagtaa aaatgagctt
     3361 gatattgata ctttagaagc tttaaataaa tacgctaaaa cttattggac tattaaagct
     3421 ccacaaaaag tagatgttaa ggctttaaat ttacaaactt gtaaaaaaac tattgattct
     3481 attattgagt tagcaagcac caatgaagca gtttgtgaat ggcttagtga taatagtgat
     3541 ttaattattt caaaggtttt a
//
LOCUS       DARGEM010000129         3426 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.129, whole genome shotgun sequence.
ACCESSION   DARGEM010000129 DARGEM010000000
VERSION     DARGEM010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.129"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(9..95)
                     /locus_tag="SFZ78_001585"
     tRNA            complement(9..95)
                     /locus_tag="SFZ78_001585"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(59..61),aa:Leu,seq:caa)
     gene            276..2528
                     /gene="flgL"
                     /locus_tag="SFZ78_001586"
     CDS             276..2528
                     /gene="flgL"
                     /locus_tag="SFZ78_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG8212425.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2638..>3426
                     /locus_tag="SFZ78_001587"
     CDS             2638..>3426
                     /locus_tag="SFZ78_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG8212426.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKNYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKIEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKRETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEV"
BASE COUNT         1280 a          483 c          570 g         1093 t
ORIGIN      
        1 aaaataagtg gtgcccgagg tcggactcga accgacacaa ggttgccctt accagatttt
       61 gagtctggcg cgtctaccag tttcaccact cgggctcatt tttaagattt aaagctaaaa
      121 ttatactttt ttaggctaaa aaatacttta aaaataaaaa gtattttcaa aaagacaata
      181 taaaattata taatttaatt ttttggaaca gttattgctt ttgtttatta gcaatgtttg
      241 aaaagatttt aactttaata ctttagagga aaaaaatgag aattacaaat aaacttaact
      301 tcacaaatag tgtgaataat tctatgggcg gtcaaagtgc tttatatcag atatctcaac
      361 aacttgcttc aggtttgaaa atacaaaatt catatgaaga tgcaagcact tatatagata
      421 atacgcgtct tgaatatgaa attaaaacat tagaacaagt aaaagaatca acaagtagag
      481 ctcaagaaat gactcaaaat agtatgaaag ctttacaaga tatggttaaa cttcttgaag
      541 attttaaagt taaagtaacc caagctgcaa gcgatagcaa ttctcaaacc tcaagagaag
      601 ctatagcaaa agaactagaa cgtataaaag aaagcatagt tcagcttgca aataccagtg
      661 ttaatggtca gtatcttttt gcaggttctc aagttgcaaa caaacctttt gattctaatg
      721 gaaattatta tggagataaa aataatatta atgtagtaac tggagctgga actgaaagcc
      781 catacaatat accaggttgg gatttatttt ttaaagcaga tggagactat aaaaaacaaa
      841 taagcactaa tgttagtttt acagataatc gttgggattt aaataaagac cctgataaaa
      901 ctaaatatct cacaggagat tctaaatggc aacaacttat cggacaaggt tatgtaaaag
      961 ataatagctt agatgctgac aaagactttg agtatgatga tagcaaacta gattttcctc
     1021 caacaactct ttatgttcaa ggaaccaagc ctgatggaac aagttttaaa agtgctgtac
     1081 tcgtcaaacc tgaagatact ttagaagatg taatggaaaa tattggagct ctttatggta
     1141 atactccaaa taataaagta gtagaagtaa gtatgaatga tagtggtcaa attcaaatta
     1201 cagatctaaa gcaaggtaat aataaactcg attttcatgc tgtagctttc acaccacaag
     1261 ctgataccaa agatgaactt aaaaatatta ttgaagctgc taatcaagag ggtatttcaa
     1321 tgaatgaagt tacaaatagg gttatgcaag ctgctacggc tgctcctagt aatggagata
     1381 taacaaaatt aaacaaccct gtaactgtaa caatcaacaa tcaacaattc acaatcgatt
     1441 taaaacaaac tgattttatc aaaagtaaaa tgacagatac agatggaaat gctgctaatg
     1501 gagctgatta cgataatgtg tattttgaaa aaaatggcaa tactgtttat ggtaatgttt
     1561 ctcaagttat caaaggaagc aatgcttatg ccactgattc aaccaaactt agcgaggtaa
     1621 tggcaggaga tagcctaaat ggtactactt taaatttaaa agtcaattcc aaaggtggaa
     1681 attcttacga tgttactata aatttacaaa cttcaactgt aagctatcct gatcctaata
     1741 atccaggtca aaccataagc tttcctatta tgcatactaa tcctgcaact ggaaatagtg
     1801 gggttgttac aggatcaaat gatattactt atggtcaaat taatgatatt ataggtatgt
     1861 ttgctgcaga taaaattcct acaacaacca tacaagccaa taatggtcaa attaataatg
     1921 cagattatac ccaaatacaa caactcatga aagattcaca agctactgtt gatgtaagta
     1981 tggattataa aggtcgtatt agtgttactg ataaactttc ttcaggcact aatatagaaa
     2041 tttctcttag tgattctcaa agtggccaat ttccagcacc tccttttacc acaacttcta
     2101 ctgtacaaaa tggtccaaat tttagtttta gcgcgaataa ttctttaact atagatgagc
     2161 caaatgtgga tattattaaa gatttagatt caatgattga tgctgtttta aaaggcaata
     2221 tgagagcaga ctccgaaagt gaaaacccta gaaatacagg tatgcaagga gctttagaaa
     2281 gacttgatca tttagcagat catgttagca agcttaatac aactatggga gcatatcata
     2341 atactatcga aggtgttaat acacgcacat cctttttaag cgttaatgtc caaagtataa
     2401 aatcaaatgt gattgatgta gattatggtg aggcaatgat gaatttaatg caagttcaac
     2461 ttgcatatca agcttctctt aaagctagta caacaatttc tcaacttagc ttattaaatt
     2521 atatgtaaaa ttttttatgg tataatttgg ctttgatttt attttcaagg aaagaatatt
     2581 aaaaaagaag ccatttttac cagctccacg cttgttattt tttatctttg tctttgtatg
     2641 ctagcacctg gcatgggaga atgggtttac aaggctaatt tatttttatt tggagaattt
     2701 gggtattatt atccattttc tttgcttata ttaaattatc tctattataa aaaaaattat
     2761 aaaatagaaa attttaagcg tagggagctt tttggttttt ctttggcctt tttttctacc
     2821 ttgcttttat tttctgtctt ttatagagag tttgggtata ttttagaaat tgtatatgga
     2881 tttttttcta taatcttagg gcgtacaggg agtggaattt ttgctctttt acttctacta
     2941 ttttctttgg ttttattgtt tccaaaattt gcaaaagaaa ttttaaaaat agaattagat
     3001 tttacttatt tattaaaaat agagcaagct tttaaatctt tacttatgcg tgtatttggt
     3061 ggagaaaacg agaaagaaga tgtaggtaaa tcagaaccta tagctccaaa attaaatatt
     3121 ttgcaagata gtatttatgg aaatttacaa ataaacaaaa aaagggaaac caataactta
     3181 gaacagataa ttaaagatag caatatcaat gcaagtaaaa attcaattac cacggccaag
     3241 gaaaattttg aaaaactaaa aaatcaaatt ttagatgaaa ccatagagat tgataaacaa
     3301 agtttaaaag aatcaagaag ttttgttcat gagcattctc aacaagtgcg aaatttcgca
     3361 caaaaggcta gtaaaatgag cattagtctt gatgaagatt ttaattttat ttcagaagaa
     3421 gaggta
//
LOCUS       DARGEM010000130         3420 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.130, whole genome shotgun sequence.
ACCESSION   DARGEM010000130 DARGEM010000000
VERSION     DARGEM010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3420
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.130"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..655
                     /locus_tag="SFZ78_001588"
     CDS             <1..655
                     /locus_tag="SFZ78_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212427.1"
                     /translation="NCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKIL
                     SDVLTDAGYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRI
                     GAYDYEYDLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVFDLKNATNLIIDANDLDNWF
                     PKIFFLDKNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            667..1869
                     /locus_tag="SFZ78_001589"
     CDS             667..1869
                     /locus_tag="SFZ78_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG8212428.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDNYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            1873..3120
                     /locus_tag="SFZ78_001590"
     CDS             1873..3120
                     /locus_tag="SFZ78_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG8212429.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            3120..>3420
                     /locus_tag="SFZ78_001591"
     CDS             3120..>3420
                     /locus_tag="SFZ78_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG8212430.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIK"
BASE COUNT         1280 a          429 c          616 g         1095 t
ORIGIN      
        1 aaattgtgat attgcaaaaa tatctcaaat attaaaaacc aattctttaa ttgccttaac
       61 actatcaaat cctcaaagtc taaaactaaa ttttaaagca aaagctgatg aagttatgtt
      121 ttttaaaatt ttatccgatg ttttaacaga tgccggatat atatatttta tccctacaga
      181 tttgatttta agagaaggaa atattgacta taccatacaa gtagaatctc aatatgtttt
      241 agatcctgga acgctttaca atctcttaaa agaaaattct gtctatatag ataatattaa
      301 gcgcattgga gcatatgact atgaatatga tttaaatttt tccaatgctg tattaaaaac
      361 caatacaaat gttaatttaa atactccaaa atcattagaa aaacccctta aagactatgt
      421 gtttgattta aaaaatgcta caaatttgat tattgatgca aatgatttag acaattggtt
      481 tcctaaaatc ttctttttag ataaaaatct gaatctaatt aaagcagtaa aaagcgaaaa
      541 taaaaataat catttttcag aacttattcc aaatggtgct atatatgcta ttgtaagcga
      601 tatgtatagt ttagataata tacgcagggg tttaaaaatc acacttaaaa aataaaggat
      661 taagaaatgt ttgatgaaat ccgttttaat accatagaaa gacttccaaa ttatgttttc
      721 gcagaagtaa atgcgataaa aatggcagca agacgtgctg gagaggatat catcgacttt
      781 tcaatgggaa atcccgatgg taaaactcca caacacatta tagataaact ttgtgaaagt
      841 gctaacaaag ataaaacctc gggatattct acatccatgg ggatttataa acttcgctta
      901 gcaatttgta attggtataa aagaaaatat aatgtcaacc tagatcctga aaatgaagtt
      961 gtagctacta tgggttcaaa agagggtttt gtaaatcttg caagagcgat tataaatcct
     1021 ggagatgttg ctattgtgcc aactcctgct tatcctatac atactcaagc ttttattata
     1081 gcaggaggta atgtagcaaa aatgccttta gcttataatg aaaaatttga gcttgatgaa
     1141 aatcaatttt ttgaaaattt acataaaact ttaaatgaaa gcatcccgcg tccaaaatat
     1201 gtcgttgtta atttcccgca taatccaaca acagtaactt gtgagaaaag tttttatgaa
     1261 agattgatag caacggcaaa aaaagaaaga ttttatatta tttcagatat tgcttatgca
     1321 gatttaactt atgataacta taaaactcct tctattttgg aaattgaagg tgcaaaagat
     1381 gtagcggtag aaacttacac tctttcaaaa tcttacaata tggcaggctg gcgcgtgggt
     1441 tttgtagtag gaaataaacg cttagtcagt gcgcttaaaa aaataaaatc ttggtttgat
     1501 tatggtatgt acacacctat tcaagtagca gctaccatag ctttagatgg agatcaaact
     1561 tgtgtagatg aaatccgtgc aacttatgat aaaagaatgc acattttact tgaagctttt
     1621 gaaaatgcag gctggaaact tcaaaaacca agagcaagta tgtttgtttg ggcaaaactc
     1681 cctgaaagca aaagacattt aaaaagttta gaattttcaa agcaactttt acagcgtgct
     1741 agtgttgcag taagtcctgg ggtaggtttt ggcgaagcag gtgatgagta tgtaagaatt
     1801 gctttaattg aaaatgaaaa tcgcatacgc caagctgcac gtaatatcaa aaaatattta
     1861 aaagagtaag ttatgaaagt agcgattctt ggttatggca ctgttggaag tgcggtggtt
     1921 aaatttcttt tagaaaatga taaacttatt cgtgcaagat gtgggcaaag cataactcct
     1981 gtgatcgctc ttgctagaag tcctaaaaaa aatgctttaa ttccaattac tcatagcgtt
     2041 gcagaaattt taaatgctga tgtagatgtt tttgtagaat taatgggtgg ggtggatgaa
     2101 gcttttaaaa tagtgagtga aattttaaaa aagaaaaaag ctgttgttac tgcaaataaa
     2161 gctatgcttg cttatcatcg ttatgaactt gaaaatttgg ctaaaaattt agcttttggt
     2221 tatgaagcaa gtgtggctgg aggaattcct attatcaagg ttttaaaaga aggtttaagt
     2281 gcaaataata ttttggctat aaaagggatt ttaaatggta cgagtaatta tattttaagt
     2341 tctatgagtc aaaaaaatat gagttttaaa caagctttgc aaatagctca aaatttaggt
     2401 tatgcagagg ctgatccaac ttttgacata gaagggcaag atgcagcaca taaactgctt
     2461 gttttatcaa gtatcgctta taatcttaaa gctaaacctg aagatatttt gatcgagggt
     2521 attagtgaaa ttgcacctga agatatgtat tttgctaatg agtttgaatt taccataaaa
     2581 cttttaggta tagctaaggt gcgtgaaaat aaagtagaat taagggtgca tcctactatg
     2641 atagataaag aaaaaatgct tgcaaaagtt gatggagtga tgaatgctat aagcattaat
     2701 ggagatttgt tgggtgaaag tttgtattat ggagcaggag caggaggaga ggccactgca
     2761 agtgctgtga tttcagatct tatggatata gcaagagatc aggtaaaagc accaatgctt
     2821 ggttttgtga atactttaga atacaagctt ttaagcaaag atgaaattta tacaaaatat
     2881 tatttaaggg tgaaagttga agataaaata gggattttat ctaaaatcac acaattgatg
     2941 agtgaaaata atatttctat cgatagtttt ttacaaaaac ctaaaaaaaa tgatgaaaat
     3001 tacagcactt tgttttttac tacacattta acttatgaaa aaagcataca aaatttgctt
     3061 gaaattttac gcaaacaaga ttttataaaa accaagcctt ttatgatgcg tatagaataa
     3121 tgggtgtaaa agcttattta gatggaattt taggggaaga taaggcttgt aaatttttaa
     3181 aaaaacaagg ctttgaaatt ttaaaaagaa atttccattc taaatttgga gaaatcgata
     3241 taatagccaa aaaagatgaa attttacatt ttatagaggt taaatttact caaaatgatt
     3301 atgaagtttc cgagcgtttg gatagaaaaa aacttgaaaa aattttaaaa actatagaat
     3361 tttatcatct taaaaatgga atttcatcgg attttcagat tgatctgatt tgcattaaaa
//
LOCUS       DARGEM010000131         3369 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.131, whole genome shotgun sequence.
ACCESSION   DARGEM010000131 DARGEM010000000
VERSION     DARGEM010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.131"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            40..354
                     /gene="trxA"
                     /locus_tag="SFZ78_001592"
     CDS             40..354
                     /gene="trxA"
                     /locus_tag="SFZ78_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG8212431.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            488..1426
                     /gene="trxB"
                     /locus_tag="SFZ78_001593"
     CDS             488..1426
                     /gene="trxB"
                     /locus_tag="SFZ78_001593"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG8212432.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMTPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1464..3245)
                     /locus_tag="SFZ78_001594"
     CDS             complement(1464..3245)
                     /locus_tag="SFZ78_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG8212433.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVVLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNINEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFISKHKYKKGVDTSKI
                     LDEGTLYVGQFNGNVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANLRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         1098 a          550 c          543 g         1178 t
ORIGIN      
        1 taaaatacaa ttagacaaaa attaaagaaa ggaaaaatta tgggaaaata tattgaatta
       61 acaagtgata attttgctca agcaaaagaa ggtgtagctt tagttgattt ttgggctcca
      121 tggtgcggac cttgtagaat gcttgctcca gttattgatg aacttgcaaa tgacttcgat
      181 ggtaaagcta aaatttgcaa agtaaataca gatgaacaag gtgatttagc agctgaattt
      241 ggtgttcgct ctattcctac gcttattttc tttaaaaatg gtgaagttgt agatcaactc
      301 gttggtgcac aatctaaaca agcaattagt gataaactaa actctttact ataaactaaa
      361 ggctagtata actagccttc ttcttaaaaa tttcaaattt atactaaata ataattttta
      421 ttaactacta ttaagaataa tttttatatc attattaata ataaaattca atataaagga
      481 aatataaatg ttagatgtag caatcatagg tggaggtcct gctggactta gtgctggact
      541 ttatgcaact agaggtggtc ttaagaatgt agtaatgttt gaaaaaggta tgcctggtgg
      601 acaaattacc tcaagttctg aaatagaaaa ttatccaggt gtagcccaag ttatggatgg
      661 aatttctttt atgactcctt ggaatgaaca atgtatgcgt tttggtttaa aacatgaaat
      721 ggttggagta gaacaaattt taaaaaatag tgatggaagt tttaccatca aattagaagg
      781 tggtaaaaca gaacttgcta aagctgtgat agtttgtaca ggctcagctc caaaaaaagc
      841 aggttttaag ggcgaagatg aattttttgg aaaaggtgta agcacttgtg caacttgtga
      901 tggatttttt tataaaaata aagaagttgc agttttaggt ggtggagata cggctttaga
      961 agaagcttta tatctagcaa atatttgttc taaggtttat cttatccacc gcagagatga
     1021 gtttagagca gctccatcta cagtagaaaa agttaagaaa aacgaaaaaa tagaactcat
     1081 tactagcgca agtgtagatg aagtatatgg tgataaaatg ggtgttactg gggtaaaagt
     1141 aaaattaaaa gatggtagta ttagagattt aaatgttcca ggaattttta cttttgttgg
     1201 tcttaatgta agaaatgaaa ttttaaaaca agacgatggt aagtttttat gcaatatgga
     1261 agaaggtggg caagtaagtg ttgatcttaa aatgcaaact agcgttgctg gactttttgc
     1321 cgcaggggac cttagaaaag atgcgcctaa gcaagttatt tgtgctgcag gtgatggagc
     1381 tgtagctgca ttaagtgcta tggcttatat agaaagcttg cattaagatt ttataaagtt
     1441 gctaaaagca actttatttt tatttagctt cctatcactc caccatcaag ttttcttatc
     1501 atcattacac ttgatcttgg cgtttttcca taaggaaaag tactaccttt caaaccttct
     1561 cctggatgtt gtatgcctac aaacattgta gtataatcct cactaaaagc aatccctgtt
     1621 aattcacaag caataggtcc tgttaaaaag cgtctgattt cccctgtttt tggatttgct
     1681 gctagcatgc agttatttcc catgccttcg tattcatctt tattagaata agatccatct
     1741 gtttgtatcc aaagtcttcc atctctatca aatttaagtc catcaggaga attgaattta
     1801 ttttcacttg taatattatt tgagccttta tataagcctt gttggttatc aggatttcca
     1861 gcaagagcaa aaatttccca agtaaaatca tcgtctttat gagaattttt tggcatccat
     1921 tttaaaattt gtccataaac atttttagtt cttagatttg ctgcattagg ttcttggcga
     1981 tttttgttgt tcgttagtgt tgcaaatact tctttagaac cactttgttt atggcttgct
     2041 atccattcac atctatccat aggagttgca cctacaatgc ttgcagcaag acgcgtattg
     2101 atgagtactt gagcttgaga cttaaaacca tttttttcat ctaggccgtt tttgccatat
     2161 tctaaggcta tccattttcc ctgtccttta aaatctccca cattgccgtt aaactgtcct
     2221 acatacaaag tgccttcatc taaaatttta cttgtatcaa cacctttttt gtatttgtgt
     2281 ttgctaataa atttataaat aaattcattc atctcatcat cacccatata aactataaca
     2341 gaaccatctt tttctacgat aatttctgca ttttcatgtt taaaacgccc taaagaagtt
     2401 cttttaacag gtgtgctttt tgcatcaaaa ggattgattt ccactatcca accaaaacga
     2461 ttggcttcat tgatattttt agctaaatca aatctttcat caaatttttc ccatccataa
     2521 agactagttt tgttaaatcc atagcgttta agagagtcat taaattctag attttcgtct
     2581 gaacttccaa aaaaatcgtc aaaattttct tcacaggtga tataagttcc ccaaggtgtt
     2641 tgtccatttg cacaatttgc aaaagttcca tgaacaaatt tttcattttt taaaacttct
     2701 tttttagctg ctccacttac ttgcatttta gtgtttgcat cgattctgcg gttatactta
     2761 gagtctaaaa ccacagtcca atcatcaccc tttttttcga tttctaagat actcacaccc
     2821 acactggctt gctcatataa aatatcttct ttgcttaaat ttttaccatg atgattaaac
     2881 atgatttcag gatttatata ttcattatta acggctaaaa ttcctctgtt ttttgaaagt
     2941 ggaaaaaaac tcataccatc atcgttatct ccaaaaacca aatgagcatt tttaactgca
     3001 ttcatatcga tgattttatt ttcatcataa ggttttgctt tactaaaaag tggatcaccc
     3061 caagaaatta aaacctttgc ttcataacct tgcggtacta taactttatc ttgtgtgctt
     3121 gcactaacag ctttaaaacc taacaaatcc ttatccttaa gcacaacagc acttaaattt
     3181 gaacttgcaa aaaaagccac catagaacct aaagctgaac cttttaaaaa caatcttctt
     3241 tccatttgtt tttaccccat attaaaattt aaaacaatgg aagtataaaa atatttggaa
     3301 actttttaga aactttgatg aaaaatttaa attgaagaaa aaatttatac ctagtttttc
     3361 actaggtat
//
LOCUS       DARGEM010000132         3336 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.132, whole genome shotgun sequence.
ACCESSION   DARGEM010000132 DARGEM010000000
VERSION     DARGEM010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.132"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1745
                     /locus_tag="SFZ78_001595"
     CDS             <1..1745
                     /locus_tag="SFZ78_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212434.1"
                     /translation="LKILDKKDYSFVENDSSITIDDFFNELSKDLDTTNTLDKKIIKL
                     KQMYHLDEQKCIKEFMNLDEETQRAFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQ
                     KTSEIFTYAMLKILLSASPFISFTAQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKE
                     QLGIFAPPKKNSIYHIHIKSNLIIKARLQQIEKELIHTKIQMILAQEIKSNLIIQKNT
                     SGLNLFITKIKEYFNEKQIKIYWSDKYMKQLFIYSNQESNISKIALMHSIDIQTQKYT
                     IYTYAKLNKLDLASIVTGEFVGIFLNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAV
                     IRDHFVTYPFAINSKFISFDLKKIFYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLK
                     RLLSYLIIDEKRNATALEDIKEQKYIIDDYTFYFKELKSLELKKCTIYQLPCNHPLFK
                     EFRNKEKQISAFKKDEDSPIQAYNEALQILQDFANGLYNTSKDKTGRYIEDKNKTRRL
                     LEKLNIIGQNNLKAMYMGINGNEESLKAIGKRENNTSKASANADITSETKTPPNFIGR
                     LATTIIIEDGLYMG"
     gene            1764..3050
                     /locus_tag="SFZ78_001596"
                     /pseudo
     CDS             1764..3050
                     /locus_tag="SFZ78_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3054..>3336)
                     /locus_tag="SFZ78_001597"
     CDS             complement(3054..>3336)
                     /locus_tag="SFZ78_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212435.1"
                     /translation="QSSKLNKDYSSISIKDFESIINNIPLIKSTRLINILALSLIAKE
                     LYTPIFEEMEENMFIKYIEAAIQNNIKEDKILFENLTIKALEKYIKDFE"
BASE COUNT         1355 a          415 c          504 g         1062 t
ORIGIN      
        1 tattaaaaat acttgacaaa aaagattatt cttttgtgga aaatgatagt tcgataacta
       61 tagatgattt ttttaatgaa ttatcaaaag atttagatac aacaaataca ttagataaaa
      121 aaataatcaa attaaagcaa atgtatcatt tagatgaaca aaaatgcatt aaagaattta
      181 tgaatttaga cgaagaaacg caacgagctt ttgttgcatg gatggatata gagaaacaaa
      241 tatcagattt atcaaagctt ttggaacaga tgtatggaaa agaatattta aataaggcaa
      301 aagaacaaaa aacaagtgaa atatttactt atgcaatgtt aaaaatttta ttaagtgcta
      361 gtccttttat cagctttaca gctcaaatgt tgtgggattt taatttttta aaaacaatag
      421 aatatgttat tcaagcttgt attaaaataa acaaagaagg atttaaagaa ttttttaaag
      481 aacagcttgg tatttttgca cctccaaaaa agaatagtat atatcatata cacataaaat
      541 ctaatttaat aataaaagca cgcttgcaac aaatagaaaa agaattaatt catactaaaa
      601 tccaaatgat tttagcacaa gagataaaat ccaatttaat aatacaaaaa aatacatccg
      661 gtttaaatct atttatcaca aagataaaag aatactttaa tgaaaaacaa attaagattt
      721 attggagtga taaatatatg aagcaattat ttatatactc taatcaagaa agcaatatat
      781 ctaaaattgc tcttatgcat agcatagata tacaaactca aaaatatact atttatactt
      841 atgctaagct aaataaactt gaccttgctt ctattgtgac tggagaattt gtgggtattt
      901 ttttaaatta tctctttcca acaaatttta aagccctaca agaacaatat gaaagcattg
      961 tttatcagct ttacaccttt aaagatgatt ctcctttagc ggttataaga gatcattttg
     1021 taacttatcc ttttgcaatc aattcgaaat tcattagctt tgatttaaag aaaatttttt
     1081 atggcataga tctttgcaca ggagtttttg acactcattt ttcctttcat tatgaaatag
     1141 atcaaaagct tgaagaaaat aaagaatttc ttttaaaaag acttttgtct tatttgatta
     1201 ttgatgagaa aagaaatgca actgctttag aggatataaa agaacaaaaa tatattatag
     1261 atgattatac tttttatttt aaagagttaa aatctttaga acttaaaaaa tgcactatat
     1321 atcaacttcc ttgtaatcat cctttgttta aagagtttag aaataaagaa aagcaaatta
     1381 gtgcttttaa aaaggatgaa gatagtccta ttcaagctta caatgaagct ttacaaattt
     1441 tacaagattt tgctaatgga ctttacaata caagtaaaga taaaacagga agatatatag
     1501 aagataaaaa taaaaccaga agattactag aaaaactcaa tatcatagga caaaacaatc
     1561 ttaaggctat gtatatgggg ataaatggaa atgaagaaag cttgaaagct ataggcaaaa
     1621 gagaaaataa cactagcaaa gcaagcgcaa atgctgatat cacatcagaa acaaaaactc
     1681 cgcctaattt cataggcaga ctagccacta ctataatcat agaagatggt ttatatatgg
     1741 gttaaattaa gaaaggatag ataatgagtg aaacttatga gatttataca cctaatggat
     1801 taacattaga tgtggaaaaa gataccaata aaatactctt taaagaaaat gttaagccca
     1861 caggcaacta taccgaagaa tattccaaag cggtttttaa atcttatcat attatgaaaa
     1921 actcccccta caaagactat aaaccccaat acctagatcc taacttttat acaggacaaa
     1981 aatccactct agttgaattt aaagattggc aaagtatata tttaaaagat cctatcaaag
     2041 gagctatagc tccttgaact aaagcagaaa aagcttatta taaatcttta aaaactaaaa
     2101 gagaaagata taaatattta gcaataagaa gtggattaag atctgtggtt atagatatac
     2161 cctatgatgc ttatgccaat gtagatgaaa aaggatattt aatcaatgaa gaatacgcct
     2221 atatttatga tgaagttaac aataataaag aaaccttaaa atcttctctt tttagacaag
     2281 aatggggtat agcagcagga atactaggaa aacctgaata ttttgtgcgt tctaaaaatc
     2341 atggctttaa tgccagaatg atacaatgtt ttattttata tattcaactc acaggtggag
     2401 gatatgaaga attaggtata aaaaggggaa tttataatta tgccgataat cttttagaaa
     2461 taggtatagg tatggcaggg atacataaaa atcctttaag ggctaaatta gtaaaagatt
     2521 tagctaaaac tatacagcct gatgaatttg gtatgcttcc ttttatagat gagattatgg
     2581 gagtagattg ggtgattgat ttaaataaat atgattttgc ctatgatgaa gaaggcagga
     2641 tcatttgggc tttatataat gatattgaaa aaggcaaatt aaaagatcca agagatatag
     2701 attctactcc agaaagtaga aataaatttg atgatgctat ggatggatac gaaaatggaa
     2761 tggtaacaag atttgatgta gatattagaa acgaaagaga tgaaagatct gctaaactga
     2821 ctatggatac cctagtatta agcgctaaac tagcagcctt aactcctcct caaggctatc
     2881 ctaatgcacc ttattatttt acacctgaaa gattggaatg gatttataaa agaggatatt
     2941 tagacaaact ccttgatcca agaattcctg ctatttatag atataatttt ccgcaagaac
     3001 ttcgagctaa gataagagct tatgctaaag agcataatat caaagagtaa aaatcactca
     3061 aaatctttaa tatacttttc caatgctttg atggtaagat tttcaaaaag aatcttatct
     3121 tctttgatat tgttttgtat ggcagcttca atatatttaa taaacatatt ttcttccatt
     3181 tcttcaaata ttggagtata taattctttt gcgattaggc taagggctaa aatattgatc
     3241 aatcttgtgg atttgattaa gggtatatta ttaataatac tttcaaaatc tttgatacta
     3301 atagaagaat aatctttatt taatttagag ctttgt
//
LOCUS       DARGEM010000133         3333 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.133, whole genome shotgun sequence.
ACCESSION   DARGEM010000133 DARGEM010000000
VERSION     DARGEM010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.133"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1288
                     /gene="rho"
                     /locus_tag="SFZ78_001598"
     CDS             <1..1288
                     /gene="rho"
                     /locus_tag="SFZ78_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG8212436.1"
                     /translation="KKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPREFRR
                     QELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIKKF
                     ALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKL
                     EYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHLIVLL
                     VDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVIILLDS
                     ITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTG
                     SRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQKIWA
                     IRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            1292..2821
                     /locus_tag="SFZ78_001599"
     CDS             1292..2821
                     /locus_tag="SFZ78_001599"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG8212437.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQAIKQENTTNIIPRITPSPIIPHLEKKTEKNAYEILLDSIYDRDFDLA
                     ECFKQSTNFISFENNTLNINSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKVL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(2818..3042)
                     /locus_tag="SFZ78_001600"
     CDS             complement(2818..3042)
                     /locus_tag="SFZ78_001600"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8212438.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTTRLVTYMFLALIFISLKND"
     gene            complement(3157..3306)
                     /locus_tag="SFZ78_001601"
     CDS             complement(3157..3306)
                     /locus_tag="SFZ78_001601"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8212439.1"
                     /translation="MIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQFVSHVMSMDIK
                     PDLFR"
BASE COUNT         1270 a          560 c          542 g          961 t
ORIGIN      
        1 aaaaaaacaa catcaaagaa cccacgttcc agtggaaggt tataaaatcg aagaattaaa
       61 attattagat ttagaaaatc tagttaaaat cgctaatgaa tgtgaaatcg aaaacccaag
      121 agaatttcgc cgccaagaac ttatttttga aattttaaaa gcacaaacaa aaaaaggcgg
      181 ttttatactt tttacaggga ttttagaaat ttcttccgaa ggttatggct ttttaagagg
      241 tatggactct aatcttagcg atagtgttaa tgacgcttat gtttcaaatt cacaaattaa
      301 aaaatttgct ctgcgtgtag gcgatatcgt tacaggacaa gttagagaac caaaagatca
      361 agaaaaatac tacgctcttt taaaaatcga agcgatcaat tatctgcctt tgcaagaagc
      421 caaagaaaga cctttgtttg ataacttaac ccctattttt ccaacagaaa aaatcaaact
      481 cgaatacgat gcaatgaagc ttacaggtcg tgttttggat ctttttactc ctataggaaa
      541 aggacaacgc gggcttatcg ttgctccacc acgcacaggt aaaacagagc ttatgaaaga
      601 acttgctact gctattgcaa aaaaccaccc agaaatgcat ttaatcgtac ttttagtcga
      661 tgaaaggcct gaagaagtta ccgatatgca aagatgtgta aaaggcgaag tttttagttc
      721 tacttttgat ttacctgctt ataatcatgt gcgtgtagcc gaactcgtga tagaaaaagc
      781 caaaagaatg gtagaaacag gcaaagatgt tatcatctta cttgatagta tcacaagact
      841 ggcacgtgct tataacaccg caactccaag cagtggaaaa gtcctaagcg gcggagtgga
      901 tgctaatgcc ctacacaagc caaaacgctt ctttggtgca gctagaaata tagaaaatgg
      961 aggctcttta accatagttg ctacagcttt aattgataca ggttcaagaa tggatgatgt
     1021 gatttttgaa gaatttaaag gcacaggaaa tagcgaaata gttcttgata gaaatatcgc
     1081 cgatagaaga atttatcctg cgattaatat catcaaatca ggaacaagaa aagaagaatt
     1141 gctccaaggc gtagcaaatc ttcaaaaaat ttgggcaatc cgttcagcga tttctcaaat
     1201 ggatgatgtt gaagcgttga aatttttata ttctaaaatg cttaaaacca aagacaatgt
     1261 agaactttta tctataatga acgagtagaa aatgcttcaa gctttagcga ttaaatacag
     1321 accaaaaacc tttgatgaac tcataggaca aaagacagtt agcgtaagtt taaaatacgc
     1381 cctaaatcat aatcgcttag ctcatgctta tcttttttca ggacttagag gaagtggaaa
     1441 aacttcaagt gctagaattt tttctcgtgc tttagtttgc gaacaaggac caagtgatac
     1501 tccatgtggc acttgcaaac actgtcttgc agcacttgaa ggcaaacaca tagacattat
     1561 agaaatggat gctgcaagca accgtgggct tgaagatata caagccttaa ttgaacaaac
     1621 caaatacacc ccttctatgg caagatttaa aattttcatc attgatgaag tacatatgct
     1681 taccccacag gctgcaaatg cacttttaaa aaccttagaa gaacccccaa gttatgttaa
     1741 atttatactt gcaaccactg atcctttaaa actcccagct accgtgcttt caagaacgca
     1801 acattttcgc tttaaacaaa ttccgcagag tgaaatttta aatcatctta aagaaatttt
     1861 acttaaagaa aatgttaaat ttgaagaaga agctttaaaa tttatagcaa gaagcggcaa
     1921 tggatcttta agagatactt taaccttgct tgaccaagct attatttttt gtcaaaatga
     1981 aatcagtatt agtaaaatta cagatatgtt aggcttttta gatcctcaaa aaatcaaagc
     2041 cttttatcag gctatcttaa caaaagacaa ggaaaaagtt tttgcgtatt tagaggaatt
     2101 acaagattat gaagcctcaa gcgtgattga tgaaatgctt ttttatttaa aagaaagttt
     2161 ttttgcaaaa agtacagaat tttctacttt aatttatgaa agatttttcc gtattttatc
     2221 aaaagctaag aatatgcttt gcgatgatga tggctttacg ctttgtgtta tggcttttat
     2281 gatgatggaa gcaagtcatt taaaagaaat tgacgcacaa atccaagcaa tcaaacaaga
     2341 aaatacaaca aatattatac ctaggatcac accttctcct atcatacctc atcttgagaa
     2401 aaaaacagaa aaaaatgctt atgaaatctt acttgatagt atttatgata gggattttga
     2461 tcttgcagaa tgctttaaac aaagtacaaa ttttattagt tttgaaaaca atactttaaa
     2521 tataaactca aacgcacaag gacaaaatcg cgatacactc aataaaggtt ttaaactcat
     2581 acaagaactt tttaaggcta aatttgggga aaatgctaaa attaatgtgc aaaaagtact
     2641 aacaattgat gaaaataagc ttcaatcctt aactcaagaa ttaccaaaca atgaaaataa
     2701 aaacatagat attcaaagtt ctattaatat gcttaaagaa ggggccaaaa aatttgaccc
     2761 acaagaagat cttaaagagg ctcttaaaga ttgttttgga gagcctagta tagaaaatta
     2821 atcattttta agagagatga aaatcaaagc caaaaacata taagttacca atcttgtagt
     2881 atcaggtaaa cctttccaaa ccttactcat ccacattcca aaccattctg caacaactac
     2941 ttggaaggca aaaaaccata aaatacacaa gttaaagaaa taatcccaaa aaatcttagc
     3001 attatgaaag ctttgagcat ctaaatttct agctttaaac atatcataag cacctttttt
     3061 agagctgtta aggcaataaa agtttcaaaa agaataattg ctatatagcc tatatgataa
     3121 atcacgggag aagtaatagc catataaact acagcattac ctaaataaat caggctttat
     3181 atccatactc atcacatgcg aaacaaattg gaaattagaa ttgtaatctg tcacatttcc
     3241 aaaaaccact atacctgcta acgatacaac ggtaagcaaa ataataattt ttgaaaatct
     3301 aatcattttg cttatgcaaa aacatttttg ttg
//
LOCUS       DARGEM010000134         3329 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.134, whole genome shotgun sequence.
ACCESSION   DARGEM010000134 DARGEM010000000
VERSION     DARGEM010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.134"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            20..472
                     /locus_tag="SFZ78_001602"
     CDS             20..472
                     /locus_tag="SFZ78_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212440.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGVIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFIDNNKPIGFYFDFELKK"
     gene            469..1029
                     /locus_tag="SFZ78_001603"
     CDS             469..1029
                     /locus_tag="SFZ78_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG8212441.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1036..1935)
                     /gene="cysM"
                     /locus_tag="SFZ78_001604"
     CDS             complement(1036..1935)
                     /gene="cysM"
                     /locus_tag="SFZ78_001604"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG8212442.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2062..2358)
                     /locus_tag="SFZ78_001605"
     CDS             complement(2062..2358)
                     /locus_tag="SFZ78_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG8212443.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(2460..>3329)
                     /gene="ciaB"
                     /locus_tag="SFZ78_001606"
     CDS             complement(2460..>3329)
                     /gene="ciaB"
                     /locus_tag="SFZ78_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8212444.1"
                     /translation="DCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVPNDEF
                     VSSKAGKKIFAFINFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKRVYEV
                     STIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHE
                     LIKRAIGLISWQRVDEVRPYYTEGLIHLSLLFESEVLIFENNNLKINFDLGHYKKFKE
                     LTLKNYHELAKHYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEKIGNE
                     IDNSGEFERYKKK"
BASE COUNT         1172 a          538 c          381 g         1238 t
ORIGIN      
        1 ttctaaagaa ttttaattaa tgagaaaaat tatttttatc ctagcttttg cttttgttat
       61 tgctatttta tatattattt ttgattttta tgtaataaaa gattctcaaa aaataacaaa
      121 aactgatttt tctaccccat tgacttgcga tcttaatgtt aaagactgca catatagttt
      181 taacaataaa aaagtcttaa tttccctaaa tcccaaaccc ttacaatctt tagatgttac
      241 aaatctaaag attgtaaatc taggaaatta taacaactta ggaattaaaa tttatggatt
      301 aaatatgtat atgggcgtaa ttaaacctaa aatacatcga ttaaattcaa cagactatga
      361 aagtaaaata gttcttgctg cttgcgtttt agatactatg cgtttcaggg tagaatttat
      421 agataataat aaacccatag ggttttattt tgattttgag ctaaaaaaat gaaaaaaaat
      481 attattttgt ttatagttat agttgccatt attttaggtg taatattttt tattaaaaat
      541 catcaaaatt cttatgattt tatcttaaaa tcagacttaa aagaggaaac caccctaaaa
      601 gattttaaag gagataagct tattatctat tttggatata cttattgccc tgatgtttgt
      661 ccggcaactc ttagtttagt aggcaaagcc ttaaagcaaa tcaataatcc taaggctcac
      721 cttcttttta tttctttaga tccaaataga gataataact taagcaatac aaacgaatgg
      781 ttacgatact tttacccaaa agcagatgcc ttaattgcaa aagatgaaaa aactcttcaa
      841 aaaataacaa aacaatataa tgttcaatat caaaaaatag atctaaatga ttcttttatg
      901 ggttattcta tagcacatag caatatgctt tatcttattg atgaaaaagg tcatttttat
      961 aaagaaatta gcgatttaaa tccacaagaa attttaagag aacttagaat ttttctaaat
     1021 tctcaataat tatacttaag caaaaagatc agttgagagg tatctttcag ccgtatcgtt
     1081 tagcatagtt aaaattcttt tatctggaaa tttctttgct agcatacttg cggcaaatac
     1141 atttgctcca cttgatatac ctaccattaa accacttttg gcaagttctt tggctgtatt
     1201 tatagcatct tcattactta ctgtgatcac ttcatctata acttctttat ttaaaatagc
     1261 aggtataaaa ttcgccccta ttccttgtat tttatggctt cccgcttcac ctttgctaag
     1321 caatggagaa tttagaggct cgactccaac aatatgcact ttttctaatt tttcttttag
     1381 tatttcccca actccactaa tagtaccgcc agttccaaaa ccagctacaa aaatatcaag
     1441 ttcattatcc aaatctctta aaatttctaa agccgtattc ttacgatgcg catttttatt
     1501 tgaaatattt tcaaattgag aaaccataaa agaatttgga gtatttaata atatttcatt
     1561 tgctttatca accgctcctt tcattcctaa atttgcagga gttaattcta acctagcgcc
     1621 aaagagtgtt atcatttttc ttctttctaa actcatagat tcgggcatta cagcaataaa
     1681 tttaagtccc aaatctgcac aaatcatagc caaagaaatt ccagtatttc cactagttgc
     1741 ttcaactatt gtagtatctt gattaatttt tttactatct aaagcatctt taatcatttc
     1801 aaaagctgct ctatctttta tagaatgact aggatttaaa aattcacatt tagcaaaaac
     1861 attgatacca aattttttca aatgtataat aggagtattt cctataagct cacttacttt
     1921 ttcatgtact ttcataattt taatatcctt ttttgtttaa taatgatagt tttataaaag
     1981 tttaaaaaaa taaagtaaat aaaagataca aaatatctga attaattaag aaagaaggct
     2041 agaatttatc tagccgaagt cttatttttt ctttttgccg cttgcttttg caacagcttc
     2101 tttaaggttt ttacctacct taaattttgc aactcttgta gcaggaactt tgattgtttt
     2161 tcctgtgctt ggtactctag cttctctagc agctctttct tgagttgaaa aagtaccaaa
     2221 accaataaaa ctgatgctat cacctttagc taaaacatca gtaatagtag aaataactgc
     2281 atcagtagca gtagtagcgt ctttttttgt tagcccagct gtttgagcaa ctaatgaaat
     2341 gaaatctgct ttagtcataa aagctccttt gttttaattg aaacgcctaa ttttagcata
     2401 tttaaaaaac aatatcaagt aaaaaacagc tttttttaag tttttttcaa aaaactttat
     2461 tattttttct tatatctttc aaattctcca ctattatcaa tttcattacc aattttctcg
     2521 tataaatcat aataaaattt aacaaattct ttacacttag gcataatagg aagaaaaata
     2581 ttatcttcaa tttcacaaaa tctacttaaa aactcttttg catcaagtct taaagcatag
     2641 tgttttgcta attcatgata attttttaaa gttagttctt taaatttttt ataatgccct
     2701 aaatcaaaat ttatcttcaa attattattt tcaaaaatca atacttcact ttcaaaaagc
     2761 aaactaagat gaataagtcc ttctgtataa taaggtctaa cttcatcaac cctttgccaa
     2821 gaaataagtc caatagctct ttttatcagt tcatgaaaaa caggcattat caagtcatct
     2881 tgttcatgat aaaagaaatt tataagtcca cctgtagtag ctttatattc ttctatattt
     2941 ttaaaaaaac cactctgatt cattgttttt tcggtatcat tagcaataaa aaatatatga
     3001 ccaaattcat ggcctatagt tgatacttca taaacccttt tccaaatttt ttcctgataa
     3061 aataaaatat ttcttccaaa atccaaaaat tctttatcaa aaacctcgct agaaattttc
     3121 ataaaaggct ttgttttagc attttcatat acaaaattta taaaggcaaa tatttttttg
     3181 cccgccttag aacttacaaa ctcatcattt ggaacgactt gagctgagaa taaaccttta
     3241 agttcagcac cataaaatat catcggagtg caaatataaa gttgagtttt ttctatatta
     3301 gataaaactt ctttttctaa ttcacaatc
//
LOCUS       DARGEM010000135         3312 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.135, whole genome shotgun sequence.
ACCESSION   DARGEM010000135 DARGEM010000000
VERSION     DARGEM010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.135"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..827
                     /locus_tag="SFZ78_001607"
     CDS             <1..827
                     /locus_tag="SFZ78_001607"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212445.1"
                     /translation="NTKLKKLTWIVAILFIGYKLLFYTEIKNGYVKVTLRPIVTLNQV
                     GYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDITNCYYSSKEKAK
                     KGLNCQFYSNGKQFGIDDIAKQIDLNKSQEENMQKIMQGFSIVRPFEEEKILTDDLEL
                     KYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQKYFIGNDHDFKFK
                     KGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFHDMQWRDEWHR"
     gene            815..2758
                     /locus_tag="SFZ78_001608"
     CDS             815..2758
                     /locus_tag="SFZ78_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212446.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNESSSSAKEPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIRFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKDHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKEVKIKESNEK
                     ENKTSKKEQSIIKDNLYLYSINEKGEFGSSGSIGMAQAQLLEDLNKQAKFVRSEGENI
                     ISLKVAYPEKIDNKIIFVGKVYE"
     gene            2751..>3312
                     /locus_tag="SFZ78_001609"
     CDS             2751..>3312
                     /locus_tag="SFZ78_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212447.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYISLQLEKESDEKLKWAFVEC
                     ESKEKLNLLLHDCNGYIDEKNLKVLFENDDLIYNESYEDNILSFCLPINRSNEPKEDI
                     QDYKYYIVLFAYSSEKTMPNLEDHYIIIDMSFRVGVGDDEDVEESKLRNDFNSDIIQT
                     NCIFSVFEAVEFLKACQSFKEKAKETN"
BASE COUNT         1356 a          373 c          541 g         1042 t
ORIGIN      
        1 ttaatacaaa attaaaaaaa ttaacttgga ttgtagctat attatttatc ggatataaat
       61 tactttttta taccgaaatt aaaaatggtt atgtaaaagt gactttacgt cctatagtaa
      121 cacttaatca agtgggttat tgcataaaag aaggtagaag attaagccaa aatgaattat
      181 ttgaaagagc tactaaagat tggcttgaaa aactttataa ccaagcacat gatccactag
      241 ttatgaatgc agatggagat tggcttgata tcactaattg ctattattca agcaaagaaa
      301 aagcaaagaa aggtttaaat tgtcaatttt acagcaacgg caaacaattt ggtatcgatg
      361 atattgcaaa acaaattgat cttaataaaa gccaagaaga aaatatgcaa aaaataatgc
      421 aaggctttag cattgtaaga ccttttgagg aggaaaaaat tttaacagat gatttagagc
      481 ttaaatattc tttactctta caagataggt taggtgattt tacttttatg ccttatgata
      541 ttagatttat tgtcgttggt ggtgatactg gttattattc aaaatttggt tattctgttt
      601 ttgctttaat gatacaaaaa tattttattg gaaacgacca tgactttaaa tttaaaaaag
      661 gcactgtaga atattggaaa aataaagata ataaaaacaa tcatgaatac atatattatc
      721 ccattacaaa ttgtggcgaa gttgaaatgc gttatgactt tgatcctcct ggattatatt
      781 atcaattatt tcatgatatg caatggaggg atgaatggca tcgttaaatt taaaaggcga
      841 ttatggagta gaaattttat cctattatct ttgggggcaa agcacaccgc caagtgattt
      901 agccagaaaa gataaccgtg tgcttatagg taaagattat caagcaagag atgaaaaaga
      961 aataatcata caagcttcag cacttgatta tatgaaatat gtagatagat ataccaatgc
     1021 tacaaatttt gggatatttc aaaatttttt caaaagtgtt tttagtgaaa aagaacttgg
     1081 ggaatttaaa gataaaatag aaaatgaaac atatatttta gaattagacg atatcataaa
     1141 aactaaggta tatggaggtg taaatccgtt tcttgatgaa gataataaga ataaagataa
     1201 aagcactaaa gataaagaaa ataatgaaga aaataaatac gaaaaatacg atgaaaataa
     1261 aatggcagtt agaataattc attattattt agatacaaat tcaggcaatt atgctaaaag
     1321 agcttttgct tttggaagca caagtatagc atttaataaa gatgtaaaat ttcatattag
     1381 tgctaaaact tatgaacctg tttgtatttc caatctaaaa ctttatcctt taaaggataa
     1441 ttttgatttt gaaagtgata gcagtcttgc agaatttgta aatttctttc tagaaaagga
     1501 attagatccc ttaaaaatag gtagaacggt taatattcat tttatagatc aagaaaagat
     1561 tacacctatg gttatttata aaagagtatt tcaaatactt caaaaccaat cttttaattc
     1621 tttaactcct tctataactt cacttcgtga atattataaa acccgtatcc tgccatctgg
     1681 ggtattatat ttgcaagatg acaatacaaa ctctcaaacc aatttagaac agactatcct
     1741 ctacaacaat acaagtttta acaaaatttc aaaagaaccc ttaaatgaat cctcatccag
     1801 tgctaaagaa ccttgcttta tcactttata tttaaaagat gaacacaata aacccattgc
     1861 taatgctaaa atcattatca aaggttttaa acatgatgaa gctttaagag tagttaatct
     1921 aaaaagacgc agtgatgaaa agggtaaaat aagatttgat aaagaaaagt attttagtga
     1981 ttgttatagc tttaaagtaa agcttgatga aagtgaagct tattttccta ctcctttaca
     2041 aaatgctaaa aggatattta ataattatac ccatcacaaa gttggactca tacttaaatt
     2101 taaagcaaaa gatcatttag tttatgatgg atttaatctc tatcattata aaggaaatga
     2161 attaattaat tcttatatgg caagaagtgg tactgctaag gcagataatg aaaaaagaag
     2221 taaaaagcaa attgcaaatt atttttacca agatgaaaaa gatacaagta aaggtaaaaa
     2281 agcttatttt tattatgatg atgaaagtat taaagataga tttggcactt tgcctgaagg
     2341 agaatattat ttaaagatta atgaaatagc taaagatact aaccctagct ttttaaaaga
     2401 ttatcccttt gaaataggaa aaacttgggg aaaatgttgt gtaagattat ataccaataa
     2461 agaatgttct aaaactttta aagaagtaaa aataaaagaa agtaatgaaa aagaaaacaa
     2521 aacaagcaaa aaagaacaaa gtataataaa agataatcta tatctttact ctatcaatga
     2581 aaagggagag tttggcagta gtggtagcat aggtatggca caagcacagt tattagagga
     2641 tttaaataag caagctaagt ttgtgcggag tgagggggaa aatataatct cactcaaagt
     2701 ggcttaccct gaaaaaatag ataataaaat tatatttgta ggaaaagttt atgaataaaa
     2761 cactaatatt tcatgaaaat tcccatattg atttaaatgc ttcttttgca ccagggactt
     2821 atataagctt acaactagaa aaagaaagtg atgaaaaact aaaatgggct tttgtagaat
     2881 gtgaaagcaa agaaaaatta aatttattat tacatgattg taatggctat attgatgaaa
     2941 aaaatcttaa ggtattattt gaaaatgatg atttgattta taatgaaagc tatgaagaca
     3001 atattttatc cttttgcttg cctataaata gaagcaacga gcctaaagaa gacatacaag
     3061 attataaata ctacatagtt ttatttgctt atagtagtga aaaaactatg cctaatttag
     3121 aagatcatta catcatcata gatatgagct ttagagtggg agttggagat gatgaggatg
     3181 tagaagaaag taaactaagg aatgatttta atagtgatat aattcaaaca aattgtattt
     3241 ttagtgtttt tgaggctgta gagtttttaa aagcttgcca aagttttaaa gaaaaagcaa
     3301 aagaaacaaa ta
//
LOCUS       DARGEM010000136         3304 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.136, whole genome shotgun sequence.
ACCESSION   DARGEM010000136 DARGEM010000000
VERSION     DARGEM010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.136"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            357..1019
                     /locus_tag="SFZ78_001610"
     CDS             357..1019
                     /locus_tag="SFZ78_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8212448.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHRKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
     gene            1016..1816
                     /gene="dsbI"
                     /locus_tag="SFZ78_001611"
     CDS             1016..1816
                     /gene="dsbI"
                     /locus_tag="SFZ78_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG8212449.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            1852..3289
                     /locus_tag="SFZ78_001612"
                     /pseudo
     CDS             1852..3289
                     /locus_tag="SFZ78_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
BASE COUNT         1151 a          414 c          587 g         1152 t
ORIGIN      
        1 ctactatttt tacatacttt tatgatttta ccttttgagt gaaataaact tatccataaa
       61 atataatgta aaaaattgat aattttattt cgtaaattaa aattatattt tacttttctt
      121 gaaaactata aagaatattt aaaaattaaa ttattttata ttattatcaa aatatacata
      181 aaaatgataa cttgtgcatt aaatttttta atcccctatt cttgattttt agttaaagta
      241 aatattctta gttataacat tttttaagaa tatttttatt ttaatagttt tataatagtt
      301 attacataaa aacttaataa aaagttttat caaaaccaaa tttcaaggag agggtaatga
      361 aatttccagt aaaattagca agatctattg ttgtatgtgc ttttttagca ggtataagtg
      421 ctagcgcatt aagtgaaggt aaagaatatg taattcttaa aaatcctatt gctaacgctg
      481 ataattcatt gattgaaatt ttttcttatc actgtactca ttgttatgat catcgcaaat
      541 ttaataccat gggtaaagtt aaagaaaaat tacctaattt aacttataaa ttttatcctg
      601 taagttctat gggagattat ggaaggcaag ctaatgaaat ttttgctttt gcgacattta
      661 aggatggtgt aaataaaatt gatcctacgg ataaaaatag cttaactcat aaagttgctg
      721 aagcttattt taatgcatat tttaagaaaa aacaaagatg ggaaaatggt aaaaatcctg
      781 aagcttttta tagtgtcggt ttaaaagcaa tgaatgtaag taaagctgat tttgaaaatt
      841 tcttaaaaac tccagaggct gcagagcttt taaaaagtta tgaaattgcc aatcctattt
      901 cgcaaaatta tggcacccct gcttttgttg ttaatggaaa atatcaaatc gttccaagtg
      961 caatcaactc tccagaggct ttgattgaaa ttactaaaga acttagcaag caaaaatgag
     1021 ttatataaaa atgaaagata attgcagaaa tttttcactt tccaaatggc aagatacgcg
     1081 caaaccttgg ttgattttga ttatagttac tatagggctt acttgtatag cacatttttt
     1141 atttcaagaa tatcttttta tgaaaccttg tgaacaatgt gtgtatataa gatttgatat
     1201 gcttgttatg gctataggtg gtatgattgc attaatcaac cctgcaaata atattataaa
     1261 aattttttct tatagcttag ctttttatgg aatttggctt ggcttggagc attgtctaac
     1321 tttaaatcat atccatgaag tggttcattc tgaaaatcct tttgcaggcg tagatggatg
     1381 tcgtgaaatt cctatttatc catttaattt acctttgtat aaatgggctc ctagttggtt
     1441 tttgccaaca ggagaatgcg ggatggatac ccctgtagtt ccagaaaatg cttataatca
     1501 tcttaatgct tttcaaaaat tttttatagg aactccacct gattttgaaa atgggcttta
     1561 tagtaatggt tggtatttga ttcctagttt aaagtttatg aatatggcaa tctgctgtct
     1621 tatagcattt ttatgttgtt ttgtcgtgct ttttgcaatg tttatagcct atgttttaga
     1681 taaaaataaa cctaatgcta aaatttttgc attggtgatt gttgctttgg ttttggtgct
     1741 taaatttata ggcgaatcaa aaaatccgaa tcaaaatata gctagtttaa atcaagtcgt
     1801 tttaagatac tcttaaaata ggatgtctta aataatttta aaggattgat catgagactt
     1861 agcaaaactc tttgcatgga attttggcgg gttctaccct acttgcacct aatgctttaa
     1921 tggccatggg tggtcctagt ggagtgaaaa tagattggca aattcaagga caaatgggta
     1981 tgattaaaat gaatccttat ggattgtctc ctttgactgc tattatcatg aataatgggg
     2041 ttatgtctta agcgatataa aaaaatcaaa tggtcaaact atttcttaat aatgtgaatt
     2101 ctaaaatggc taagacgtat ggtggaattc ctatttttgg actttatcct tcttatagta
     2161 aaggtaagtt atactaaaac cgcaaatggt aaaagtcaaa aagtcattga tgagatttat
     2221 aaaattacaa ctccatgggc tagcatagaa ccaagcggaa ggcactgatc aaagaggaac
     2281 tctttttgaa aatgtgaaag tattaaaaat ggatccaaaa ttttcagata ggctatattt
     2341 agtaaataat gctcctggaa aataatctgg caaagactca taatctgtat ggaataatct
     2401 tgtaggtggt gctatggaat gggatgaaaa ttcaaatgtc tttattataa gataccaagg
     2461 gtgaaatcag atggtattat gataacaata aactaatgaa ctggggtaat atttacaatc
     2521 gtggaattat gataagtttt cgtcaaaaca aagatggagc tttaacttgg ggatttggtc
     2581 aaagatatgt aaaatacgat gtctgggaag agaaattttc aatcgcaaat tacctgctgc
     2641 ctatatagat tttttctcat gctatggaca atatgcaaaa aatgggcatt atttcttcaa
     2701 caaatacttt gcgtccaaga tagtaagcat gtacgcacag tgtgtgatac tattatagaa
     2761 gtagatgagg atggtaatgt tgttgatgat tggagattgt atgagatttt agatccttat
     2821 agaagtacta ttatcaaaac tttagatcaa agtgcagtgt gtttaaatat agatgcaagt
     2881 aaagtgggta aaactttaag cgatgaagag cttgccaaaa tggatgaaag cgacaaattt
     2941 ggagatatag caggtatagg taggaattgg gcgcatataa agggtggaat aaagaatttc
     3001 aaaaatattt attgcaacct gtagataaaa atgacaatga atggttttat cctgtaactt
     3061 ctttaactca atatgaacca gataaagatt ctattatggt ttatagtgca acgctggaat
     3121 ggcttttaat cttagtaaag gtgtaagtct tggagaacca aaacctaaaa ttgatgaatt
     3181 taactggggc gctaaggagc cttcggttca aattcaattc agcggttcag gcacgggtta
     3241 tcaagcaatg ccttttagtg ttgatcaagc attcaatcct aaaaaataaa taagcccaaa
     3301 ttta
//
LOCUS       DARGEM010000137         3258 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.137, whole genome shotgun sequence.
ACCESSION   DARGEM010000137 DARGEM010000000
VERSION     DARGEM010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.137"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(73..1875)
                     /locus_tag="SFZ78_001613"
     CDS             complement(73..1875)
                     /locus_tag="SFZ78_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8212450.1"
                     /translation="MYNPNSAIERVKNHLAYKLGQAMIDFTNNGGGYIALFKKLYKIK
                     KQHKKEQKIYQQTIQIFPQLKYPSLETCGDYEQALRYKFHLSYMLGEVLIKADKTWHK
                     GSGFKLKNDIKKANKEFQIFREIFKEFDQINSSILEGLINNKQLFLKEFPRIKNILKI
                     HQDYKAILDNIFHNFNYFIQNFDLIEEWLLSDDFNERYKKGSHPYPSLLDPKKLNDEN
                     EKINYKNIPAELAWEMNLPLPDRYEFVIFGSHGVGMKSVLAILKFLGYHNPSYLNHEA
                     EGKFRYYQAYVTFLSKKIFFLDIFDYGFEGCDKYLLMIAKKSKCIYFTRDPICILETY
                     INAKIRNPNFSMKISIDSNLDGKLNLYKYVNSLEAQKNFIFSKNMGLRACYFEYSVVD
                     LLKLKDILYIDMNELQSINIVNTFIKIFNFLNISLNINDQIKNINFGYSWYFNGLEIV
                     SSRFSFFISTHASVLLNDKVWENYSEITDLVSYDYDVLDFKIFVKSDCYALLINDEKE
                     LKKMNTFLKKFIQEFQKQVGIERSRKITPSQYLKFLFTEEKKEKTIKLKELFDYELQH
                     IKQHRPDIVASWKYYQEFERMCKELDENNQNPSL"
     gene            complement(1888..2562)
                     /locus_tag="SFZ78_001614"
     CDS             complement(1888..2562)
                     /locus_tag="SFZ78_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8212451.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEIILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVL
                     NGDTFFDIDLSKLKLNRSKICLALKQMNDFDRYGMINIDKHGLVISFEEKVFKKQGLI
                     NGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYYNFT
                     SNQSYF"
     gene            complement(2550..3155)
                     /gene="gmhA2"
                     /locus_tag="SFZ78_001615"
     CDS             complement(2550..3155)
                     /gene="gmhA2"
                     /locus_tag="SFZ78_001615"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8212452.1"
                     /translation="MEVINSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGVSGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFFCKQ"
BASE COUNT         1111 a          526 c          348 g         1273 t
ORIGIN      
        1 ggggggatct cctttaaaaa ataaattaat acaaaaacga gaaataatta tatataatta
       61 ttgattaaaa aattataaag atgggttttg attattctca tctaactctt tacacattct
      121 ttcaaattct tggtagtatt tccaagaagc tactatatcc ggacgatgtt gcttgatatg
      181 ttgcaactca taatcaaaaa gttcttttaa tttaatagtt ttttctttct tttcctctgt
      241 aaataaaaat tttaaatact gactaggagt tatttttcta gatctttcaa tgccaacttg
      301 tttttgaaat tcttgtataa atttttttaa aaaagtgttc atttttttta attctttctc
      361 atcattaatt aacaaagcat aacaatcaga tttaacaaaa attttaaaat ctaacacatc
      421 ataatcatat gatacaagat cagttatttc gctatagttt tcccaaactt tatcattaag
      481 caatactgaa gcatgagttg aaataaaaaa actaaatcta cttgacacaa tttctagacc
      541 attaaaatac caagaatatc caaaattaat atttttaatt tgatcattaa tgtttaaact
      601 gatatttaaa aaattaaaaa ttttaataaa agtgtttaca atatttattg attgcaattc
      661 attcatatca atatataaga tatcctttaa tttcaagaga tctacaaccg aatattcaaa
      721 ataacatgct ctcaaaccca tatttttaga aaaaataaaa tttttctgag cctctaaact
      781 attaacatat ttatataaat ttaattttcc atctaaattt gaatcaatgc taattttcat
      841 tgaaaaattt gggtttctaa ttttagcatt aatataagtt tctaaaatac aaataggatc
      901 tcgagtgaaa taaatacatt tggatttttt agctatcatt aataaatatt tatcacatcc
      961 ttcaaatcca taatcaaata tatctaaaaa aaatattttt ttagataaaa aagttacata
     1021 agcttgataa tatcggaatt taccttcggc ctcatggttt aaataactag gattatgata
     1081 tcctaaaaat tttaaaattg ccaacacgct cttcattccg acaccatgac taccaaaaat
     1141 cacaaactca tacctatccg gtaagggcaa attcatctcc caagcaagtt cagcaggtat
     1201 atttttataa ttaatttttt cgttttcatc atttagtttc ttgggatcaa gtaaagaagg
     1261 ataaggatga cttccttttt tatatctttc attaaaatca tctgataaca accattcttc
     1321 tataagatca aaattttgta taaaataatt aaagttgtga aagatattat ctagtattgc
     1381 tttatagtct tgatgaattt ttaatatatt ttttattctt ggaaattctt ttaggaatag
     1441 ttgtttatta tttatcaatc cttcaagaat gctagagtta atctgatcaa attctttaaa
     1501 aatttctcta aaaatttgaa attctttatt tgctttttta atatcatttt ttagtttaaa
     1561 tccacttcct ttatgccaag ttttatcagc cttgattaaa acttcaccca gcatatagga
     1621 caaatgaaat ttatatctta aagcttgttc ataatcacca catgtttcta aacttggata
     1681 tttgagctga ggaaagattt gtatagtttg ttgataaatt ttttgttctt ttttatgttg
     1741 ttttttgatt ttatagagtt ttttaaataa tgctatatac ccccccccat tgtttgtaaa
     1801 gtcaatcata gcttgaccta gtttataagc aagatgattt tttactcttt ctatagctga
     1861 gtttgggtta tacatagggt ttctccttta aaaatagctt tggttgcttg taaaattata
     1921 ataatcctca ggcacgccaa tatctataaa ataatcatca aaaatacaag ctctagcctt
     1981 tagcttttta taattttctt gtaaaaactc ttcaaaagaa aatttttcct gcaaagcaaa
     2041 atcattaaaa atatctttag ttaaaagata aattccacca ttgattaaac cttgcttttt
     2101 aaataccttt tcctcaaagg aaatcacaag cccatgctta tcaatattta tcatgccgta
     2161 tctatcaaaa tcattcattt gttttaaagc gaggcaaatt ttacttctat ttagctttaa
     2221 tttacttaaa tctatgtcaa aaaaagtatc gccatttaaa acataagcct cgttttttat
     2281 aaatttcaaa gcctctttta tggctccgcc tgttcctaga ggctcttttt cgatactgta
     2341 ttttattttt atacctaaaa actcatcttt aaaatactct tttatcactt catatttgta
     2401 tgatactgct aagataatct cttttatgcc ttgtttttta agatactcaa aaataaattc
     2461 taaaaaaggt ttattattta tcggtgccat aggctttgga atgtccttta taacactttt
     2521 aagtcttgtt cctaagccgc cacaaagtat tattgcttgc aaaaaaaacc tttaccgaaa
     2581 agctcttctt cgacaatagc acaaataata tgtcctatta aaatatgtgc ttcttgaatt
     2641 cttggcgtgc aagttgaagg cacttttata caataatcac aaagttcatt catcgctcca
     2701 ccactaactc cacttaagcc tatacttatg atttcttttt gtttgcaaag ctctaaagct
     2761 tttaagatat ttttactatt tccgcttgtt gaaatgccta taaaaacatc tcctttaaca
     2821 ccttgagctt gcacttgtct agcaaataaa ttttcataac cataatcatt cccgatagct
     2881 gttaaaatac ttgtatctgt cgtaagtgcg atacttgcaa taccgggcct atcaaaataa
     2941 aacctactta caaattcccc tgcaatatgc tgtgcatctg ctgcgctacc accgtttcct
     3001 gctaataaag ttttgttacc atttttataa gcttttatga cttctaatga agcattttta
     3061 ataagagtta tcaaattctc atcttttaaa atttgctctt ttactaaaat tgattcttga
     3121 aaatgttctt ttatatatga atttataact tccatgattt ttatttaccc tttgaaaatt
     3181 tgaaacattc gatccctttt gcagttctta taacatctcc ttgaaaatat ttcttcctta
     3241 taaaatctag aatttcat
//
LOCUS       DARGEM010000138         3206 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.138, whole genome shotgun sequence.
ACCESSION   DARGEM010000138 DARGEM010000000
VERSION     DARGEM010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3206
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.138"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            30..1061
                     /gene="pseI"
                     /locus_tag="SFZ78_001616"
     CDS             30..1061
                     /gene="pseI"
                     /locus_tag="SFZ78_001616"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG8212453.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALKSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFT"
     gene            1058..2029
                     /gene="legB"
                     /locus_tag="SFZ78_001617"
     CDS             1058..2029
                     /gene="legB"
                     /locus_tag="SFZ78_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG8212454.1"
                     /translation="MKNILVTGADGFIGSHLCESLIKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVVSGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLNLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            2022..3176
                     /gene="legC"
                     /locus_tag="SFZ78_001618"
     CDS             2022..3176
                     /gene="legC"
                     /locus_tag="SFZ78_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEG8212455.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
BASE COUNT         1194 a          511 c          565 g          936 t
ORIGIN      
        1 gtcaggaaat ttaccaaaga aagaaaagta tgcaaatagg aaattttaac accgataaaa
       61 aggtttttat catagcagaa cttagtgcaa atcacgcagg aagtcttgaa atggcactta
      121 aaagcataaa agcagccaaa aaagcaggtg ctgatgcgat aaaaatccaa acttacactc
      181 cagatagcct cacactaaat agcgataaag aagattttat tattaagggt gggctttggg
      241 ataaaagaaa actttatgag ctttatgaaa gtgcaaaaac cccttatgaa tggcattctc
      301 aaatctttga aaccgcacaa aatgaaggca tactttgttt ttcaagtccc tttgctaaag
      361 aagatgtaga atttcttaaa cgctttgatc ctatagccta taaaatcgct tcttttgaag
      421 ccaatgatga aaatttcgtg cgtttaatcg ccaaagaaaa aaaacctact atcgtttcaa
      481 cgggcattgc tacagaagaa gaacttttta aaatctgtga aatttttaaa gaagaaaaaa
      541 atcctgattt aatcttttta aaatgcactt cggcttatcc tactgccata gaagatatga
      601 atttaaaagg catagtaagt ttaaaagaaa aatttaatgt tgaagtggga ctaagtgatc
      661 atagctttgg ttttttagcc cctgttatgg cagtagcact tggagctaga gtgatagaaa
      721 agcattttat gttagacaaa aacatagaaa gcgaagacag taaatttagt cttgattttg
      781 atgaatttaa agctatggta gatgcagtaa gacaggctga aagtgcttta ggtgatggta
      841 agttagactt agatgaaaaa gctcttaaaa accgtgtttt tgcaagaagc ttatatgcaa
      901 gcaaggatat caaaaaaggt gaaatgttca gtgaagaaaa tgtaaaatca gtacgtcctt
      961 cttttggact acatcctaaa ttttatcaag aacttttggg aaaaaaagcc actaaagata
     1021 tagaatttgg cgatgcttta aaacaaggag attttacatg aaaaatattt tagttacagg
     1081 tgctgatggt tttataggct ctcatctttg tgaaagtttg atcaaaaaag gttttaaagt
     1141 cagagcttta agccagtata attcttttaa tttttgggga catttagaaa aaagtccttt
     1201 tttaaaagac atggaagttg taagtgggga tttaagagat agtttttttt gcgaaaaaat
     1261 caccaaaaat atagatgcga tctttcatct tggcgcctta atcgccatcc cctactccta
     1321 cacagcccca caaagctatg tggataccaa tgtcaatggc actttaaata tgctcgaagc
     1381 agctaaaaaa aacgaaattt cgcattttat ccacacctca acaagcgaag tttatggcac
     1441 ggccttttat gtgcccatcg atgaaaaaca ccctttacaa cctcaaagcc cttattctgc
     1501 aagcaaaatc gctgcagata tgatggcgct gagttattat aattctttta atttaaatgt
     1561 caatattgca cgccctttta acacctatgg accaagacaa agcgcaaggg ctatcatacc
     1621 taccatcatc acacaaattt taagcggagc aaaggaaatc aaactaggag atttaagccc
     1681 taaaagggat ttaaattttg tgctagatac ttgcgagggt tttatctctc ttttaaattt
     1741 aaaacatttt ggagaagttt ataatatagg ctcaggagtg gaatactcca tgcaagaagt
     1801 acttaatctc atacaaaaaa ttttagattc taaggtaaaa atcatccaag atgagcaaag
     1861 attgcgtcct aaaaatagcg aagtttttag actttgttgc gatgcaaaca agcttaaaaa
     1921 agctacaaat tggcaaagca aaataagtct agaagaaggt ttaagacaaa gcatagagta
     1981 ttttaaagaa aatttagaaa attataaaag tgagctttat aatgtttgaa aaagaaattt
     2041 cttttataaa aagtcttttt aataaagaaa atatcgccct acatgagcct tgctttatag
     2101 gcaatgagaa aaaatatctc ttagaatgta tcgatagcgg ttttgtttca agcgtaggag
     2161 aatttgtaac gcgttttgaa gaagctttaa aagaaaaaac caaagcacgc tttgtcatcg
     2221 ctacaaatac aggtacagca gcccttcata tcgctttatt agctaatggt atcgatgaaa
     2281 actgcgaagt catcactcaa agcataagct ttgtcgctac ggccaatgct atcgcttata
     2341 caggtgcaaa acccgttttt ttagatatag atgaaaacac tctaagttta agtcctaagg
     2401 ctttagagca ttttttagaa aatcaaactt atcaaaaaga taatcttagc tataacaaaa
     2461 ccacacacaa acccatcaaa gcttgtgtta ttatgcacac ctttggttta agcgctcata
     2521 taaaagccat caaagagctt tgtgaaaaat accacatcct tttaattgaa gatgctgcag
     2581 aagccttagg aagcacctat gaaaacaagg ccttaggcac ttttggaaag tgtggaattt
     2641 taagctttaa tggtaataaa atcatcacag gtggatgcgg tggggcgata ttaagcgatg
     2701 atgaaaattt agccaaactt gcaagacacc ttagcaccac agctaaaatc ccccatcctt
     2761 acgaatacga tcatgatagg atagcttata attaccgtct ttgcaatata aacgcagcaa
     2821 tcttgcttgc aggacttgaa aatttagaac tttttttaga aaacaaaaga gaacttgcta
     2881 aaatttacaa ggattttttt aaaaatcacg ataaatgtaa atttatcgat gaaaaaagca
     2941 atgaaaaaag caatttttgg ctcaatacct tgctttttaa agatgaaaat ttaagaaata
     3001 tctttttaga agaatgcttg aaaaataata ttttcgtccg tcctgtatgg aaaagcttac
     3061 cgagtttaaa agcttttcaa aactgtcaaa gcaatgagct tataaacact aaaaaattag
     3121 aaaaacgctt gattaattta cctagtagcg ttagaatagc aaataaaaag gaatgatgcg
     3181 ttgcaaaatt taattcaaag cattaa
//
LOCUS       DARGEM010000139         3201 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.139, whole genome shotgun sequence.
ACCESSION   DARGEM010000139 DARGEM010000000
VERSION     DARGEM010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.139"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..790)
                     /locus_tag="SFZ78_001619"
     CDS             complement(<1..790)
                     /locus_tag="SFZ78_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG8212456.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNS"
     gene            complement(781..2025)
                     /gene="cbrR"
                     /locus_tag="SFZ78_001620"
     CDS             complement(781..2025)
                     /gene="cbrR"
                     /locus_tag="SFZ78_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG8212457.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(2131..>3201)
                     /locus_tag="SFZ78_001621"
     CDS             complement(2131..>3201)
                     /locus_tag="SFZ78_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HEG8212458.1"
                     /translation="NAYSQISNELNAILEEEKKVEELKELARAQIEKISSINPKIGEY
                     EELLILKKKLSKKDKLEEAWSKAERIFELEKVVIEALNLSEVDASFFSECLNELRVIC
                     ENQKMEDLDFDVEALLDRIENLSYLIKRYESIENALEVLKQKKYELEHYENLSFEKKE
                     LEKKFQELKQKLEEKAQILTQTRKKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISI
                     LGKDEIMLDINLAHLKNLSSGELNRLRLAFIATECNILNTGKGILFLDEIDANLSGKE
                     AMSIAKVLEELSKFYQIFAISHLPQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELA
                     RMVSGELVSDEAIEFAKTLFKN"
BASE COUNT         1071 a          592 c          329 g         1209 t
ORIGIN      
        1 cagaattgtt aaaacaaatt tctagaagtt cttttcttga taaattcaat acttcacaca
       61 ttttgtttgc tacaaattga gttaacaaag gttcatttct tttaccgcga taaggctctg
      121 gagtaagata tggagcatca gtttcaagta gtagtctatc ttttggaatt ttaggtaaaa
      181 tttcaactaa tttcttagca tttttaaaag ttaaaactcc cccaatacca aaataaaatc
      241 catcttcaaa aagagttagc aaatgttcgc ttgcattaaa gcagtgtaaa actcctccta
      301 caagatcctt agaataccca tgtaaaatct cataggtatc atgatttgct tctcttgagt
      361 gaatgataac aggtttttta aattcaatag caagttcaag ctgtgcgata aaaatctttt
      421 tttgattttc tttttctttt tgaatttctt cagcaagatc acttttaaaa cgaaaataat
      481 caagcccaca ttcacctaca gctacacatt tttcatcgca taaatactgc cttaaaattt
      541 tctcatcata attatcaatt tcataaggat gcacccctgc tgcaaaaaaa atatttttat
      601 atttatgagc aattgtagct gcatagggca aatcttttat atcagcacca ggtatgatga
      661 ttttctctat accattttta aaagcacgat ttaaagtttc atctaaatca tctttaaatg
      721 cttcactgtc tagatggcaa tgtgtatcaa caatccttaa accatcttga aaatcaagat
      781 ttaagaacat acttcaactc tatccttgcc attatctttt gcttgagaca atattttact
      841 tgctttatca accaaagaat caatcttatc tccacttttt ccaaaaacca cgcctataga
      901 agctgtaaaa aagacttcat ctaaattaac caaaacacca gcctttttta tatttactcg
      961 tatacgagaa aagattttaa tcgctctttc ttgagatata tttttaagta aaatacaaat
     1021 tttttctgca ctatatctac ctacaagatc tcttccttta gtttcattaa ctatttcatt
     1081 ggcgcagatt ttaattactt catcaccaac ttcacggccg tattcatcgt taatcatttg
     1141 aagattatct atatctaaaa aagcaaaagc aaattcctcg tcttttgttg ctatttcgtt
     1201 aaaataatca tctattccat cgattaaagc attataattt ttaaccccag atacaggatc
     1261 taaaacatta taagtgctta aaaatttttt atcatccatg taagataaac aacgatctaa
     1321 gcgacaatta aaactttcct tgcttaaagg cttaaacaaa tactcattaa ctccattttt
     1381 aaaagaattc gcttcaaatg aatcattatg atcccccaaa agaatcacac ctaattcatc
     1441 atcactaaaa cgttctctta cttgagtcaa aagctcaaaa ccgctaatta ctggcatatt
     1501 gacatctgct ataataagct taacatcatt attatcattt aaataactca ttgcttcttc
     1561 accatgagcc gcagctaaaa cattaaattg tctttgagta agtatttttt taatttcatt
     1621 acgttcaggt agcttgctca tagctacaat cactttagtt tttgcatatt gattaagttt
     1681 tacaatagaa ctaataatct catcaatgca agtttcactt tctttaaaaa tataatctaa
     1741 tatatcttta tccataaatt tttctttagt agccttatca ccactagccg taagaacaat
     1801 agcaggaatt ttcttttcta taacataatc cacaacttca ccatttgggg catctggcaa
     1861 gcataaatcc acaaaagcta aaaaataatc attattcatt aactccttag cttcagcaaa
     1921 accaaaagca atatctacct cataatctaa agtcatttga atttttttag ccaaaagttt
     1981 gccgagcatt ttattgtcat caataattaa aattttctta ttcatagtgt gtaaaatacc
     2041 tttatatcta aaatttttta ttatatttgt ttcaaaagaa aggaaatttt tatagttata
     2101 tattttaaca tagcaaaata aaaaatccgc ttaattctta aataaggtct tagcaaattc
     2161 gatcgcttca tcactaacaa gctctccact taccatccta gcaagttctt taattctttc
     2221 ttcttgatca agctttttta ccttactttc ttcaccattt ttttcaacta aaaaatgatt
     2281 atgtgcctta gaggaaagtt gaggcaaatg agaaatagca aaaatttgat aaaacttaga
     2341 aagttcctct aaaaccttag ctatactcat agcctctttt ccgcttaaat ttgcatcaat
     2401 ttcatctaaa aataatatcc ctttgcctgt atttaaaata ttacattctg tggctataaa
     2461 agcaagtctt aagcgattta attcacccga acttaaattt tttaaatgag ctaaattaat
     2521 atctagcatt atctcatctt tgcctaaaat tgaaattttt tcattttctt taagcgtcaa
     2581 acttgcatct ttcatataaa gatctttaag ataattattt aaacattttt ctaatttttt
     2641 aaggtttttc tttcttgttt gagttaaaat ttgtgctttt tcttctaatt tttgttttaa
     2701 ttcttgaaat tttttttcaa gttctttttt ttcaaaactt aaattttcat aatgctctag
     2761 ctcatatttt ttttgtttta aaacttctaa agcattttct atgctttcat aacgcttgat
     2821 aagataggat aaattttcaa tgcgatctaa aagcgcctcc acatcaaaat ccaaatcttc
     2881 cattttttga ttttcgcaaa tcacacgcaa ttcattcaaa cattcactaa aaaaactcgc
     2941 atcaacttcg cttaaattta aagcttcaat aacaactttt tcaagctcaa aaatacgctc
     3001 tgccttactc caagcttctt ctaatttatc ttttttagaa agcttttttt taagtattaa
     3061 aagctcttca tactcaccta ttttaggatt aatgcttgaa attttttcaa tttgcgctct
     3121 agctagttct tttaattctt ctactttttt ttcttcttct aaaattgcat taagctcatt
     3181 agaaatttga ctataagcat t
//
LOCUS       DARGEM010000140         3176 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.140, whole genome shotgun sequence.
ACCESSION   DARGEM010000140 DARGEM010000000
VERSION     DARGEM010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.140"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            136..807
                     /gene="hsrA"
                     /locus_tag="SFZ78_001622"
     CDS             136..807
                     /gene="hsrA"
                     /locus_tag="SFZ78_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG8212459.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            920..1165
                     /locus_tag="SFZ78_001623"
     CDS             920..1165
                     /locus_tag="SFZ78_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG8212460.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1165..2625
                     /locus_tag="SFZ78_001624"
     CDS             1165..2625
                     /locus_tag="SFZ78_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8212461.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTYEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2622..>3176)
                     /locus_tag="SFZ78_001625"
     CDS             complement(2622..>3176)
                     /locus_tag="SFZ78_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212462.1"
                     /translation="SKNNNTYIMLQNKQNINLELSSINDKFGVRIRAIEQGKANIESV
                     PTTTANNSQELMPKPKSTSLEGYDYTNYILVMLILVILLIVLWWFKKTMVYKNNNVSR
                     DFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNVLLESVEIPEEQIIKHTEKTEKNF
                     DSFFEENKKRIQNLIEQRQKGKKS"
BASE COUNT         1173 a          456 c          452 g         1095 t
ORIGIN      
        1 aaaccccata taataaaaaa tgctacagtt ggggttaaat tgaaaaaaaa atattaattt
       61 ttttttaaag atatctaaac atttacttaa gctatgatat aattctttaa atttttctta
      121 ataaggatag aacaaatgag aattttagtt atagaagatg agattagcct aaataaaaca
      181 attatagaca atcttaatga atttggttat caaactgatt cttctgaaaa ttttaaagat
      241 ggagaatact ttatcggcat tagacattat gatttagttt tagcaaactg gactttacct
      301 gatggagatg gagcggaact tgttaacact attaagcata aatctccaag aacttcggtt
      361 atgattatgt cttcaaaaac agacaaagaa acagaaatca aagctttgaa agctggagct
      421 gatgattttg ttaaaaaacc tttagatttt gatattctac tcgcaagaat tgaagcaaga
      481 ctaagacttg gcggaaccaa tgttattaaa attgaagact tagttattga tccagatgag
      541 gaaaaaatta cttataaagg tcaagatata gaacttaaag gaaaaccttt tgaagtttta
      601 acgcacttag caagacattc ggatcaaatt gtatccaaag aacaactttt agatgccatc
      661 tgggaagaac ctgagctagt aactccaaat gttatcgaag tagctatcaa tcaaattcgt
      721 caaaaaatgg ataaaccatt aaatatatct accatagaaa cagttcgtcg tagaggatac
      781 cgtttctgct tccctaaaaa atcttaacaa ttttgcacct tcggtgcaaa aaatttatct
      841 ttatttctat ttttatattt tatttaagtt tggttattgt ataaactaaa attatttttt
      901 aaatttttga aaggttatga tgtctctttt aattacaaaa gactgcgtat gttgtgatgc
      961 ttgcagagaa gaatgtcctg atgaagctat ttatgaaaat agtccaattt atgtaataga
     1021 ccctgatctt tgttcagagt gcgttaatga tttttcagag cctgcctgta ttgttgcttg
     1081 cccatatgaa tgtatcattc ctgatcctga taatgtagaa actatagaag aattaaaact
     1141 caaacataga gatagagaat tttaatggca aaaaaaacag ccgttgttga tcttggctca
     1201 aactccatta gaatggtgat ttttgaaaaa acttctagat atggttttta tacaacttac
     1261 gaatacaaac gcaaagtaag acttggagaa aatgcttata ataatggcaa aattctccaa
     1321 gaagaagcca tgcaaagagc cgaagatgcc ttagcttttt tcaaacaatg cgctttaaag
     1381 cataagtgca aaaaaatatt tatagtaggc acatcagcct taagagatgc cccaaattca
     1441 aaaaatttca ttaaaagaat caaagataat ctgtctttaa atatacgctg tatagatgga
     1501 aaaagcgaaa gttacttagg tggtcttgca gctctaaatt tattaagtcc ttttaaagat
     1561 ggaaccactt tagacatagg tggtggttct agtgaattgt gtttaataaa aaataataga
     1621 attatttctt gcatatctct tgatattggc actgttaggc taaaagaatt gttctatgat
     1681 actggaaaaa tggattcttt agaagaattt ataaaaccaa ttttagaaca aattcctaaa
     1741 gaattttgca atcaaaacct tattgcaata ggtggaagct taagagcaat atctaattcc
     1801 atcatgcaaa aaaattccta tccactgaaa aatttacatg attttcgcta tatgctagat
     1861 gaagaaaaag ggcatatttt aaaaattttt aattcaaact tagactcttt aatcaatttt
     1921 ggcataaaaa aggatcgttt tgataccatt aaagagggta tatttatttt tttaaagatt
     1981 gcggaaaaaa taaaagccaa acaagttatc acgagtgggg ttggaatcag agaaggagtt
     2041 tatttgcaag atttacttcg tcctaaaatc acttttccac caaattttaa tcctagttta
     2101 aaatgtttac aagataaatt tttacaatca aaacaaaaaa ataaaactcc acattttgct
     2161 ctgcaaattt ttacaaccct taaaaatctt cataaactta acgataacta taagcatact
     2221 ttactaaatg ctgctaaatt atgccatatt ggagaatatt taaatttcta ttttgctaat
     2281 gaacactctg ctcattttgt actaggtgga ttaaattatg gattttcaca taaagaaaaa
     2341 gctttaattg ctagcattat taagcttaat ggaaaaaaag ttaaccctta taatcttgaa
     2401 ccctataaac aacttttacc caatattcat accatttcat ggcttaattt tattttgtgc
     2461 ctagctaaaa ctttaagcac aaatgaagat aagattgatt ttgcttttgc aaacaatact
     2521 ctttatatat atcaagaaaa caaaattctt aatttaccca aagatgagct caaaaaaatt
     2581 gcaaaaccag ctaccatagc attagcaatc aatcaaaaaa tttaagattt tttacctttt
     2641 tgacgctgct ctataagatt ttgaattctt tttttattct cttcaaaaaa agaatcaaaa
     2701 tttttctctg ttttttctgt atgttttatt atttgttcct ctggaatttc aacactttct
     2761 aaaagcacat tggaattacc tattatcatt gtataacgtt tattagcgtg atcaaaaaca
     2821 acaagttgat tatttttatc taaaaatctt tggaaaatca tagtaaaatc tctagaaaca
     2881 ttgttatttt tataaaccat agtcttttta aaccaccaaa gcactattaa caaaataact
     2941 aaaatcagca ttactaagat ataatttgta taatcatacc cttctaaact tgtacttttt
     3001 ggtttaggca ttaattcttg agaattattc gcagtagttg taggtacaga ttcgatattt
     3061 gcttttcctt gctctatagc tcgtattctt actccaaatt tatcattgat agaactaagt
     3121 tctaaattaa tattttgttt gttttgtagc ataatatagg tattattatt tttaga
//
LOCUS       DARGEM010000141         3118 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.141, whole genome shotgun sequence.
ACCESSION   DARGEM010000141 DARGEM010000000
VERSION     DARGEM010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.141"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..294
                     /locus_tag="SFZ78_001626"
                     /pseudo
     CDS             1..294
                     /locus_tag="SFZ78_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            406..1353
                     /gene="arsP"
                     /locus_tag="SFZ78_001627"
     CDS             406..1353
                     /gene="arsP"
                     /locus_tag="SFZ78_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
                     /protein_id="HEG8212463.1"
                     /translation="MQSFLNTFKEFLYLFTELSVLFIAISFLVSIINQKYEGIFKKQL
                     AGDKISSYFKAIFLGALTPFCSCSTIPLLRAFLEAKVKLSVALAYLFTSPLINPIIFS
                     MLFITFGLKLSLTYVVFLVFLIFIVSFVFSKFKEESFLKHIPKNTKSNIFTQTTHNPS
                     NFIFKQKSCCANTQDKPKNITINYKELFKESLKNYKKLLPYIVVAVFIGAFIHGFIPQ
                     EILQKYLNGNEILSIVLAAFLGIFLYLRVETIIPIGLALLQMGISQGVIMSFLIAGAG
                     CSLPELILLKQMFKIKFLFLFVMIILGVAISFGIFINLI"
     gene            1363..1686
                     /locus_tag="SFZ78_001628"
     CDS             1363..1686
                     /locus_tag="SFZ78_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8212464.1"
                     /translation="MQKFLTIISAINDESRVLILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHLDLFENIKNLELKNAIKKNENII
                     TQICP"
     gene            complement(1694..2125)
                     /locus_tag="SFZ78_001629"
                     /pseudo
     CDS             complement(1694..2125)
                     /locus_tag="SFZ78_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            2204..>3118
                     /locus_tag="SFZ78_001630"
     CDS             2204..>3118
                     /locus_tag="SFZ78_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8212465.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTILKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVANTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKAHGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIFKAAYIQVIALIVMISIS"
BASE COUNT         1102 a          431 c          396 g         1189 t
ORIGIN      
        1 cattctcttt gtcctattga aaccacgctt aatttgatag gaaataaatg gaaaatttta
       61 attatttgag atttgttgca agggactaaa agatttggag agttaagaaa aagcatttca
      121 tttacaaaaa atcaaaacat ctctcaaaat gtccttacac aaaatttacg agaattagaa
      181 gaagcaaaac tgatcaaacg caaagtttac gcagaagttc ctccaaaggt tgagtactta
      241 cttatatctt taggcaatag tttagaatcc atcttaaaaa gtcttgagaa ttagggaaat
      301 agctataaaa tatcgtttaa gaaacaaatt aatatatcaa tatatatatt gatatattaa
      361 tttatatatg ttatattttt ggaaatattt ttaaaaggat aaaaaatgca gtctttttta
      421 aatactttca aagagttttt atatctattt actgagcttt ctgtactttt tatagctatt
      481 tcttttttag tttctattat caatcaaaaa tacgaaggaa tttttaaaaa acaacttgct
      541 ggtgataaaa tttcaagtta ttttaaagct atatttttag gtgctttaac gccattttgt
      601 tcctgttcta ccataccgct tttaagagct tttttggaag cgaaagtaaa acttagcgta
      661 gctttagctt atctttttac ttcacctctt attaatccta tcattttttc catgcttttt
      721 ataacttttg gtttaaagtt aagtttgact tatgtggttt ttttggtatt tttgatattt
      781 attgtttctt ttgttttttc caaatttaag gaagagagtt ttttaaaaca tatccctaaa
      841 aatacaaaat caaatatttt tacccaaacc actcacaatc ctagcaattt tatttttaaa
      901 caaaaatcat gctgtgcaaa tactcaagat aagcctaaaa atataacgat aaactataaa
      961 gaattattca aagaaagttt gaaaaattat aaaaaattat taccctatat cgttgtggca
     1021 gtttttatcg gtgcttttat tcatggtttc attcctcaag aaattttaca aaaataccta
     1081 aatggcaatg aaattttaag cattgtatta gcggcttttt taggaatttt cctttattta
     1141 agagtagaaa ctattattcc tataggctta gcacttttgc aaatgggaat ttcccaagga
     1201 gtgattatga gttttttaat cgctggtgct ggatgttctt tacctgagct tattttactc
     1261 aaacaaatgt ttaaaataaa atttttattt ttatttgtta tgattatttt aggcgtggct
     1321 atatcttttg gaatttttat taatttaatt taaggaaata aaatgcaaaa atttttaacc
     1381 attatttcag caatcaatga tgaaagtagg gttttgattt tgcatcatct tttaagatac
     1441 aaagaacttt gtgtttgtga tctacaagag ctcttaaaca tgggtcaatc aagactttca
     1501 agacatttaa aaattttaaa agatgcagga tttttatatg tcaagcgtaa gggaacttgg
     1561 gcgtattatg ggattaataa tgagctttta aagctgcatt tagatctttt tgaaaatatc
     1621 aaaaatttag agcttaaaaa tgctattaaa aaaaatgaaa atattattac ccaaatttgc
     1681 ccttaatata aaatcaaccc ttaaacttat gcaatttatc acaaggttga tagtccttgc
     1741 tttctggatt aaacccatcg acttcatttg caagcatttc ttcataaatt tttatctttt
     1801 tgcttaaaac tttttcactt tcttttaatg ttttaatctg gttttgtaat tttttctttg
     1861 tttgctttaa catctcttgt ctctctttgg cagtttttat acccaaagag caaagtttta
     1921 tataatgttt gatttgttct attggcatac ctgaaattcg aaaccattct atccattttg
     1981 cccattctat atcgcttttt gaaaaatatt tcacactatt ttcatctttt tgaacaaaag
     2041 gaaacaaacc tttttagccc aaaatcttaa agtatgagca ctaatttttg tttctttttc
     2101 tacctctttt catagtataa gccatatttt ctccttttta aaataaaaat aaaaatttat
     2161 ttttattttt ttgtgataaa ataatagcca aattattagt tttatactaa aaataacaaa
     2221 aattaaaagg aaaataatga atagtattaa aatcaaactt tctctcattg caaatttaat
     2281 tgcaattttt gccttaattg ttctaggtat tgtaagtttt tattttacaa aaacctcact
     2341 atatgaaagc actcttaaaa atcaaactga tctacttaaa gtcacacaat ctaccgttga
     2401 agatttccgt tccacaaatc aatcttttac tagagcttta gaaaaagata tcgcgaactt
     2461 accttatcaa tctttaatca ctgaagaaaa tattattaac aatgttggtc caatattgaa
     2521 atattatcgt catagtataa atgcactaaa tgtttattta ggtttaaaca atggaaaagt
     2581 tttacttagt caaaaatcta atgatgcaaa aatgcctgaa ttacgtgatg atttagatat
     2641 aaagacaaaa gattggtatc aagaagcttt aaaaacaaat gatatttttg ttacaccagc
     2701 atatttagat acaattttaa aacaatatgt aataacgtat tctaaagcta tttataaaga
     2761 tggcaaaatc ataggagtac tgggtgtcga tataccatca gaagatttgc aaaatttagt
     2821 tgcaaacact cctggaaata cttttttatt tgatcaaaaa aataaaatat ttgcagcaac
     2881 caataaagaa ttattaaatc catccattga tcattctcct gttctaaatg catataaagc
     2941 tcatggtgat aacaacttct tctcttataa gttaaataat gaagaaagac ttggagcttg
     3001 tactaaagtc tttgcttata cagcttgtat taccgaaagc gctgatatta taaataaacc
     3061 tatatttaaa gcagcatata tacaagttat agccttaatt gttatgatat ctattagc
//
LOCUS       DARGEM010000142         3069 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.142, whole genome shotgun sequence.
ACCESSION   DARGEM010000142 DARGEM010000000
VERSION     DARGEM010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.142"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(189..1541)
                     /locus_tag="SFZ78_001631"
     CDS             complement(189..1541)
                     /locus_tag="SFZ78_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEG8212466.1"
                     /translation="MHNLNFSHPFLNKLIAYKDLNCLVYKDKTYSYLELLLEVEKYIG
                     QLNNLKGIIGILGDYNLKSIALLLACIEKRLIVAPFLKLKNQDFKELEDKIYEGQIDY
                     LYDEGRFIPYQSKQLKHNLIYTLQNHSSSGLILFSSGSTGKPKAMVHNLDVILNVYQG
                     KKPKVMNIVLFLMFDHIGGLNTLFNVLGMGACGIALEDRKNIEALAQNIQKYQVSLLP
                     ASPSLLNLILMSGVKEKYDLNSLKLITYGTEKMSDSLLNRLKLEFPKVRFHQTFGTSE
                     VGIAQTKTKDNMIKLEGMAYKIINNELYLKSKTQSLGYLNADNSVFDEEGYFATGDLV
                     ELYKENGEEYIKIIGRSKELINVGGEKVVPQEVEGVILELDYIQDCLVYAKANTITGQ
                     SVCVEVLLKPNIEFTNLELKKQLRMYCKDKLANYKIPTQVEIVDGLELSQRFKKVRKG
                     "
     gene            complement(1534..2265)
                     /locus_tag="SFZ78_001632"
     CDS             complement(1534..2265)
                     /locus_tag="SFZ78_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8212467.1"
                     /translation="MQKVILITGTRKGIGKQLSEHYLSLGHTVCGCSRGASSINHINY
                     RHFELDVSDEEKVVSMVRAVRKEFSRIDVLLNNAGIASMNHILTTPYKSVNNIFNTNV
                     FGTFLFTREVAKVMGNIYKKNYKNTKTMPFRIVNFTTVATPLRLEGEAIYAASKAALV
                     NLTQVCAKELSEFGITVNAVGPTPVPTDLIKNVPQNKLDVLLNQQAIKRFGEFEDVLN
                     VIEFFLNEKSGFITSQVVYLGGVNA"
     gene            complement(2267..2560)
                     /locus_tag="SFZ78_001633"
     CDS             complement(2267..2560)
                     /locus_tag="SFZ78_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212468.1"
                     /translation="MEEKIISIILNVLKNSADDYEIEELKSANKDTKLYSGLGGLLDS
                     LALVSLITDLEESLATELNIEITLADEKMMSLRNSPFKDVQTLAQYIASQIKA"
     gene            2686..>3069
                     /locus_tag="SFZ78_001634"
     CDS             2686..>3069
                     /locus_tag="SFZ78_001634"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212469.1"
                     /translation="MNKNIVLLGASNSRIPGGLQAGLNQKNINLYNLSIGGTDSIHKI
                     YELKRKENKDLIQNADLIILEVNLMDVTMSFCYKNLDFKIIKYINYLYEQLYLLKKKI
                     LVLLLFDLRCINDNKNKSANFITKIH"
BASE COUNT         1097 a          474 c          347 g         1151 t
ORIGIN      
        1 ccttgccttt agttttttgc atagattata tcgaagcact aaaaattaaa aagcatttat
       61 catatagata tggtaagatt gtgctctatt gttttaaata ttggtataaa ggtaaaatat
      121 ttgctattcc ttatcttttg ttaaaagaat ataaagaatt taaaaaaaat aaaaaataat
      181 cttacatttt aacccttcct caccttctta aacctttggc ttaattctaa tccatctaca
      241 atctcaactt gagttgggat tttataatta gccaatttat ctttacaata cattcttaat
      301 tgttttttga gttcaaggtt tgtaaattct atatttggtt ttaaaagcac ctctacacaa
      361 acactttgtc ctgtaatagt attagctttt gcatacacta agcaatcttg tatatagtca
      421 agttctaaaa tcaccccttc aacttcttga gggacaactt tctctcctcc tacatttata
      481 agctctttgc ttcttcctat gatttttata tattcttctc cattttcttt ataaagctca
      541 actaaatctc ctgttgcaaa atatccctct tcatcaaata cactattatc agcatttaaa
      601 taacctaagc tttgggtttt actttttaag taaagctcat tattaataat cttataagcc
      661 ataccttcta atttaatcat attatcttta gttttagttt gagctatacc aacttcactt
      721 gtgccaaatg tttgatgaaa tctaacttta ggaaattcca attttaagcg attaagtaaa
      781 gaatcactca ttttttctgt cccatatgta ataagtttta aagaatttaa atcatacttt
      841 tcttttactc cactcattag tataagattt agtaaacttg gacttgcagg cagtaaagaa
      901 acttggtatt tttgtatatt ttgcgctaaa gcttcaatat tctttctgtc ttctaaagct
      961 ataccacaag cacccatacc taaaacatta aataaagtat ttaaaccacc aatatgatca
     1021 aacattaaaa acaaaacaat attcataacc ttaggttttt taccttgata aacatttaaa
     1081 ataacatcaa gattatgaac catagcttta ggttttccag tgcttccact tgaaaaaaga
     1141 atcaaaccac tagatgaatg attttgaaga gtatagataa gattatgttt taactgctta
     1201 ctttgataag gtataaacct accttcatca taaagataat ctatttgccc ctcatagatt
     1261 ttatcttcta attctttaaa atcttgattt tttaatttta aaaaaggagc aacaattaat
     1321 cttttttcta tacaagctaa caataaagct atacttttta agttgtaatc tcctaaaatt
     1381 ccaataatgc cttttaaatt atttaattga ccaatatatt tctcaacttc tagtaaaagt
     1441 tccaaataag aataagtttt atctttataa actaaacaat ttaaatcttt ataagctata
     1501 agtttgttta aaaaaggatg agaaaaattt aaattatgca ttaactccac ccaaataaac
     1561 tacttgcgag gttataaaac cacttttttc attaagaaaa aactcaatga catttaacac
     1621 atcttcaaat tccccaaagc gtttaatggc ttgctgattt aataaaacat cgagtttatt
     1681 ttgaggaaca tttttaatta aatccgttgg aacaggtgta ggaccaacag catttacagt
     1741 aataccaaat tcacttaatt ctttagcgca cacttgagtt aaattaacta aagcagcttt
     1801 agatgctgca tatatggctt caccttcgag tcttaaagga gtggcaacag tagtaaaatt
     1861 aactatacga aaaggcatgg tttttgtgtt tttataattt tttttataaa tattgcccat
     1921 aactttagca acttctcttg taaataaaaa agtaccaaaa acattggtat tgaaaatatt
     1981 attaacgctt ttataaggcg tggttaaaat atgattcata gaagcaatgc ctgcattatt
     2041 taacaataca tctatacgag aaaattcttt acgcacagca cgaaccatag aaactacttt
     2101 ttcttcatcg cttacatcaa gctcaaaatg tctataattt atatgattta tacttgaagc
     2161 acctctagaa catccacaaa ctgtatgacc taaagaaaga taatgctcgc ttaattgttt
     2221 acctatacct tttcttgttc ctgttataag aatgactttt tgcattctat gccttaattt
     2281 gacttgctat atattgagct agtgtttgaa catctttaaa aggagagttt ctcaaactca
     2341 tcattttttc atctgcaaga gttatttcta tattaagttc tgtagctaaa ctttcctcta
     2401 aatctgtaat taagctaaca agagctaaag agtctaaaag acctcctaat ccgctataaa
     2461 gtttagtatc cttattggct gattttaatt cttctatttc ataatcatca gctgaatttt
     2521 ttaaaacatt taaaattata gaaattattt tttcttccat aaaaattttc tccttgatat
     2581 caaagataat ttctatatta tagatctatt tataaaatta tccttgtata tttttaagta
     2641 ttatattata taattattaa taagtttaat tgtggaaata aaattatgaa taaaaatata
     2701 gtattattag gagctagcaa ttcaagaatt cctggtggac ttcaagctgg cttaaatcaa
     2761 aaaaatatta acttgtataa tctatctata ggtgggacag attctataca taaaatttat
     2821 gaacttaaaa ggaaagaaaa taaagatttg attcaaaatg ctgatttgat tatacttgaa
     2881 gtaaatctaa tggatgtaac gatgagtttt tgttacaaaa atcttgattt taagataatt
     2941 aaatatatca attatcttta tgagcaatta tacttattaa aaaagaaaat tttagtttta
     3001 ttactttttg acttaagatg cataaacgat aataaaaaca aaagtgctaa ttttattaca
     3061 aaaattcat
//
LOCUS       DARGEM010000143         3051 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.143, whole genome shotgun sequence.
ACCESSION   DARGEM010000143 DARGEM010000000
VERSION     DARGEM010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.143"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            92..1156
                     /gene="mqnE"
                     /locus_tag="SFZ78_001635"
     CDS             92..1156
                     /gene="mqnE"
                     /locus_tag="SFZ78_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG8212470.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1166..2485
                     /locus_tag="SFZ78_001636"
     CDS             1166..2485
                     /locus_tag="SFZ78_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG8212471.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2499..2942
                     /locus_tag="SFZ78_001637"
     CDS             2499..2942
                     /locus_tag="SFZ78_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG8212472.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
BASE COUNT         1045 a          465 c          517 g         1024 t
ORIGIN      
        1 tatcttttat tttggctttt tctataaact ctttttcagt aagcaaaaat tataatgctt
       61 tatttaaaaa cagcaaaaga gtaaaattaa aatgaaaaat ttaatcacca aactagaaaa
      121 tgaagaaaga ttaaaccaag aagaagccaa tgcactttgg gatctagatc tttttacctt
      181 aggcaaatac gctcacaaaa aacgcactaa acttcatgga aaaaaagtct attttaatat
      241 caatcgccat atcaacccaa ctaatatctg tgcagacacc tgtaaatttt gcgccttttc
      301 agcgcaccga aaaaatccta atccttattt gatgactcat gaagaaatca tgaaaatcgt
      361 cgatgaaact gtaaaacgag aaaccaaaga agtgcatatc gtttcagctc acaacaaaga
      421 tacaacttgg caatggtatt tagaaatttt taaaatgata aaagaaaaat atcctaatct
      481 tcatgtaaaa gctatgactg ctgctgaaat tgatttttta catcgtcgtt ttaaaatgag
      541 ttatgaagaa gtgatagaaa aaatgcttga atacggcgtt gattccatgc caggcggtgg
      601 agctgaaatt tttgatgaag aagtgcgtaa gaaaatttgt catggaaaag ttagcagtga
      661 aaattggctt aaaattcata aactttggca tgaaaaaagc aagcaaagta atgctaccat
      721 gctttttgga catatagaag aaagacatca caggatcgat catatgttaa gactgcgtga
      781 tcttcaagat caaaccggtg gatttaatgc ttttatccct ctagtttggc aaagggataa
      841 tagctttata caaactgata aaatcatgga tagtgaagaa attttaaaaa ccattgccat
      901 ttctcgttta gtgcttgata atatcaaaaa tatcaaagct tactgggcaa caatgacttt
      961 aaatttagcc atggtagcac aagaatttgg agctaatgat ttagacggca ctatagaaaa
     1021 agaaagtata caaagtgcag gtggtgcaaa gtccgccaaa ggcacaagtt taaaaacttt
     1081 tatcgatatg ataaaaactt caaatcttat tcctgtagaa cgcgatagtt tatacaatga
     1141 gctaaaaacc tactaaggag aaaaaatgag cttttttaaa ctcaaagaaa acaatacgag
     1201 ttttaaaacc gaagttatag caggacttac tactttttta gctatggttt acattatccc
     1261 cgtaaattct agcatagtag gaaatacagg aatgcctata gaagctttaa tcaccgcaac
     1321 agctttaatt accatagttg caagtgcttt taatgctttt tttgccaata ctcctgtagc
     1381 tatgagtgta ggaatgggtt taaatgctta ttttaccttt gcggtttgtt taggtcaaaa
     1441 catagcttgg caaagtgcct taggagctgt ttttatttca agtattattt ttctcatact
     1501 ttcttttacg cattttcgcc tttgggtaat ccgcaatatc ccaaaagatt tacgccttgc
     1561 aatttgtgcg ggcataggtt gttttattgc atttttaggc ttaagtcaaa tgggtgtgat
     1621 aatgcataat aaagatacct tagtcagcat aggaaatttc aaaagccctc atgtgctttt
     1681 tggaattttc actctagctt taatcatctt tttttgggct ataaaacttc gcggagcttt
     1741 tattttgggg gtattagcaa gctccattat tgcttggatt ttccatttag acaatgcaag
     1801 ttttcctgtg caaatctttt cttggccaaa ttttagcatg gaaaatggtt taggagccat
     1861 ctttttacaa cttgatatca aaagtgcctt aaatattact atgataccta taattcttac
     1921 tttttttatc actcaacttt ttgatagcat aggaactatc acaggtgtgg gtgaaagagg
     1981 aaagattttt gatgatccca aaaatggaga aaaaaaacta agcaaaacct taatggcaga
     2041 tgcaacagga tcagccttag gagctatgac aggcacttct acagttacag cctttgttga
     2101 aagcactaca ggggttgaaa gcggaggaag aactgggctt acagctttag ttgtagctat
     2161 ttgttttgct tttacacttt ttttactgcc actttttaaa gccattcctg caaacgcaat
     2221 ataccccgta cttgtaatgg ttggaatttt aatgtttatg gaagttaaaa atatagattt
     2281 taaagatagt gctatagctg tagcaagctt ttttactatt atcatgatgc cttttactta
     2341 ctccatcacc acaggttttg cttttggttt tctttcttat ttacttgtac gaatttttaa
     2401 acgcgaatgg gataaaatca atcttggcat tatagtttta agtttattat ctttgggtaa
     2461 ttttttactt atggcactac aataaataag gatatataat gatattttac tcctatgaag
     2521 aatttaaaga agatgtaaaa attcttgcta aagaaattaa aaaagatttt aaccctgatg
     2581 cacttttagc tatagcaaga ggggggatga gtttaggaca ctctttagca gtggctttaa
     2641 aaacgcgtca actttttgct ttaaactcaa ttcattacga taatacgaaa aaacttgata
     2701 ctattgaaat ttttaacatt cctgatttaa gcaagcacaa aaaaattcta ctcattgatg
     2761 atatagtaga tagtggagaa agtttagcag aaataaaaaa agttttgctt gaaaaatttc
     2821 ctcatataga acttaaaatt acaaccattt tttacaaaaa aaccgctctt ttagagcctg
     2881 attttaaagt aaaagaagct actgaatggg tggattttta ctgggatata aaccttgatt
     2941 aaaaatttgc tataatttta cttttaaaat ttttaggagt ttttgcttga gaataaaatt
     3001 tatatctttt attttaattt tttttgctat ttttgctttt gctaaagaac a
//
LOCUS       DARGEM010000144         3035 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.144, whole genome shotgun sequence.
ACCESSION   DARGEM010000144 DARGEM010000000
VERSION     DARGEM010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.144"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..187)
                     /gene="rpsO"
                     /locus_tag="SFZ78_001638"
     CDS             complement(<1..187)
                     /gene="rpsO"
                     /locus_tag="SFZ78_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG8212473.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQ"
     gene            362..772
                     /locus_tag="SFZ78_001639"
     CDS             362..772
                     /locus_tag="SFZ78_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG8212474.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIIKNNGKK"
     gene            759..2933
                     /gene="flhA"
                     /locus_tag="SFZ78_001640"
     CDS             759..2933
                     /gene="flhA"
                     /locus_tag="SFZ78_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG8212475.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVASVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
BASE COUNT         1016 a          429 c          553 g         1037 t
ORIGIN      
        1 tttgacctac aagttttaga agtcctaatc ttgatgaaaa gtcttttttg taaattttta
       61 aatgttctgt aagttctgca attcttgcag ttaaaagagc tacttgaact tctgttgaac
      121 cagtatcacc tggtttttta gcgaatttcg caactatttc tgcttttttg gccgaatcta
      181 aagccatgat agacctcctg attggtaaaa taataaaatt aaagaactgt aattttatct
      241 taaaaagcaa aaaataaact gaatttatct tttttagaag gttttgtcaa aatttaagtc
      301 tttttctaag aattatttat tataattaca gctatttctg tagttataac aaggagaatc
      361 tgtgctattt accaaagcta gcgaatacgc tttactttct ttaatttata tttctcaaaa
      421 agaaacacct caagatgtag attctttagc tttagagctt gatattccta aaagtttttt
      481 agctaaaatt ttacaaactt tagctaaaga tggcttgtta aaatccttta aaggggcaaa
      541 aggtggtttt gttttaatca aagaaccaag tcaatatact ataaaagaaa ttgttaatag
      601 tgctgaaaaa aaggatatca gtgtatttga atgcagtggt ggcacttgtc caaataataa
      661 agaagaaaat tgcaccttaa tgcctatgtt agtaaattta caaaataaag tagatgaatt
      721 tttagattct attactttag aagatattat aaaaaataat ggcaaaaaat aaaatagtcg
      781 atttagtttt tcctttcttg gggcctttaa tcgctcctgt tttaaaagct aaaagcttga
      841 ctattgttgg ttttttagtt tgtattttag ctattattat agttccttta ccaagcccta
      901 ttttggactt tttcttggct ttaagcatag ctttatcggt attaattatt ttaatttcta
      961 tttatatacc caaaccgaca gatttaacaa cttttccaac tttaatcttg attatcactt
     1021 tatttaggct ttcattaaat atagctacca caaggatgat tttaagcgaa gggcaaaacg
     1081 gccctgaagc tgtgagtgag attatagcag catttggaga atttgttgtt ggtggaaata
     1141 tggtcattgg cgtgattgta ttttgtattt tagtattgat taatttcatg gttgtaacaa
     1201 aaggtagtac aagggtttct gaagtacaag caagatttac acttgatgcg atgccgggta
     1261 aacaaatggc tattgatgcg gatttaaatg caggacttat tgatgaacaa accgctagag
     1321 caagacgtca agaagttatt gctgaggcaa acttctatgg tgcaatggat ggttcttcta
     1381 aatttatcaa aggagatgct gttgcaggaa ttatcataac tattataaat atcataggtg
     1441 gttttttaat aggatctttt cagcacgata tggctttaag cgatgctgct tctacctata
     1501 ctattttaac cataggtgat ggacttgtat ctcaaattcc agggcttatt acttctactg
     1561 caaccgctat aattatcact cgtgcaagca aagatgagga aaattttgca gaaggaactt
     1621 taactcaact tttaagcgaa tatcgcacgc ttttaatagt aggttttgta ctttttatct
     1681 ttgcgttagt gcctggtttg ccaactttat ccttgggctt tatggcttta gtatttttaa
     1741 gccttggcta tcttaccaag caggttaagg aaggtaaaat tgatataact acagttaaaa
     1801 aaagcaaacc aagtgccgca gttgcatctc aaagtggagc aggtgggaca acggcagcgc
     1861 ctgctaagaa aagcgaagaa gaaattctca aagaagaaga gcacaagatt aacgatatac
     1921 tcaaagttga aattttagaa cttgaacttg gatacggact tattaagctt gctgaaaacg
     1981 aacttacaga aagaattcgc tcaatgagaa gaagtattgc tgaaagttta ggatttttaa
     2041 tgccaaaaat aagaataaga gataatttaa gacttaaacc aaatgagtat agttttaaac
     2101 tcaagggcgt gtctatagca agtgctgaaa tttatccgga taaatattta gccatggata
     2161 gtggttttat cacagaagag atagaaggga ttgctacaaa agaacccgct tttaactctg
     2221 atgcactttg gattgatgcg aatttaaaag atgaagcaac attaaatggc tatatagtaa
     2281 tagatcctgc aagtgttatt tcaacacata tgagcgaact tatcaaagcg cacgcaagcg
     2341 aacttctcac acgccaagag gtacaaaatc ttcttgataa ggttaaaaat gattatccaa
     2401 tcatcgtaga aggtgcttta ggtgttgcat ctgtaagtct tattcaaaaa attctcaaag
     2461 acttgcttaa gcatcacata ccaattaaag atatgcttac tattttagaa tctgtaagcg
     2521 atatagcaga agtaagcaag agttttgata tgattattga acatgtaagg gcgtccttgg
     2581 ctaggatgat tacaaatatg tatttagatg ataaaggaaa tttggatatt tttatcttag
     2641 actctgctag ttctgcggtt ttaatggaaa atgtacaatt tagagatgga agttatcact
     2701 tgcctttaag tgtagctcaa acaggtactt tagtagatac tctaagggct gaagttgccg
     2761 cagtagcaaa tggtcgtatc aagcctttta tactttgcgt tgaaccgcag cttagaaaat
     2821 tcattgctga tatttgttat aattttagca ttaatatagt agtgttaagt tttgcagaaa
     2881 ttgcagaaaa tacaaatttt aataccgagg gtattattag gatagaactt taaggaatat
     2941 aatgaaaatt tatcatcttt cacatacaga tcttgatggc tatgcttgtc aatttatagt
     3001 aaatttttat tttaaaaatg tgaaatttta taatt
//
LOCUS       DARGEM010000145         3006 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.145, whole genome shotgun sequence.
ACCESSION   DARGEM010000145 DARGEM010000000
VERSION     DARGEM010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.145"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..145
                     /locus_tag="SFZ78_001641"
     CDS             <1..145
                     /locus_tag="SFZ78_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEG8212476.1"
                     /translation="NVYFCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKGIDAR
                     KSL"
     gene            126..878
                     /locus_tag="SFZ78_001642"
     CDS             126..878
                     /locus_tag="SFZ78_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8212477.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNTKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            946..2283
                     /gene="ffh"
                     /locus_tag="SFZ78_001643"
     CDS             946..2283
                     /gene="ffh"
                     /locus_tag="SFZ78_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG8212478.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2348..2575
                     /gene="rpsP"
                     /locus_tag="SFZ78_001644"
     CDS             2348..2575
                     /gene="rpsP"
                     /locus_tag="SFZ78_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG8212479.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2578..2820
                     /locus_tag="SFZ78_001645"
     CDS             2578..2820
                     /locus_tag="SFZ78_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG8212480.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            2813..>3006
                     /locus_tag="SFZ78_001646"
     CDS             2813..>3006
                     /locus_tag="SFZ78_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8212481.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFE"
BASE COUNT         1143 a          318 c          583 g          962 t
ORIGIN      
        1 aaatgtatat ttttgtgaaa aattaaaaga tttaaatgat aaaattcatt atttaaattt
       61 aaaagctaaa atttccaaaa aagaaaattt agatcttatc atacaaacta tacaaaaggg
      121 aattgatgca agaaaaagct tataaactct tagctttgca agaaaaaatt tcaaatcgtg
      181 aagctaaaga tttgattgat aagggttgtg ttttttcaca tggaaaaaaa gttgtggttg
      241 ctagagcttt gatgagcgat aaggcaagat ttaatgtgat aaaagctaaa aatcctcaaa
      301 ttatttttga agatgataag attattgcta ttaataaacc ttatgcttat gtgagtgaag
      361 atttagagaa aaaatttaat accaagcttt taaatcgttt agacaaagaa acaagtggtg
      421 tgattttgct ttgtaaagat gaagatttta gaaagctttg tatagaagaa tttaaaaaac
      481 acagggttta taaaagttat attgcagttt tagatggggt tttggctgaa gaggttgaag
      541 tgaatgaacc tatttttact ataaaagtaa aaggcggggc gttaagtaaa gtttcaaaag
      601 atggtttaag tgctttaagt atcattactc ctatcatgat gcagtcaaaa aaaaccttag
      661 caaaaatagt tattcaaaca ggtagaactc atcaaatcag agtgcatgct aaatttataa
      721 aacatggcgt tgtaggtgat gaaaaatatg ctaaaatttc aagcgataga atgtatttac
      781 atagttatga aattaaaatt tttgattatt attttaaggc tgagctagat aatagttttg
      841 caaaagttgg ctttgagata aaaaatttag atttttaaag ccatttaaga aaaaattttg
      901 tataatgcaa ggtttaattt aaaaatttta tagaaaggtg ataaagtgtt tgagttagtc
      961 agcgaatctt ttaaatcagc gattaataaa ttacgttttg ttgatgatga aaaagcactt
     1021 aagaacgctt tagaaacctt aaaaaaagct cttttaaaag cagatgttca tcataaggta
     1081 actaaagagc ttttgacttt aatagaagaa gatgtaaaac aaaatggcat aggtcaaaaa
     1141 caatttttaa atgccattaa aataaattta gaaaatattt taagtgtcaa tggtaagaat
     1201 caaggttttg tttttacttc taaaccccca acagtagttc taatggcagg tttgcaagga
     1261 ggcggtaaga ctacaagcac tatcaaactc gcaaattatt taaaattacg caataaaaaa
     1321 gttttagttg cagcttgtga tttgcagcgt ttagcagcag tggagcaact aagacaactt
     1381 tgtgaagcta atgaaattga acttttcttc atagaaaatg aaaaagatcc tattagggtt
     1441 gctaaagagg ctttaaaaaa ggctgaaagt tctatggtgg atgttttgct tgtggatact
     1501 gctggacgtt tggctataga tgaagctttg atggatgagt taagagcagt taaggatgtc
     1561 ttaaatcctg atgagatttt ttatgttgct gatgcaatga gtggtcaaga tggggttaag
     1621 accgctgcta gttttaatga agttttaggt atcagtgggg taattttatc aaaatttgat
     1681 gcagatacta aaggtggagt agccttaggt atagcaaaac aaatcggtat tcctttaaga
     1741 tttattggtg tgggtgaaaa agtagcagat ttagaagttt ttataccaga tcgtatagta
     1801 agtcgtatta tgggtgaggg tgatttggca actttagctg aaaaaactgc tgcgattatt
     1861 gatgaaaaag aggctaaaaa actcaatcaa aaaattaaaa aaggtgaatt taattttaat
     1921 gattttctta atcaaatgga aagtattaaa aaattaggaa gtatgaagtc tttaatcggt
     1981 atgataccag gacttagcgg aatggcaaat gtggtaaaag atatagattt ggataattct
     2041 aaagaaatca tacgcattaa agcaatgatt tcttcaatga ctccaaaaga aagagaaaat
     2101 cctgatttat taaataatgc tagaaagcgt cgtatagcag agggagcagg tctttctcag
     2161 gtagaagtca atcgtttttt aaaacaattt agcaatgcag caaaacttgc aaaaagattt
     2221 tcaggtaaaa aaggaatgga aagtttaaca cagatgatga gtcaagctag aaggcaattt
     2281 taaattttat ttataaatac tttttatagt atctataaat aaaattttta atttttaagg
     2341 agtataaatg acagttatta gacttacaag aatgggtaga accaaaagac cattttatcg
     2401 tattgtagtt acagacagta gaaaacgtcg tgatggtggt tggatagaaa gtattgggta
     2461 ttataatcct atggtagaac ctgaggtaat taaagttgat gcagagcgtt tagcttattg
     2521 gaaaagtgtt ggtgcaaaac ttagcgataa agttgcttct atcactagca aataatcatg
     2581 gtagagaatt ttcttagaga atacgcaaaa ttaattgcag attatcctga acagattgat
     2641 actcaaaaaa ttgaattaag tgaaaatttt tttgagattg ttctttttgc acataaggtt
     2701 gatacaggta agcttatagg taaaaatgga aaaatgatca atgctataaa aaccgtaatc
     2761 tctgcttata agagcaagga tgcaagttct tatagagtaa cggtaaaagc acttgagtga
     2821 aaaagatttt gttcaagttg caaaacttgg taaaactgtg ggtcttaagg gttatgtaaa
     2881 attgcataac ctgagcgact tttcttctca atttaaaaaa gatgctactt tttttataaa
     2941 aaacaccaaa gaaatgttaa agattaagca ttataatgca aacaattcta ctgttttatt
     3001 tgaaaa
//
LOCUS       DARGEM010000146         2904 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.146, whole genome shotgun sequence.
ACCESSION   DARGEM010000146 DARGEM010000000
VERSION     DARGEM010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.146"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..911
                     /locus_tag="SFZ78_001647"
     CDS             <1..911
                     /locus_tag="SFZ78_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8212482.1"
                     /translation="FLDLELFWTKMAIGFGVCLLFVFILMLLLGRRIEKNFNKILDFL
                     DSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQLASVI
                     SAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLNALTHKLNFVFN
                     LNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQVIINLLSNALK
                     YSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLFLVKKIL
                     NIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            915..2846
                     /locus_tag="SFZ78_001648"
     CDS             915..2846
                     /locus_tag="SFZ78_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8212483.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYTFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
BASE COUNT         1157 a          326 c          515 g          906 t
ORIGIN      
        1 gttttttaga tttagaactt ttttggacaa aaatggcaat cggttttgga gtatgcttgc
       61 tgtttgtttt tattttaatg ttgttgttag gtagaagaat agagaaaaat tttaataaaa
      121 ttttggattt tttggattct ataggggatc ataaagttgt tatattagaa aaaggaatgt
      181 ttaaagaatt taatttacta aatgagaaac ttttaaaaac taaggataaa attctaaaga
      241 atacccaaaa aaataaaaaa caaagcgata aaatcacttt aaaaaatact cagcttgcta
      301 gcgtgatttc tgctatttct catgagctta aaaatccatt aagcgtgatt gatcttagct
      361 tagagatgct aaaagatgag aaattggaag ataaaaaatt aaaaaaggaa ttactagaaa
      421 aaatttcacg tcaaagcgtt aaacttaatg ctttaaccca taagcttaat tttgttttta
      481 atcttaatag tgaagccttg cagatgcaag aatttgatct tttttctcta tgtgaaaaaa
      541 tcactaaaaa cccaggcttt gaaagagttg cattgcaagg taaaagcacg aaagttaagg
      601 ctgatgaatt tttaatcgag caagtgatta taaatttgct ttctaatgct ttaaaatata
      661 gtcaaaaaga agtcatttta acggcaagag atcaaaagat aatagtgcaa gattttggaa
      721 aaggcataga agaagataaa ataaaattga ttacaaaaaa attttataaa attgatgtaa
      781 aaagtgataa ttcttttggt ttgggacttt ttttagtaaa gaaaatttta aatatacata
      841 aaagttatct tgaaatttct agcactttag gttatggttc tagttttagc tttaaactca
      901 gtcaaggata aaaaatggct cttatagatt taattgaagc ttcaaaaaaa tttggagaca
      961 aaatagtttt aaatgaagta aattttagcg caaacgaggg agaaaagatt gctattatag
     1021 gcaaaaatgg agaaggaaaa tctacttttt taaaaacgct tttaggcaca cttcctttag
     1081 atagcggtag aataataaga caaaatggaa aaagcatagc catgctttca caaaccgttg
     1141 attttaatgc aaatttaagc gtaaaagaag ccatcaagca agagcttgta gaaatttaca
     1201 ataccttaga agaatatgaa atactgcata aaaaattaga agaagatcct agtaataaag
     1261 attatcttca aaaaatagat acgcttatga ctttgattga tagtaaagat gcttggagta
     1321 tagaatctaa aataatacgc gttttaaaag aatttagttt acttgagtat gaaaatcgca
     1381 ttatatctac tttaagtggt ggagaaatac gccgcgttgg gctttgcata cttttactaa
     1441 aaaatcctga tattttattg cttgatgaac caactaatca tttagatgta tatatgacaa
     1501 gctttttgga agaattgcta aaaaattcaa agatgtgtgt gatttttatt tcccatgata
     1561 gatattttat tgacgctata gcacacaagt gtgtagaagt agagcagggt aagcttagta
     1621 tttttaaagg cggatatgca aactatttag agaaaaaaac acaaattttg caaagccttg
     1681 ctaagagcca tgaaactctt ttaaagcaat taaaaagcga agaagaatgg cttagaagag
     1741 gggttaaagc aagacttaaa agaaatgaag gacgaaaaga acgcattttt aaaatgcgtg
     1801 aagaagcgaa aaaaaatcct ggggcaatca aacgcttaaa acttgaaatt tcaagagcgg
     1861 ctttaaattt taatggagaa aaaacgatca atcgtaaaaa aatgcttttt gagcttaaaa
     1921 atataagcaa aaatataaac aataaaaatc tttttaaaga tttttcaacg cgtattttac
     1981 aaggtgaacg catagctatc gtaggaagaa atggttgtgg aaaatcaaca ttgttaaaaa
     2041 ttcttctagg gcaaataaaa caagatagcg gtgaaataaa acgcggagag cttaagatag
     2101 gatattttga tcaggctaga agcttggtaa attccgataa aagcttgctt gaaatttttt
     2161 gtcccaatgg tggagatagg gttgaagttc gtggtaaaaa tatgcatgtt tatggatatt
     2221 tgaaaaattt tttatttcct aaggaatttt tagataaaag cgtagctctt ttaagtggcg
     2281 gagagaaaaa tcgcgttgct ttagccttgc tttttactaa agaatatgat gttttgattt
     2341 tagatgagcc aactaatgat cttgatatag ctacgattaa tatattagaa gaatatttac
     2401 ttagttttga aggggctatt ttgctagtat cacacgatag atattttgtt gataaaatcg
     2461 caacaaaact ttatactttt gagggaaatg gatatataaa tattttacac actctttata
     2521 ctgaatatct tgaaaatgaa aaagaaattg aagaattgga taattttgct ttagagcttc
     2581 aaacccaaga gcaaaataat aaccaaaaag aaaaaagctc taaaaaattg agctacaaag
     2641 aaaatgagat attaaaaaac catcccgaaa aaatagattt tttagagcaa aagatagcta
     2701 aattaaatca agatttatcc gatccaaatg tataccaaga aataggtatt aacaagcttt
     2761 atcaagaact tgaagtaatg caaaaagaac ttgaaattct agaaaatgag tattttttag
     2821 tattagagaa aagcgagaat ttataattaa aaagatttta tattttttta ctctatggag
     2881 cgggaaacga gattcgaact cgcg
//
LOCUS       DARGEM010000147         2850 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.147, whole genome shotgun sequence.
ACCESSION   DARGEM010000147 DARGEM010000000
VERSION     DARGEM010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.147"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..363
                     /locus_tag="SFZ78_001649"
     CDS             <1..363
                     /locus_tag="SFZ78_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212484.1"
                     /translation="SGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLP
                     SELKNSNPNQTAYIMSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISA
                     ILAQFVLPRRENFIQGEK"
     gene            365..1516
                     /locus_tag="SFZ78_001650"
     CDS             365..1516
                     /locus_tag="SFZ78_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8212485.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIVTIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(1520..2260)
                     /gene="yaaA"
                     /locus_tag="SFZ78_001651"
     CDS             complement(1520..2260)
                     /gene="yaaA"
                     /locus_tag="SFZ78_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8212486.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENK
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQIKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(2354..>2850)
                     /locus_tag="SFZ78_001652"
     CDS             complement(2354..>2850)
                     /locus_tag="SFZ78_001652"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212487.1"
                     /translation="DLLNYLDSKGIKFNTQTLAMDEQAINELLNIANYEQASDFSNTI
                     QKYIILNNFKIDSTLKTEGVFSSYITTAKENLQTLKTQSQNEEQALIFDKALAILNNI
                     TQNDDYKLNLDLKFKNIPVSDYSTQGIDSIEKLSINNQDATEALKIILPFIMFSMLMG
                     GALF"
BASE COUNT          914 a          348 c          496 g         1092 t
ORIGIN      
        1 tctggaggag cgtgtatttt tatatgcgga ttttgtatgt tatttttaca aaatttagta
       61 ttgatacaga tttttgctgt gttatcaggc attttttatt ctatgtggtt tccatttttc
      121 tttaatctac cttcagaact aaaaaattcc aatccaaatc aaactgctta tattatgagt
      181 gctttttgga gtattacctt tgttatacta tcatttaacc tatgggtagt atcttggagt
      241 gttgataaaa cccatagttt tactttgggt tttgtttata tttttgcttt gatttttatt
      301 tcagcgatct tagcacaatt tgttttacct agaagagaaa attttataca aggagaaaaa
      361 tagaatgaat ttaattccag aaatactaga cttacaaggc gaatttgaaa aaattcgtca
      421 tcaaattcat gaaaatcctg agcttggttt tgatgaatta tgtactgcaa aattagtggc
      481 gcaaaaatta aaagaatttg gttatgaggt ttatgaggaa ataggaaaaa caggcgttgt
      541 gggggtttta aaaaagggga atagcgataa aaaaatagga cttcgtgcag atatggatgc
      601 tttgcctttg caagaatgca caaatttgcc ttataaaagc aaaaaagaaa atgtaatgca
      661 tgcttgcggt catgatggac atactacttc tttattgctt gctgcaaagt atttagcaag
      721 tcagaatttt aatggcactt taaatcttta ttttcaacct gctgaagagg gtttgggtgg
      781 tgctaaggca atgatagaag atggattgtt tgaaaaattt gatagtgatt atgtttttgg
      841 atggcacaat atgccttttg gtagtgataa gaaattttat cttaaaaaag gtgcgatgat
      901 ggcttcttcg gatagttata gcattgaagt tattggaaga ggtggtcatg gaagtgctcc
      961 agaaaaggca aaagatccta tttatgctgc ttctttactt gttgtggctt tacaaagcat
     1021 agtatctcgc aatgttgatc cccaaaattc agcagttgta agcataggag cttttaatgc
     1081 aggacatgct tttaatatca ttccagatat tgtaacgatt aaaatgagtg ttagagcatt
     1141 agataatgaa actagaaagc taactgaaga aaaaatttat aaaatttgta aaggtcttgc
     1201 acaggctaat gatatagaga ttaaaatcaa taaaaatgtt gttgcaccag tgactatgaa
     1261 taacgatgaa gctgtggatt ttgctagtga ggttgcaaaa gaattatttg gcgaaaaaaa
     1321 ttgtgaattt aatcatcgtc ctttaatggc aagtgaggat tttggatttt tttgcgaaat
     1381 gaaaaaatgt gcctatgctt ttttagaaaa tgaaaacgac atttatttac ataattctag
     1441 ttatgttttt aatgataagc ttttagctag ggctgcaagt tattatgcga agctagcttt
     1501 aaaatactta aaataaaaac taatctagaa tttcaagcac aatttcttcc tttaaacctt
     1561 tgatttgaat ttctttgagt tttaggtttg aaggaaggtt tgctaaaagc tctttattgt
     1621 tttttatttg gttttttgca cttatggaga gtaaaattcc cctataagct ttagcaaaat
     1681 gactgatgac tttaccattt tttacaaatt tataagtata aaatttcttt tttggggtgt
     1741 agaatttatc ataaaatcct gctctaaggt caagtatttc tttattttct aagtattcat
     1801 ctaaggcttt actaaaatgt tctttataaa atttctctat ggcaaaattt cctattttag
     1861 ccccttgctt gaatttataa aaaggtaggg tatcattagc tcttacaacg ccaaaaagat
     1921 tagaaaatat aagagtattt tctaaaatat aagcttgact ttttttatct aaagctttaa
     1981 aattaagata ttcataactt accccagtat aaagcaatat agcttcttga gtgggagctt
     2041 gttttaagtc gtgtttaaat ttatcaattt cattttcgtt tttaatgcca aaaagttctt
     2101 gtaaattttt taaacttgca tttttgataa attctccata atgctttaaa gcttccattc
     2161 tataaggaaa taattcttta aatataaatg agttttcatc gatgggattt tttgtacaat
     2221 tttcattttt gctttcacta ggggagaata aaattttcat tttagccttt ttttgttaat
     2281 gttatgaaaa cattaagagc aaagaaattt aatcttgctt ttaatgtttt tgaagttttt
     2341 atcattttaa aatttaaaat aacgctccgc ccattaacat agaaaacatg ataaatggaa
     2401 gtataatttt taacgcttct gtggcatctt gattgttgat gcttagtttt tctatgctgt
     2461 cgattccctg tgtgctatag tcactaacag ggatgttttt aaattttaaa tcaagattga
     2521 gtttataatc atcattttga gtgatattgt ttaaaatagc taaagcttta tcaaagatta
     2581 atgcttgttc ttcattttga ctttgagttt ttaaggtttg taaattttcc ttagcagttg
     2641 ttatatagct actaaatacg ccttcggttt taagagttga atcaatttta aaattgttta
     2701 agatgatgta tttttggatt gtattgctaa aatctgaagc ttgttcgtag tttgctatat
     2761 taagaagttc attgatagct tgttcatcca tagctaaagt ttgagtgtta aattttatac
     2821 ccttagaatc aaggtaatta agcaaatctt
//
LOCUS       DARGEM010000148         2834 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.148, whole genome shotgun sequence.
ACCESSION   DARGEM010000148 DARGEM010000000
VERSION     DARGEM010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.148"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..266
                     /locus_tag="SFZ78_001653"
     CDS             <1..266
                     /locus_tag="SFZ78_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8212488.1"
                     /translation="QLELINLQKMLFEATFINKSGKWTDMNEIKFSLLEPKEDIFYSS
                     FVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            242..793
                     /gene="ruvA"
                     /locus_tag="SFZ78_001654"
     CDS             242..793
                     /gene="ruvA"
                     /locus_tag="SFZ78_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG8212489.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            803..1843
                     /locus_tag="SFZ78_001655"
     CDS             803..1843
                     /locus_tag="SFZ78_001655"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG8212490.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            1903..2118
                     /locus_tag="SFZ78_001656"
     CDS             1903..2118
                     /locus_tag="SFZ78_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG8212491.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            2120..>2834
                     /locus_tag="SFZ78_001657"
     CDS             2120..>2834
                     /locus_tag="SFZ78_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8212492.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLTLPQILILHGWGANKELMKQS
                     FYPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKNVVDEDFGEIFAKQKAKSLVFWGKSDEATPLYCGEKMHQLLKNSTFYPL
                     EGDHFFFLKYSAFIAQKIKE"
BASE COUNT         1096 a          386 c          470 g          882 t
ORIGIN      
        1 tacaattaga attaatcaat ttgcaaaaaa tgctttttga agcaactttt ataaataaaa
       61 gcggcaaatg gactgacatg aatgagatca aattttcact tctagaacct aaagaagata
      121 ttttttactc ttcatttgtt aatgaaagtg ctaaatttat aggtattaaa aaagtcatac
      181 aaaacaacca agaaagtata gaaatacata aaaaattaga ttatgaagaa aaggatatag
      241 catggttgtc ggcatcgaag gaataatcac aaaaaaagaa cctactttta tcattgttaa
      301 atgtgctagt ggtttaagct atgggatatt tatttcgctt ttttgttctg ctaaaattca
      361 aactcaagaa aagcatgagt tttttattac tcaaatcatc aaagaagatt ctaataaatt
      421 ttatggcttc ttggataaag atgaacaaaa aatgtttgaa atgcttttaa aagtcaatgg
      481 agtgggtgca aatactgcta tggcggtatg ctctagtctt gatgtaaatt ctttttacaa
      541 agcgttaagt ttaggcgatg aaagcgtgct taaaaaagta cctggtatag gtccaaaaag
      601 tgcgaaacgc attatagtag aactttcaga tacaaaaacc aaacttgaaa atgtaagcga
      661 tgataaaagt gaagccttag ccgcacttct tactctaggc tttaaacaag aaaaaatcat
      721 aagtgtttta gcaagtgctc aagcaacagg cacaagcgaa ctcatcaaag aagctcttaa
      781 aaaactagga taaaggaata aaatgaaatt tgcaatactt tttggcggaa attcttatga
      841 acatgagatc agtatagtaa gtgctgtagt acttaaaaaa gttattaatc aaaatttaga
      901 atttattttt tgtgatgaag aaagaagatt ttatcatatc ccaagtgaaa aaatgaattc
      961 taaaactttt agcaccaaag cttataaaaa agaaaaagaa cttttcatca aacaaggagg
     1021 tttttttagc aaaggctttt taaaagaaaa taaactagag tgcgagtgcg tgatcaatct
     1081 tatccatggt agagatggag aagatggaaa aattgcagct ttatttgagt tttattctat
     1141 taaatttata ggacctaggc ttgaagccag cgtattatct ttcaacaaag aacttaccaa
     1201 actttatgcc aaaagcgttg gagtaaaaac acttgattat accatggtaa gaaaagggca
     1261 aaactctaaa gaaaagctta gttttccttg cattatcaaa cctgcaagac ttggaagtag
     1321 cataggtatt agtatagtaa aagatgaaaa agatttagaa tacgccaaag atgtaggttt
     1381 tgaatttgat aatgatcttg tagtggaaga atttaaaaac aatatcaaag aatacaatct
     1441 tgcaggatgt atgatcaatg atgagtttgt tttttccatc atagaagagc caaagaaaaa
     1501 agaattttta gactttgaac aaaaatatct tagcttttca ggacacaatg agcttataga
     1561 agcaaattta agcgaagaat taaaagaaaa actcaaagat agttttaaaa agatctacaa
     1621 tcctttgttt aaaggtgctt taatacgctg cgattttttt atactggata atgaaatata
     1681 tttaaatgaa atcaacccaa atcctggttc tttggctaat tatcttttta aagattttag
     1741 tactacttta aacgctttag ctgatcaaat ttcacttgaa aaaatgataa aaatcagcta
     1801 caacttcctt cactctatca acggacaaaa aggaaaatta taagctttta agtcaaaata
     1861 cgctaaatta tacataaaat ttagcgtatt ttaggaagaa aaatgctctc ttttaaacaa
     1921 gatgaaattt acactgccac cgaagtggta agaaatttta gccccattat ggaaaaactc
     1981 aaaaaaagcg aaagtggaaa aatagttatt ttaaaaaata acaaatttga agctgtaatg
     2041 cttagcatga aggaatttga acgcttacaa aacgccatgc aacttttaga aaatatctac
     2101 aaaaatcaaa aggcttaaaa tggctcaaac tcaactttct tataaaaaca aaacttatca
     2161 aatttcttat gaaattttag gtgatcttac cttaccgcaa atacttatct tacacggctg
     2221 gggagccaat aaagaactta tgaagcaaag tttttatcct tttttgaaag acttttgtca
     2281 aatttatatg gatttggcgg gttttggaaa ttcaagtgtg gaagaaattt taaacactca
     2341 agattatgcc aatatcacag aacttttttt aaaacaaaaa aaactcaatg tctgtttttt
     2401 catggggcat tcttttggtg gaaaagtaag caccctactc gcaaaagaaa aagacaccct
     2461 aatcttactt tcaagtgcag gaattttagc taaaaaatcc ctaaaagtgc gttttaaaat
     2521 ccgtattttt aaaattttaa aactctttgg tttgggaaaa ttttatcgct attttgctag
     2581 taaagatgga gcaaatctta gccctatgat gtatgaaacc tttaaaaatg ttgttgatga
     2641 ggattttggt gaaatttttg ccaagcaaaa ggctaaaagc ttggtttttt ggggaaaaag
     2701 cgatgaagcc acgcctttgt attgtggtga aaaaatgcat caacttttaa aaaatagcac
     2761 tttttatcct ttagaggggg atcatttttt ctttttaaaa tattctgctt tcatagctca
     2821 aaaaattaag gaaa
//
LOCUS       DARGEM010000149         2788 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.149, whole genome shotgun sequence.
ACCESSION   DARGEM010000149 DARGEM010000000
VERSION     DARGEM010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.149"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1210
                     /locus_tag="SFZ78_001658"
     CDS             <1..1210
                     /locus_tag="SFZ78_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8212493.1"
                     /translation="VEDFKMQKTKIFSMMLAVSIIPSFILKSIFTPSKNNLAIAVILF
                     SSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPFHAFGLTVTTFLPLL
                     EGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKKLDALMFESLRIVVS
                     GAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDVDYWLIHRANKEGSV
                     GMPLPGTAVRIVNPNNYENLKANEDGLILIGGHQVMVGYLNDKEKTDEVVKEIDGIRW
                     YNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKFIDTEVVKFCATSLE
                     DEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIEKIPLLGSGKVDLKK
                     VKELAKNLAI"
     gene            complement(1218..2129)
                     /locus_tag="SFZ78_001659"
     CDS             complement(1218..2129)
                     /locus_tag="SFZ78_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8212494.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(2326..2411)
                     /locus_tag="SFZ78_001660"
     tRNA            complement(2326..2411)
                     /locus_tag="SFZ78_001660"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2375..2377),aa:Leu,seq:gag)
     gene            complement(2447..2785)
                     /locus_tag="SFZ78_001661"
     CDS             complement(2447..2785)
                     /locus_tag="SFZ78_001661"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG8212495.1"
                     /translation="MKKVLFLLLACAAVAFAAEINAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
BASE COUNT         1063 a          430 c          470 g          825 t
ORIGIN      
        1 tgtagaagat tttaaaatgc aaaaaactaa aatttttagc atgatgctag cagttagtat
       61 tatacctagt tttatactca aaagcatctt cactccttca aaaaacaatc ttgccatcgc
      121 agttatttta tttagtagtg gaagtgaagg ttctccaaaa ggtgttatgc tcaataaccg
      181 taatatttta agcaatatag cacaaatttc tgatgtgctt tgcacaagaa ataatgatgt
      241 cattctctca tctttaccac cttttcatgc ttttggactt accgtaacta catttttgcc
      301 tttgcttgaa ggtattaaaa gcatcacttt ttcagatcca accgatgcct taggggttgc
      361 caaagctgtt gctaaaaata atgtcactat tatgtgtgga acttcaacct ttttaggaat
      421 ttatgcaaga aataaaaagc ttgatgcttt aatgtttgaa agtttaagaa tagttgtatc
      481 gggcgctgaa aaactaaaaa atgaagtaag aactactttt gaaatgaagt ttaaaaaaag
      541 catttttgaa ggttacgggg ctacggaaac cacgcctgtg gcgagtgtaa atttgccaaa
      601 tcattttgat gtggattatt ggcttataca tcgtgccaat aaagaaggaa gcgtaggaat
      661 gcctctacct ggaactgcgg tacgtattgt taatccaaat aattatgaaa atttaaaagc
      721 aaatgaagat ggactcatac ttataggcgg tcatcaagtt atggtaggct atcttaatga
      781 caaagaaaaa accgatgaag tggttaaaga aattgatggc ataagatggt acaacacggg
      841 agataaggga catttggatg aagatggttt tttatatatt gtcgatcgtt attctcgctt
      901 tgcaaaaatt ggcggagaga tgatttcttt gggtgcaata gaagaagaaa ttgccaaatt
      961 tatagacact gaagtggtta aattttgtgc cacatcttta gaagatgaga aaaaagggga
     1021 acaaattgtt ttactcatag aatgcaataa tgaaattttt gaaggagtat gtgaggctat
     1081 aaaaaattct aatataccta cactttttaa acctagatat tattttcaaa tagaaaaaat
     1141 tcccctccta ggttcaggaa aagttgatct taaaaaagtt aaagaattag ctaaaaattt
     1201 agccatataa tttgagctta taacaaagtc caaattaaaa ttggcataga aacaaaagca
     1261 aaaagaactc caaaggctac agcacttacg gctaaattac tatctagttt agctttcatt
     1321 accatagctc ctgctaaagt catagtagga gctgcacttt ctataatagc aacgatggta
     1381 gaatctttta attccaaatt aaatattttt aaacaaaata caaaaaataa aggagctaaa
     1441 atcattttag caaagatgac aactattgta ggtttgtaag aggttttaat cgccataaag
     1501 ccaagtccta aacctatagc aaaaagtgca acaggggttg cagaggcacc aaataaacga
     1561 ataggagaga aaataaattc aggtaaagta atcaatttac acaaaaaacc aaaaagcaaa
     1621 gctaaaaaag gtggaaaact aagaattttt ttaacattag caagcaaact gactttttct
     1681 ccatttccca aagaaagtat aaaaggtcca aaaagtgata taggtaaagt tgtggctaaa
     1741 gcatcgtaaa atataacttc agcgctaaat tgtgggtcat taaatatacc agcaacaata
     1801 ggcataccca caaatatagt atttccaaaa caagaaagca aaaacatact gactaaagtt
     1861 actttagaaa aatgaaaaac ttttccaata agaatagcaa aaaaagctgc tagtatacag
     1921 ctaaacaatc caataaaaat aaaaataatc aatgaaaaat caaaatttaa atgatatgct
     1981 ttatcgaaaa tcaaacaagg taaagcaaaa ataatagcaa aatctaaaaa agtcctagct
     2041 tgtttttgct tcaaaacgcc aattcttttg gcaaaatatc cgcctgcaag taaaataaaa
     2101 attgtaaata atggtataaa aacaaacatt gagtaatcct ttttaaggga tggtttttga
     2161 aaacggatag aattatattc tttatactta aaaaaaatct taatattttt taagtttttt
     2221 aaaaaaacca atatttttta ttttttgtaa ctttaagaaa ttgtaagttg aaatttgatt
     2281 ttgaatagtt agtattttaa gttgaatgat tataatttta aataatggtg cggttagcga
     2341 gatttgaact cgcacacgcg gagcgcacca ccccctcaag atggcgtgtc taccaattcc
     2401 accataaccg catagaaaaa agcccaaaaa agggctttaa taagttttat tgtaaaacta
     2461 taaaaggatt tgcgtaaagt gctattagcg cgataacaag agcatagata acttgtgctt
     2521 cgatcatcgc taaagcgata aacatagttg tcattaattt tggcccaaga ccagggtttc
     2581 tagctgttcc tgcaattgtt gccgctgcag tattacccat accgatagca ccaccaagtg
     2641 ctgcaacacc aagacctagg cctgctgcaa gaactgaaaa tgctttaatc catacattaa
     2701 tagcttcttg ctctactgga gcattaattt cagctgcaaa agctactgct gcacatgcta
     2761 ataataaaaa aagaactttt ttcattat
//
LOCUS       DARGEM010000150         2742 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.150, whole genome shotgun sequence.
ACCESSION   DARGEM010000150 DARGEM010000000
VERSION     DARGEM010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.150"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            93..485
                     /locus_tag="SFZ78_001662"
     CDS             93..485
                     /locus_tag="SFZ78_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212496.1"
                     /translation="MNNKEQIKKLRDNAELAWASYGYFDFIDKQYSFDEKDKDKFKTL
                     YAKINDLKKSDEKVQNAKATYTDILNMEYNSLFDGEFSPLQAKQFFERYDLLIHQTNT
                     ESSFSAALFYDTHKDGFVVWFRETECGF"
     gene            742..2265
                     /locus_tag="SFZ78_001663"
     CDS             742..2265
                     /locus_tag="SFZ78_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEG8212497.1"
                     /translation="MEELINNLRGYAELAQASYFNFMYINNDEREMDSYKIGQNRFPK
                     DKDNIENLEYTKTLSKKYKDYFIYDDSIALYPTLNGEFGEIQAKNFAKKYEIKFHQPN
                     TASGFSATLFYDKEKDKFVVGFRGTEGLWSMDTLADIGLTFGKGDFQLNALKQFLLDI
                     APILNKVDSNNIIFIGHSLGGYLAVIAMQFCDTIDRSLNTQFNAIKFMASQVYTFNSP
                     AIDEIDNMLMRALAALLDKNIMEQVLNPQKVYCVYDSGGINIIASAQYGSHNRLPIYT
                     GKDSHSIIPLTQTLYFYSYLLELDANHNKVKDKSFSECIEYLNHFIKNIQIYTETFVL
                     KNNATNKNSSFGFNKNHPEKINHFEYSLSLIATIMQETNGILEELGDSYYTSYKAPTI
                     SQTKIIDFILKAQEKEKYILILDKNDFNKYRKDCSFINNQENLAHKIAIGEFRIFIVV
                     YKDMKCLENINNITKIYGYNSKSYKIKDQIWDEQYLGGVCKISQALYFNGKAKIGII"
     gene            2273..2590
                     /locus_tag="SFZ78_001664"
     CDS             2273..2590
                     /locus_tag="SFZ78_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212498.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNAIKQDTPSYYFSPSNEFK
                     CKS"
BASE COUNT         1044 a          352 c          438 g          908 t
ORIGIN      
        1 aggaagtatc ttacaacaaa gagtgttgct tcttatgagc ttgaatggcg tgaaaattat
       61 gaaaattttg cttattttaa aaaggaaata aaatgaacaa taaagaacag attaaaaagc
      121 ttagagacaa tgcagaacta gcttgggcta gttatggtta ttttgacttt atagacaagc
      181 aatatagctt tgatgaaaag gataaagata agtttaaaac tttatatgca aaaataaatg
      241 atttaaagaa aagcgatgaa aaagtacaaa atgccaaagc tacctacacc gacattctca
      301 atatggaata taattcctta tttgatggcg aattctcccc actccaagcc aaacaattct
      361 ttgaaagata tgatttatta atccatcaaa caaatacaga gtcaagcttt tctgctgctt
      421 tgttctatga tacacacaaa gatggtttcg tggtgtggtt tagggaaaca gaatgcggat
      481 tctaaaaata ctttatattt gttggattat attatgtgtt gtaggttggt ttatatctcc
      541 tattgttgga cataatccaa atagggttga ggagtttttt ataatgcttg gttggatagt
      601 ctttccacta atgatagcca atctatggct ttttggaata acaagaatta aaaaatattt
      661 aaggaatttt ttaatattgt ttttatatta ccctttggca tttgctctgt ttttggtgct
      721 aaattaactt taggagacta aatggaagaa ttaatcaaca atctaagagg ctatgccgag
      781 ttggcccaag caagttattt taactttatg tatatcaata acgatgagcg agaaatggat
      841 agttataaaa tagggcaaaa tagattccct aaagataaag acaatataga aaatttagaa
      901 tatacaaaga ccttatctaa aaaatataaa gattatttta tttatgatga ttccattgca
      961 ctatatccga cacttaatgg agaatttggg gagattcaag ctaaaaactt tgctaaaaaa
     1021 tatgagatta aattccacca accaaatacg gcttctggct ttagtgctac tttgttttat
     1081 gataaagaaa aagataagtt tgtagtaggg tttaggggga cagagggact ttggagtatg
     1141 gatactttgg cggatatagg gcttaccttt ggtaagggcg attttcaact taatgcttta
     1201 aagcaatttt tattagacat agcacctatt ttaaacaaag tagattcaaa taatattatt
     1261 tttatagggc attctttagg cggatattta gcagttatag caatgcaatt ttgcgatact
     1321 attgatagga gcttaaatac acaatttaat gcaatcaaat ttatggcatc gcaagtctat
     1381 acttttaatt ctcctgctat tgatgagatt gataatatgc taatgcgggc tttggcagca
     1441 ttattagata aaaatattat ggagcaagtc ttaaatcctc aaaaagtata ttgtgtctat
     1501 gacagcggtg gtataaatat catcgcttct gctcaatatg gctcacacaa tagactgcct
     1561 atctatacgg gtaaagattc tcactccata atccccctaa ctcaaactct ttacttctac
     1621 tcctatcttt tagaattaga tgctaaccat aacaaagtca aagataaaag ttttagtgag
     1681 tgtatagagt atcttaatca ttttataaaa aatattcaaa tatatacaga aacttttgtg
     1741 ttaaaaaata atgctactaa taaaaatagc tcttttgggt tcaataaaaa ccatccagaa
     1801 aagattaacc actttgagta ttctctttca ttaatagcca ctataatgca agaaacaaat
     1861 ggtattttag aagagcttgg agatagttat tatacaagtt ataaagctcc taccattagt
     1921 caaacaaaaa tcatagattt tattttaaag gcgcaagaaa aagaaaaata tattttaatt
     1981 cttgataaaa atgattttaa taaatacaga aaagattgtt cctttattaa taatcaagaa
     2041 aacttagctc ataaaattgc cattggggaa tttagaattt tcattgtggt ttataaagat
     2101 atgaaatgtc ttgaaaatat taataatata acaaaaatat atggatataa ttcaaaaagt
     2161 tataaaataa aagatcaaat ttgggatgag caatatttag gtggagtttg taaaatatca
     2221 caagctttgt attttaatgg aaaagctaaa ataggtatta tttaggaaaa ttatgatagg
     2281 taaagacttt ttatattcta ttcataaaga taaaaaaagt atttatttgt tttgtgaaaa
     2341 taaaagcata attgattgtc aaagtattta tgatgaactt tataaattag aagcaacgac
     2401 agattttact tttgaagaac ttcaaaacta tcaagcttat atcttcctaa actccaccct
     2461 ccttacaggc tcaaatgaac ttcctaacaa tcctttttac tttggagaat tagatcaaga
     2521 taatgccata aaacaagata cacctagtta ttatttttct cctagtaatg aattcaaatg
     2581 caaatcataa aggataaaat aatatatgaa aacaagccaa atatatgaaa ctttataaat
     2641 atgctagaat gtgctggact aggtattcta taaatttaaa tgagaacatg cttaaggaat
     2701 ttctaaaata taaaaacaat aggatgaaat aatggatgaa ga
//
LOCUS       DARGEM010000151         2739 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.151, whole genome shotgun sequence.
ACCESSION   DARGEM010000151 DARGEM010000000
VERSION     DARGEM010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.151"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            14..991
                     /locus_tag="SFZ78_001665"
     CDS             14..991
                     /locus_tag="SFZ78_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8212499.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLISISYEDKEKAESDEISLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES"
     gene            complement(988..1272)
                     /locus_tag="SFZ78_001666"
     CDS             complement(988..1272)
                     /locus_tag="SFZ78_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEG8212500.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDE
                     ELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            1366..2037
                     /locus_tag="SFZ78_001667"
     CDS             1366..2037
                     /locus_tag="SFZ78_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEG8212501.1"
                     /translation="MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYC
                     QAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMPAQNFGKHLP
                     CWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCK
                     VYTDFKAKRFYPANYSKGWITRSYLYMSKTYNIRLSDQERKLMEAWDKQYPMDEKEKR
                     IRALL"
     gene            complement(2029..2304)
                     /locus_tag="SFZ78_001668"
     CDS             complement(2029..2304)
                     /locus_tag="SFZ78_001668"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212502.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDKDFGILLNVVCNIREKLDESFEEEDKSLVIDIDEIVAKVCKELE"
     gene            complement(2351..>2739)
                     /locus_tag="SFZ78_001669"
     CDS             complement(2351..>2739)
                     /locus_tag="SFZ78_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HEG8212503.1"
                     /translation="ANLSDDESYRWVLNQRYGKASSKDLSIDELRDFAITLGYDEKFL
                     KKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNAKNPTQWALREFINNIVKKRPL
                     HLWYLSIEDANKVILGLKNLENNSTH"
BASE COUNT         1008 a          371 c          446 g          914 t
ORIGIN      
        1 aggaaaaggc tttatggtaa gaaaacctaa gtttaaactt attgccaaag gtgaggatat
       61 cacagaaaaa ctttctaaaa atcttattag tattagttat gaagataaag aaaaagctga
      121 aagtgatgag ataagtttaa gtgtttttgg gctttattcc aagccacttt ttggggatag
      181 tttagagctt tggcttggct ttgaaaagct ttataaatgt ggaagcttta gtgtgaatgt
      241 agtgagtaaa aactatactt caaatactac tgaagttaga gcaagtgcta ttaattttag
      301 tggaaaaggc agcgttaata taaaagagaa aaagacaaga agctttgaaa acactactct
      361 ttttaccata gcaagaaaaa tcgcaaatga aaacaatcta aaaatcaaaa caagtggaga
      421 ggatcaaaat atagtaagta ttttacaaaa taatcaaagt aatttagaat tcttatatag
      481 tatatgcttt gattatggtt ttatttgctg tgtaaaagaa aatactttaa tcattactcc
      541 aaaagatggt aagattggcg ataatgctgc taatatcaca agcaagaatg aaaatttacc
      601 tttatttgaa atagctttaa aagaatgtat ttcattagaa atttcagaaa gtgctagaaa
      661 tgaatatagt gccgtaatag cagaatggca agatataaat gaggcaaaga taaaaagcat
      721 aaaagtagga agtggggaga atatatataa aatgcaaatc tcacaaccaa aaaatgataa
      781 tgaagctttt aaaaaagcac aagcaaaact caatgagctt caaaaaggtg gattaaatgg
      841 aagatgtgag cttattgggc gtgaaataag agcaggtgga aaacttaaga ttaaagatat
      901 taatatggat cattatgaat ttagtattaa aagcgtgagt catagtttta atgaccaagc
      961 ttatataatt agcgtggagt ttgagagcta aaacaaactt ggttctaaat tttctctcaa
     1021 ttctttagtg attaaataca ccgcatttaa acttaaatcg tattttttag cacattccac
     1081 acttgcattt ttagtgctta ttccctgttt tatgagtgtt ttaaaatcct gttttaattc
     1141 ttcatctcta agtaaggttt tatagcttgg tatgtaaata tttgcaccgc caaattcttt
     1201 taagatttct cgtttgtcgt tatttttcac aaaatcaata aaatattcaa agtattcgtt
     1261 attgctaagc aatgctagtc ctatttgagt gtttttgcaa attatagcaa aaaagttaaa
     1321 ttttatttag tagggtataa ttttaaaaaa taaaaaggag aataaatgaa aaaaataata
     1381 agcgttttaa tacttgcttt aagcttatta aatgctaaaa gttttgaaga aagcaaaaaa
     1441 gaattagtaa aattttataa tgatctaggg agctcttact ggtatgattt ttattgtcaa
     1501 gcacctttta aggttaataa aaaaggaaaa tatattagtt ttgaagtgat taaaagtgat
     1561 ttatatgctc ctagaaacga atacaccaaa aaaggaaaaa ttaaccaaag aatcaaacgc
     1621 atagaatggg agcatattat gcccgcccaa aactttggaa agcatttacc ttgctggaaa
     1681 gaaggtggca gaaaagcttg taaaaatgat ccaacttttg caaaaatgga agccgataaa
     1741 caaaacctag ttccagccat aggagagata aatggggata gaagcaattt tagatatgct
     1801 gaggctccta ctaatttaaa atatactcaa tatggaaatt gtaaggttta tactgatttt
     1861 aaagcaaaaa gattttatcc tgcaaattat tctaaaggct ggattacaag aagctattta
     1921 tatatgagca aaacttataa tatcagatta tccgaccaag aaagaaaact tatggaggct
     1981 tgggataaac aataccctat ggatgagaaa gaaaaaagaa ttagagcatt actctaattc
     2041 tttgcaaact ttagccacaa tttcatctat atcaataacc aagcttttat cttcttcctc
     2101 aaaactctca tcaagttttt ctctgatatt acaaaccaca ttaagcaaaa tcccaaaatc
     2161 tttatcagtt ttaatctgat gagtgattcc attatgcatt atttcaaggc ttgttctttt
     2221 tgcagcaaag gcaatttgtg agtgtttttc tatgcctaag gttaaaaaaa actctgcatc
     2281 gtaagaatgt atttctaaaa tcattttaat ctccttttgt tttgatgaga caacattagc
     2341 ttcgtttggc ttaatgtgtg ctgttgtttt ctaaattttt aagccctagg ataactttat
     2401 tagcatcttc tatacttaaa taccaaagat gcaaaggtcg cttttttaca atattattaa
     2461 taaactctct taaagcccac tgagtaggat ttttagcatt tttactccaa atggcttgta
     2521 tcatattaag ttgctttttt gtagcccttc cgcttttagt gttttctttt ttaaaatacc
     2581 ttgctttttt ggtattttgc ttttttaaaa acttttcatc atagcccaaa gttatagcaa
     2641 agtccctaag ttcatctatg cttaaatcct tacttgaagc tttgccatat ctttgattta
     2701 aaacccagcg atagctttca tcatcgctta aattagcat
//
LOCUS       DARGEM010000152         2680 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.152, whole genome shotgun sequence.
ACCESSION   DARGEM010000152 DARGEM010000000
VERSION     DARGEM010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.152"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..192)
                     /locus_tag="SFZ78_001670"
     CDS             complement(<1..192)
                     /locus_tag="SFZ78_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212504.1"
                     /translation="MTRLEFDEKIKQLGLTRKIFADIAKVSYSGISTNWKDDKEIPSW
                     VEPFLYYYEKGLALDELLKI"
     gene            331..699
                     /locus_tag="SFZ78_001671"
     CDS             331..699
                     /locus_tag="SFZ78_001671"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212505.1"
                     /translation="MEKVDYCRMSCLDGKINAFKYLLDLFLSDLENENDVKTCNMFEN
                     DTSIEYVKDMLMMMLDKIKEIVIDQDNCHHNIDMYASVYHEIIKDELGKEFTPKELKE
                     LHKKQEERLLKELLEGSKKK"
     gene            1141..1371
                     /locus_tag="SFZ78_001672"
     CDS             1141..1371
                     /locus_tag="SFZ78_001672"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212506.1"
                     /translation="MQTITIKAKEQEINKLLDILKELNISYELESNNYKKALNDYESG
                     KSWQETKQELHKALNDYESGKAKLTPLGSEWL"
     gene            1371..1658
                     /locus_tag="SFZ78_001673"
     CDS             1371..1658
                     /locus_tag="SFZ78_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002926587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEG8212507.1"
                     /translation="MQILESDLFTNELNIILSFIVRKESIKVKNTFKNDLYKALKKLD
                     FMPYKFRKSLAFDDENVRDFIFKGYVIPYKIDKEKDLIIILGIYKENLPNF"
     gene            2194..2610
                     /locus_tag="SFZ78_001674"
     CDS             2194..2610
                     /locus_tag="SFZ78_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212508.1"
                     /translation="MKKLGLVLAALVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVGPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SNGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
BASE COUNT         1119 a          297 c          366 g          898 t
ORIGIN      
        1 tatttttaat aactcatcta aggctaaacc tttttcataa taatataaaa aaggctccac
       61 ccacgatgga atttctttgt catctttcca atttgtagaa attccgctat aacttacttt
      121 tgctatatct gcaaatattt ttcttgttaa tcctaattgc ttaatttttt catcaaattc
      181 taatcttgtc attttataac ctttttagtt aattataaaa taattataac atttttttat
      241 taaataacat aaaaatatat tgactttttt agtaaaaaaa tataaaatta cactttattt
      301 ttagttaaat acataaaaaa aggagaaaaa atggaaaagg tagattattg tagaatgagt
      361 tgcctagatg gcaaaataaa cgcttttaaa tatcttttag atttattttt aagtgatttg
      421 gaaaacgaaa acgatgttaa aacttgtaat atgtttgaga atgatacaag tatagagtat
      481 gtaaaagata tgcttatgat gatgcttgat aagataaaag aaattgttat cgaccaagat
      541 aattgtcatc acaatataga tatgtacgca agtgtttatc atgaaattat aaaagatgag
      601 ttaggtaaag aatttacccc taaagagctt aaagaactgc ataagaaaca agaagagaga
      661 ttattaaaag aattacttga agggagtaaa aagaaataaa acaaggtagt aagtttaact
      721 tgctaccctt acctttaagg gcaaaaatct atttttaatc ttctaaattc aaatacaaat
      781 aaaccacgca ataaaatcct tataaaaagt atataaaaaa gatgatgtaa ataaaattta
      841 ctccatataa aacaaacttt gaaatataca aaaattaatt taatatttaa gataatttta
      901 agaaaggttg aaacgataaa agaagctaat tttagggctt ttgtataaaa caccacttaa
      961 aaagatgagc taattagtgg gggggggcta atgggtagat taaacctagg gcttaaaagc
     1021 tacctaactt taacttatat agatttgtca aagtatttta attaaatagc ttttctttta
     1081 aaggcttata aaataaaata agttataata actaaacttt gaatcagtaa aggaaaagct
     1141 atgcaaacca taacaataaa agcaaaagaa caagaaataa acaagctttt agatatttta
     1201 aaagagttaa atatcagtta tgaactagaa agcaacaact ataaaaaggc tttaaatgat
     1261 tatgaaagcg gtaaaagttg gcaagaaaca aaacaagaac tacataaggc tttaaatgat
     1321 tatgaaagcg gtaaggctaa attaacgcca ttaggcagtg agtggctgta atgcaaatcc
     1381 tagaaagcga tttatttaca aatgaattaa atattatttt atcctttatt gtgagaaagg
     1441 aaagtataaa agttaaaaac acttttaaaa atgatttata caaggcttta aaaaagcttg
     1501 attttatgcc ttataagttt agaaagtctt tagcctttga tgatgagaat gtaagagatt
     1561 ttatatttaa aggttatgta ataccttaca aaatagacaa agaaaaagat ttaattatta
     1621 tcttaggtat ttataaagaa aacctaccaa acttttaaaa aattactttt taagcttttg
     1681 aaaaaatgag tttaagtttc aagctaaaaa agcttaaaaa aatgagaaaa cttaaataaa
     1741 aaaagcgtga aacattctat ttaagctaaa taaacttaaa tggctttaaa aataccttaa
     1801 tataattttt aataacccta taaaataggg ctttaatgat gatataaata aataaagctt
     1861 gaaaagtgta gttttcaaat ttgatttaag ttttcaaagg atattcttta aatttctata
     1921 caaataaaaa ggtaacttaa taaaggtaac tattataaaa atactataaa ataggtattt
     1981 atttttagtt atatatttca agtcctttca tctgcaccac ttgcttttat cattttcaaa
     2041 caagagttga tttctcataa atttttattt cattttaaaa tttcttatga ttgttagata
     2101 aaatgcaaat ttaatttaga taaatttaaa aattatcttg caaaagattt gaaaaataat
     2161 tcaaatatac aaaattcaat tcaaggagat aaaatgaaaa aattaggttt agttttagca
     2221 gctttggttg ctttgaatgt gtcagcattt gcagatttga tagttatcaa taaaaaagat
     2281 ttagttccag tttcagcaag cgaaatgcaa aacaaatatt tccaagagag tataaaatca
     2341 actttaactg agccactttt taaaaaggca actttttatg aagcagatat tgttgcaaaa
     2401 gttggtccaa gaacttataa ttcaactcaa gctataatac aaaaagaata ttcagataaa
     2461 agcaattatg tttattataa acaagttctt atattaacta gtaatggtaa aagagctaga
     2521 ttatctactc tttcttgcga aattgcaagt tttgataaga aggggtattt atgtggaggc
     2581 acagctgatc ataattattc tattaagtaa atattgcaaa taaaaatccg ccttgagttt
     2641 tcactcttgg cggaaatcca ccattagaac atactatgaa
//
LOCUS       DARGEM010000153         2672 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.153, whole genome shotgun sequence.
ACCESSION   DARGEM010000153 DARGEM010000000
VERSION     DARGEM010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.153"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(83..787)
                     /locus_tag="SFZ78_001675"
     CDS             complement(83..787)
                     /locus_tag="SFZ78_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG8212509.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            complement(787..2616)
                     /locus_tag="SFZ78_001676"
     CDS             complement(787..2616)
                     /locus_tag="SFZ78_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8212510.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYEFFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRVQILNVRESIKED"
BASE COUNT          948 a          435 c          266 g         1023 t
ORIGIN      
        1 atttaacttt aaaaagcgat aaattttgtg ttattcttaa ttttatttaa gaatatcttt
       61 gaaagtaatg aaaatagaac ttttaataaa gctctatatc tttagaatta agttctttat
      121 aagctgcaca agcttcttga tgtttttgat cacaagccat accaaaatat ctttttgcct
      181 ttgttaaatc ttgtttttct agttgattat agcgtcctaa caaataacaa gactcaccaa
      241 aacctaaagt gcaagattta gaataaaaag caagggcaga ttttacactt gctttaacaa
      301 gctctccttt atcatataaa gaccctaatt gataacaagc tcttgcattt tttaaatcac
      361 aagatctttt ataaaaactt gaggccattt gtccatcttt ttctttttca taaaataaag
      421 ctatattatt acaacttaac gattctccta aagtacaagc tttattaaaa gccaaaagag
      481 cttcattttt ataaccttga ttttgcaaaa gcaaagccat attagaacac gcacttgcta
      541 aacccaattt acaagcttta tcataaaatt tataagcttg atttaaatcc ttactcatac
      601 ccttagcact ttcgtacata aaagctaaag aaaaacaagc tttagaaata tctttttcac
      661 aaaggctttt aaaaatttca taagctttat caaatttatt tgcttcataa agttttaaac
      721 cttcttctaa ttcacttaat gcaagtaatg aattaaaaaa taaaaataaa gctaaaaata
      781 ttctcattaa tcttccttta tactttctct aacatttaaa atctgtactc ttcttttttg
      841 aagttctgct tttttaagat ctaaaaattt atttttttct tggattaaat tttgactttg
      901 ttctaaaaaa ttttttgcaa tttttgtcaa aataggctta ttaataagca aagtttcaaa
      961 ctcataaaca tttaattcat ttaaaactct ttcataaatt tcgctttttt taggataaaa
     1021 aagtacgaat tcagaactat caagctcata aagaacacga ctttcattga ttttacgact
     1081 aaaaaatgca aggcttagtt tcgtagcatt ttcataattt gtaaaagcct taagatttaa
     1141 tttttcaaaa aataaatcaa gctctaaaat acttttaaat aaaagctcct taaaatcttt
     1201 caaaaagtac tcatcacttg cattgcaaaa agctcttaat tcactaaaat ttttatcact
     1261 ttggaaaatg tgatcttttt gtatgtttga aaattctgct ttaaaaagca aaatttctct
     1321 ttcaagtatg tttataaaat cttttaattt catcttgatt tcttcaaaag atttataaag
     1381 ttcatttttg atttttttaa actctttact catcacatca ctattataaa acatcgccaa
     1441 aaaagcatcg tcgcttgaaa tataaggcgc tttataatca tatcttgtgt ataaatcttt
     1501 ctttaaaaat cctttgcttt ctttgtaaaa ataagcatct ttttccttaa cacttgcaaa
     1561 aatttcacta gaaattcttt cgctaatgct tttaagctgt tctaaaatct gatgatttaa
     1621 aatttcaatc tcttttaaaa aaaattcata cgctaaaagt aaatgctttt cataactttg
     1681 aaattgattt aataaacgat caaaaatacc tacaaaaagt tggttttcat cttctaaaat
     1741 ttcgcataaa tttaaaattt ttcttttaac aaatttttct tttaaaactg ttgtatctag
     1801 ctgagttaaa aaatcaagca aagattgaaa attagatttt tcatagcttt gctcatcttt
     1861 agcctctttg caagaaatgg caataagctc attaaaatat tttaaaaaca cactttttgc
     1921 ataatttaaa acattatcta gctcttctgt gcttaattta tctttttgat ttaatacaca
     1981 aatgctattt tctcctaaaa gttctaaatt tgcttttatg gcatcttctt cacttttttt
     2041 acctgcatta tcaatcaaac ttaaccaaat cgctccatga atatttttaa gctcatcaag
     2101 agttgttaaa gtatcatttt catttgcatt taaacctgga gtatctacaa gagtgatttt
     2161 ttcaagtaaa ggaatgggtg caaaaatatg caaacttttt gcttgtttta cttcatttct
     2221 ttgatccgta taaaaggcta atttttctat atttgtgata atatcacttc catcttcaaa
     2281 ttctactctt aaaaaatatt cttttgcata gcgtaaaaaa gtaggtttaa aagtaacagg
     2341 aacaacaccc gtaggcaaac aatcacgccc taagatcaaa tttagcaaac ttgatttacc
     2401 acttgaaaac tgccctataa tagcgatatt aacattctta tccaaagaaa acacaagctc
     2461 ttttaattca ttttctaaag cataacttgc gtgcataaaa ggctcgttaa gttccttgca
     2521 aagctcttga atacgccctt taaaactatc atcaaaactc acactataag tattttcata
     2581 ggcttttata aaatcattta aaagattaat ctgcatttaa aagccccatt tcaagttgtt
     2641 ttaatttttc aattttttct aaattttctt ta
//
LOCUS       DARGEM010000154         2668 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.154, whole genome shotgun sequence.
ACCESSION   DARGEM010000154 DARGEM010000000
VERSION     DARGEM010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.154"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            37..720
                     /locus_tag="SFZ78_001677"
     CDS             37..720
                     /locus_tag="SFZ78_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8212511.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(812..1622)
                     /locus_tag="SFZ78_001678"
                     /pseudo
     CDS             complement(812..1622)
                     /locus_tag="SFZ78_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2051..2145)
                     /locus_tag="SFZ78_001679"
                     /pseudo
     CDS             complement(2051..2145)
                     /locus_tag="SFZ78_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          987 a          419 c          301 g          961 t
ORIGIN      
        1 tttaaatcaa aaaataaaat cataacggag taaaagatga aaacatttat aagcaatcat
       61 aaaaaccaat cttcttttat cactttattt gtttttacac ctttattttt tgtttttctt
      121 tattctaaag attttttaca catacaaccc aatgaaacta ttaaagaaaa taaatttaat
      181 atggcaatca aacattttgt acaaaattcc tccgatatga aaccgacaca acctacacaa
      241 actatacaag agccttcgaa tgtgcaacct aaagaacctg tgcaagaaat aaaaaaaata
      301 aaaccgagaa aagaaaaacc tatcgctaaa cctaaaaaaa taatccctcc agcaaatgca
      361 aaggcaataa gtcaacccaa aaaagataca aacatgcagc aacaaactcc acaagccagc
      421 tcttaccaaa gcgtatcttt aactagtaat agtgagcttt taaaagaaat aaaatcagca
      481 atcgatgaag ccctaatcta ccctagacaa gctagaaaaa tgcgtatgag tggggaggtt
      541 cttgtagaat ttacctggac aaaagaaaag aaattagaaa atttaaaaat acttaagcct
      601 tcaaaatatg attttctaaa taaaagtgct ttagaaacta tacgcatagc ttctaaaaaa
      661 tttccacaat atgaaaaaac ttttcatata aaaataccat tggtatataa attaagctaa
      721 atctttcaca atatactcta tttttaatac aaatcactcc agctttgcta acgcttagaa
      781 gtagaagctt cctagctaaa gctaactagt attagctaat tcgaaaggct ttgagtttat
      841 agtcctcaag gctaattcct aacccaaacg actttaatcc acgctttaag atattatttg
      901 cagcattaat atctctatgt aaagtattgc cacatttttc acaaagatac actctatctt
      961 taaacataag attttttttg atatttccac atacactaca agttttgctt gtatattgtg
     1021 gattgacttt tataaagaat ttgccattat gctttgcttt atactctaga tattgagaga
     1081 attgatagaa tgaagtatta agaatagatt tatttaaacc acttttagct tttatattct
     1141 ttaatttagc tcttttacac atattcttaa tttgcaaatc ttcaactgct agcaagtcaa
     1201 attcttgtat gagttttgaa gttatcttgt gataactatc ctttttgata tttgaacttt
     1261 tttcatagat tttatttaat tttaattgtg tttttttgaa attatggctt aactttgttt
     1321 tctccttttt tgtttttaat attctcctgc tttgttttct ttgcaatctt ttaatattca
     1381 gctctactaa gtagctttaa taactctcca ctgcttaagg taatctcatt gatatttaaa
     1441 tcaatgtcaa ctgctttttt aatatcaaaa tctttgctag atattaaaga aacatttgat
     1501 tcatcataaa tgatactaaa agctaaatag tatttattgt gatttttgat aatagtgatt
     1561 tgattaaact tataagtatt tggtaaatct ctgtgataac gcattttaaa aaatgtattc
     1621 ataagtctaa atatcttaaa cttagtagta tcactatctt tgattttgta ggcttgatta
     1681 ttccaattaa agctttgctt tgcaaattta gagtttttaa atttgggaaa gccttttttt
     1741 tatctctaat tgcttgctct aaggcacgag aagattaatc cttgcttgtt gggttacaac
     1801 acttttatag cttaattctc ttgcttttat aaggctagtt ttattgatta tctatcttac
     1861 ttgcctttaa ataactccta tcttttttat ctaaattctt atttttatcc cactgctctt
     1921 gctgtaaatt taaacaaata ttataggctt gatatagatg aaacattgat gattaataag
     1981 cttttgttgt tctttgttta ggtagaattc tatatttaaa acctttggtt atttgcattg
     2041 ctttgttcca ttagggcttt ttttcttttt ggttatatat tttttcttag ggtaattatc
     2101 ttctatgcct tgattttctg catatttttt aagagtttct agcattattc cgcataggta
     2161 ttctataaaa atactgatta tgtcaaatac ctaactagag ccgtacaact aacactgtaa
     2221 gcaattcatc tcccacttaa gaagtgagag ttttattgaa taaaaaaaga taaatttaaa
     2281 gcaagtaatc tttttttaga caacactaaa cccttgcatg tatttacagc aatatttatt
     2341 tcatcataaa caacccccaa cccataaaac ctcaataaac actataaaat aaacttgagt
     2401 gattaaaaat ccaacccaat tattgaataa acccaaccta cataataaaa tataaactag
     2461 acatataaag aacaattgac acataaaaat agattgaata aataaaccta tacaagtaaa
     2521 cataaaagat taattattga tacaaaagat tcaataaata aaaagaataa ttgagatata
     2581 aaaacatata aactaagcaa ctcaaacaac cattaaatta acccaagcta attaaaccta
     2641 taaacataaa aaaataatta aatataaa
//
LOCUS       DARGEM010000155         2613 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.155, whole genome shotgun sequence.
ACCESSION   DARGEM010000155 DARGEM010000000
VERSION     DARGEM010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.155"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(26..1354)
                     /locus_tag="SFZ78_001680"
     CDS             complement(26..1354)
                     /locus_tag="SFZ78_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8212512.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQDFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(1535..2470)
                     /locus_tag="SFZ78_001681"
     CDS             complement(1535..2470)
                     /locus_tag="SFZ78_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG8212513.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDKNK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
BASE COUNT         1025 a          467 c          285 g          836 t
ORIGIN      
        1 ataaaattta aaaaagatct atctcctata aagatagatc tttaaaaatt cttttaagaa
       61 aaatccaagc taaaatcaaa acacaaaatt cagcaaaaaa tggacttagc catactccat
      121 ttaaacccat aaaacaagat aaaaacaaaa gaaaaaacaa aggtataaat aaattttgcg
      181 ccaaacttaa aaccaaagaa aagcttgcct tattaaaagc tgtcaaaaaa gaaccactta
      241 gaacattaaa ccatgcaaaa aaataattaa aagcaaaaag catcaaagct gtataagcaa
      301 aagttttaaa atcttgattg ttttcttttg taaaaagcgt gattaaattt tctccaaata
      361 tcaatataag cactatagag aataaagata aaaatccccc tgcaaaaaat accactttta
      421 caatagcttt gattcttgaa aaatcttttt tagcatagtt gtaactaagc gcaggctgca
      481 ttgcatcacc catagcaata ataagcatta taataaaact atcaatatat aaaactatag
      541 aaaaggctgc cacggcttga gtatcagaaa tttttaataa aacaaaattt gcaaaaatac
      601 tatataaaga tcctgaaata ttgccaaaaa actcactgct tccgttataa agaatatttt
      661 taaaaatttt taaattcatg tataggcttg aaattttaag ctctaaattt tgaaacaaga
      721 aaggaaaaat tccaaaaata ccacctaaaa caagccccaa acaagttgca agagcagctg
      781 aaaataagcc ccaacccaac tcgactataa aaatataatc aagcactata ttgcttaatg
      841 ctataatcac attcattacc atactataag cagtttttcc gcaaattctt aaataattat
      901 ccaaagcaaa agaaagcata gtaaagggtg caaacaaagc aaaaacaaac atacattctt
      961 tagccatcgt tttaatctca tcgctaacat ttaaacaatc aatcaaaaca ggtcctaaaa
     1021 aatactctaa aattccaata aaacaagaga ttataaaaat aatcaacata cttgagctaa
     1081 atatctttct agctaaattc ttcttgccta aacctaaatg catagaaatt tgcactgctg
     1141 atcctatggc tatcatatca gccaaagcaa aagacatcat gataaaggga ataatcaagg
     1201 ctagtgccgc taaagcatca cttcctagat attttccaac aaaaattcca tcaactatat
     1261 aataaaaaga aataaaagcc atgcttataa catttggcac ggcacatttt acaaaaagcc
     1321 taaaagggct taaggtgcta aaaatacttg acataataat ccttaaaata tttaaaatta
     1381 aaaatatttt aaaccgctaa taaaatgcca aaagtcctaa tatgtaagaa tttaaataaa
     1441 gtaatttcgc aataagttta ttaatattta ttttattttg catatgaatt ttctagatta
     1501 aactaaaata aaaatttagc ccaaaggcta aattttaaag cacagaaaga attttcacag
     1561 cgtcatttaa ccctgtaact atacttgctc catttttagt agcaatatct cctgctacaa
     1621 agatgccttt aacattgctt tgtttgtttt tatccattaa aggcacgcct ttatcatcaa
     1681 cattaatccc acatttttgt aaaaaatcaa gtggagtaga accaccaata gcataaatga
     1741 ttctatcata aatatcactt gtaccatcgg taaaatttac tttagctttg ccattatcat
     1801 cttctacttc attaatgtca attcctaatt ttaactctac cttacccgaa tttccagctt
     1861 cgtgaatatc tttaagattt atatcattta atcttgtaaa ttctttttta cgataacaaa
     1921 ggctaacttg atttgaattt gccaaatcca cagcgtattc tgctgctgaa tttccgccac
     1981 ctacaacaag aattttttca tttcccaaaa ctgaattggc attaaaatta atgatttttg
     2041 ttaaagtcat aggaagtttg taatcaggtt tattaggttt acccattcta cctatagcaa
     2101 caataatgtt tttacactca taaacacctt tagctgtact tactaaaaaa actccatttt
     2161 catttttaac gctctcaact tcagaaccaa attcaacttc tatattgtgc tcttttaaag
     2221 cgttttgaaa agtttctata gtgctttctt tggtgccatc ttcaaaagga acatgtccgt
     2281 gattggttcc ttcgcatccc ttataagctt tatctactct tttgccatcc ttataaaatt
     2341 gcattaaagt ttgacaaatg ttatttgatt tttctagtat caaaacttct ttgtttttaa
     2401 gcttggcttc aactgcacag cctatccctg ttggacctgc acctactaca attaaatcta
     2461 tttttttcat ttatatttac ctttcaattc taaatttttt tgtataattt atcaagtttt
     2521 ttgtaaataa aggattaaaa atgcgaaatt tgcttgaaaa tattaagaaa aattctcaaa
     2581 aactacttaa cttaacgccc aaagataaag aaa
//
LOCUS       DARGEM010000156         2580 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.156, whole genome shotgun sequence.
ACCESSION   DARGEM010000156 DARGEM010000000
VERSION     DARGEM010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.156"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..487
                     /locus_tag="SFZ78_001682"
     CDS             <1..487
                     /locus_tag="SFZ78_001682"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8212514.1"
                     /translation="IPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKK
                     RFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQS
                     IDALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKN
                     Q"
     gene            408..1961
                     /gene="rny"
                     /locus_tag="SFZ78_001683"
     CDS             408..1961
                     /gene="rny"
                     /locus_tag="SFZ78_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8212515.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKA
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1970..2527
                     /locus_tag="SFZ78_001684"
     CDS             1970..2527
                     /locus_tag="SFZ78_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8212516.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
BASE COUNT          977 a          357 c          441 g          805 t
ORIGIN      
        1 tattcctttg cattatgaac caaacttaat aaaatttcgc catattctta ataaaaatta
       61 caaacttttt gttccattta tgcaagataa aagtttaaaa attgtaaaat taagattgcc
      121 ttttattaaa aaaaggtttg gggttttaga gcctatagat tcttttttta aagcaaaaat
      181 tgatttagct attgtgcctg taattggcgt cgataaaaat ttaaaaagaa taggacatgg
      241 gcaaggtttt tatgatagat tttttgaaaa tttaaattac aaacctcata taatatttgt
      301 ccaaagtata gatgctttaa gtcaaaataa tctaacacaa aagcatgata tttcaggaaa
      361 attatacata aacccttata aaaaatatta caagaaagaa agaaaaaatg atagaatcac
      421 ttatcgcact tatagccgct atagtcggac tcggtatagg atatttagtt gcaaaaaaaa
      481 tcaatgatgc caaatatgaa attttcgtag aacaagccaa agctaaagcc aaagctatag
      541 aatacgaagc ggagcttatt ttaaaagatg caaaaaattc aattcttaat gcagaattag
      601 aagttaaaaa aaaatacgaa gaaaaaactc acaaaattca aaaagatttt aatcaaaaat
      661 ttgatgatct ttctaaaaaa gaacaaaaac ttcagcaaga agaagaaaaa ctaaaagaag
      721 ataaagaata cctttgcaag tcacaaaaac acattcaaaa cttacaatct gatgttgata
      781 aattaaaaaa taaatatcaa gaaaaacttg acgatgtttt aaaaatttta gaacattcga
      841 caggacttac acaaaatgaa gccaaagaaa tcattcttaa aaaagcagaa gaaaattctc
      901 gcgagcaaat tgcacatata gtaagaaaat atgaagaaga agcaaaaaat gaagctaaaa
      961 gaaaagctaa tttcatcatt gctcaagcta cttctcgttt tgcaggtgaa tttgcagctg
     1021 aaagacttat caatgttatt aacattaaaa acgatgaact taaaggacgt atcattggta
     1081 aagaagggcg caatgttaaa accttggaaa tggttttagg tgttgatatt atcatcgatg
     1141 atacaccagg tgctattata gtaagttgtt ttaatcttta tcgccgtgct attgctacaa
     1201 aagttataga acttttagtt gaagatggca gaattcaacc cgcgcgcata gaagaaattc
     1261 acgaaaaagt gtgtaaagaa tttgatagtg ccattctaga agaaggcgaa actatagtta
     1321 tggatctagg tttaaataaa atacaccctg aaattgtaaa actcatagga aaactcaaat
     1381 accgagcaag ctatggacaa aacgctttag cacattcttt ggaagtggct caccttgcag
     1441 gaatcattgc tgctgagtgt ggtggagatg agaatttagc acgtcgtgcg ggaattttac
     1501 atgatatagg aaaagcatta acccatgatt ttgaaggatc tcatgtggat ttaggtgcag
     1561 aactttgcaa acgctacaaa gagcatcctg tagtaatcaa tgctatttac gcacatcatg
     1621 gacacgaaga agctacaagc atagaatcag cagctgtttg tgcagcagat actttaagtg
     1681 ctgcacgacc tggagctaga agagaagtgt tagaagcttt cttaaaaaga gtcagtgagc
     1741 tagaagatat cgctaaaagt aaagaaggaa ttaaaaatgc ctatgcaatc aatgccggaa
     1801 gagaaattcg cgtcatagcc aatgctcagc ttgttaatga tgatgaaagt gtacttttag
     1861 ctaaggaaat agcagctgaa attcaagaaa aaatgcaata tcctggtgaa attaaagtca
     1921 atgttatacg tgaacttaga gctgtagaat acgctaaata aggtttatta tgcaagatat
     1981 gattgatact ttaataaaat atggttatat tgttttattc ttttactctt tagggggcgg
     2041 gatggttgga attttagccg caggagtttt aagttctcaa ggaaaaatgg atcttagttt
     2101 ttgcattgct cttgctttta ttgctaatac cataggttca actttgcttt ttatacttgg
     2161 aaaatattac aaaaaagaca ttatgcctta ttttaaaaaa caccgacgca agatagccct
     2221 tgctatgata aaaacaaaac aacatggaat tattttactt gtaactcaaa aatttattta
     2281 tggtttaaaa actttcattc ccatagctgc aggtatggca aaatataatt ttattaaatt
     2341 ttttattatc aatactctag ctagtttggc atgggctatt gttctaggtt ttgctgctta
     2401 tacttttggg tatgttattg aagcaatttt tgataaactg agtttatatc cttatgctgc
     2461 tcctttattt ttattatttt tagccggaat aatttggctt tatttaagta aattttctaa
     2521 aaaataatgt ctctatggaa ttctttttct tactctttta aagaatttca ttatttattt
//
LOCUS       DARGEM010000157         2511 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.157, whole genome shotgun sequence.
ACCESSION   DARGEM010000157 DARGEM010000000
VERSION     DARGEM010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.157"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            4..1406
                     /locus_tag="SFZ78_001685"
                     /pseudo
     CDS             4..1406
                     /locus_tag="SFZ78_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661349.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
     gene            complement(1464..2276)
                     /locus_tag="SFZ78_001686"
     CDS             complement(1464..2276)
                     /locus_tag="SFZ78_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212517.1"
                     /translation="MAETIKQYYNLFSNALGQSFPNDKTSFSEADINSMPKGYAINGI
                     KSMDFNDPGNRMNITHLRDFSNSSIANIYQTPEQMKEAESLYIQSGSLIDGINGHSFG
                     LSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKSYGSGQPVESPKTTL
                     NPKVEAYNRAMAKESFNGDSIALNDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVA
                     WQNTSIGYGGAWFDNQFNQTKANGWKASNQSINSYVGSIMDRLNNLIGQTRV"
BASE COUNT          830 a          410 c          346 g          925 t
ORIGIN      
        1 tttatcaatt ctttattttt taatttttgt atagcttttt atcttatgag tgctttacaa
       61 tggtattctt ataaatttaa acgcgtgttt ttcattatca taaaccttta tggcatttgt
      121 attttttatt tatcccttat tttttattct tagcttttcc tttatactct ttggcatatt
      181 ttgcattgat ccatactccg attttgtatt tttggaataa aggcatagat aaaaagcttg
      241 tttttacaag taaggttaaa tggttttttg tttttgtttt tgtttataat gctattttta
      301 ccatccttgc tttgcgtttt tcttttcttt ttaatctttt tagtcttcct tttgctttat
      361 tgagtcttaa aatttatgag ttttttacaa atttatatta taaaaaacaa gccaaagcca
      421 aactaagagc caatgaaaat ttaaaaatca tactcattac cgcaagtttt ggaaaaacaa
      481 gtattaaaaa ttttttatac gaacttttaa aagatgactt taaaagctac aaaacaccac
      541 gatctgtcaa taccttgcta ggtatagttg ctgatatcaa taacaattta agccaagata
      601 ctcaaattta catagctgaa gcaggtgcta gacttaaagg cgatattgat gaaatcactc
      661 gttttttaca acctcacatc agcatagtag gagagatagg caatgcacat ttagagtatt
      721 ttaaaagtgt tgaaaatatc cgctcaacca aacttgaagc cttaaattcc aaaagactag
      781 aaaaggcttt tttacactct agcacccaaa aagaaggaga taaactcatc agcctttatg
      841 atgagaaatt aagtcttatt cattcaagtc ttgaaggttt agaatttaaa gtcgatatag
      901 aaaataaatc ctatgatttt aaaagtcaaa ttttagggga ttttaatgcg caaaatcttt
      961 gtgtttgtat actttgtgct cattatcttg gcataaaact agaaaaaatt caaaagcaag
     1021 ttttaaatat aaattccgta gaacatcgct tgcaagtgct ttcaagagag cctaaattta
     1081 tcatagatga tggttttaat ggaaatttta aaggtatgag cacaagctat aaactttgta
     1141 aaagctataa aggacgcaaa gttttagtaa gtcctggtat agtagaagta agcgaagaag
     1201 aaaatataaa acttgctaaa atcatcaatg agtgttttga tcttgctatc attagtgcac
     1261 aaatcaatgc tgaaattttc aaaaaagagt taaaaataaa aaccattata cttaaagaaa
     1321 agagtcagct agttcaaact ctagctaaag aaacaaaaca tggagatttg atactctttt
     1381 caaacgatgc acctagcttt atgtgatttg cataagtatt tgcaaatgtc atcattttta
     1441 atttgacttc gtgcaaatac ttcctaaacc ctagtctgcc ctataagatt attaagtcta
     1501 tccattatag atccaacata agaattgata ctttggttac ttgctttcca accattagct
     1561 tttgtttgat taaactgatt atcaaaccaa gctccaccat aacctatact tgtattttgc
     1621 caagcaactc ctttttccat tgcatatata tctgcatcaa gccagccatc ttgtgcataa
     1681 ccttttaaca aacttgcaaa atcaactttg cctgtcataa tgtcatttaa agcaatgcta
     1741 tcaccattaa aactttcttt agccatagcc ctattgtaag cttctacttt tggattaagt
     1801 gtggtttttg gactctcaac aggttgtccg ctaccatatg attttaaaaa actcataaat
     1861 aaagcttctt tagaatagct tccatcttca ttttgcggat aaactgacat atcaggatta
     1921 aattgccaat cttcaccttt agaaacattt ttgatttctt ccaaagataa accaaaacta
     1981 tgtccattta tgccatctat taaagatcct gattgtatat ataaactttc agcttctttc
     2041 atttgttcag gggtttgata aatatttgca atagaagaat ttgaaaaatc tcttaggtga
     2101 gtgatattca ttctattgcc tggatcatta aaatccatcg attttattcc atttatagca
     2161 taccccttag gcatagaatt tatatctgct tcactaaaac ttgttttatc atttggaaaa
     2221 ctttgaccta aagcattaga aaaaagatta taatattgtt ttatggtttc agccatatcg
     2281 atattagtat aatactcgct tacgcctaag tattcttttg tacttgaaac aacaggatca
     2341 ttttcagcag cttttttaat ctcatccaaa gtagatttat gtatcttaaa atcttcaggt
     2401 aatcctgcgg ctttgttaaa atcacttccc atatagccat ctttatctac actataacca
     2461 taggctgtat tggtagaagt gcttatatct gcttgtttgt attttagagt a
//
LOCUS       DARGEM010000158         2476 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.158, whole genome shotgun sequence.
ACCESSION   DARGEM010000158 DARGEM010000000
VERSION     DARGEM010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.158"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..832)
                     /locus_tag="SFZ78_001687"
     CDS             complement(<1..832)
                     /locus_tag="SFZ78_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212518.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     I"
     gene            902..>2476
                     /locus_tag="SFZ78_001688"
     CDS             902..>2476
                     /locus_tag="SFZ78_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8212519.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNS"
BASE COUNT          951 a          362 c          331 g          832 t
ORIGIN      
        1 aaatttttaa cattttaaaa ttagaatttt taaaaacaaa ctgatgcgta tcatcatgct
       61 ttgaaatttt acccaaagca taaaagaatt ctaaaaaatc ttgattttct aaattaaacg
      121 cttcattttc tctataaagc aaatcacaaa tatcaaaaaa attttgccct aaaaacatat
      181 gatatttttc aaaaactaaa cgccctaaca taggattatc ttctatttta aattctaaaa
      241 gttttttctt tttttcttca tcagtgatat taaaagtaca aagttctaaa gctttgataa
      301 aatcatgctc tttttgcaca tcttcattaa gctcaaaaag acattctaaa agttctaaat
      361 tttctttata agaacgaagt tttaaataaa caatttttaa aagttttaag gcttgtatat
      421 ttcttggacg cagttttaaa gcttgtaata aaacttcttt tgcacgctct aaaaatcctg
      481 ctttaaaata aacttttgct aaagaaagga aaataaattc tctttcttgt ttatctttac
      541 atttttcaag agcaatcaaa taaatttgag ttgctttttc aaattcccca cttttggtaa
      601 aaatttcggc caaaaaactt aaatttccaa aactcaagct actatttctt aacaactctt
      661 tatgagcgtt atccatttca aattttttta taaatttttc aagcttttgt tcttcatctt
      721 tgttagcaaa tattttccaa atataatttg caacagctac aacaaatact aaaatggtta
      781 aaattataag ccctactaaa gggtctctgt attctacaaa gaaaaaatcc atagtctcgc
      841 tctaaaaatt ttatgccaaa ttatagccaa atctttgtat aattttaaca aggtttgtaa
      901 aatgataact aaagaaagta tagaaaattt atcccaaaga cttaatattg ttgatattat
      961 agaaaattat attgaagtaa aaaaacaagg ctctagtttt gtatgtatct gtccttttca
     1021 tgcagataaa aacccgtcta tgcatatcaa tcctatcaaa ggtttttatc attgttttgc
     1081 ctgcaaggct ggtggagatg cttttaaatt tgtaatggat tatgaaaaat taagttttgc
     1141 tgatgcagtt gaaaaagttg caagccttag taattttact ttgagttata caaaagaaaa
     1201 acaagaaaat aaaaaagagc taaagtctat actaccaagc ttaaatgcgt attttaaaga
     1261 taatctcaaa caccacaaag aagttttaac ctatctttac cagagagctt taaatgacaa
     1321 agatatagcc aaattcgaat taggttttgc aggagcaagt gaagatagta taagattatt
     1381 gcaaaatcaa aaaattcctt tagaagatgc tatgagtgtt ggagctttaa aaaaagatga
     1441 aaataatgaa ttttacgcaa gttttatatg gcgtatcacc tttccaatct acgatcataa
     1501 agacttattg gtagggtttg gagggcgcac tttaaatccc aatgtaccgg caaagtatgt
     1561 aaattcaccc caaaatatac tttttgataa aagtagaatt ttttatgctt ttaacatcgc
     1621 taaagaaaat atagccaaaa aaaaagaaat aatagtatgt gaaggctaca tggatgcaat
     1681 agcttttcac aaagcagggt ttaacaatgc tgtagcagtt cttggaacag cattaaccga
     1741 acatcatcta cccttaatcc gccgttatga tgcaaaagtg attttatgtt ttgacaatga
     1801 tgaagcagga ttaaaagctg cgacacgatc tgcattttta ttaagcacaa acaaaataga
     1861 cggtaaagtg gcaattttgc aaggcggaaa agatcctgct gagctcgtag caaaaaatga
     1921 aagcacaaaa ctccataata tactcgatga aggaatagag cttggtgaat tttatatcag
     1981 acgcttaata tccactcatt ccataatttc tgctcttgat aaacaaaaag ctttagaaac
     2041 tatacaaaaa ttcaccttta atcttgaacc tttagtggca aattcttaca ctagtctagt
     2101 ttcaaattta ttaaaagtgg atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac
     2161 catacaaacc cctttaattt ctcaaaataa atacaatttt cctaaagaaa aaattcacat
     2221 tgcagaatta gaacttatag cctttttaaa acagcatcca gatatatgta acgattttaa
     2281 gcaaattagt gatagtgttt gttttaaaca taagatttta ttggataaaa ttttagaaaa
     2341 aaaaggttat gaagatagtg atattagaga atttgaaagt aaaaatattc gaaaaaattt
     2401 aaactatagc gaattcttgt taggtatttg caaggttaat ttagcttttt taaacaatgt
     2461 aaaaattaaa aattct
//
LOCUS       DARGEM010000159         2475 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.159, whole genome shotgun sequence.
ACCESSION   DARGEM010000159 DARGEM010000000
VERSION     DARGEM010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.159"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            7..885
                     /locus_tag="SFZ78_001689"
     CDS             7..885
                     /locus_tag="SFZ78_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG8212520.1"
                     /translation="MKFVNFKFNQKATLGVFNSSGKVVNLADLDINVRDMNELIINFD
                     EFKHKFKDLDSKTAYEIPKEDYLAPIIEPRQDIICLGINFLDHAKESAQFKGEKFEER
                     EYPVYFGKRCNQATAPFGSISLHADVTSQLDYECELAFILSKDAYKIKAEDAKDYIFG
                     YTIINEISARDLQKRHKQFYRAKSLEGSTIMGPYITSVDEIAYPPELHLKSYVNKELR
                     QNSNTKFFIFDIGYVLEELSSGMLLKAGTIISMGTPSGVGMGLNPPVFLKKGDEVRCV
                     IENLGELCNKIKNINY"
     gene            949..1863
                     /locus_tag="SFZ78_001690"
     CDS             949..1863
                     /locus_tag="SFZ78_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8212521.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            1853..>2475
                     /locus_tag="SFZ78_001691"
     CDS             1853..>2475
                     /locus_tag="SFZ78_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8212522.1"
                     /translation="MTNKKSSFLIKFIILSILVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNS"
BASE COUNT          950 a          367 c          369 g          789 t
ORIGIN      
        1 ttataaatga aatttgttaa ttttaaattt aatcaaaaag ctactctagg ggtgtttaac
       61 tcaagtggaa aggtcgtaaa tttagccgat cttgatatca atgttcgtga tatgaatgaa
      121 ttgattataa attttgatga atttaaacat aagtttaaag atttagactc taaaacagct
      181 tatgaaattc caaaagaaga ttatctagct cctatcatag aacctcgaca agatatcata
      241 tgtcttggga tcaatttttt agatcatgcc aaagaatctg cacaatttaa aggcgaaaaa
      301 tttgaagaaa gagaatatcc tgtatatttt ggaaaacgct gcaatcaagc cacagctcct
      361 tttggcagca tatctttaca tgctgatgta acttctcagc ttgattatga atgtgagctt
      421 gctttcattt taagtaaaga tgcttataaa atcaaagctg aagatgcaaa ggattatatt
      481 tttggttata ccatcatcaa tgaaatttca gcacgagatc tccaaaaacg ccacaagcaa
      541 ttttaccgcg caaaaagcct tgagggaagt actatcatgg ggccttatat cacaagtgtt
      601 gatgagattg cttatccacc tgaactccat ttgaaaagtt atgtcaataa agaattacga
      661 caaaactcca atacaaaatt ttttattttt gacatcggat atgtcttaga ggaactaagt
      721 tcaggaatgc tcttaaaagc cggtaccatc atatcaatgg gaaccccaag cggtgtagga
      781 atgggtttaa atccgcccgt ttttcttaaa aaaggtgatg aagtacgctg tgtaatagaa
      841 aatttaggag aactttgtaa taaaataaaa aatatcaatt attaaataat ttactaaaat
      901 tatactataa tggcatttta aaaacttaaa ttaaggcaga aatttatcat gaaaaaaata
      961 ataatgattt tatgtttatc ttatgcaaat atagtctttg cagtagatat gataacccct
     1021 attccaaatt ccatctctta tgataaagaa aaagctaaac ttggaaaaag tctttatatg
     1081 gataaaagtt tatccaaaga tggaaaagtt tcgtgcaata cttgccatag gcttgatcaa
     1141 cacggtgttg atgggcttga attttcaata ggagttgata atcaactcga taaacccttt
     1201 aacactccta caacctttaa ttctgtgttt aattttgtgc aattttggaa tggcagagct
     1261 aaagatttaa cagaacaagc tatgggacct tttttcaatc caaaagaaat ggggctaagt
     1321 cctgaacttc ttttacaaaa agttaattca aatgaaaatt atgtaaaaac ttttaaaaaa
     1381 ctttatggag aagttacggt agaaaacata gcccttgcag ttgctgaatt tgaaaaaacc
     1441 ttaatcaccc caaattctcc ttttgatcgc tatcttagcg gggatcaaaa tgctatttca
     1501 actcaagcta aaaaaggtta cgaagatttt aaagctaatg gctgcatctc ttgtcatcaa
     1561 ggtcaaaata taggtgggaa tatgtttcaa aaaatcggta tttttgaaga atacccaaac
     1621 caagaagatt tagggcgtta tgaaatcaca aaaagagaag ctgataaaat ggtatttaag
     1681 gttcctagtc ttagaaatat agccaaaacc gcgccttatt ttcatgatgg ttctatacct
     1741 actttagatg cttgtgttca gtttatggct tactatcaac taggaaaatt tttagatcaa
     1801 gaaacagttg acaatatagt tgcattctta gaaagcttaa caggagaata tcatgacaaa
     1861 taaaaaaagt tcatttttga taaaatttat tatcttatct atactagttt tgactttcat
     1921 tcttgtttta ttggctatta tttttaataa ctattcttca tctaaaaata acaaagactt
     1981 gataaacata gttcagcaac tagaaatttc agatgaaaaa atcaattcta tttttcaaaa
     2041 tagttttaat tttatcaact acgatccaag tgtgcaagca ataaaaaaaa tgcaagaaaa
     2101 ctttacaaaa cttaaaactt ttgggattga cataaacaaa gcagaagaaa tttttaatgc
     2161 caaactaatc cagcttaatt attttaaatc cgcaaattcc atagcagtaa attcaaaact
     2221 ttatttattt gaactagcta aaaattattt tgaagaattg gaacaaaacc atgaaacaaa
     2281 taaaaacaac tataaaacaa tgagttctat gttaagcgtt ctttcaactg aaaatatttt
     2341 acaaaaaaca acactaaatc aactcaacaa tcttatgaaa gaaatcaaaa atgatacaaa
     2401 aagtgaaaat ttacaacttt ttttaaaaca ctataaaatg attgtaaagc aaatttctat
     2461 tatgcaagat aattc
//
LOCUS       DARGEM010000160         2474 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.160, whole genome shotgun sequence.
ACCESSION   DARGEM010000160 DARGEM010000000
VERSION     DARGEM010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.160"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..290)
                     /locus_tag="SFZ78_001692"
     CDS             complement(<1..290)
                     /locus_tag="SFZ78_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8212523.1"
                     /translation="MSDFCIIGKNINMYLVDDEDAGFIFELRSDVVKNKFLNKIDNDI
                     KKQREWIRLYKKREKNKKEFYFTIRNKNNEKLGLVRLYDFIDDSFCWGSFII"
     gene            complement(312..756)
                     /locus_tag="SFZ78_001693"
                     /pseudo
     CDS             complement(312..756)
                     /locus_tag="SFZ78_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
     gene            complement(746..1150)
                     /locus_tag="SFZ78_001694"
     CDS             complement(746..1150)
                     /locus_tag="SFZ78_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxcM-like domain-containing protein"
                     /protein_id="HEG8212524.1"
                     /translation="MKNYKILKLDAIKDDRGKLVALESNKEIPFEIKRVYYIFDTDPN
                     FPRGAHAHKNLEQVLIMMSGSCDIILNDGKNCEKICLNRPDMGLYIGKNMWREMKNFS
                     YGAKLLVLASDFYDEKEYIRNYDEFLRNINDT"
     gene            complement(1147..1596)
                     /locus_tag="SFZ78_001695"
     CDS             complement(1147..1596)
                     /locus_tag="SFZ78_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdtA/QdtA family cupin domain-containing
                     protein"
                     /protein_id="HEG8212525.1"
                     /translation="MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLNDS
                     IRGDHANLNSEFIFIALNGSCEILIDDGQTKQKIILNDKTKGLYIDKMIWKQMYNFSK
                     DCILLVLTNTYYDEKEYIYDYKYFCELKNNIGRRGGVCYKNHALKVA"
     gene            complement(1599..>2474)
                     /locus_tag="SFZ78_001696"
     CDS             complement(1599..>2474)
                     /locus_tag="SFZ78_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEG8212526.1"
                     /translation="YVFIQGDISDVFLVNEIFSKYKINAVINFAAESHVDNSIKNPDI
                     FIKTNIYGTWNLLNSAYKTWFLEPFLKKDKFKQSFFYQISTDEVYGSLGENGKFTEDN
                     AYAPNSPYSASKASADMLVRSYHHTYGLNAVISNCSNNYGPFQHDEKLIPTIIRNALN
                     NAQIPIYGDGKNIRDWLYVKDHCVAIESIYKYAFEKIKENNSFFDVFNIGTNEEWQNI
                     DIANKICSYLDNVLPKNTSYKEQITFVKDRAGHDRRYAIDPTKLQRVIGWKAQENFNS
                     GLDKTIQWYIKKYKG"
BASE COUNT          808 a          419 c          225 g         1022 t
ORIGIN      
        1 tttattataa aacttcccca gcaaaaagaa tcgtcaataa agtcatacaa tctaactagg
       61 cctaactttt cattattttt atttctgatt gtaaaataaa attctttttt atttttttct
      121 ctcttcttat ataatctaat ccattctctt tgctttttta tatcattatc tattttgttt
      181 aaaaatttat tttttacaac atcacttctg agttcaaaaa taaatccagc atcttcgtca
      241 tcaactaaat acatattaat attttttcca attatgcaaa aatcactcat ttgcataatc
      301 cttgtaaaaa attattgttt tgaaataatt ttgcaataat aagttgtatt ggctgcaata
      361 tcttttgtaa cgatagcccc ccccccctat cactgcattt tctcctataa ttacacctgg
      421 taaaattgtc gcattagcac caatactcgc gcctttttta attatagttt ttaaaaattc
      481 ttttggatat tgttttgatt ttggatattt atcattgcaa aatgttacat ttggccctat
      541 aaaaacatta tcttctattg ttataccatc ccatatttga accccgcact taatcgtaac
      601 attatctcca atcacaacat cattttctat aaagcaatga gaacatatat tgcaattatc
      661 tcctatttta gcattaggta aaactacgca aaattgccat atatttgtat ttttacctat
      721 attactactt tgtacatctg acattttatg tatcattaat attccttaaa aattcatcat
      781 aatttcttat atactctttt tcatcataaa aatcacttgc caaaactagc aattttgctc
      841 cataagaaaa atttttcatt tctctccaca tatttttacc tatataaaga cccatatcag
      901 gacgatttaa acaaattttt tcacaatttt ttccatcatt tagtattata tcacaagaac
      961 cactcatcat tataagcact tgctctaaat ttttatgtgc atgtgctcct cttggaaaat
     1021 ttggatctgt atcaaatata taatacaccc tttttatctc aaatggaatt tctttattgc
     1081 tttctaaagc tactaattta cctctatcat cttttatggc atctaacttt aaaattttat
     1141 aatttttcat gccactttta aggcatgatt tttatagcat accccccccc gccgccctat
     1201 attatttttt aattcacaaa aatacttata atcataaata tactcttttt catcataata
     1261 agtatttgtt aataccaata aaatacaatc tttagaaaaa ttatacattt gtttccatat
     1321 cattttatct atatataagc ctttggtttt atcatttaat attatttttt gttttgtttg
     1381 tccatcgtct attaaaattt cgcaacttcc atttaaagct ataaaaataa attctgaatt
     1441 taaattagca tgatcacctc ttattgaatc atttaaaaaa tcatatatat aaaaaattct
     1501 tttaatttca aatggacaat ttacatcttt ttgatggaca tttaatattg aatttttact
     1561 atttatggtt ttgaatttta atattgtata gttcaaattt aacccttgta ttttttaata
     1621 taccattgta tagttttatc taaaccgcta ttaaaatttt cttgtgcttt ccaacctata
     1681 accctctgta attttgtcgg atctatggca tatcttctat catgacctgc tctatccttt
     1741 acaaaagtaa tttgctcttt ataagaagta ttttttggca atacattatc taaataagaa
     1801 caaattttat tagctatgtc tatattttgc cattcttcat ttgttcctat attaaataca
     1861 tcaaaaaagc tattattttc ttttatcttt tcaaaagcat atttataaat actttctata
     1921 gccacgcaat gatcttttac atatagccaa tctcttatat tcttaccatc tccatatatt
     1981 ggaatttgag cgttatttaa tgcatttctt attatggtag gtataagttt ttcatcatgc
     2041 tgaaaaggtc cgtaattgtt agaacaatta gaaataacag catttaatcc ataagtatga
     2101 tgataacttc taacaagcat atcagcactt gcttttgaag ctgaataagg ggaatttgga
     2161 gcataagcgt tatcttctgt aaattttcca ttttctccca aagatccata aacttcatct
     2221 gtacttattt gataaaagaa actttgttta aatttgtctt ttttaagaaa aggttcgaga
     2281 aaccaagttt tataagctga gtttaataaa ttccaagttc cgtatatatt tgtttttata
     2341 aaaatatctg gattttttat agaattatct acatgtgatt ctgctgcaaa atttataacc
     2401 gcatttattt tatatttgct gaaaatttca ttaaccaaaa aaacatcact tatatctcct
     2461 tgaataaata cata
//
LOCUS       DARGEM010000161         2461 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.161, whole genome shotgun sequence.
ACCESSION   DARGEM010000161 DARGEM010000000
VERSION     DARGEM010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.161"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..157
                     /locus_tag="SFZ78_001697"
     CDS             <1..157
                     /locus_tag="SFZ78_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212527.1"
                     /translation="LAKFASKVAEFYVFDSRVLMIVDKLENFRKFYKLKIDGIILKDN
                     IDNFPKN"
     gene            202..>2461
                     /locus_tag="SFZ78_001698"
     CDS             202..>2461
                     /locus_tag="SFZ78_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8212528.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGIN"
BASE COUNT          809 a          300 c          397 g          955 t
ORIGIN      
        1 acttgcaaaa tttgctagta aggttgcaga attttatgtt tttgatagta gggttttaat
       61 gattgttgat aaattagaga attttagaaa attttataaa ttaaaaatcg atggaattat
      121 tttaaaagat aatatagata attttcctaa aaactgataa attcttttgt aaaataagcg
      181 ctaattgacg aggtttaaat aatgcaaaaa aaatcttttt tgaaaattta cggattaatt
      241 ccttttttac ttatagcatt catcaatgct tttgtggatt tgggacataa aattattatt
      301 caaaatacta tttataaggc ctatgaagga agtgagcagt tatttttaaa tgctatagtt
      361 aatgctttga ttttacttcc ttttattctt atgctttctc cttcgggttt tttagcggat
      421 aaatatccaa aaaatattgt aatgaaaatt tcagcaattt tcaatgttat actcacttta
      481 ataatttgca tttgttacta tagcggtgct ttttggatgg cttttatttt tacttttata
      541 atgggagcac aagcagcgat ttattcacca agtaaatacg gttttattaa agaactcgtg
      601 ggaaaagact ttcttgctat gggtaatggt gtaattaatg cggtaagcat tgtggcaatc
      661 ttagcgggaa tggctttatt ttctttaagc tttgaaagtc tttatagttc tatgtataat
      721 caaacagatg aaattttaaa agaagtagcg cctttaggaa ttgtgctaat tttattttct
      781 tgtatcgaag tattttttgc gtggcgttta cctaagctca aacaaacaaa taaagattta
      841 gtttttaata aaaaagacta tattcgtgga aaacttctaa taaataatct taagcttgtt
      901 tttaaaaata aaactatttg gctttgcata attggaattt catttttttg ggctatatct
      961 caactttatc ttgtcagctt tcctgtcttt gctaaaaatg aacttttcat agaaaatact
     1021 ttttatgtgc aaatttcact cgctttttct ggtataggag tgattttagg ctctttagta
     1081 gctggtaaat tttcaaaaaa ttatatagaa cttggattta ttccacttgg tgcattgggt
     1141 atgtttttaa tggctttttt aatgccttat tttataagtt tattaagtta tagtttttta
     1201 tttttctttt ttggattttg cggagccctt tttatcattc ctttaaatac tttaatccaa
     1261 tttcatgcta aagaaaatga attaggacaa attcttgcag gaaataattt ttttcaaaat
     1321 attgccatgt tgggattttt gctcttggca actttatttg taaaatttga aatcaatgtg
     1381 atttatttgt tttattttat tgctttggta acctttatag gaagttttta catactttta
     1441 aaactcccct tttctttagt gcgtatactt ttaagcatag cttttttaca acgataccgt
     1501 ttacttgtgg aaggttttga aaatatacca gaaaaaggtg gagctttact tttgggtaat
     1561 catatttctt ttattgattg ggctgttgta caaatggcaa ttccaagaaa aatttatttt
     1621 gttatggaaa gaagtattta ttctaaatgg tatattaaaa tttttcttga taaatttggt
     1681 attattcctg tatcaagtac aggaagtaag acgagtttag aactgatagc aaagcatatt
     1741 aaagaaggta atttagtttg cttatttcct gaaggtacac tttcgcgaca tgggcaatta
     1801 aatgaattta aagcaggatt tgaattagct tgtgaatgtt taagtgaaga tgatggaaaa
     1861 attattcctt tttatataag agggctttgg ggtagcgctt tttcaagaag tgatgaagaa
     1921 ttttcagcaa gaaaccgcac tttaaataaa agaaaaattg ctatagcttt tggtaaagct
     1981 atgcctttgc attctaaaaa agatgaagtt aaagctaaag tttttgaact ttcttttatg
     2041 gcttggaaat cacaatgcga agctatgcat actatagcaa gagcttggat agatacagct
     2101 aaaaaaaatc taaatcaaat agctattatc gatacactag ctggagatat ttcttataga
     2161 aaaatgttga ctcttagttt atttcttaat ttttttatta aaagaaaatc caaagaatta
     2221 aacattaacc ctcagcgtgg aagttacgct cctaaagagg aagctatagg aattttacta
     2281 cctgcttctt ttgcaagttc tttaaccaat ctatctgttt taatcgcaga aaaaattgca
     2341 gtaaatctta atttcactgc tggagaaaaa gctctaaaag cagctataaa aaatgcgcaa
     2401 atttcacaaa tttatacttc taaaactttt ttagaaaaat tagcaaataa aggtataaac
     2461 c
//
LOCUS       DARGEM010000162         2424 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.162, whole genome shotgun sequence.
ACCESSION   DARGEM010000162 DARGEM010000000
VERSION     DARGEM010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.162"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..1667)
                     /locus_tag="SFZ78_001699"
                     /pseudo
     CDS             complement(1..1667)
                     /locus_tag="SFZ78_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
     gene            complement(1869..2378)
                     /locus_tag="SFZ78_001700"
     CDS             complement(1869..2378)
                     /locus_tag="SFZ78_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8212529.1"
                     /translation="MHFTIFHIIVFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVNGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
BASE COUNT          837 a          360 c          345 g          882 t
ORIGIN      
        1 gcttcaatag ctgcatttaa agctaaaaga ttgatttgat ctgcaatatc acctataata
       61 cctgtaacat ttttaatctc ttcagattga gtgataacat cactagtttt aactgaaaca
      121 ttttgcatag aagaagtgat ctcttctaaa gctgctgcag tttcttctaa agattgagct
      181 tgagaatttg aagaagtggt taagctttga acagcagttt gtaattttcc actttcatta
      241 gctaaagcat tagcaaagtc tgaactttgt tttagcattt taatgatttc ttgtcctagt
      301 gcattagtag ttacctctac agctccattg gcatctttta cttcagtagt aaagtcaaga
      361 gatttataac tattaaatac tctttgaatt tcattcatat cagaacctac tctagcctgt
      421 aaagcatcaa gaagtctatt tagaacattt tttaattcta ttaattgtgg gtttcttgga
      481 ttagcagtaa ttcttgctgt taaattacca ccttctacaa ctgatacggt ttgaactgat
      541 tctttaacgg cttgattgtc ttgttctaag cctcttttag tagcaagaat gttttcattg
      601 atagcatttg agatttgtcc aaattcatca ttgcttttta cttctatagt agaaacattt
      661 tttgttttat agttgataaa atcaaagaat gaagttaaac ctgtttggat agctgcaagt
      721 ggggagaggt attttgatac gatgaaataa aggaggatga cgctaagaat gcttgcaaaa
      781 acaacaatca cagtttgtat aaatgcaatt ttataaactg gagcttctat ttgttctatt
      841 ggctctccaa cgcaagcagt ataaattcca gaaacctttg tgcatacagc aaatctttca
      901 ttaccatctt ttggtctagt atactcaaaa ggttcaagat cctctttagt tttagcaaga
      961 tttgcaatag tactaatatc ataaccttgt tgcaaaagag ttttgtctgt agaaacaaat
     1021 actttatttt attcatcaaa tacaaaagtt ctacctggta aattttcaaa ttcagcttgc
     1081 aaatctgccg caagaatatc tacagccaaa acccctataa atttaccatc tttataaagc
     1141 ggaatagaat atgtaaagca aggtaaattt gtagttacat caatataaga tggggtaata
     1201 taaagtttat ttgttttaac tgcttctata taatactctc ttgttctagc atcataatta
     1261 tcagcttttc cataagttcc aaaatctaaa tttttagcat cagagtctgg atcgcttaca
     1321 acaagttcgc catttggttg agcaatataa actgctaaga atcttccagc atctctaaaa
     1381 ttctttaaat cttttccaac ataatgcatt aaagcatctt gactatctaa ctgttctata
     1441 ggatgcttta aaatactttt agctaaactt tcaagagcta aagaatttct tgccttaaaa
     1501 gactctatag aatttttagc cgttttaaca taatttattt cagcattcac aacttcatga
     1561 aaaattgctt gctttacaaa tataaatgtt acaacaccta aaattatcaa acacactact
     1621 gcgattaaat ttgcaatcag tgaaaccttc aattttacac ttttcataat ttaagcgctc
     1681 ctttctaata ttattttata gagatatcta cataaagttt tagaattata aattaaaaaa
     1741 tctagatttt tacttaaata taaaagtaat aaaaaatttt atttaaataa agctcgttag
     1801 catatcaaaa aaaaataaaa ttaatataaa attatttttt atagatgttt taaaactatt
     1861 taacaatatc aaatacattt taaggtgtga taaaattcag gattattaaa agttggagga
     1921 aaaggaacgc tagctctaaa ttctttatag gtattacccg ggagtgtgtc tatgatttct
     1981 atagtataag aaacacttgt attttgcatt ttagcgttac ggatattttt atcattgaaa
     2041 atttcacctc ctacttgttg ttggtttaat atgctaagta tcaaatagca ttttttgatt
     2101 tcaaatttag taagattttg aacttttcca tttactataa cgctttcatg tcttagatct
     2161 cttgtatagg ttagtttgct aagatcggct tgagtggtga attgattgat tgtcagaaaa
     2221 atagaatata tcaaaagtgc ggtaaaaata gtagctatgg tataagaaat caaagccatt
     2281 tctttttgtt tgacttttag aaagattaaa atacaaatca aggcaaagca aataagtaaa
     2341 atgataaaaa ctataatatg aaaaattgta aaatgcatta aaaacactcc gaaactaagc
     2401 gtatggtata gttattttca tagt
//
LOCUS       DARGEM010000163         2358 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.163, whole genome shotgun sequence.
ACCESSION   DARGEM010000163 DARGEM010000000
VERSION     DARGEM010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.163"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..488)
                     /locus_tag="SFZ78_001701"
     CDS             complement(<1..488)
                     /locus_tag="SFZ78_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8212530.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGDLDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFED
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVRMKLINFILFTALGSAIWVAILVFLGYY
                     IG"
     gene            complement(569..796)
                     /locus_tag="SFZ78_001702"
     CDS             complement(569..796)
                     /locus_tag="SFZ78_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212531.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(807..2258)
                     /locus_tag="SFZ78_001703"
     CDS             complement(807..2258)
                     /locus_tag="SFZ78_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG8212532.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGAGSGATTILDDDDGVVNLGDLTIANLHFEN
                     YKAFGTNFNYFLSLGYSHGNNSQLSPTLSGILQTQGYNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
BASE COUNT          775 a          472 c          338 g          773 t
ORIGIN      
        1 tgccctatat aataacccaa aaatacaagt atagccaccc aaatagcact accaagtgca
       61 gtaaaaagta taaaatttat aagtttcatt cttactaaac ctgcaggcat agaaatatac
      121 tgacgaatcc ctggtaaaag acgacaagta aaggttgaaa attccccgtg tttgttaaaa
      181 aaatcttcaa atttagcaaa tttagcttca tttataccaa aatacttacc ccattttaat
      241 acaaaatttt tgccccaaaa aaagcaaata tagtaattaa tcaaagctcc taaaacagaa
      301 cctaaagtcc cgctaagtat gcaaagagtg atatcaagat cacctttatg tgccaaatat
      361 ccagcaggta tcataacaac ttcacttgga aaaggtataa aacaactctc taaggtcatt
      421 aggataataa tacccaaata cccccaagca ctagccgtct caacaataaa agaaatgatt
      481 tcttgcatat tagccttatt tgaagaaaat tttaaaaaat tgtagcttaa aagattaaac
      541 agtaaaaagc ggttttacac cgcttttttt atttacctgc aaccgaaact tgatttggat
      601 tgtccgctgc acgagcgatc atacactctt ttaaaacagc agcatcagct ggatcgctaa
      661 cttttttatt aatccagcgt tcaacttgtt tcattgtttt tgactctggc tctggagctt
      721 cgtattttgc catcaaactt gcacaatcag ccaaagcaat gataggtaat aaacttgcaa
      781 aaagtatttt tctcatcttt tgctccttag aattttacat tatacattaa catgatatta
      841 tcagctcttg ctttatcttt tttcgctcca ccaaatggca agccacgatt accccaaata
      901 ttttggatat tagtataact taagcgtaag aattgatatc tatcaagttg ataaatcaca
      961 taaaaatcat gtgctgttcc tcttgtcatt cttatattaa gtggatcgtt gatacttgga
     1021 cggctcatag tataccagta tctacttccc cagaagaact cataccctac ttttaaagcc
     1081 ttggtaaaat catagcgtcc gcctacatgc acagcataac catcttcttc attaaacttg
     1141 ccattataac cttgtgtctg aagaattcca cttaatgtag ggcttaattg actgttgttc
     1201 ccgtgagaat aacctaaaga tagaaaataa ttaaaattcg ttccaaaagc tttataattt
     1261 tcaaaatgaa gatttgctat agttaaatct cctaaattta ccacaccatc atcatcatca
     1321 agaatagtag tagcaccgct accagcacca ggtaaagcaa ttggaccatt gttaagtggc
     1381 aaagcaaaat cgcttaaata tgcaatatta aataatatta aattatctcc cataccttct
     1441 ataggaagct ctccttctac tgcagcatag taaagatttg catcagcatc tttttgatcg
     1501 ctcatccagt ctcttacctt gccttcttca tcccattgat aagttttacc ataagctgca
     1561 cggatagcta ccttatgatc ttgcaaactt tcaggcttat aagtgatcac tgctgcatca
     1621 cctagagcat taatcgctaa ggctggataa gttgattgtc ttagagcatt gtttctaaga
     1681 ttacttcctg gaccatcggt tcctggttgt cttcctacag tcgcaatcca ttcaggtgtg
     1741 atgtagtagt caagataagc tctatctaca taaagtacag gcccacttga tcttgtgttt
     1801 cttcctgcat ctaagtcaag tggacttcca ctccaaccca tttgagacca gtttttagcc
     1861 atagataaac gaccatagaa tttggtttta tcattaatat cagcattcat atttaaatga
     1921 agctcattca tccatttgtt attagcacta taatcttgtc cgctaacttt atagtttgta
     1981 tttgaaactg ctgttgaaaa ctcaagtcca aatttaacct tgctcaaagc agcttggaat
     2041 tctgtttcat cggctctatc attaagatca gcaagttcag cttttacagc ttcattttgc
     2101 ttagcttgag cttccctttc ttttctgatt tgtgcaagtt cagcttgaat ttgtgcaagc
     2161 tgtttttgaa gcttggttat ctcatcatct gtatttttag caaaaagtga agatgaaaga
     2221 agacaagcac ttaaaataag tgaaaactta gttttcataa tcataactcc ttgtaatttt
     2281 gttacattta gcaaattaaa attgtgatta tagaaaaaaa agtttaaaaa aaaattatac
     2341 attaatcatt tttagcta
//
LOCUS       DARGEM010000164         2357 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.164, whole genome shotgun sequence.
ACCESSION   DARGEM010000164 DARGEM010000000
VERSION     DARGEM010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.164"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            31..2133
                     /gene="ccaA"
                     /locus_tag="SFZ78_001704"
     CDS             31..2133
                     /gene="ccaA"
                     /locus_tag="SFZ78_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG8212533.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
     gene            2244..>2357
                     /locus_tag="SFZ78_001705"
     CDS             2244..>2357
                     /locus_tag="SFZ78_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEG8212534.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSII"
BASE COUNT          886 a          285 c          404 g          782 t
ORIGIN      
        1 ctaaattttt tattttttag gagttataag atgtttaaat ctttaaatat aggtttaaaa
       61 cttatttttt ctgtggcagc tgttgttgtt attggacttg ttattttaat ttcattaatc
      121 acaaaacaag taagtcaaaa tattaccaaa aatacagaag atattcttgc ttctatcacg
      181 aaagaatatg ctactcaaac tcaaggaatt tttggggaaa tgatcgcttt aaataaaagt
      241 atttcaggta ctttaacaga aatgtttaga tcaacctcta aagaagattt agatatagac
      301 aatataacaa atattataac caatactttt gataatagtg cttattctaa ttttacttat
      361 ttatatctta ttgatccgcc agaatacttt aaagaagaga gtaaattttt taatactcaa
      421 agtggaaaat ttgttatgct ttacgctgat gaagaaaagg ataataaagg cggaataaaa
      481 gcaatacaag ctagtgatga aatagctaat ctgcaagttg tgcaagatat attaaaaaaa
      541 gcaaaatatg gggaaaataa agtatatata ggccgtccta ttaagatgaa tttagaaggt
      601 caagattttg atgctgtaaa tgttgctatg cctatttttg atcgaaaaaa tcaagttgta
      661 ggtgtcatag gcatgacttt agatttttca gatattgcta cttatctttt agaccctaaa
      721 ggtcaaaaat atgatggtga attaagagtt cttttaaatt cagatggttt tatggcgata
      781 catccaaata aaaatctagt tttaaaaaat ttaaaagata tcaatcctaa taaaggtgca
      841 caagaaactt ataaggccat aagtgaagga aaaaatggag tttttaacta tatagcttct
      901 gatggtgatg attcttatgc tgcgattaat agttttaaag tgcaagatag ttcttgggca
      961 gttttggtaa ctgctcctaa atattcagta tttaaaccct taaaaaaatt acaattaatt
     1021 attcttggtg catcttttat ttttattttt gttgttttag gagtggttta ttattgcgta
     1081 agaaaaattg tcgcatctag attgcctgtg attcttagtt ctttagaatc atttttccgt
     1141 tttttaaatc atgaaaaaat tgaacctaag gctattgaaa ttcgtgctaa tgatgagcta
     1201 ggagcaatgg gaagaatcat aaatgaaaat attgaaaaga ttcaaatatc tttagaacaa
     1261 gatcaaaatg ctgtagatga atcggtgcaa actgctagag aaatcgaaaa gggtaattta
     1321 actgcaagaa ttactaaaaa tcctataaat cctcaattag tagaacttaa aaatgttctt
     1381 aataggatgc ttgatgtttt acaaagtaaa attggttcta atatgaatga aattaataga
     1441 gtttttgata gttataaggc tcttgatttt agtacagaag tatttaatgc taaaggtgaa
     1501 gttgagatta caactaatat tttaggcaaa gaaattaaaa agatgctttt ggcttcttca
     1561 aattttgcta aagatttagc caatcagtca gaagagttaa aaaattctat gcaaaaactt
     1621 gctgatggct ctaatgcaca agcgagttct ttagaacaat cggctgcagc tgtggaggag
     1681 attaattctt ctatgcaaaa tgtaagtgga aaaacagttg aggttgcttc acaagctgat
     1741 gatataaaaa atattgtcaa tgtgattaaa gatatcgctg agcaaacgaa tcttcttgct
     1801 ttaaatgcag ctattgaagc tgcacgtgct ggagaacatg ggcgtggttt tgcagttgtt
     1861 gcagatgagg taagacagct tgcggaaaga acaggaaaat ccttatctga aatcgaggca
     1921 aatattaata tacttgttca aagcgtaaat gaagtagcag aatctgtaaa agaacaaaca
     1981 gcaggaatca cacagattaa cgatgctata gcacaacttg aaactgtaac taaggaaaat
     2041 gtcgaagttg caaatgtcac caataatata acaaatgaag tcaatcaaat tgctgcggca
     2101 attcttgaag atgtgaataa aaaaagattt taaaaaagct catttttgag cttttaaatt
     2161 ttttctatat tatttaaaat ttttaaacac aaaacaagta ataaaataat attatttttc
     2221 aaagctaata tcaaggaaaa ataatgaaaa ttgattgtcg caatctatct tgtcctcagc
     2281 ctatagttga aacaaaaaac gctcttgaaa aacttcaaga aaatgaaatt ttagaaattg
     2341 ttttaaattc tattatt
//
LOCUS       DARGEM010000165         2243 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.165, whole genome shotgun sequence.
ACCESSION   DARGEM010000165 DARGEM010000000
VERSION     DARGEM010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.165"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(324..677)
                     /gene="rplT"
                     /locus_tag="SFZ78_001706"
     CDS             complement(324..677)
                     /gene="rplT"
                     /locus_tag="SFZ78_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG8212535.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(771..962)
                     /gene="rpmI"
                     /locus_tag="SFZ78_001707"
     CDS             complement(771..962)
                     /gene="rpmI"
                     /locus_tag="SFZ78_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG8212536.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1121..>2243
                     /locus_tag="SFZ78_001708"
     CDS             1121..>2243
                     /locus_tag="SFZ78_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212537.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSIFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQA"
BASE COUNT          853 a          332 c          287 g          771 t
ORIGIN      
        1 attttcccat agttggtttt tctagttttg gagaaattta tggagcggga attgcaaaaa
       61 gtttagtggc aatatttttt atgaagttga aaattttaat gatttcaaac ctagatattt
      121 aaaaactttc atacaaaaat acagtgattt taaatactat tatcttaata taaaaggtca
      181 aaaactagaa atgacaaatg agattaataa aataatctta aatcaactca aatgttatga
      241 agatgttcta gctaaactaa attaatacta aaaaattaag aatttcaaga aatcaaaaat
      301 cttgaaattc ttacactaaa aaatcaaagt gctttttttg cggcctctgc aatttttgca
      361 aaagcagcag catcattcat agctaaatct gctagaattt ttctatcaag ttcaatgcct
      421 gcttttttaa gaccattgat aaatcttgaa taacttaaat cattgagtct gcaagcagca
      481 ttgatacgca caatccaaag acgacggaag tctctttttt tacggcgtct atcacgataa
      541 gcatagacta gacttctttc taattgttct tttgcctttc taaaatgttt gcggcgtcca
      601 ctataaaaac cacgcgctaa ttttaaaact tttttatgtc tgcggcgtct aacaacacct
      661 gtttttactc ttgccatttt tatttccttt cataaagtgg cgtccaaatt tggagcttgc
      721 ccttgaaatt ttatctcaga ggggagtttg aatgactttt agtcaaaaac ttaaattcct
      781 agcatttttt caacagcttt tacatttgtg ctatgcacat atttagctgt gcgaagatca
      841 cgcattcttt ttgcaggttt tttagtcaaa atatgacttc taaaagctga gcctcttttg
      901 attttatttt tacctacttt gaagcgttta actgcgcttt taacgctttt catctttggc
      961 atacgctttc cttatttaga taaattttta tttttcaaac tttaaaagaa aagataaata
     1021 ctatcaaatt ttttctaatt tttgactgaa tttaattttt aaaaaacttg gcacacattt
     1081 tgcttataaa aaaatcagca atattttgga aagatttaaa atgactataa attcggcaaa
     1141 tccatatcaa aatttaacct tatctaatcc tttgcagaat agctctgctc taaatttgat
     1201 taaagatagc aaagccttag atcaaaaagg aaatgaaaat agcttagaac aattgagtta
     1261 tatttttaat aatatcactt atgctagtga atttggattt agaatcaatg aagaaggttt
     1321 tttcgataaa gatttaaata aaattgcaaa tataccagaa tcttatgata tcaacattaa
     1381 aagcgttaga agcatagcga aagaactcgc aaaacaagat gaaaatttaa actacaataa
     1441 aattgatcta ccttatcttt taaacagcta tcatagttca ttaaaatcta taaattcaga
     1501 atttttacaa gatgataatg cttatttaag tcgcgatctt atttcaaaac tatcatcagg
     1561 tttttcaaca gataatggag aatttttagg ccaaatttca agaatttaca acaatcaaga
     1621 agaaattgat ttggcattaa gtaatatcac aaatttaaat actttaatgt tagataataa
     1681 aataactaat tttcactttg ataaagccat agaaaacact tcttctaatg aaattttaaa
     1741 accttattta actaaaaatg cagaagtatc aaaatctggt cttttaatga attttatcta
     1801 ccatgatata aaaactcaaa acgaaaaaga atttaacttt tttatgaaac ctgccacttt
     1861 agaactaagc tctcatcaaa atttacaaaa aattctcaag ggtgaaacag atatagaaga
     1921 ttacatcaaa aaagaaaatg aaaaaaagat gagttttgat ctttatcttt atgtgaatgg
     1981 cgtagataaa aaaacaagta ctcaagataa actatctata ttttttcaac aatatattaa
     2041 ctaccaaaaa gatatggatt taagagaatt tgcaaattca agttcaatat ttcaaattta
     2101 tatcgatcaa aatcgcaatg attttgatgc tcttaaaaaa caatatcaaa accaaagtca
     2161 agatacgcaa agattagaag aagcaaatca actacgttct agctctatag aaaatttttt
     2221 agatcgtcgt caaaaacaag caa
//
LOCUS       DARGEM010000166         2184 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.166, whole genome shotgun sequence.
ACCESSION   DARGEM010000166 DARGEM010000000
VERSION     DARGEM010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.166"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..390
                     /locus_tag="SFZ78_001709"
     CDS             <1..390
                     /locus_tag="SFZ78_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212538.1"
                     /translation="YKLEHFQRKEEYKTQHPVIKQHPILAYNDAIQILYEYANGIYNT
                     TQDEKGKFIEDRQKARRLMENLEAIGQHNLEVMYKGINEEYVKNKRKNEYDEEESDDT
                     NKSQDYSNKFIGRLATTIIMEDGLYIG"
     gene            401..1693
                     /locus_tag="SFZ78_001710"
     CDS             401..1693
                     /locus_tag="SFZ78_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212539.1"
                     /translation="MSETYEIYTSNGLILEVDKNTNQIIFDKREDGREVGKYTQEYSK
                     ALFEAHNIKQNSPYKDYKPQYLDPNLYTGQSSTLLEFKDWQSIYLKDPIKGAIAPWTK
                     AEKAYYKSLKTKRERYKYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYRIVD
                     DNKHNLRSSLFHNEWGMAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGSSIL
                     DKPHLLGAIYGYADIAVGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEIMGV
                     DWVIDYNKYRIARDEFGSMYKALRSDIVEGKIKDPRDIDSTYESRREFDHHRGGYYNG
                     MVNAYGYDIPNDRSEESAQLRIDSMILTAKLAALTPPQGYPNAPYYFTPENLEWYYKR
                     HKLDKLLDPRIPAIYRYNFPRELRAKILAYAKEHNIKE"
     gene            1716..>2184
                     /locus_tag="SFZ78_001711"
     CDS             1716..>2184
                     /locus_tag="SFZ78_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212540.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSNTHYKNPLLQYA
                     ITQKQEQENIVYALKNNENLNTSFANLNALKLALEEKNFYLNFIDLNSKESLLS"
BASE COUNT          894 a          267 c          365 g          658 t
ORIGIN      
        1 tataagctag agcattttca aagaaaagaa gagtataaaa cacaacaccc agtgataaaa
       61 caacacccta tcttagctta taatgatgct atacaaattt tatatgaata tgcaaatggg
      121 atttataata ccactcaaga tgaaaagggt aagttcatag aagataggca aaaggcaaga
      181 agattgatgg aaaatttaga agccatagga caacataatt tggaagtgat gtataagggg
      241 ataaatgaag aatatgtaaa aaacaaaaga aaaaatgaat atgatgagga agaaagtgat
      301 gatactaata aatcccaaga ttattctaat aagtttatag gcagactagc cactactata
      361 atcatggaag atggtttgta tataggatga aaggataaaa atgagtgaaa cttacgagat
      421 ttatacttct aatggactta tattagaagt tgataaaaat acgaatcaaa ttatatttga
      481 taaaagagaa gatgggcgtg aagtaggcaa atacacccaa gaatattcca aagctttgtt
      541 tgaagcacac aatatcaaac aaaactcccc ctacaaagac tataaacccc aatacctaga
      601 tcctaatctt tatacagggc aaagttctac tttacttgaa tttaaagatt ggcaaagtat
      661 ttatttaaaa gatcctataa aaggagctat agctccttgg actaaagcag aaaaagctta
      721 ttataaatct ttaaaaacta aaagagaaag atataaatat ttagttataa gaagtggtat
      781 aagaagtgtt gttatagata taccttatga agctatagga gctgtagatg aaaaaggaaa
      841 tgtagatcct aaatatgaaa aattatatag aatagtagat gataataaac ataatctaag
      901 atcaagttta tttcataatg aatggggtat ggcagcagga atattaggtg attataaata
      961 cctagctaat gatatgtttc aaaatggttt taatgcaaga tttatacaag ctactatact
     1021 ttatatacaa ttaagtggag gaagtagtat attagataaa cctcatttat taggtgctat
     1081 ttatggttat gcagatattg ctgtaggaag tggtttagta ggagtgcata aaaacccttt
     1141 aagagaacaa gagattaaaa ccttagctaa gactttaaaa cctgatgaat ttggtatgct
     1201 tccttttata gatgagatta tgggagtaga ttgggtgatt gattataata aatatagaat
     1261 tgctcgcgat gaatttggaa gtatgtataa agccttaaga agtgatatag ttgagggcaa
     1321 aataaaagat ccaagggata tagattctac ttatgaaagc agaagagaat ttgatcatca
     1381 taggggaggg tattataatg gcatggtaaa tgcttatggt tatgatattc caaatgatcg
     1441 gagtgaagaa agtgcacaat taagaataga ttctatgata ttaactgcca aattagcagc
     1501 cctaactcct cctcaaggct atcctaatgc cccttattat tttacccctg aaaatctaga
     1561 atggtattat aaaagacata agcttgataa acttcttgat ccaagaattc ctgctattta
     1621 tagatataat ttcccaaggg aacttcgagc taaaatacta gcttatgcta aagagcataa
     1681 tataaaagag taaaccacaa aagaaaggaa aaacaatgca aaaaatactt caaatcgatt
     1741 tagaaaaaag aaaagcttta gagaatttca aaaatctagc tttattagga ttaggtggaa
     1801 caatgctttt aaatttaaaa gaacaagctt tggattttag tcaagaatta acttatataa
     1861 atacttatga taagtattta aatttaaagc ttgattcttt ttatatccct tctacacttt
     1921 tatctttgct tcaattaact aagaaaagca aagaagcttt ttatatcaat gttttaatca
     1981 atagcaatac acattataaa aatcctttat tacaatatgc tattacccaa aaacaagaac
     2041 aagaaaatat cgtttatgct ttaaaaaata atgaaaatct taatacttct tttgcaaatc
     2101 ttaatgcttt aaaattagcc ttagaagaaa agaattttta tcttaatttt atagacttaa
     2161 acagcaaaga aagtctttta agtt
//
LOCUS       DARGEM010000167         2159 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.167, whole genome shotgun sequence.
ACCESSION   DARGEM010000167 DARGEM010000000
VERSION     DARGEM010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.167"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..754
                     /locus_tag="SFZ78_001712"
     CDS             <1..754
                     /locus_tag="SFZ78_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
                     /protein_id="HEG8212541.1"
                     /translation="LTEALAKNNNQNSWEHFDYKNTKEAPKIQEENVDFKSTFDSLLS
                     KTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLLFQKELFVAQDNYNYSGGL
                     INRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIKAYSNYYIPNEAEKKLQLG
                     MSFVIPTYTAFVFDISKDNDKTNYQVSYSPYSVFSLNLLRRDYSTRETVDDTVVQVGF
                     SFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(751..2127)
                     /locus_tag="SFZ78_001713"
     CDS             complement(751..2127)
                     /locus_tag="SFZ78_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8212542.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT          773 a          340 c          331 g          715 t
ORIGIN      
        1 acttacagag gctttagcaa aaaataataa tcaaaattct tgggagcact ttgattataa
       61 aaataccaaa gaagctccaa aaattcaaga agagaatgtg gattttaaaa gcacttttga
      121 tagcttactt tcaaaaactt tagaaaataa taatggtata gataaaacag atgggaattt
      181 agattttcaa aatgaaaacg cgcaggttaa aaatttaagt tctctttatg agggggagaa
      241 taattctttg ctttttcaaa aagaactttt tgtggctcaa gataattata attactcagg
      301 gggtttaatc aatcgttatg aaaaagatga ttttttattt ggagttaatg gttttattga
      361 taaacaaaaa gaacaaaaag atactaaaag ctttggtaca gagtttggtt atagtaaatt
      421 tataaaggct tatagtaatt attatatacc caatgaagca gaaaaaaaat tacagcttgg
      481 aatgagtttt gtaattccaa cttataccgc ttttgttttt gatataagta aggataatga
      541 taaaactaat tatcaagtat cttactctcc ttatagtgta tttagtttaa atttattgcg
      601 tcgtgattat agtacaagag agactgttga tgatactgtt gttcaagttg gatttagttt
      661 taatttcaat gaaagttttt taaagcaatt tagaaaaaaa gataatactt tagaggaggt
      721 taatcgatat gatttcctcc aaagaactca ttagttcatt ccagcattat gaaatttttc
      781 tggattgtcc atagcgtagc ggaatttttc ccaatcaatt tgtttatccc agatagcaac
      841 gattaaagct gctactgaat ttccgcaaag atttccaacc gctctcattt cagacataaa
      901 tttatcaaca cctaaaagaa cacctatagc agctactggt agaacttgtg ctaaggttgc
      961 atttgcttct gaaatttcca tatttcctag agccgcaagc gtacttccaa gcactataaa
     1021 acctgatcca gttacaccta ctgcaccttt tgaggctatc attaatacta ttaaaatact
     1081 gatttcgtgt gctaaactta aatttacatt gaaagcttgt gctagaaaga ttaagctcat
     1141 agctagataa atatttgtac aatcaagatt aaaactatat cccgttggta aaacaagtcc
     1201 gactgttgct ttagaaagtc ctgctttttc tagttttctc attaaaggag caagtgcaga
     1261 ctcgcttgaa ctggttgcaa aaacgatcaa tacttctctt gagataaatc tcataaattt
     1321 gaagatattt acttttgcaa aataacaaat cagacctaag attccaaata taaaaacaag
     1381 acatgaaatc agcattacta aaagtaaata tgctaagttg atcaaagagc caattccgta
     1441 ttgagctatg agtacagcca ttgctgaaaa ggcggcaata ggactaaaat acataatgat
     1501 ttgtagaatt ttaaaaacaa aattttgtac cacttcaaaa actctttgaa ttgcctgttt
     1561 gtcttctatt ctcattaaag aaataatcaa agcagtaatt atggcaataa ctaaaacttg
     1621 tatggttttt ccttctgtaa aaggtgtgat aatatcagta ggcatagcat cttttaaaat
     1681 atgcataatc tcagagctcg cacttacttc tgtggtttga gaaatgtatt tttgaacgct
     1741 ttttgtatca agttgacttg gatcaagatt cattccatgg cctggttgca taacatttgc
     1801 cataaaaata cctatagcaa gtgctaaagt acttacaact tcaaagtaaa taaccgcttt
     1861 agcaccaatg ctacctactt tttttaaact ttcaagacta atgatgccca aaaccaaagt
     1921 aacaaaaata atagggccta taagaacctt taaagcacct ataaaataat caactcctgg
     1981 tttgctagca atggctaatt ctttatctgt atagccaagt acaatacctg taataatgcc
     2041 tataatcacc caaaatccaa gactttttat aatacgttta tataaaggcg gttttctttc
     2101 agctaaagtt tgacttaaag tttccaagtt tattcactcc ttttgatctt tgtaaaata
//
LOCUS       DARGEM010000168         2158 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.168, whole genome shotgun sequence.
ACCESSION   DARGEM010000168 DARGEM010000000
VERSION     DARGEM010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.168"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..267
                     /locus_tag="SFZ78_001714"
     CDS             <1..267
                     /locus_tag="SFZ78_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8212543.1"
                     /translation="LLIELGANVNFATPTTPLDDAKGSRNKKLLKDAGAMTSEQIRKK
                     FNLPAYDSSHCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
     gene            260..2059
                     /locus_tag="SFZ78_001715"
     CDS             260..2059
                     /locus_tag="SFZ78_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212544.1"
                     /translation="MNEGIEIDFTKVNFHIKEFQKVYILENCKLCFYSPFHLQTQNGK
                     EVKKIEKKGKSKIYLIDEDGKTVDIDKTSEQNKIKAREETRKKEEKSKNVLFSNDEKG
                     NDAINAYFGEKNIDTLNKAYEEREAKPLSRNTENFKDYDVFYDVYTSKDNKDNSVNKK
                     LGCGDGFEVNNGIAEVGAEFFDKCFEKGIYVLIPRLVSLDKNEELHFDPVPLEDKGFV
                     VTDFRKGKKGEKNIDLSFQRNIAKIKNPNLTLQSPKEFLQALNENKEFTEDDKIQQAQ
                     AIKKACGKKADEITKILLKDDKSLKDVITDKDGLKEKIKELQRKPETNEKLNLLGRLE
                     FLQRNQDKAKDYKKTIKDLQNPQQASNDKQNDKTKSRTKNKQKQTTTPNQEEQKNKNI
                     NSKDIGDAGEYAASMLFTKRSTRYLSNRRKIDANFNTHSFNHTIPDFLVTLNDYPTLV
                     EVKNVQDQALTEQISFELKLAREYELDYLFICNHYTKLVENIAGGNVTVKNEKEIKLK
                     EIQNHDDKKKKGYETNTKNLTKFDERYDWGSRRGFIYHRHAHRSIKTIFKEMYLHHIK
                     GAAPNKIIIKRLNLNNSANIEEELNKNKQIQKN"
BASE COUNT         1008 a          262 c          339 g          549 t
ORIGIN      
        1 cttttaattg aacttggagc taatgtgaat tttgctaccc caaccacccc tttagatgat
       61 gcaaaaggat ctagaaataa aaagctttta aaagatgcag gagcaatgac ttcagaacaa
      121 atcagaaaga aatttaattt accagcatat gattcttctc attgcgaaat tgatggaaaa
      181 actgatatgg atttattagg taaatatcat gatgaatatt ccaaactttt aaacgatgct
      241 ataaaaaagg ctaaagaaag tgaatgaggg aatagaaatt gactttacta aagtcaattt
      301 tcatatcaaa gaattccaaa aagtttatat attagaaaat tgtaaattat gtttttacag
      361 tccttttcat ttgcaaacac aaaatggaaa agaagtgaaa aaaatagaaa aaaaaggcaa
      421 atctaaaatt tatcttatag atgaggatgg aaaaactgta gatattgata aaacttcaga
      481 gcaaaacaaa ataaaagcaa gagaagaaac aagaaaaaaa gaagaaaaaa gtaaaaatgt
      541 attatttagc aatgatgaaa agggaaatga tgcaatcaat gcttattttg gtgagaagaa
      601 tattgatacg ctaaataaag cctatgaaga aagagaagcc aagcctttat caagaaatac
      661 agaaaatttt aaagactatg atgtatttta tgatgtttat acaagtaaag ataacaaaga
      721 taacagtgta aataaaaaac taggatgcgg tgatggcttt gaagtaaata atggcatagc
      781 tgaagttgga gcagaatttt ttgataaatg ctttgaaaaa ggaatttatg ttttaatacc
      841 aagattagta tctttagata aaaacgaaga attacacttt gatcctgtgc ctttagaaga
      901 taagggcttt gtggttactg attttagaaa aggaaaaaag ggagaaaaaa atatagattt
      961 aagctttcaa agaaatatag ctaaaataaa aaatcctaat ttaactttac aaagccctaa
     1021 agaattccta caagccttaa atgaaaataa agaatttaca gaagatgata aaatacaaca
     1081 agcacaagct attaaaaaag cttgtggaaa aaaagcagat gaaataacca aaatattgct
     1141 taaagatgat aaaagtttaa aagatgttat tacagataaa gatggactaa aagaaaaaat
     1201 caaagaattg caaagaaaac ccgaaacaaa tgaaaaacta aacctactgg gtagactgga
     1261 atttttacaa agaaatcaag ataaagctaa agattataaa aaaacaatca aagatcttca
     1321 aaaccctcaa caagctagca atgataagca aaacgataag acaaagagta gaacaaaaaa
     1381 caaacaaaaa caaaccacca ccccaaacca agaagaacaa aaaaataaaa atatcaattc
     1441 aaaagatata ggagatgcag gtgaatatgc tgcttctatg ctttttacta aaagatcaac
     1501 taggtattta tctaatagaa gaaaaataga tgctaatttt aatacccata gttttaatca
     1561 taccatacct gattttttag taacgctaaa tgattaccct accttagtag aggttaaaaa
     1621 tgtccaagat caagctttaa cagaacaaat aagctttgag ttaaaactgg ctagagaata
     1681 tgagcttgat tatttattta tatgcaatca ctatactaaa ttggtagaga atatagcagg
     1741 aggcaatgta actgtaaaaa atgaaaaaga aatcaaatta aaagaaatcc aaaaccatga
     1801 tgacaaaaaa aagaaaggct atgaaacaaa taccaaaaat cttacaaaat ttgatgagcg
     1861 gtatgattgg ggatcaagaa gaggctttat ctaccacaga catgctcaca gaagcataaa
     1921 aacaatattt aaagaaatgt atctacatca cataaaagga gcagcaccta ataaaattat
     1981 cataaaaaga ttaaatttaa ataattctgc taatatagaa gaggaattaa acaaaaacaa
     2041 acaaatacaa aaaaattaaa ggaaaaacaa tgaaaacctt agaagatatc aaagctatga
     2101 gctatcaaga aaaagatgaa ttagaagatt tagttcttga aattatagat gataatga
//
LOCUS       DARGEM010000169         2151 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.169, whole genome shotgun sequence.
ACCESSION   DARGEM010000169 DARGEM010000000
VERSION     DARGEM010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.169"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..2012
                     /locus_tag="SFZ78_001716"
     CDS             <1..2012
                     /locus_tag="SFZ78_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEG8212545.1"
                     /translation="DIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELREN
                     LIKKEKLEQEYKAYQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTE
                     TEESDKINENKNLDKADNIFGFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQN
                     TETKIDNEKTNDQEVKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANP
                     KEHKQEINESEIDKKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRIL
                     NLQDDLTMALMAKSIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLT
                     IALGKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMID
                     PKMLEFSIYNDIPHLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEK
                     MKELGGEELPFIVVIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVD
                     VVTGLIKANLPSRISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAP
                     FASEFEIEKIVDFLKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILE
                     DGKTSISYLQRRLKIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
BASE COUNT          876 a          293 c          372 g          610 t
ORIGIN      
        1 aagatataaa gcaaatagat acaaataaaa atttagatga gccaagttat aaacgtaaaa
       61 atattgaaat tccagtttct aatcaagaag ttaaaccaaa aatttttaca aaagagcttg
      121 aacttagaga gaatttgata aaaaaagaaa aactagaaca agaatacaaa gcctatcaaa
      181 atgaaatttt agaaaataaa gtaaaacaag aaattaaaaa attagaagaa tatgatgcga
      241 taaattcaag cgatattata gaagggaata aatatagttt taatagccca aaaacaatta
      301 aaacagaaac agaagaatca gacaaaataa atgaaaataa aaatctagat aaagcagaca
      361 atatctttgg atttgctccc attgtagaag agttaaatca tccttatata gaacctactc
      421 ctataaaaaa tataaatgaa atagttatag aagaaaaaaa tacactcgat tttatccaaa
      481 atacagaaac taaaatcgat aatgaaaaaa caaatgatca agaagttaaa cttcaaaaag
      541 cagttttagc caaagaaatt gctattaacc aagctttatt gcgtgaaata gagcagggcg
      601 aagtagaaaa accaaaagat ttcaccttgc cgccattaga ttttttagct aatccaaaag
      661 aacacaaaca agaaatcaat gaaagtgaaa tagataaaaa aatttataat cttcttgaaa
      721 aattgcgtcg ttttaaaata ggcggcgatg ttataagcac ttatgttggt cctgtggtaa
      781 ctacttttga atttcgtcct agtgcagatg tgaaagtaag tcgtatttta aatttgcaag
      841 atgatttaac tatggcttta atggcaaaat caatccgtat tcaagctcca ataccaggaa
      901 aagatgttgt aggtatagaa gttccaaatg atgaaattca aaccatttat ttaagagaaa
      961 ttttacaaag tgaagttttt aaaaacgcta aaagtccttt aaccatagct ttaggtaaag
     1021 atatagtagg caatgctttt gtaaccgatc ttaaaaaact tccgcattta ctcatcgcag
     1081 gaacgacagg tagtggtaaa agtgtgggga taaattctat gcttttaagt cttttatatc
     1141 gcaactctcc aaaaaccttg cgtttgatga tgatagatcc taagatgctt gaatttagca
     1201 tttataatga cattcctcat cttttaactc ctgttatcac agatccaaaa aaagcagtca
     1261 atgcgctttc aaatatggta gctgaaatgg aaagacgcta tcgcttaatg gctgatgcaa
     1321 aaaccaaaaa tatagaaaat tacaatgaaa aaatgaaaga attaggcgga gaagaacttc
     1381 cttttattgt agtaattatc gatgaacttg ctgatttgat gatgactgcg ggtaaagatg
     1441 tagaatttta tataggaaga cttgcgcaaa tggcaagagc aagtggaatc cacttgattg
     1501 tagctacaca acgaccttct gttgatgttg taacaggact aattaaagcg aatttaccaa
     1561 gtagaatttc ttataaagta gggcaaaaaa ttgactctaa agttatttta gatgctatgg
     1621 gtgctgaaag tttacttgga agaggggatt gtttatttac tcctcctgga acaagctcta
     1681 tagtgcgttt gcatgcgcct tttgcaagcg aatttgaaat agaaaaaatc gtggattttc
     1741 taaaggatca acaaagcgta gaatatgatg aaagcttttt aaaggatcaa caaagcgtag
     1801 gtgttacaac aaatgaaagc tttgatgggg aagtagatga gctttatgaa gaagctaaaa
     1861 gagtaatctt agaagatgga aaaacaagca tttcttattt acaacgccgt ttaaaaatcg
     1921 gctataaccg ctctgcaaat attattgaac aacttacgca aaacgggatt ttaagcgaac
     1981 ctgatgccaa aggacaaagg gaaatcttgt aagatttttc ttgtgttttt gatatataaa
     2041 actgattaca aaagaagaaa tttaaaagac aaaagccccg taaaaagggc ttaaaaatta
     2101 tttatctcta agattaaatt cagtaattaa tttactataa gaattataat c
//
LOCUS       DARGEM010000170         2090 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.170, whole genome shotgun sequence.
ACCESSION   DARGEM010000170 DARGEM010000000
VERSION     DARGEM010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.170"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..277
                     /gene="nusB"
                     /locus_tag="SFZ78_001717"
     CDS             <1..277
                     /gene="nusB"
                     /locus_tag="SFZ78_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG8212546.1"
                     /translation="KNFTLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRL
                     GAYELLFTDTPSAIVINEAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            274..1113
                     /gene="pyrF"
                     /locus_tag="SFZ78_001718"
     CDS             274..1113
                     /gene="pyrF"
                     /locus_tag="SFZ78_001718"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG8212547.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            1110..1847
                     /locus_tag="SFZ78_001719"
     CDS             1110..1847
                     /locus_tag="SFZ78_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212548.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIKFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAIDYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNLSAEK"
BASE COUNT          808 a          267 c          301 g          714 t
ORIGIN      
        1 aaaaaatttt actttaaatt tatataatgg aattttagat aatttaaaca atattgatga
       61 aaccttaaat tcatttctaa atgataatca aattacagct ttaggacatg tagaaagagc
      121 tatactaaga cttggagctt atgagttact ttttaccgat actcctagcg ccattgtcat
      181 caatgaggct atagaacttg ctaaagaact tgctaatgac aattctccaa aatttataaa
      241 tggagtttta gatgccttaa taaaggctaa aaaatgaagc tttgtgtcgc acttgatctt
      301 tctacaaaag aagaatgctt acaacttgcc aaagaattaa aaaatttaga catatggtta
      361 aaagtaggtt taagagcata tttaagagat ggttttaaat tcatagaaga acttaaaaaa
      421 gttgatgatt ttaaaatatt tcttgatctt aaaattcatg atattcccaa cactatggca
      481 gatgcttgcg aagaagtatc aaaacttggt gttgatatga tcaatatcca cgcaagtgct
      541 ggaaaaatag ccatacaaga agttatgaca cggcttagca aattttcaaa aagaccttta
      601 gttttagcag tttctgctct tacgagtttt gatgaagaaa atttctttag tatttataga
      661 caaaaaattg aagaagctgt aattaatttt tcaaaaatat cctatgaaaa tggacttgat
      721 ggtatggtat gctctgtttt tgaaagcaaa aaaattaaag agcacacaag ttcaaatttc
      781 ttaaccctta ctcctggaat tcgtcctttt ggagaaacaa gtgatgatca aaaacgtgtt
      841 gctaatcttg caatggctag agaaaatttg agtgattata tcgttgtggg aaggcctata
      901 tataaaaatg aaaatcctag ggctgtatgt gaaaaaattt taaacaaaat acacagaaaa
      961 aatataagcg aaaacgatat agagcaaaat tatgaagtaa ttcagcaaaa agaatgggat
     1021 atgtgtaatc actttgaaga atggattaaa actcagcctg ataaagaaca tgctttaaaa
     1081 gaattttatg ctaagtgtgg gataaaatat tgaattatca acaattagaa tgcgattact
     1141 ttaatcttta caatcagttt cttagcgtgg attttcaaat ttcattattt gaaaaagatc
     1201 ataaaggttt aattaaagat tttatatttt tttattatca aattttaaaa caaaaagact
     1261 tgagctactt gcttgaggta agaaataaaa tttccctgaa agtttataat tatatgcaag
     1321 agcactccac ttctccaaaa gatttaagtc ttatttgtct aagagaaaat aaacatatta
     1381 aattttttca aatattttac aaggctctcg cttattttgt agcctttaga aaaaaacttg
     1441 atggagaaca aaaaattaaa aatttgattt caaatatcaa tgactgtttt ggctatcatt
     1501 tcttgaattc tgactttaac aatcttcaaa attttcaaaa aagcgatttg ttcaccttac
     1561 ctgaaaaaca tcttaaatat tttcacttcg ccatgattca tctttgtttc atggttttaa
     1621 atcctttaaa ttttaaagac tctaatcggc atcttgataa agcgattgat tatcttgtcg
     1681 atggaacttt tgaaatttat gagctcatct ttaaagaata ttttttattg ttttcaaaag
     1741 ataaagagct caaggatgaa cttagaaaat taaaaaaatt agaatttaaa attctaatgc
     1801 aagaaacttc aaaaattaaa ctacttaatc tgtcggcgga aaaataaaat ttccatttgg
     1861 aaaaataaaa cttccataaa agtggaaatt ttatttttct acaaacctta aacttaaaat
     1921 ataactttat taaaataaaa ctaacaaaaa attcgtttat gatgttcatc ttctttaaca
     1981 atggttttca tatccaaata atgctttact atatattttg gaatattaaa gtcgtaatca
     2041 gagtgtggct ttaaatcaaa acgattaaaa ggtttgtaat ttttataata
//
LOCUS       DARGEM010000171         2027 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.171, whole genome shotgun sequence.
ACCESSION   DARGEM010000171 DARGEM010000000
VERSION     DARGEM010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.171"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..208
                     /locus_tag="SFZ78_001720"
     CDS             <1..208
                     /locus_tag="SFZ78_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEG8212549.1"
                     /translation="NGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTA
                     KLGWAKILGNTQKKYTIVYMKLCE"
     gene            359..1774
                     /locus_tag="SFZ78_001721"
                     /pseudo
     CDS             359..1774
                     /locus_tag="SFZ78_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          801 a          288 c          235 g          703 t
ORIGIN      
        1 caatggaacc aaacacgatg atttaaaaaa tagcataatg tttttaacaa ataatgaatt
       61 ttgtgttgat ttatatctta aaatcaacta ttcttcagaa atgaagtttg tgttaggaga
      121 agaaaatact gccaaacttg gttgggcaaa aattttaggt aatacgcaaa aaaaatatac
      181 aatagtatat atgaaactat gtgaataagc tgacacaaaa atatgtttaa aaaaatcaca
      241 acctctcttc acccataaac cataccctaa aataaacttt attttaccca ctttatgcta
      301 aaataaatca cataagctta taggctatta atcatcaaca aacccaaaag gatcatcaat
      361 gtcccttaat tcttacatga gtcttaatat atcaaattct acttcaaatc ccctaccctt
      421 taaaatcact aaagccctca tcaaagaaag tcttgaagag cttttttcta tagaatgtga
      481 aggctttttt gaaagtttag aacaagattt attttcttta aatactttaa ccaatgcttc
      541 atctcatcca agcaccccta caacttttaa ttttcatcct aatgttttaa tcgatcaaga
      601 agctatttta agtatccata atccttatga gaataatacc ttaaactttg ataacaatga
      661 agtaaaaaac tataagggaa ttatcactta tataaaatat ctaggtatta atcatgaaag
      721 tgctttaaat attaatgata gcacttcaaa tactaagcaa atacaataca agcatttttt
      781 ttcttttaag cttcaatcag tcttgataag actttcttta aataaagcca atcgtattta
      841 tactcatact aatattatag aagtgattaa acaaaccctt ggtttttatc aagatatctt
      901 acataaagaa attgattatt ctaatataca ttttaattat gaagaacaag aactcatctc
      961 tcaatacaat gaaagtgatt tagactttat tacaagatta agccataata atggaatctt
     1021 tttttatgaa gatgagaaca ctatttattt ttgtgatgtg tataaaaatg taaaaaataa
     1081 aaaaattgag tataatccta atattaataa tattttaaat caagcttgta tttcttctat
     1141 ttataaagag caaagcttaa gaactaattc ttttacacat tctagtatta atgccaatac
     1201 tcctttaaat cttttatctt tacactctag taaagttcct tatgaacaag aacttaataa
     1261 caaagcttgt tataatgaac atttttatga gagtgaatat tcttttacaa aaagcattga
     1321 tttaaagact aagccttctc ttaaagaaaa aagagcctta gtattaaatg aaagcttact
     1381 agcaaaaagt aatatttatc atcttagctt aggagatttt atcactttaa attataagga
     1441 gtttaatcat caagaagaaa taaaaaatca agatgaagaa aaacaagata aagcttcttt
     1501 gcttaaagac tttattatta tcgctaatac tcaaatctta attgatgatg ccatcttagc
     1561 taattctatt aatactaatg atcatttaaa tttaaaagat ttaaatttaa ataaatctta
     1621 ttctaatact ttaactttac taaaaaagaa tattatcttt actccaagtt ttaaagctaa
     1681 acctaaagct cctaatagca ctcaaggtat tgttatagga gagagtaagg atatagaaag
     1741 tgagagaaat actatttata ctgatgagca tggaagggtt aaggtaagga ttaatcttta
     1801 tgccaatcaa gaagaattag ataatgatac ttttattgca aatgatatag atacaaattc
     1861 ttctaattta tcaagcaata cttataaatc ttatcatcac actccttttt taagagtagc
     1921 ttctcatata gcaagtaatc attcaggttt ttttcatact ccaagaatag gagatgaagt
     1981 gattatttct tttttagatg atgatataga taaaccttat gtaagtg
//
LOCUS       DARGEM010000172         1962 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.172, whole genome shotgun sequence.
ACCESSION   DARGEM010000172 DARGEM010000000
VERSION     DARGEM010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.172"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..243
                     /locus_tag="SFZ78_001722"
     CDS             <1..243
                     /locus_tag="SFZ78_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212550.1"
                     /translation="IQKKPMDKIDAALESKEFKVIDEQIKEKLEQAFNQLLNDSNSYE
                     ELFENLQKEFSDISINILEEFMFQALANSSILGYGD"
     gene            246..1484
                     /locus_tag="SFZ78_001723"
     CDS             246..1484
                     /locus_tag="SFZ78_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEG8212551.1"
                     /translation="MFFGKPNKAIEYLQSKKPQTSFDYDEIMHETHNKVFTIAKLNDL
                     NLLKDIQNSLIEALKNGDKIETWKKQITPKLKAKGWFGDKVEVVNPKTGEVKNIKIGT
                     SRLKKVFETNMRIAKAQAVWENILQSNKEYVRWISLLHGNRRKEHLALHGMILRRDDP
                     FWINNRPPCGYGCKCSIQGVSESELKLYGWKLSKQTPADLADKNFNYNKNLGVEKLEK
                     LYKEKISQISQNFIKLEALSLATKTKENAQSFQREKELYIWQKSLDDMVDEVIIKDNQ
                     KYPINFIQVGKIDKTTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSAD
                     EIKQIVKVLDEAKEVYWDTKEESLVYFFDDLKNSKKVNKIIIRPDYKLKKFGKTNALI
                     TLGKVDKDTKESSKEYEKIK"
     gene            1616..>1962
                     /locus_tag="SFZ78_001724"
     CDS             1616..>1962
                     /locus_tag="SFZ78_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8212552.1"
                     /translation="MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKE
                     SEKIKIQGKTLPLKGDRNTYLDKLENMAKEQKSYILTGANGKYYGKFVILALNENRSA
                     FVDGSGFVAQSFG"
BASE COUNT          823 a          252 c          345 g          542 t
ORIGIN      
        1 atacaaaaaa agcctatgga taaaattgat gcagcacttg aaagtaaaga gtttaaagtc
       61 attgatgagc aaattaaaga aaagctagaa caagccttta atcagctttt aaacgattct
      121 aattcttatg aagagctttt tgaaaacttg caaaaagagt ttagcgatat ttctatcaat
      181 attttagaag agtttatgtt tcaagcttta gctaattcaa gtattttagg ctatggggat
      241 taaaaatgtt ttttggtaag ccaaataagg caattgaata tttacaaagc aaaaaacccc
      301 aaactagctt tgattatgat gaaataatgc atgaaacaca taataaagtc tttaccattg
      361 caaagctaaa tgatttaaat cttttaaaag atattcaaaa ctctttaata gaggctttaa
      421 aaaatgggga taaaattgaa acttggaaaa agcaaattac cccaaaatta aaagctaaag
      481 gatggtttgg ggacaaagta gaggttgtaa accctaaaac aggagaagtt aaaaatatca
      541 aaataggcac ttcaagacta aaaaaagtct ttgaaacaaa tatgagaata gcaaaagccc
      601 aagcggtgtg ggaaaacatt ttgcaaagca ataaagaata tgtgcgttgg ataagcttac
      661 ttcatggcaa tcgaagaaaa gagcatttag ccttacatgg gatgatttta agaagagatg
      721 atcctttttg gattaacaac cgcccacctt gtggttatgg gtgcaaatgc tctattcaag
      781 gtgtaagtga aagtgaatta aagctttatg gctggaagct ttcaaagcaa acaccagctg
      841 atttggcgga taaaaatttt aactacaata aaaacttagg cgtagaaaag cttgaaaaac
      901 tttataaaga aaagataagc caaataagcc aaaacttcat aaagttagaa gctttaagct
      961 tagcaaccaa gacaaaagag aatgcacaaa gttttcaaag agaaaaagaa ctctatattt
     1021 ggcaaaaaag cttagatgat atggtggatg aagtcatcat taaagataat caaaaatatc
     1081 ctatcaattt catacaagta ggcaaaatag ataaaacaac taaagaattt ttagaaaagc
     1141 ttaataaaaa agacttagaa gatttatatt ttacgctaag taaaaacaat cttttacacg
     1201 caagccctaa aagaaaggca agttataatc aggctttaag cgcagatgaa atcaagcaaa
     1261 ttgttaaagt cttagatgaa gcaaaagagg tttattggga tacaaaggaa gaaagcttgg
     1321 tttatttctt tgatgattta aaaaatagta aaaaagtaaa taaaatcatt ataagacctg
     1381 attataaatt aaagaaattt ggaaaaacaa acgcacttat tacacttggt aaagtagata
     1441 aagatacaaa agaaagttct aaagagtatg aaaaaattaa gtgaagcggg tgggactcga
     1501 acccacaaca ccaccaaagc tctaaacttc tcgttgtgct taccactcat aaagagttca
     1561 catcttcgct tcgttaataa aaattttacc attacgcaac taaaaaggag tttaaatggt
     1621 tttagcttta ggagaatttg agtttaaagc tttaaatttt gataatttag aaagaagctt
     1681 agaatacaac atacaaagtc aaaataggct taacaatcac aatgctttat ttgcaagttc
     1741 taaagaaagt gaaaagatta aaatacaagg caaaacctta cctttaaaag gagatagaaa
     1801 tacttattta gataaacttg agaatatggc aaaagaacaa aaatcttata tcttaacagg
     1861 ggctaatgga aagtattatg gtaagtttgt gattttagct ttaaatgaaa atagaagtgc
     1921 atttgtagat ggaagtggct ttgtagcaca aagctttggc at
//
LOCUS       DARGEM010000173         1950 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.173, whole genome shotgun sequence.
ACCESSION   DARGEM010000173 DARGEM010000000
VERSION     DARGEM010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.173"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..358
                     /gene="exbB"
                     /locus_tag="SFZ78_001725"
     CDS             <1..358
                     /gene="exbB"
                     /locus_tag="SFZ78_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG8212553.1"
                     /translation="FWCVVERMLFFRKINFKNYENQEQFDDAISENLTTIYIIYSNAP
                     YIGLLGTVIGIMVTFYEMGLAGNIDVKSIIVGLSLALKATALGLLVAIPALMAYNALL
                     RKVSLLSNAYKANKNA"
     gene            351..740
                     /gene="exbD"
                     /locus_tag="SFZ78_001726"
     CDS             351..740
                     /gene="exbD"
                     /locus_tag="SFZ78_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG8212554.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            737..1419
                     /locus_tag="SFZ78_001727"
                     /pseudo
     CDS             737..1419
                     /locus_tag="SFZ78_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(1432..>1950)
                     /locus_tag="SFZ78_001728"
     CDS             complement(1432..>1950)
                     /locus_tag="SFZ78_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3135 domain-containing protein"
                     /protein_id="HEG8212555.1"
                     /translation="NKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNFF
                     IDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNIK
                     EKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNKI
                     ENQEAQIVDKRV"
BASE COUNT          715 a          320 c          233 g          682 t
ORIGIN      
        1 tttttggtgt gttgtagaaa gaatgctatt ttttagaaaa attaacttta aaaattatga
       61 gaatcaagag caatttgatg atgcgattag tgaaaattta accactatat atatcatcta
      121 ttccaatgcc ccttatatag gacttttagg cactgtaata ggcatcatgg ttacatttta
      181 cgaaatgggc ttggcgggca atatagatgt caaatctata atcgtggggc tttctttagc
      241 tcttaaagct acagccttag gacttttggt tgctattcct gctttaatgg cttataatgc
      301 cttacttaga aaagtttccc tcttaagcaa tgcttataag gcaaataaaa atgcttaaac
      361 taccaaaaaa tgaaggttta aatatagtcc catttataga cattatgctt gttttgcttg
      421 ctatagtgct tagtatttca acctttattg cgcatggaaa aattcaaatc tcacttcctt
      481 caagtgaaaa tgctaccaat ataagcaata atgaaaaaaa acttcttata accatagacg
      541 aaaaaaatac tttttattta aatgacaaat tagctgattt aaatgaagtt caaaatgcta
      601 ttttttcact tgataaaaaa accatagtag aactaaaaag cgataaaaat gctaaatttg
      661 aaagctttgt aaaaattata gattttttaa aagccaaaga acatgaaaat tttcagattc
      721 ttactgagaa aaacaaatga aaactttatt tttaaattat aaataccaag cttcttatat
      781 aacttttata gtctttatac ctttgctttt tgtcattttt tactcaaatg acttttttaa
      841 aatggaaatt aaaaatgaag attctttttc tttagcaata aaacaattta cccaaactaa
      901 tccaacaaat gagaccaaac caacagaatc cattatagaa cctatcaaac caaaacctca
      961 gccaaaagtt attaaaaaaa ctcctgaaaa aatgcaaaaa aagataaaaa aaacacctcc
     1021 acacccaata ccaaataaaa ccccaatagc accaactcaa gaagttaaaa cttttgcaaa
     1081 aacaactgat acaaatgtca aacctaagat cactcaatta acacaaggaa aagataatca
     1141 ccctgtatta aagaaatcca aaaagctata caacaagcac aattttatcc aaggcaagca
     1201 aaaaaaatgc gtatgcaaga aactgtaaaa gtagaatttt tatggaaaga aaacaaaact
     1261 ttagcagatt taaaaatcat agaaagctca ggatatgatt tattagataa aagtgcttta
     1321 gaaagcataa gaaaagcttc tttaaatttt ccacactata acggagattt aagaattaca
     1381 ctacctatta tatatgattt taaaacccta agaggataaa attataattt gctacactct
     1441 cttatctaca atttgtgctt cttgattttc aattttattt tgaaaatctt tacttaaatt
     1501 ctgacttaat tcttgcaaag atttttgctt cagtttttca aattcttcag gattgctagc
     1561 ctcaagcttt gcttgctcat cagcacttaa agcacttaaa cctttttctt gagctttttg
     1621 aagcaaatct tcgtcttctt tttctttgat attattttcc ttatcatctt ttttattgat
     1681 tttttgcgga tctatggttt tcatagcatt agctccacca cctgatgctt ctttaatgtc
     1741 gcttaaaatt tctctcatgc taggttcttt aacatcacta tcatcaactt taccatcttt
     1801 atttacatct ttatcaataa aaaaatttaa tttttcttct atatttgcat catcagatat
     1861 tttttcatcg cttgttttaa agcctaaatt ttgcatactt tgttgaaggg tgcttgtatt
     1921 aaaatttaat tttacacttt gttgtttatt
//
LOCUS       DARGEM010000174         1888 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.174, whole genome shotgun sequence.
ACCESSION   DARGEM010000174 DARGEM010000000
VERSION     DARGEM010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.174"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            104..>1888
                     /locus_tag="SFZ78_001729"
     CDS             104..>1888
                     /locus_tag="SFZ78_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8212556.1"
                     /translation="MDNFIKKAYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCF
                     NESISLIFVYKDIKAFHLKPMIKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSII
                     QTRFICGSRILFKGIKIKFESIIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGG
                     LNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDE
                     FLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLK
                     QEYKFKTLVEVLEYLLKLEDKHVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRH
                     SFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQ
                     KLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNAL
                     KDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLEN
                     AKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDI
                     VMISKLAKENDFKFWFNNETNLSLQIVAP"
BASE COUNT          713 a          186 c          295 g          694 t
ORIGIN      
        1 taaagaatta gaaattttta aaaaaaatct tagttcctat acccaaagtt gtagaaaatt
       61 ttttcttaag caaggggcgt ttagcttata tcattctaaa aatatggata atttcataaa
      121 aaaagcttat gatatagttc ttaaagatta ttttgatgat ttttcacctc caagtgataa
      181 tatccctttt tgtgttttag caagcaaagc atatgcaaat aatagtcttt gttttaatga
      241 aagtatttct ttgatttttg tttataaaga tattaaggct tttcatttaa aacctatgat
      301 taaggctttt atcgaaattt taaatgatgc gcatttgcaa attgattcgg ttatcttaga
      361 atttaatgga ctttataatg ctagcaatga gcttaagact tccataatac aaactcgttt
      421 catatgtggt tctaggattt tatttaaagg gattaagata aaatttgaga gtattataaa
      481 agaaaataaa aatgattttg ccaagctttt gctagaaaat tttaaagaat ttgacattcc
      541 atttataaag caagaattta atatcttaaa agattttggc ggattaaatc atttaagatc
      601 tttagagagt ttgcttgttc tttttaagac ttctccaaaa aattatgctt taaattttat
      661 agatgaaaaa aatttaagcg agttgcgttt agctggagat tttttacttt ctttaaaatc
      721 agcgatgaat ttattaagtg ctaaagatga ggatgaattt ttacttatta atgttcatga
      781 tttgagtgaa ttaatgtata aaaaagctaa aaaacatttt ggagcaaatg agttgttggt
      841 tcaaaaggct ttgcaaagta tgcatactat aggtttttat acacactttt tagcaaagca
      901 aattcaagat ggattaaatc atactcttaa acaagaatat aaatttaaaa ctcttgtgga
      961 agttttagaa tacttattaa aacttgaaga taaacatgtt attttcgatc ttaacttggt
     1021 ttttgcccta agaagattga aatacggtaa aaaagatata gaaaaagctt taatactttt
     1081 tgagaaaatt ttttataaaa ggcatagttt ttgtgtttta aaacttttgc ttgatagtgg
     1141 aattttaaaa gatttatgta agcctttttg gacagttcgt tttttaagcg atgaagaagg
     1201 aaattatagt tttgatgagc aagtttttct tatgttaagt gaatttgaaa aatacgaaga
     1261 tgagcttgag atactccaaa aacttaaaac cgatgaaaaa atgattttaa agcttgtgat
     1321 acttttaagc gctatagaaa gtgaaaatga aatttcttta gcaggcatat atagagcgta
     1381 ttgctctaaa tttgatttaa agaatgaaat tttagaatgg ggtcttaaga tatttaaaaa
     1441 caataatgcc ttaaaagatc ttgtagaaaa agaagatata tacaatccta ttgttgtaag
     1501 tagcttggtt tctaagctag aaaatttaga aaatttagag cttttatata ctttaacttg
     1561 gctaaaggct aaggctttaa attataatgc tttttatttt agagttcttg ataaactttt
     1621 agaaaatgca aaacaaggtt ttgaagatga aaatctactt gaagaaagcg caagaagagt
     1681 aaaaaaagaa ttaacactta aaagaagtaa gattttttta gagcaagatg aaattttgca
     1741 agataaaatc atacatatca aatcaaatct ttttattata aaaaatactt ttgaagatat
     1801 tgttatgatt tctaaattag ccaaagaaaa tgattttaaa ttttggttta ataatgaaac
     1861 aaatcttagt ttgcaaattg ttgcacca
//
LOCUS       DARGEM010000175         1861 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.175, whole genome shotgun sequence.
ACCESSION   DARGEM010000175 DARGEM010000000
VERSION     DARGEM010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.175"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..167)
                     /locus_tag="SFZ78_001730"
     CDS             complement(<1..167)
                     /locus_tag="SFZ78_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Replicative helicase"
                     /protein_id="HEG8212557.1"
                     /translation="MKDYSKEINDLKKIKSQVIDKLDFKEFENIKSQINETSCNPSKI
                     ISQKNANIKNNS"
     gene            complement(164..1279)
                     /locus_tag="SFZ78_001731"
     CDS             complement(164..1279)
                     /locus_tag="SFZ78_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212558.1"
                     /translation="MSISLFNDEIKAYIKNYYSIVDFLYLRYGLEFDKAGNERHNKSL
                     KIKTNTCLITDFNGSFSGDIIDFIAFKENVELKEALIIFSDFNRLPTQKVGSFKPQKE
                     PLKDNSYLKNIAYSLQANFNLANSDFIECKALEKAFFNDFRLFMHLCKLNFLKDDEFE
                     SILKDYFAFSKDDKSLAFILKDKNEIKSVAIREKLFKNELVKWFKVKGSSNKFIKLIK
                     AKEKGLLKDYCFIFSGIKEIIVSELLGLNAVCFQSDSMMKNIHSHEQINELLNLIDNK
                     RIVFIVENDESSFKANLELLKELIQINPLEKGYCVFNYDEVKNADFIDFLAYLMKELR
                     QDYQRDKKGLNSFFSYMEKYFKNYFNKKMNLFLKVIK"
     gene            complement(1331..1576)
                     /locus_tag="SFZ78_001732"
     CDS             complement(1331..1576)
                     /locus_tag="SFZ78_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212559.1"
                     /translation="MNNKQALEYLKSELCFIFNTRFRYFDFEIFNLLEKKIQILQKLP
                     DFEREIKELLVILESNKKLFLKKNTFIKKEQKRQILL"
     gene            complement(1587..1769)
                     /locus_tag="SFZ78_001733"
     CDS             complement(1587..1769)
                     /locus_tag="SFZ78_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8212560.1"
                     /translation="MQDTNKDFLTIQEVITLYSLSKDTQNKYRMQKKIPYIKIGKKIF
                     YEKVKLDEWFKNHTIN"
BASE COUNT          614 a          264 c          176 g          807 t
ORIGIN      
        1 gaattatttt ttatatttgc atttttttgt gatataattt tactagggtt gcaacttgtt
       61 tcatttattt gacttttaat attttcaaat tctttaaagt caagtttatc tataacttgg
      121 ctttttattt tttttaaatc attaatttct ttactataat ctttcatttt attaccttta
      181 aaaataaatt cattttttta ttaaaataat tcttaaagta tttttccata taagaaaaaa
      241 aactatttaa gcctttttta tctctttggt agtcttgtct taactctttc attaaataag
      301 ctaaaaaatc tataaaatca gcgtttttta cctcatcata attaaaaaca caatagcctt
      361 tttccaaagg atttatttgt attaattctt ttaaaagctc taaattagct ttaaaactgc
      421 tctcatcgtt ttcaactata aaaactattc ttttattatc gatgaggttt aaaagctcat
      481 ttatttgctc gtgtgagtgt atatttttca tcatgctatc actttgaaaa caaacagcgt
      541 ttaatcctag caattcactt actataattt ctttgatgcc actaaagata aaacaataat
      601 cttttaataa gcctttttct ttggctttta taagttttat aaatttattg ctactacctt
      661 taactttaaa ccatttgact aattcatttt taaaaagctt ttctctaata gccacgcttt
      721 taatttcgtt tttatctttc aagataaaag ccaaactttt atcatctttt gaaaaagcaa
      781 aatagtcttt taaaatactt tcaaactcat catcttttaa aaaatttaat ttacataagt
      841 gcataaaaag tctaaaatca ttaaaaaaag ctttttctaa agccttacat tctataaaat
      901 cgctattagc taaattaaaa ttagcctgta aagaataagc tatatttttt aaatagctat
      961 tatcttttaa aggctctttt tgtggtttaa agctacccac cttttgcgtg ggtaacctgt
     1021 taaaatcact aaatataatc aaagcttctt ttaactctac attttcttta aaggctataa
     1081 aatcgattat atccccacta aaacttccat taaaatcagt aatcaagcaa gtgttagttt
     1141 ttattttaag gcttttattg tgtctttcat ttcctgcttt gtcaaactcc aaaccatagc
     1201 gtaaatataa aaaatcaact atagaataat aattttttat atacgccttt atttcatcat
     1261 taaaaaggct tatgctcatt ttaagccttt aatttgtgtt ttaaagcttc ataagttgcc
     1321 ttacaagcat ttataaaaga atttgccttt tttgttcttt tttaatgaaa gtattctttt
     1381 taagaaaaag ttttttatta ctttctaaaa ttactaaaag ctcttttatt tctctttcaa
     1441 agtctggtaa tttttgcaaa atttgtattt ttttctcaag taaattaaaa atttcaaagt
     1501 caaagtatct aaatctagta ttaaatataa aacataattc gctttttaaa tattctaagg
     1561 cttgtttatt attcataact accgccttaa ttgatagtat ggtttttaaa ccactcatca
     1621 agcttaactt tttcataaaa gattttttta cctattttaa tataaggtat tttcttttgc
     1681 attctgtatt tattttgagt atctttgctt aagctgtaaa gtgtaattac ttcttgtata
     1741 gttaaaaagt ctttgtttgt gtcttgcatt ttgtgtcctt tctaatttta ttaatgcaat
     1801 taataaagcc attaaaaagg aattagtaag tttaaattta ttacaatttc ttttaagggc
     1861 t
//
LOCUS       DARGEM010000176         1858 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.176, whole genome shotgun sequence.
ACCESSION   DARGEM010000176 DARGEM010000000
VERSION     DARGEM010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.176"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1637
                     /locus_tag="SFZ78_001734"
     CDS             <1..1637
                     /locus_tag="SFZ78_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212561.1"
                     /translation="GFGNGILYKILLQNQALKRIIIFEKELELIFLALNFIDFSKDLS
                     LGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHIANDFYEYYKEDILKLNKLNMQI
                     IKNHNLMRGNDPKDAMQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVSTGPSL
                     TKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERDEIVAECFNNDFKDFDK
                     DIIFLVASLVHKKTISYLKKNKRKYILIIKGQPFARCLGLDDYGYINAGMSVSHMAYE
                     LAENLGHNNIILIGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDRFSTTAYGGNGKV
                     QSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIESAIEKPFKELCENLLENKKDKKF
                     KKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKECKKVQKQIHNLTHGKNKLSLEQI
                     NQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTPLYLKDIKDESDKQNKLFAWIYA
                     HESLIENIIELLEAQDKRLKIAILPLQDFLEKKKAL"
     gene            complement(1668..>1858)
                     /locus_tag="SFZ78_001735"
     CDS             complement(1668..>1858)
                     /locus_tag="SFZ78_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8212562.1"
                     /translation="QVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGS
                     YAMSQANAVQQNVLKLLQ"
BASE COUNT          719 a          262 c          273 g          604 t
ORIGIN      
        1 atggttttgg aaatggaatt ttatataaaa ttctacttca aaatcaagca cttaaaagaa
       61 taatcatctt tgaaaaagaa ttagagctta tctttttggc cttaaatttc atagatttta
      121 gcaaagattt aagcttaggg cgactcatta ttttacatca tgatgatatt aatcttccta
      181 aaatggataa agtttttcgt ttgatagggg atttgtttta tcgttcttac aatctacaca
      241 ttgctaatga tttttatgaa tactacaaag aagatatttt aaaacttaat aaactcaata
      301 tgcaaatcat caaaaatcac aatcttatgc gtggtaatga tcctaaagat gccatgcaag
      361 gtatagaaca atttgtttat aatcttcctc aaatgattac tcatcctagt tataaagaat
      421 tactttctaa aagaaagggt ataagtgata cagctatcat tgtttctaca ggaccatctc
      481 ttactaaaca acttcctttg ttaaaaaaat atgctaataa agctacaatt ttttgtgcgg
      541 attcttctta tcctatttta gctaagcatg gtataaaacc tgattatgtt tgtatgttgg
      601 aacgcgatga aatagtagct gaatgtttta ataatgattt taaagatttt gataaagaca
      661 tcatttttct agtagcttct ttggtgcata aaaaaaccat ttcttatctt aaaaaaaata
      721 aaagaaaata cattttaatc ataaaaggcc agccttttgc gagatgcttg gggctagacg
      781 attatggata tattaacgca ggcatgagtg tatctcatat ggcttatgaa ctggctgaaa
      841 atttaggaca taacaacatc attctcatag gtcaggattt agcttatgcc aaagatgggc
      901 aaacacattc tcaaggtttc atccatgcta atttacacaa tggagactat gaaagggact
      961 tagatagatt tagcactaca gcttatggag gaaatggaaa agttcaaagt tctgaaattt
     1021 ggacactttt tagacaaatt tttgaaaatt tcattgcttt tagcaaaagt aaaacttata
     1081 attgcactga aggaggtgct aggatagaaa gcgctataga aaaacctttt aaagaacttt
     1141 gcgaaaattt actcgaaaat aaaaaagata aaaaatttaa aaaattacaa gttttaaata
     1201 ctaaagaaca agtaaaactc ggattaaaaa tctatcaaaa aattaaaaaa aatatgaatt
     1261 tatccttaaa ttttaaaaaa gagtgtaaaa aagttcaaaa acaaattcac aatcttaccc
     1321 atggaaaaaa caagctctct cttgaacaaa taaaccagaa tatagacaaa atcaaagaaa
     1381 aactttcaaa taaaaaatat ctctttttac aagaaatttt aggccctact ttacatcatg
     1441 aacaaagtat attaacgcct ttatatctta aagatatcaa agatgaatct gataaacaaa
     1501 ataaactttt tgcttggatt tatgcgcatg aatctttgat agaaaatatc atagaacttt
     1561 tagaagctca agacaaaaga cttaaaatcg ctattttacc tttgcaagac tttttagaaa
     1621 agaaaaaagc actttaaaag cttagatgca taaaagcatc taagaaatta ttgaagaagt
     1681 tttaaaacat tttgctgcac tgcattagcc tgactcatag cataagaacc tgattgcgca
     1741 aggatgttat atttagaaaa atttgcactt tcagctgcaa agtctacatc tcttatggtt
     1801 gattcagctg ctttaacgtt tacttgagta acagtgatgt tgtttatagt aacttgaa
//
LOCUS       DARGEM010000177         1832 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.177, whole genome shotgun sequence.
ACCESSION   DARGEM010000177 DARGEM010000000
VERSION     DARGEM010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.177"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            431..1423
                     /locus_tag="SFZ78_001736"
                     /pseudo
     CDS             431..1423
                     /locus_tag="SFZ78_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935932.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
     gene            1424..>1832
                     /locus_tag="SFZ78_001737"
     CDS             1424..>1832
                     /locus_tag="SFZ78_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212563.1"
                     /translation="MIRLKKILKISSFILLPLIIIWSMIFGWGWFVPYSLQPSYHEFK
                     EMCKLEPKIYQSNGGKIDKEYYNKLLAYFNTNFEEVLQGNKGMANVSNSQYIQRENIE
                     LYSFNEDRDKGRLSFSLGLDIEKNKTTNEILPLK"
BASE COUNT          742 a          216 c          295 g          579 t
ORIGIN      
        1 aggtgataga atgaaaaaat ataaaaagat tttagtgcta ttatcaccaa taattttaat
       61 tatattattt tatacccctt tttatatcct agctattggg aatttagaag gttatgtaaa
      121 ttaaataatt atccaaaaag tgaggaaaaa tataatagaa tcttagctta ttttgataag
      181 agtttagatg gtagtatagg aaaaaatggt tatgcaaaaa taggttatgg taatagaata
      241 gatttaggta tatatattta ttataagaat ccaaataaca aaacattaac ttttaaaaat
      301 attaataaaa tatattttag accaatatgg aaaaactatg caccaaatat ttatggtaat
      361 gagggtaata tggattttag attaaagctt gacggtgaaa tagattgcag aagcttatta
      421 ggagaattat atggataata aacaataaat caataaacta agggacatgg cagaacttgc
      481 acaggcaagt tatggatatt ttcattatgt tgataataaa tttgatataa aagatgaaga
      541 taaaattgtt acctttgaaa atgttttaga tattacctat aaaaactcta aaattattga
      601 tgaaagagga tttaaaatcg gcaagctcga tggcgacttc tccccactcc aagctaaaca
      661 attcttttct tgctatgatt tgttaaaaca ttgctctaat acgggatctg gctttagtgc
      721 tactttattt ggagaaaaaa gaaaacaaat tgatagtaaa actaaagaaa aaagctatac
      781 aagtgaatat ggctatatca attatatttt agccattaga ggaacagaaa tgagttcttt
      841 caaagatttg tttgtagctg atgcttcttt agccataggc tctataccta aagcccaata
      901 tgatgatatg ctaaactttt atgaaacttg tattaaagat tatccacaaa tcaaagaaaa
      961 agattctctt actattacag gacactctct tggaggctgt ctagcacaac tctttgcttt
     1021 aagtatctgt gatgatagga atagaaacaa tatcaaagct ttatatactt ataatgcacc
     1081 tggagctaga aagatagcac ctccttatga ttatatagta aaactcttta tatttcacag
     1141 taaagaacaa caagaaagat ttataaaaga agaaatagaa aatatagcaa atagagcaag
     1201 agatttaggc aaagataata ttttcttaga aagtaagata cgagagatat tacacaagat
     1261 aatccaagaa aaacaaagtc aatactatgg gataacaatg agtctttcta ctcatacaac
     1321 aatgatgaca cttgatatta atgccattcc tatcttagca gatattgcac catattatag
     1381 acaacttgct tataataata tagaatctaa agagagtgta taaatgataa ggcttaaaaa
     1441 gattctaaaa atatcaagtt ttattctact tcctttgata attatatgga gtatgatatt
     1501 tggttggggg tggtttgtgc cttatagcct acaaccgagt tatcacgaat ttaaagagat
     1561 gtgtaagcta gaacccaaaa tatatcagtc taatggtggt aagatagaca aggaatacta
     1621 taataaatta ttagcttatt ttaacacaaa ttttgaagaa gttttacagg gaaataaagg
     1681 aatggccaat gtttcaaata gtcaatatat ccaaagagaa aatatagaat tatatagttt
     1741 taatgaagat agagacaaag ggcgtttatc gtttagtcta ggattggaca tagaaaaaaa
     1801 taaaactact aatgaaattt taccattaaa aa
//
LOCUS       DARGEM010000178         1776 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.178, whole genome shotgun sequence.
ACCESSION   DARGEM010000178 DARGEM010000000
VERSION     DARGEM010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.178"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..961)
                     /locus_tag="SFZ78_001738"
     CDS             complement(<1..961)
                     /locus_tag="SFZ78_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8212564.1"
                     /translation="MFKKIFDFVKSRLFITAFLLCCIFLLSILFWFWGSLVAFNDIYI
                     FSSSFLRFSIILIIWLIVFLFFLLKPIINFISSLKSEKRLKFKVLKKEADEFIYKSKR
                     NFFLSLKDAKETWKNDLKTKNLPLIIIIGNEGAGKSTFINYSDIEYPLSDSLESYKKF
                     HKSTRNFALYVSKKGALLDTEGNYFSQEEFFKPTSSDEIPEDDIDKNRDFLIKKNIWK
                     KFLTFLNKNFFHSKLNGIILVVDTVIFLNNPKEYSKNLIRYLTKRVNECEKTLNLKLP
                     IYIVFSKLDLIEGMKEYFDIFDKKISDKILGLSFDKILSEEFLN"
     gene            1079..1594
                     /locus_tag="SFZ78_001739"
     CDS             1079..1594
                     /locus_tag="SFZ78_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HEG8212565.1"
                     /translation="MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEV
                     SHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTA
                     TSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
                     SGSDDWREGKA"
BASE COUNT          665 a          237 c          235 g          639 t
ORIGIN      
        1 tatttaaaaa ttcttcactt aagattttat caaaagataa tcctaaaatt ttatctgaaa
       61 tttttttatc gaaaatatca aaatactctt tcatgccttc gatcaagtcg agttttgaaa
      121 aaactatata aataggcagt tttaaattta aagttttttc acattcattt actctttttg
      181 ttagatatct aataagattt ttggaatact ccttaggatt atttaagaaa attacagtgt
      241 caacaactaa aataattcca tttagtttgc tatgaaaaaa atttttattg agaaaagtaa
      301 ggaatttttt ccatatattt tttttaatta aaaaatctct atttttatct atatcatctt
      361 cgggtatttc atcgctactt gtaggcttaa aaaattcttc ttgtgaaaaa tagtttcctt
      421 ctgtatctaa caaagcacct ttttttgata cataaagtgc aaaatttcta gtagacttat
      481 ggaatttttt ataagactct aaactatcac taagtgggta ttcgatgtca gaataattaa
      541 taaaagtgct ttttccagct ccttcatttc ctatgatgat aattaagggt aaattttttg
      601 tttttaaatc attcttccat gtttctttgg catctttaag agataaaaag aagtttcttt
      661 tagatttgta aatgaactca tcagcttctt tttttaggac tttaaatttt aatctttttt
      721 cactttttaa agaagatata aaatttataa taggctttaa taaaaaaaac aaaaaaacaa
      781 taagccaaat tatcaaaata atactaaatc ttaaaaatga actactaaaa atatatatgt
      841 cattaaaagc tactaaagaa ccccaaaacc aaaataaaat actcaaaaga aaaatacaac
      901 aaagcaaaaa agcagttata aataatcttg atttcacaaa atcaaatatt tttttaaaca
      961 tcattattcc ttagtaaagt aaaaacaaat taatatgcaa atattttgca aaaatttaat
     1021 agattaagat taaaatgata caattttgaa tgttaaaaaa aattaaagga gtttttttat
     1081 ggctgaacca gcgtttataa aaattgaagg ttccacacaa ggtttgattt caagcggtgc
     1141 atctactgaa gcgagtattg gcaatagata taaatcgggt catgaagatg aaatcatggc
     1201 tcaagaggta tctcatattg taaccgtacc tgttgatcag caaagcggac aaccttctgg
     1261 acaaagagtt cataagcctt tttcttttac ttgctcatta aataaatctg tgcctttgct
     1321 atataatgca cttaccaaag gagaaagact tccaacagtc gaagttcatt ggtttagaac
     1381 cgcaacaagt ggcggatctg aacatttttt tactacaaaa ttggaagatg caattattac
     1441 aaatattgaa ttaataatgc caaatgcgca agagtcaagt aatcatgata aaaccgagct
     1501 tttaaaagtt tcaatgagct atagaaaagt agtttgggaa catactgctg ctggaactag
     1561 cggaagtgat gattggagag agggcaaagc ttaattataa tttatcttaa ataatcctga
     1621 ctaaaataca taattatagt tgggattgta tcgtgaatta tatccatggc ataattatga
     1681 tacgacctta tacttatttg tactaataat ttgcataatt aaagcttgtt tttatattat
     1741 ttttatcctt tagatttgca tttgattttt attcta
//
LOCUS       DARGEM010000179         1773 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.179, whole genome shotgun sequence.
ACCESSION   DARGEM010000179 DARGEM010000000
VERSION     DARGEM010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.179"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1018
                     /locus_tag="SFZ78_001740"
     CDS             <1..1018
                     /locus_tag="SFZ78_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212566.1"
                     /translation="LIPKYIPAKFENLEEEVKKIKNPLWLANKNPNYIKPKFYDGMGG
                     GYYFESPNNLEYQCKIEKDTQILSQEQIISYVKELYSKNTMIIKNYIDAINKNHGIKP
                     FVFNDEIYDQLGEVGILTKEQANNFKDKSYIKKNPILLAMLDYLAKQNKKDEDYLITF
                     DDEYFYADLVWSLKDFLLELSYGLFQDETKLLFNPAAYMDDTKIDYKNLNEEINKRYE
                     KILLDMGFEGENGYFNDYYDYGFGNNGIFKFNIYDYFAYDEIGVRPYVSPRSPFYSPN
                     FVYSDGNYHGDAKLIPSALGKYYFELSYQKGVYIELLRPYYPSIKDLPEGWDNKMLEK
                     ANLK"
BASE COUNT          653 a          236 c          269 g          615 t
ORIGIN      
        1 actcatccca aaatacatac ccgctaaatt tgaaaattta gaagaagaag ttaaaaagat
       61 aaaaaatcct ttatggcttg ctaataaaaa tcctaattat attaaaccta aattttatga
      121 tggtatgggt gggggttatt attttgaaag tccaaataat ttagagtatc aatgtaaaat
      181 agaaaaagac actcaaattt taagccaaga acaaatcatt tcctatgtga aagaacttta
      241 tagtaaaaac acaatgataa taaaaaatta tattgatgca atcaataaaa atcatggcat
      301 aaaacctttc gtatttaatg atgaaattta tgatcaatta ggagaagttg gcattcttac
      361 aaaagaacaa gctaataatt ttaaagataa aagttatatt aaaaaaaatc caatattgct
      421 tgctatgctt gattatttag caaaacaaaa taaaaaagat gaagattatt taatcacttt
      481 tgatgatgag tatttttatg ctgatttggt ttggagttta aaagatttct tattagagct
      541 ttcttatggt ttgtttcaag atgaaaccaa gcttcttttt aatcctgcag cttatatgga
      601 tgacacaaaa atagattata aaaatttaaa cgaagaaata aataagcgtt atgaaaaaat
      661 attgcttgat atgggatttg aaggagaaaa tggttatttt aatgattatt atgattatgg
      721 ctttggcaat aatggtattt ttaaatttaa catatatgat tattttgctt atgatgaaat
      781 aggagtgcgc ccatatgttt ctcctagaag ccctttttat agccctaatt ttgtctattc
      841 tgatggaaat tatcacggag atgcaaagct tatcccttct gctttaggaa agtattattt
      901 tgagctttcc tatcagaaag gagtttatat agaactttta cgcccttatt atccaagcat
      961 aaaagattta ccagaaggtt gggacaataa aatgctagaa aaagctaatt taaaataaat
     1021 atgagcatcc gtgaataaac ccttctacaa acttaaaaga ttttatatac cttgtggtgt
     1081 gcttatagct ttgattattt tataagctta acttatcatt ttttacaacg acctttagag
     1141 cttatctttt gggatagata tgatatatcg aaattatcta ttaataacga agagaaaaat
     1201 tttaaaacaa tgaaaactgt gattactcct actttcgcta acacttagaa gtaggagctt
     1261 cctaactaaa gccaagtatt cttagctagc tcgaaaggct tcttgtttat agcttacacc
     1321 taaattttca tataaaatat taaaacttat acaaaaatct ttcataaatt gtttcagaag
     1381 ttaaagaatt tgtttggtat aattacatta agggtttaag ccgcaggctg accccctacg
     1441 gctaaattgt gaaacccctg aaaggaggta cataaaactc attctagtgg ttattatact
     1501 gctttgttta tttatagtca aggcatatta accaagctca atttttgggg caactggagt
     1561 gggttacctg cggtatcaaa caaactttta accaagctta tctcctttat attgaattat
     1621 tttatttttt aatttatatt tttcttgctt atactaaaag ataagattca attataaaca
     1681 aaatgtatta agaagctaaa gagtttgttt ggtataatta taaaaggtag atgccaaagg
     1741 gctacaaccc tttagcgtta atttaccgcc cag
//
LOCUS       DARGEM010000180         1761 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.180, whole genome shotgun sequence.
ACCESSION   DARGEM010000180 DARGEM010000000
VERSION     DARGEM010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.180"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            59..826
                     /locus_tag="SFZ78_001741"
     CDS             59..826
                     /locus_tag="SFZ78_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8212567.1"
                     /translation="MGVNEEGYNELTLSNIKDKEQIYLKAQKDYDELVQHNFTQRILN
                     DKDSIVDGIYNERIKKVHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDN
                     KVRVSKNSSEYVGENKDIEIGANQNTIIHKDEIRNVKGNKKEVVEGHYGINVSDKMQV
                     LSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTYAKTIHELKADSEATIQVG
                     ETIINAKPDCVIIKAGGVEVTIDSNGLVVRGGELKAE"
     gene            840..1619
                     /locus_tag="SFZ78_001742"
     CDS             840..1619
                     /locus_tag="SFZ78_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212568.1"
                     /translation="MNKPFYKLKRFYIPCGVLVALIIFTSLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1603..>1761
                     /locus_tag="SFZ78_001743"
     CDS             1603..>1761
                     /locus_tag="SFZ78_001743"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212569.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNVKIKN
                     YSSGYCKYY"
BASE COUNT          735 a          201 c          278 g          547 t
ORIGIN      
        1 tccaagttta gtaaatcttc cttttaatga tcaccaaact tctctttctt ctaaaaccat
       61 aggtgttaat gaagaaggtt ataatgaact taccctctca aatataaaag ataaagaaca
      121 aatttattta aaagcgcaaa aggattatga tgaattagta caacataatt tcactcaaag
      181 aattttaaat gataaagatt ctatagtgga tggaatttat aatgaaagga ttaaaaaggt
      241 tcatactcaa accatagact tagctaaaaa tgtcaatgta ggaggagaat acttaactaa
      301 tgtaggctta tctaaagata ccatagtagg attaagcaat accttaaatg taggagtaga
      361 taataaagta agagtatcta agaattctag cgaatatgta ggagaaaaca aagatataga
      421 aataggtgct aatcaaaaca ctattatcca taaggatgag ataagaaatg tgaagggaaa
      481 taaaaaggag gtggttgagg ggcattatgg tattaatgtc agtgataaaa tgcaagtgtt
      541 aagcgagaaa gagatggatt ataaaagcaa agataatatt ctttttacaa gcaatgaatc
      601 cataggattt gaaagtgata aaaatacaag catggtagct gataatatca caacttatgc
      661 aaaaactatt catgagttaa aagccgatag cgaggcgact atacaggtag gagaaacaat
      721 tattaatgca aaacctgatt gtgttatcat taaagcaggt ggagttgaag taactataga
      781 ctctaatgga cttgtggtta gaggtggaga acttaaagca gagtaataaa ggataaacaa
      841 tgaataaacc cttctacaaa cttaaaagat tttatatacc ttgtggtgtg cttgtagctt
      901 tgattatttt tacaagctta acttatcatt ttttacaacg acctttagag cttatctttt
      961 gggatagata ttattatgaa aaagaatatc aaaatgctaa agatatgtat aaactattta
     1021 aaagtaatga agaagaattt aaaaaagttt ttaaagagca aaacttaaat gaagaattaa
     1081 aaacaaatca aaaagaattg ttaaattata tgcatcattt caaaagagat tctaatttta
     1141 tgcaaatttt aggtttggat aatgcttatc ttaaagctct tagagataag acaagtatat
     1201 ttggaagaaa aagtgaaaat aatcttaatt atttttatct tgcttctaat agcactacta
     1261 atttagatga aatgaataat tttataagca ttatagataa atatatcatt tttatcaata
     1321 aaatagatac attgcctgac acttatacac tcatgaaaat agcctttaac gctgattatt
     1381 ttctttttaa tctcgtccca tttgcttcaa gcctagataa aaactttatt tgctctatac
     1441 cgcaaaaaga acaattatta gaaaatatga taaattctta tgaaaaaatg gatttattat
     1501 acaaaacaaa actaaaaacc gaaattcaag aaatgatata cccagcgata tatgcaacaa
     1561 aaaaacttaa tcatttcata gatattgcca aaggaagatt aaatgcatgt ggaaaataat
     1621 ttaagtcctg aagatagaca aggtatagaa aattacctta ttattttaaa tacgataagt
     1681 tttctaggcg atttgaatat aaaatataac aatcataatg taaagattaa aaattattct
     1741 agtggttatt gtaagtatta t
//
LOCUS       DARGEM010000181         1750 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.181, whole genome shotgun sequence.
ACCESSION   DARGEM010000181 DARGEM010000000
VERSION     DARGEM010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.181"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1750
                     /locus_tag="SFZ78_001744"
     CDS             <1..>1750
                     /locus_tag="SFZ78_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8212570.1"
                     /translation="CSLMSKNSHIYNIENKNKSYLFLKQLDNLFALAKTFILEVQEEN
                     KLKNNSYLRGVYFVSAYQENIPRNFLLDAICEKYNCKKVLSKSNIIHNKQSYFVKSLL
                     EDLIFTDYSLSTMKSYSKKLSFLIIILIISFGTYAISSYFISKNNKEFEKSQNTLRSL
                     QLLLKDQDYQNLNIKQKADFLIELRNILNTYPELWQDNNIFQYLNLNLSYKGFKEAKQ
                     LYYKLNEDVLKNTLLKEMEYTLLTDTNKENLIKTLYMYRSLFKQKYFNKEILKIWINE
                     NWNTLSKYSISKDDFLEGVDELKQFNLKSFTEDENSIHTGKRKLESISRTQRIYILLN
                     FLNSDKPKEKYLIKEDLGFAANSVFSNNSQITSIDKIYTKVGMMDFLNDLNQQVDTAI
                     NIESWMLDNNFKENKNTLTMGILKLYLSEYQNAWQNLLASLQPVRYNTKEAMLNELNI
                     LSKKENPLYSLLKIVSSNTNLNDAVLLTQAYNLGLNAGEIRSNFIGVSNAFTQYHKLV
                     NKNTLLSVGNIEVGKGTDDEKILDILNTNITNMSNKIIDFSSNNNQSAEEKISYALGG
                     NKDANDPFAVFQMNIKK"
BASE COUNT          732 a          208 c          220 g          590 t
ORIGIN      
        1 tgttccttga tgagtaaaaa ctcccatatt tataatatag aaaataaaaa taaaagctac
       61 ttatttttaa aacaacttga taatttattt gcattagcaa agacttttat tttggaagtg
      121 caagaagaaa ataagcttaa aaataattct tatcttagag gagtttattt tgttagtgcc
      181 tatcaagaaa atattcctag aaatttctta ctcgatgcca tatgtgagaa atataactgc
      241 aaaaaagtat tatcaaaatc caatattata cataataaac aaagctattt tgttaaatca
      301 ctgctcgaag atttaatttt tacagattat tctttaagca ctatgaaatc ttattctaaa
      361 aaattatctt ttttaattat aattttaatc ataagctttg gaacatatgc tatatcttct
      421 tattttataa gtaaaaataa taaagaattt gaaaaaagcc aaaacacctt aagatcttta
      481 caattgcttc ttaaagatca agattatcaa aatttaaata ttaaacaaaa agctgacttc
      541 ttaattgaat tgagaaatat tttaaatact tatcctgaac tttggcaaga taataatata
      601 tttcaatatt taaatctaaa tctctcatac aaaggattta aagaagctaa acaactttat
      661 tataaactga atgaagatgt gttaaaaaat actttattaa aagaaatgga atatacttta
      721 cttaccgata caaataaaga aaatttaatc aaaacattat atatgtatag atctttgttt
      781 aaacaaaaat attttaataa agaaatacta aaaatttgga ttaacgagaa ttggaatact
      841 ttaagtaagt attcaatctc taaagatgac tttctagaag gggtggatga gcttaaacaa
      901 tttaatctta aatcttttac agaagatgaa aacagtatac atacaggaaa aagaaaactt
      961 gagagtataa gtagaactca aagaatttac attcttctta attttttaaa tagcgataaa
     1021 cctaaagaaa aatatcttat aaaagaggat ttaggttttg ctgcaaatag tgtattttca
     1081 aataattctc aaataacttc tatagataaa atatatacaa aagttggtat gatggacttt
     1141 ttaaatgatt taaatcaaca agttgacacc gcaatcaata ttgaatcttg gatgctagat
     1201 aacaatttta aagaaaataa aaacactttg actatgggta ttttaaaatt atacttaagt
     1261 gaataccaaa atgcttggca aaatctactc gcttcattgc aacctgttag gtataatacc
     1321 aaagaggcaa tgcttaatga gcttaatatc ttatcaaaaa aagaaaaccc tttatattct
     1381 ttgttaaaaa ttgttagttc taatacaaat ttaaatgatg cagttttact aactcaagcc
     1441 tacaatttag ggttaaatgc tggggaaatt agatcaaatt ttattggggt aagcaatgct
     1501 ttcacacaat atcataagct agtaaacaaa aatacacttt tgagtgttgg taatatagaa
     1561 gtgggcaaag gcactgatga tgaaaaaata ttagatattc ttaatacaaa tattacaaat
     1621 atgtccaata aaattataga ttttagttct aataataacc aaagtgctga agaaaaaatt
     1681 tcatatgctc ttggaggcaa taaagatgcc aatgatcctt ttgctgtatt tcaaatgaac
     1741 ataaaaaaat
//
LOCUS       DARGEM010000182         1733 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.182, whole genome shotgun sequence.
ACCESSION   DARGEM010000182 DARGEM010000000
VERSION     DARGEM010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.182"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            160..1068
                     /locus_tag="SFZ78_001745"
                     /pseudo
     CDS             160..1068
                     /locus_tag="SFZ78_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1103..>1733)
                     /locus_tag="SFZ78_001746"
     CDS             complement(1103..>1733)
                     /locus_tag="SFZ78_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8212571.1"
                     /translation="FCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFSYKCI
                     HCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNGKDAS
                     YSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPKAKEI
                     LSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
BASE COUNT          617 a          238 c          290 g          588 t
ORIGIN      
        1 tttatttttg ctttaaatat ataagttcta ttttaaatat aaacgaatat tattttaagg
       61 tttaaagctt ttttcttaaa atgtaattag gttttattga ctttttctaa ataaagtctt
      121 atactgaatt taaattacgc aaaataagga gggaaattga tgaataaatt ttctatagtt
      181 ttaactttgt tgttatgtgg aagttgtgct ttagccttag atccaaattt ggaaaaaact
      241 aagagtgcaa caggtattga tctgcctact gccaaatggt tattttggga aataaaattc
      301 ttaatgaaac aagcaaatat gtgggtccac aagccaaaga tcctaaaaaa agatttgcgg
      361 gaaataatct ttcttgttca agctgtcatg ctaatggtgg aagtgtgcaa aatcaatcgg
      421 gttttgtagg aatttaggca agatttccac aatataatgc aagaggagat aaagtaatta
      481 ccttagcaga taggatcaat ggctgttttg aacgctctat gaatggcaaa agaatgccta
      541 gtgatacacc tgaaatgaaa gccatgctaa cttatatgca atggttatct caagaagttc
      601 cagtaggagc taagatagaa ggatagggac ttaagaagat agatttcatc ttaagagcag
      661 atgatcctaa aaaaaggtaa ggcaatttat atggataaat gtgccgtttg tcatcaagaa
      721 aatggcttag ggcttaaaaa tgaggatagc acaggggcgt attatcttta tccaccactt
      781 tggggtgatg atagttataa tacaggaact ggaatgtatc gtcttatcaa agctgcttct
      841 tatattaaag aaaatatgcc tcaaggtgcg cctgacttaa gtcttgaaga tgcttatgat
      901 gtagcagctt acatgaattc acaagctcgt cctattaaag caaatagaaa taaagacttt
      961 ccagatagaa aggttaagcc tttagatatg gatgtaggac cttatgatga tagcttttct
     1021 acaacccaac atcgctatgg accttataca aatatgatca aaaaataatt tttaaggcaa
     1081 tttttattgc cttaaaaatt tattatttca tattacttaa ttttttaact agatcttcta
     1141 aatcttgcat cgaattgatt gcacttgggt taatttgata ttttccatta acaacaaaag
     1201 caggggtgcc ataggtttta gctatatcat tagctctttg aaactcgctt aaaatttctt
     1261 tagcttttgg ggtatttaaa aaatttaata cttcattttt atttacattc atagccttta
     1321 aacctatgtc gtaaaattca tttaaatttg aaaaatttct ttgcttgttt aaaaaataag
     1381 aaacaaaata aacatcagca agtttataag ataaactatc agaataactc gcgtctttac
     1441 cattttgttc atctttgtat tgagcaaagg caaaaagctc attcatttct ttggaaaatt
     1501 ccccattcat taaacttaca ggatagagtt taaaatgtaa atttggaaaa gcttctctca
     1561 gtttttcaag ggttccaaat ttatgatgat tgtaacaatg tatacattta taagaaaatg
     1621 cttctattac actattttca gagctaggta aacttggatt aagagtaata aaactattat
     1681 ttgctaatgc aaaacttgaa caaaatacaa gcgttaaaac aaatttgcaa aaa
//
LOCUS       DARGEM010000183         1724 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.183, whole genome shotgun sequence.
ACCESSION   DARGEM010000183 DARGEM010000000
VERSION     DARGEM010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.183"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..995
                     /locus_tag="SFZ78_001747"
     CDS             <1..995
                     /locus_tag="SFZ78_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8212572.1"
                     /translation="VDLEKIEFTSLIDDFLDKGSISFLTSEANKGKTFLSFAICKHLL
                     EFNKIRKIIYFDGDNSKITIKSRIKKSMQIGGYYFLDYPAFNYIQTSNALECGTDEIE
                     VDFNFIVEKYLEPLMQSGGLVNVFIVFDSLFNFFNGDMNDNKKVAEFMKIIKKISHKG
                     EATFLFIHHKGKSAENEFMGGVNFLNATDNLFKIQTSNNDGEILNIELNTKKARNFLP
                     YNLKVDIDLNTLDLKIERAINENDTNFLTKAKEIIEQKGEILQGELLELLEKSKTDTH
                     AIKKLESGKGLYFNIIEKSRATGGKALKYYVPLKENKTIINGIEINVEQTLFSE"
     gene            complement(1250..1456)
                     /locus_tag="SFZ78_001748"
     CDS             complement(1250..1456)
                     /locus_tag="SFZ78_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEG8212573.1"
                     /translation="MTNNDFESILKKCNLSKKEFATLCDLPYPTLMNWVKADKTPNWV
                     KSWLENYIKAQKYNKIKDLIKDDL"
BASE COUNT          695 a          186 c          265 g          578 t
ORIGIN      
        1 gcgttgattt agaaaaaata gaatttacat ctttaatcga tgattttttg gataaaggaa
       61 gtattagttt tttaacaagt gaagctaata agggtaaaac ttttttaagt tttgctattt
      121 gcaagcattt attagaattt aacaagatta gaaaaattat ttattttgat ggtgataata
      181 gcaaaataac cattaaaagc aggattaaaa aaagtatgca aataggggga tattattttt
      241 tagattatcc tgcttttaat tatatacaaa caagcaatgc tttagagtgt ggaactgatg
      301 agatagaagt tgattttaac tttattgttg aaaaatatct agaaccttta atgcaaagcg
      361 gtggtttggt taatgttttt atcgtatttg atagcctttt taactttttt aatggtgata
      421 tgaatgataa taaaaaagta gctgaattta tgaaaataat taaaaaaata agtcataaag
      481 gcgaagctac ttttttattt atacatcaca agggaaagag tgctgaaaat gagttcatgg
      541 gtggggttaa tttcttaaat gcgaccgata acctttttaa aatacaaaca agtaataacg
      601 atggagaaat tttaaatata gaattaaata caaaaaaggc aagaaatttt ttaccttata
      661 atttaaaggt agatatagac ttaaatacgc ttgatttaaa aatagaaaga gcaataaatg
      721 aaaacgatac aaactttctt acaaaagcta aagaaatcat agaacaaaaa ggcgagattt
      781 tgcaagggga gttattagag cttttagaaa aatcaaaaac cgatacacat gccattaaaa
      841 agctagaaag tggaaaaggg ttatatttta atataataga aaaatcaaga gcaacgggtg
      901 gaaaagcttt aaaatattat gtgcctttaa aagagaataa aaccatcatt aacggcatag
      961 aaataaatgt cgagcaaact ttatttagcg aataagtaaa aagctatgtg agtttaattc
     1021 atatagcttt ttacttaatt attatcttat agccatagct taataaaaac actcctaaaa
     1081 tcaaaaaagt atttttaccg ataaaacacc ttagacaaaa aataaaaacg cttaaaatcg
     1141 cttattttaa tttagtattt tttataaaaa gtggttgaag ggggtgtctt caaatttgaa
     1201 gacacctagc aattagcact gctcaatttt gagcacacat catcaaaact tacaaatcat
     1261 cttttattaa gtctttaatc ttattgtatt tttgagcttt gatatagttt tcaagccaag
     1321 atttaaccca gttaggcgtt ttatcggctt taacccaatt catcaaagta ggatagggca
     1381 agtcgcaaag agtagcaaac tcttttttag ataggttgca tttttttaaa atgctttcaa
     1441 aatcgttatt agtcataatt aagcctttat attaatttaa tagctatatt gtagcatata
     1501 gcattaaaat aatactttaa tacttgactt atagattaaa acaatatata attgtgattt
     1561 ttaattatta aatcaataca aaaggataaa aaaaatggaa aagtaagatt ttttgttttt
     1621 ccatagatgg aaaaacatag tatggaaaaa gaaaagattt taaaaaaatg taagaacttt
     1681 aagagtgaaa ataaactttt aaaggcttat tctaacttct cttt
//
LOCUS       DARGEM010000184         1714 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.184, whole genome shotgun sequence.
ACCESSION   DARGEM010000184 DARGEM010000000
VERSION     DARGEM010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.184"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..241
                     /locus_tag="SFZ78_001749"
     CDS             <1..241
                     /locus_tag="SFZ78_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212574.1"
                     /translation="ELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLE
                     QNKIEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            238..1236
                     /locus_tag="SFZ78_001750"
     CDS             238..1236
                     /locus_tag="SFZ78_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212575.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGIASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            1233..1523
                     /locus_tag="SFZ78_001751"
     CDS             1233..1523
                     /locus_tag="SFZ78_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEG8212576.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1510..>1714
                     /locus_tag="SFZ78_001752"
     CDS             1510..>1714
                     /locus_tag="SFZ78_001752"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="type III; catalyzes the formation of
                     (R)-4'-phosphopantothenate from (R)-pantothenate in
                     coenzyme A biosynthesis; type III pantothenate kinases are
                     not subject to feedback inhibition from coenzyme A and
                     have a high Km for ATP; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase"
                     /protein_id="HEG8212577.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKKFINLEPYFLFDTIY"
BASE COUNT          691 a          224 c          211 g          588 t
ORIGIN      
        1 tgaactaaaa caaatttata ataatgctca aacaaacact ttacttaaaa atattattgc
       61 attatcttta ggagataaat caatattttt aaaaaattat gataaattat tagaagctta
      121 caaactttta gagcaaaata aaatcgaaga agctaatgtt ttactttctc agataaaaga
      181 aaattcaagt ttaaatcaaa tagctaaaaa cctcaaacat tatcaaggca ttacacaatg
      241 aaaaaaatat ttttaacact attttgttta atatttctat gtgcttgtgg caccaaaaga
      301 caatattttg aaccaaaaca aaccgatgga gatttaagtc ataatagcaa tttaaaaagt
      361 aaaatcgttg attggaatct agtttctgca aaacttagca ataatacagc tatcttaaaa
      421 aataatatct ccatagacaa gtttaaactt cctaaaaatt atatgcttct agcttatcaa
      481 gatggggaat attttactgc agataataat ggaaatttaa aaatttttga caattcttat
      541 aatgaaattt ataattttca atttgacgct agtgttgtag gaatagcttc taatggagat
      601 gatttagccc ttgtacttgc aaacaatact atagttcttg caaatcgttc tttgggtatt
      661 aaatttagtc aaaccctaac ctcagctcca gctcaagaca gtcgtaccgc taatcctata
      721 tttttagaca atatcatcgt atatccaacg ctagatggca aaattttaat tctttcaaga
      781 aacaatcttc aagtcattaa agatgtggtt atttcagcag aaaatttttt caacaatgta
      841 atccatctaa gtgtaatcgg agataaactt atagcagcaa cagctaaaaa aatcattgtt
      901 gtaagccctg ctagaactct ttatcttgac gctgacataa aagatgttgc acttagtgat
      961 gatggtattt ttatactaga aaaagatggc actattatta aaactgatta taacttaaga
     1021 aaaattgcag aaaaaaaatt tgaatttgct atttttgtaa aaagcaatat atacaataat
     1081 tatttatata tttttgaaaa aacaggctat cttatcaaaa tgaatctaaa tttagataat
     1141 acacaagtat ttaaactttc agaagctgtt gataaaattt ctttcatggg gaatggtaaa
     1201 ttttactacg gagataaaat tttagatttg ctatgataaa aattttagaa caaacaataa
     1261 agtctttaaa attaaattta aagccctatg acttaagtat gttgactaga aaaaaaagtt
     1321 atatttgtgc taaagatcaa aataacattc tttttatgta tacaggaaaa acaaaatttt
     1381 taatgaaaga tgccttattt ttagaaaatc tagcacagca aattaacata aataacaaat
     1441 atttttttag tatggcttct ctttgctcta aagcaaaaaa tcatctagaa atgaaaggat
     1501 ttaatatcta tgttgctctg tgatattggg aattcaaatg ctaatttcct agatgataac
     1561 aaatatttta ctcttagtat agatcagttt ttagaattta aaaatgaaca aaaaattttt
     1621 tatatcaatg tcaatgaaca tctcaaagaa catttaaaaa atcaaaaaaa atttatcaat
     1681 cttgaacctt attttttatt tgatacaatt tatc
//
LOCUS       DARGEM010000185         1683 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.185, whole genome shotgun sequence.
ACCESSION   DARGEM010000185 DARGEM010000000
VERSION     DARGEM010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.185"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..981)
                     /gene="waaA"
                     /locus_tag="SFZ78_001753"
     CDS             complement(<1..981)
                     /gene="waaA"
                     /locus_tag="SFZ78_001753"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEG8212578.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWFNPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKAILEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFDNVLISGKFI"
     gene            complement(978..1670)
                     /locus_tag="SFZ78_001754"
     CDS             complement(978..1670)
                     /locus_tag="SFZ78_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG8212579.1"
                     /translation="MLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINADLEKIDEE
                     IKDIENQKIQNNAHISEFSAKIKDLSKKSGAVKTEKEANALKIEEDIAKEQLDAANDE
                     IVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSVYDKKTKLV
                     SEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGEEIVTCPHC
                     GRILYKEQEEQN"
BASE COUNT          571 a          279 c          177 g          656 t
ORIGIN      
        1 aataaatttc ccgctgatta atacattatc aaaatatgcc gcttctatag gattgtgtcc
       61 tcctatgcct tctatgaaag aacctccaag cacaacaaca tcagaaattg cataaaaatt
      121 tacaagctcc cctaaagcat ctaaaagcaa aattttttta gaaaatttct tattttcatc
      181 ttttaaagaa ctaaattttt caaattctaa acctttgttt aaaagcaaat tttcaacttc
      241 tttaaaacgt tcagggtgtc gtggggcgat aatgagtttt tcattttctt ctagtttaaa
      301 atgatcaagc aaaagctctt cttcatcctt atgagtactg gcaaaaatga taagtttttc
      361 cttaggtttg gtataaattt tattattttt aatttctaaa attgccttaa tatttttaaa
      421 aattttaaca tttttagctc ccaaactttc aagtcttact ttatctaatt cactttgagc
      481 aaaaacttca tcaatataag aaaaaatttt tttataaaaa aaagaaaatc tttgataaga
      541 atgataagat ttatcagata ttctcgcatt aagcaaaata atcttagcct tataaatacg
      601 tgccataaaa acaagcataa gccaatattc tgcttcaaaa attaccaaaa ccttacaagg
      661 attaaaccaa aaaggcaaaa aattttcaaa agcaagataa tttacctttt tacaaaattc
      721 ttttgcacat tcaaaacctg tttgagtaat agtagttatt cttgaatcaa atttcaaaac
      781 caaagcttta atacttctta cctccccgta agaacaagca tgaaaatgta catcagcttt
      841 ttcttgatgt aaatttttat aaagaaaaaa tcgagatttt aaactaattt tgtatttgga
      901 ttttaaaaaa gaaagcaaaa gaataaagac ggcacaaaat aaaaatgccg tccaagttaa
      961 aaaataataa aaaaagatca attttgttct tcttgctctt tataaagaat tcttccgcaa
     1021 tgaggacaag ttacaatctc ttcacctttt acaacggaca gataagtctt atcgtaaatt
     1081 ttcataaaac atccatagca tgcttgtttt ttaacaggaa ctacagcagt attcttcgcc
     1141 catttgcgaa ttttctcata aaaacttaaa actttttgat tcatctcact cacaagttta
     1201 gtttttttat cataaacact cattctatct ttttcaagaa cttccatttc agatttaatg
     1261 cttactctaa tctcgttaat attttgctct tgtttgattt tttcttcttc aagttctttt
     1321 ttataagttt ctttattctc taaaatttta tctagtctta caatctcatc atttgcagcg
     1381 tctaattgtt cttttgcaat atcttcttca atttttaaag cattagcttc tttttctgtt
     1441 tttaccgcac cacttttttt agaaagatct ttaatttttg ctgaaaactc ggaaatatga
     1501 gcattatttt gtattttttg attttctata tctttgattt cttcatcgat tttttctaaa
     1561 tctgcgttga ttttttctat ttttaactca gcatctttta aagtcttatt aatactgtct
     1621 atttttggtt cataactatc aatttcttga tctatttttg ataaaagcac taattgttcg
     1681 aga
//
LOCUS       DARGEM010000186         1609 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.186, whole genome shotgun sequence.
ACCESSION   DARGEM010000186 DARGEM010000000
VERSION     DARGEM010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.186"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            141..859
                     /locus_tag="SFZ78_001755"
                     /pseudo
     CDS             141..859
                     /locus_tag="SFZ78_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            789..>1609
                     /locus_tag="SFZ78_001756"
     CDS             789..>1609
                     /locus_tag="SFZ78_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212580.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISNNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANN"
BASE COUNT          607 a          206 c          249 g          547 t
ORIGIN      
        1 aattttcatt aaatttaaat attgaaaaat aaaatatcaa attaatattt tattttataa
       61 tcaactcagg acatacggga tagtgttgca aataatcaat ttgcgataaa tcaaaaggat
      121 ttattttagt gagaaatgag atgaaaaaat attttaatat ttttaaaaat ttttacaaat
      181 aagacaaatg caaaatttgg attgggcgtt tgtagtgtgg ttttatcttc ttcggtttgt
      241 tttgcggcgg ttcaggctac aagcaaggat ggaaaaattt ttatatttct gaacattctt
      301 ttaaggataa tcaagtttat gatcctcaag cagaaatttt taaaaaaatt aatggaaaaa
      361 atttctatac ttctaagtca aaatacccta tatcaaattt aactatgatt tataataacc
      421 ctaaatctgg aaataaaaat ttatccaagc ttgaaatttt aactccggat acttcaaaag
      481 aagagatcat aacagctttt agcactttag gaaccgtatc ttcagatact caagctgttc
      541 ctagttcttt tatacctttt attgtaacag cttatgctca aaatacaaat gcaacaaata
      601 ataaacttat attagaaaat ggagaattat cttctgtgta tttttgcaaa ccaagcatag
      661 gggattgtgg agtacctaat aattctcaaa aaggcgatcg ttttaagtat ttaattactg
      721 cggcgtttac tgacagggag ggggatttaa caatcaaacc attttaaaag aaaactccta
      781 tatcaataat gggtgtagaa aatatctaca ccttgccctt aaatggagct ccttatattt
      841 caggatctgt agcttttgat ggtgaagcta aagacaataa attaatctta gagtcaaata
      901 caaaaattga ccttcataat tcccagtatt tttcagatga agaaggtaag gatatttatg
      961 atgaaagaat tactcgttta atgggagctt ttggcataaa ttctaattta caaaacaata
     1021 aagttcttat cgattcagcc aatatcgtcc ttcatgggcc agatggtgag tatacagctc
     1081 gttcgacctt tgaaatttta ggtgctttag ctgatgtaaa taatcttaaa aaatacaatg
     1141 taagtaaaaa ttccgtaata attaaaaatt taaatttaga tttaatggta aattcgcaaa
     1201 ataaaataac tttttatgat gctgttttat ttggagaaat ttacggtgga agaacattac
     1261 agggtaatgc agagaaaaat tctatagaag tttatcattt taactcatta gatcatcttg
     1321 ataaaaacat taaaacacat gcatcgttaa acctctatgg tgggtattct aacgatggtg
     1381 aagctaatgg aaataaaatt gtatttcgtc ttaaaaaacc tttaaaaatc agtaataatt
     1441 tttatggaaa aaattattac aatctttacg gaggttttgc tacggagggt gcgaatttta
     1501 atattattga tatacaaaat gatttaacct atgaaaaagt tccacaaaat tattctgata
     1561 aatttactgt atatgcagct agaactttaa gtggaaaagc aaataataa
//
LOCUS       DARGEM010000187         1589 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.187, whole genome shotgun sequence.
ACCESSION   DARGEM010000187 DARGEM010000000
VERSION     DARGEM010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.187"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..243
                     /locus_tag="SFZ78_001757"
     CDS             <1..243
                     /locus_tag="SFZ78_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212581.1"
                     /translation="ESFEEDFIDKGLEQKEYLKVDESMSKFFQEQFESIVKDCKDFNE
                     ALNKLKENFSSLEQSEFEKHLFIALNNSGILGYLED"
     gene            245..1483
                     /locus_tag="SFZ78_001758"
     CDS             245..1483
                     /locus_tag="SFZ78_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212582.1"
                     /translation="MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTI
                     AKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKK
                     THFNSARLKKIFEENSRKAKAKAIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDGIVL
                     HKDDPFWDSHYPHVTMHDYGCRCYVLEVGESEVKGLKIPPSNAKESEFNGFNDEELLD
                     ELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFTHQKELYTWQKSLDDMVDEVIIKDN
                     QKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSA
                     DEIKQIVKVLDEAKEVYWDNANNSLLYFFEDKKDASRINKIVITPDYKLKKFGKTNAI
                     VTLGKVEAINKDNKTYIKIR"
BASE COUNT          647 a          201 c          279 g          462 t
ORIGIN      
        1 gagagctttg aagaagattt tattgacaaa ggattagaac aaaaagaata cttaaaagtc
       61 gatgagagca tgtcaaagtt ttttcaagag caatttgaaa gcattgtaaa agattgtaaa
      121 gattttaacg aggcactcaa taaacttaaa gaaaattttt ctagtttaga gcaaagcgag
      181 tttgaaaaac atctttttat agctttaaat aattccggta ttttaggata cttggaggat
      241 taaaatgaca ggtgcaaaaa taggattttt ttcagaacct actaaagctg ttgatttttt
      301 aaaaaataaa aagccagagc ttagttttga ttatgatgaa ctttcatatt caacccataa
      361 aaaagtcttt actattgcta agcttatgga tgaaagcttg ttaaaagata tgcaagatac
      421 tttagtaaat gctattaaaa atggggataa atttagcact tggagtaaga ttgcagagga
      481 gaaattaaaa gctaaaggtt ggtggggttc aaaggaagtt ataaacccta aaacaggtga
      541 agttaaaaaa actcatttta atagtgcaag attaaaaaaa atctttgagg aaaactcaag
      601 aaaagctaaa gctaaagcta tctatgaaaa tcaaatgaaa agcactaaac cttattttaa
      661 atactgcacc caaaaagatt ctttggttag ggacaaacac agagcctttg atggcatagt
      721 tttacataaa gatgatcctt tttgggatag tcattatccg catgtaacta tgcatgatta
      781 tggttgcagg tgttatgttt tagaagtagg tgaaagtgaa gttaaaggcc taaaaatacc
      841 accatcaaat gccaaagaaa gcgaatttaa tggctttaat gatgaagagc ttttagatga
      901 gctttataaa caaaaaaaca ctgaagtcat tcaaaacttt ataaagcttg atatgttaag
      961 tgcagcggct aaaaaaacaa aagaagttaa aagcttcact catcaaaaag aactgtacac
     1021 ttggcaaaaa agcttagatg atatggtgga tgaagtcatc attaaagata atcaaaaata
     1081 tcctatcaat ttcatacaag taggtaaaat ggataaaagc accaaagagt ttttagaaaa
     1141 acttaataaa aaagacttag aagacttata ctttacactg agcaaaaaca atcttttaca
     1201 cgcaagtcct aaaagaaagg caagttataa tcaggcttta agcgcggatg aaatcaagca
     1261 aattgttaaa gttttagatg aagcaaaaga agtttattgg gataatgcaa ataattcttt
     1321 attgtatttc tttgaagata aaaaagatgc tagtcgtatc aataaaattg taattacccc
     1381 tgattataag ctaaagaagt ttggtaaaac caatgcaata gttacattag gaaaagtaga
     1441 agcgattaat aaagataata agacatatat taagatcaga taaggcggtg agacttgcac
     1501 tcacaataca taccccaatt aatttggact atcctactac tacattttag gtatcaacct
     1561 tatctaatta agataatttt agcttgatg
//
LOCUS       DARGEM010000188         1527 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.188, whole genome shotgun sequence.
ACCESSION   DARGEM010000188 DARGEM010000000
VERSION     DARGEM010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.188"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..948)
                     /locus_tag="SFZ78_001759"
     CDS             complement(<1..948)
                     /locus_tag="SFZ78_001759"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212583.1"
                     /translation="MFYKKNDLIDITNYLAMKSFGLKYFASEQTSQLLIYSKKKYCLR
                     YLVLERVDFDIKKLIVLISINSIEWKKIEYKYYIDKDLKIIIEINIPIYFKYIKLNYK
                     DNFYITRSNMKILVTKFLGLIVSNRPDGFASRIWAFLNAMYIAKKTGFKFGFVWPRFD
                     DVGGMISKKYITIDSEENIFDKNFIQNHSYTCSRLPQTHSYDNCLGPLSLKNIQKLPF
                     YEDYGHLVTCCIPLYELIFDIDIQEYQYKLRQIWNKLQFSYKYLNIKNIVENIYHKLN
                     NHFVAIHIRGGDIVNGEHRLFIMSSLWTYLYPLELVTQLI"
     gene            complement(952..1440)
                     /locus_tag="SFZ78_001760"
     CDS             complement(952..1440)
                     /locus_tag="SFZ78_001760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212584.1"
                     /translation="MINYVGIWLNYHYGEFVRMYKMYKNYQKYFNDLEVDTQCFFSCY
                     QKKDLISNSAVLIVKNHLSYKLGKILLECKNLKDFVEIPIIIKYFLWESKNEKAYFKS
                     FLFEIEKLDDYNQSCSIRNYLSYQLGKLIIESFKGWYKGYLLLLPYRAFILYRKIKKD
                     KR"
BASE COUNT          585 a          215 c          137 g          590 t
ORIGIN      
        1 aatcaattgt gttaccaact ccaaaggata taaataagtc cataagctac tcattatgaa
       61 caatctatgt tctccattaa caatatctcc acctcttata tgtatagcca caaaatgatt
      121 attcaattta tgataaatat tctcaacaat attttttata tttaaatact tgtaggaaaa
      181 ttgtaattta ttccaaattt gtcgtagttt atattgatat tcttgtatat caatatcaaa
      241 aattaattca taaagcggaa tacaacatgt aaccaaatga ccataatctt cataaaaagg
      301 taatttttga atatttttta aagacaaggg gcctaaacag ttatcataac tatgagtttg
      361 tggcaaacga ctacaagtat aagagtgatt ttgaataaaa tttttatcaa atatattttc
      421 ctcagaatca atagttatat attttttaga aatcatgcca ccaacatcat caaatcttgg
      481 ccatacaaaa ccgaatttaa atccagtttt ttttgcaata tacatagcat ttaaaaaagc
      541 ccatattctt gaagcaaatc catctggtct gttggataca atcaagccta aaaattttgt
      601 tactagaatt ttcatattag atcttgtaat gtaaaaatta tctttataat tcaatttaat
      661 atatttaaaa tatattggga tatttatttc aataataatt tttaaatctt tatcaatata
      721 atatttatac tctatttttt tccattctat ggaatttata gaaatcaaaa caataagctt
      781 cttaatatca aaatcaaccc tttctaacac aagatatctt aaacagtatt tctttttaga
      841 ataaattaat aattgtgaag tttgttcgct tgcaaaatat tttaatccaa aagacttcat
      901 ggctaaataa tttgttatat caattaaatc atttttttta taaaacatct tttatctttt
      961 atcttttttt attttcctat aaagaataaa agctctatag ggcaacaata ataaataacc
     1021 tttataccaa cctttaaaac tttcaataat taactttcca agttgataag acaaataatt
     1081 tctaatgcta caactttgat tataatcatc caatttttct atctcaaata agaacgattt
     1141 gaaatatgct ttttcatttt tagattccca aagaaaatat tttataataa ttggaatttc
     1201 aacaaaatct tttaaatttt tacattccaa tagaatttta cccaacttgt aacttaaatg
     1261 attttttaca attaatacgg cactatttga tataagatct tttttttgat agcaagaaaa
     1321 aaaacattgt gtatcaactt ctaaatcatt aaaatatttt tgataatttt tatacatctt
     1381 atacattcta acaaattctc cataatgata atttaaccat atgccaacat aatttatcat
     1441 gggatatatc tttgtggatc gaaaagaaat aaaacaatcc tcttgttctt tataaattct
     1501 catagattta gagataataa aagtttg
//
LOCUS       DARGEM010000189         1522 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.189, whole genome shotgun sequence.
ACCESSION   DARGEM010000189 DARGEM010000000
VERSION     DARGEM010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.189"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1517
                     /locus_tag="SFZ78_001761"
     CDS             <1..1517
                     /locus_tag="SFZ78_001761"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212585.1"
                     /translation="VLIGASNSMLFNGLRAGLNQDNVELTNLSLGGASIIFSLYCTLR
                     EKNKDIVNKADLVILESNIIDMIHGIDLYGKIHLILRNIFLTYNELSKLNKKFLVLLL
                     PLLEKHSDYNVVETINNAHRMCCNQYGFNCVDVQSVYLKNNVMDFYMTMMPDARHQLQ
                     RIMYEFGKNIANENFSLFKFSLPSSIDLDFKICSPKNDFKIENKMKEFIVSDLFHNEY
                     CYRITEIDKYLFPTFLIGYKILATHSWTHGKKGLKTWKQYENTLSSIMIRNNQGKFIC
                     GTSSHYNSFTCIYDNILIDNHTIISLSDVNNHVDYYDLVNLMLYKDEGKIQVAVDDIK
                     ETVIKQEYNFSHLFPDVVFIKEILEEYLNSTSNISIQISSLTQQLNHFKTFSTAKQRI
                     QNQLPYRLGQAMIINSKNFLGYIFLPYILLSIVILYKQEQKNYKHKIKLNPESTLPPL
                     ETYPDYNEALKEKRCFTYKLGLALIEANKKWYGGGYIKLWFKIKKLKYEFKTKN"
BASE COUNT          587 a          165 c          212 g          558 t
ORIGIN      
        1 ttgtactgat tggtgctagt aactcaatgc tttttaatgg attgagggct ggattaaatc
       61 aagataatgt tgaattaacg aatttatctt tgggtggagc atctataata ttttctttat
      121 attgcacctt aagagaaaaa aacaaagata tagtaaataa ggcagattta gttattttgg
      181 aatcaaatat tatagatatg atacatggta tagatctcta tggaaaaatt cacttaatac
      241 tcagaaatat ttttttaaca tacaatgaat tatctaaatt aaataaaaaa tttttagttt
      301 tattgcttcc acttttagaa aaacatagtg attataatgt agttgaaact attaacaatg
      361 cccatagaat gtgttgcaac caatatggat ttaattgtgt tgatgttcaa tcggtttatt
      421 tgaagaataa tgttatggat ttttatatga ccatgatgcc tgatgctaga catcaattac
      481 aaagaattat gtatgaattt ggtaaaaata tagcaaatga aaatttttct ttatttaaat
      541 tttctcttcc ttcatccata gatttagatt ttaaaatttg ttctcctaaa aatgatttta
      601 aaatagaaaa taagatgaaa gaatttattg tatctgattt atttcataat gagtattgtt
      661 atagaattac agaaatagat aaatatcttt ttcctacttt tttaataggt tataagatat
      721 tggctactca ttcttggact catggaaaaa aaggtttaaa aacatggaaa caatatgaaa
      781 ataccttatc tagtataatg atacggaata atcaagggaa atttatttgt ggcacatctt
      841 cacattataa tagttttact tgtatttatg ataatatatt aattgataac catacaataa
      901 tttctttgag tgatgtaaat aaccatgttg attattacga cttggttaac ttaatgcttt
      961 ataaagatga gggaaaaata caagtagctg tagatgatat taaggaaaca gtaattaagc
     1021 aagaatataa tttttctcat ttatttccag atgtggtttt tattaaggaa attttggagg
     1081 aatatttaaa ttctacatct aatatttcga ttcagatttc ctcactaact caacaactca
     1141 atcattttaa aactttttca acagctaaac aaaggattca aaaccaactt ccatatagat
     1201 taggccaagc aatgataata aattctaaaa attttttagg ttatatattt ttaccgtata
     1261 ttttattaag tattgttata ctatataaac aagagcaaaa aaattataaa cataaaatta
     1321 aattaaaccc agaatcaacc ttacctccat tagaaactta tcctgattat aatgaagctt
     1381 taaaagaaaa aagatgcttc acttataaat taggacttgc tttaattgaa gctaataaaa
     1441 aatggtatgg gggggggtat atcaaattgt ggtttaagat taaaaaatta aaatatgaat
     1501 ttaaaactaa gaattaggtt tt
//
LOCUS       DARGEM010000190         1518 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.190, whole genome shotgun sequence.
ACCESSION   DARGEM010000190 DARGEM010000000
VERSION     DARGEM010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.190"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            53..685
                     /locus_tag="SFZ78_001762"
     CDS             53..685
                     /locus_tag="SFZ78_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8212586.1"
                     /translation="MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKK
                     YFDNISKLSKRFYIDKEENALNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYET
                     GEMLELSKAFFKTTPKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQGDGLYILNFDN
                     QLMVKLLQLDPISKVLDIISVNKDYKSYSLDLKDSQVEIIIQGKVLRSII"
     gene            827..>1518
                     /locus_tag="SFZ78_001763"
     CDS             827..>1518
                     /locus_tag="SFZ78_001763"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212587.1"
                     /translation="MQKIDEAHKQRIQKIDEVHKQRMQKINENFEKEKERKKDLKFNK
                     FQTTSHEIFTIKTPENEDVEVELACTAGLIQTSQIDYGEFVKKEFLYKCFPVTWNDFL
                     KLNKYEKILAYTVKDCNDIGLLKEVYEQMFKYLKWQSELPEYLKKDIRSRKRYLHEFS
                     NPVQIKSKLSLKAYRYYINFFLNEIPEGSYFPMQIMHRGDELSEALYNTYFLKDDESI
                     DMYYPPNFYGDTS"
BASE COUNT          644 a          164 c          241 g          469 t
ORIGIN      
        1 tacattagtc aataaaatat gttaaatatt ttacttttta taaaggtaat atatgaccgc
       61 aaatgatttt aaacaaataa gagaaaaatt aggacttaca caggaacaat taggtaataa
      121 gcttaattta acaagacagc aaattattaa tatagaaaaa ggcaaaacac ctattagcaa
      181 aaaatatttt gataatataa gcaagttaag taaaagattt tacattgata aagaggaaaa
      241 tgcactaaat aaagatagaa ataaacaaga aattaatttt tattctatac caaaacttaa
      301 tatttcagcc tctgctggtg gaggtaatga gttgatagga ttagaggaat acgaaacagg
      361 tgaaatgctt gaacttagta aagccttttt taaaacaact ccaaaaaatg taaaagctat
      421 caaagttgat ggatactcta tgattccaat gcttttacct gatagttggg ttatatttga
      481 agaaatacac gagtatcaag gagatggact atacatttta aactttgata atcaacttat
      541 ggttaaactt ttgcaattag atccaataag taaagtttta gatattatta gtgtaaataa
      601 ggattataaa agctatagtt tggacttaaa agactcacaa gttgaaatca ttatacaggg
      661 taaggttttg cgttctatta tataatttaa aggaaataaa gtgaatatag tattatcgat
      721 attagcagtt atttttattt ttctcttatg taattattta tatagaaaaa taaaaggaat
      781 accaaataag ccggtaaaag aaatttggaa tgaatataag caggaaatgc aaaaaattga
      841 tgaagcacac aagcaaagaa ttcaaaaaat tgatgaagta cataaacaaa gaatgcaaaa
      901 aataaatgaa aattttgaaa aagaaaaaga gcgaaaaaag gacttgaaat ttaacaaatt
      961 tcaaacaact tcacatgaaa tttttaccat aaaaactcca gagaatgaag atgttgaggt
     1021 tgaattagct tgcacggctg gattaattca aactagccaa attgattatg gagagtttgt
     1081 taagaaagaa tttttataca aatgttttcc agtaacttgg aacgattttt taaagcttaa
     1141 caagtatgaa aaaatattgg catatacagt taaagattgt aatgatattg gattgttaaa
     1201 agaggtttat gagcaaatgt tcaaatattt aaaatggcaa agtgagcttc ctgaatatct
     1261 taaaaaagat atacgatcta gaaaaagata tttacacgaa ttttcaaatc ccgttcaaat
     1321 aaaaagcaaa ttaagcttaa aggcttatcg ctactatatc aacttctttt taaatgaaat
     1381 accagaagga agctattttc ctatgcaaat aatgcatagg ggtgatgagt tgagcgaagc
     1441 tttatataat acttattttt taaaagatga tgaaagtata gatatgtatt atccaccaaa
     1501 tttttatgga gacacatc
//
LOCUS       DARGEM010000191         1492 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.191, whole genome shotgun sequence.
ACCESSION   DARGEM010000191 DARGEM010000000
VERSION     DARGEM010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.191"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1436
                     /locus_tag="SFZ78_001764"
     CDS             <1..1436
                     /locus_tag="SFZ78_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212588.1"
                     /translation="FTYEIIQKSVKIFNLFIHNDFYQQFYSTQIQNINTQLIEMIRFI
                     VLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQEFLKERRAKVENAIIVSTGPSLIKQL
                     PLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERDDIVSKCFDNDFGDFNKGILF
                     ILASVVHKEVLDFLEKDQRAYMLVHRPLNFAASLKLDEYGYLGVGHSVSNMIYELAGA
                     LRFENIIFIGQDLAYGEDGSSHPKEHIHGSQGEEIRGEKYTLAYGGKGKVRTQLTWNL
                     FRQAFEKDIFWAKEKLNIITYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFDFPK
                     FLDKKLAKEKLEKTKKYLQKSILESKEFIKKTQTQLQKLRYTLEKNDKNFQTLEKIKN
                     DLLNLFKEFKKLKLFNELCQAIYFHNECEILKFEVLNTNKQKENLIDFLKIQHNWFIQ
                     GLGYLDTQNKTIEKSLENWNFDDIAKK"
BASE COUNT          599 a          207 c          214 g          472 t
ORIGIN      
        1 tttttactta tgaaatcatt caaaaaagtg taaaaatttt taatcttttt atccataatg
       61 atttttatca acaattttat agcactcaaa tacaaaatat aaatactcaa ctgatagaaa
      121 tgatacgatt tatcgtttta aacaaaggta atgatccaca tgattcttta gttggaatca
      181 aacataccct agataatctc cctaaaatgt taaatcatgg aatttttcaa gaatttctca
      241 aagaaagaag agctaaggtt gaaaatgcta tcattgtttc tacaggacca agtcttataa
      301 aacaacttcc tttgttaaaa aaatatgcta ataaagctac aattttttgt gcggattctt
      361 cttatcctat tttagctaaa catggtataa agcctgatta tgtttgcatg ctagaacgtg
      421 atgatatagt ttctaaatgt tttgataatg attttggcga ttttaacaaa ggcatacttt
      481 tcatacttgc ttctgtggtt cacaaagaag tattagattt tttagaaaaa gatcaaagag
      541 cttatatgct tgtacatcgc cctttaaatt ttgcagctag tttaaaactt gatgaatatg
      601 gatatcttgg agtaggacac agtgtttcca atatgatcta tgaactagca ggagctttaa
      661 gatttgaaaa tatcattttt ataggacagg atttagctta tggcgaggat ggaagttcac
      721 atcctaaaga gcatatacat ggaagtcaag gtgaagaaat cagaggagaa aaatatacac
      781 tagcttatgg aggaaaaggc aaagtaagaa cacaacttac ttggaatttg tttcgtcaag
      841 cttttgaaaa agatattttt tgggcaaaag aaaaactcaa tatcatcacc tacaactgta
      901 ccgaaggtgg agcaaggata gaaggaacca tagaaaaacc ttttctatgg gcttgtgaga
      961 atttacttga taaagattta aataaacctt ttgattttcc aaaatttcta gataaaaaac
     1021 tagccaaaga aaaattagaa aaaacaaaaa aatatctcca aaaaagcatt ttagaatcca
     1081 aagaatttat aaaaaaaacc caaactcagc ttcaaaagct tagatacact ttagaaaaaa
     1141 atgacaagaa ttttcaaact cttgaaaaaa tcaaaaatga tcttttaaat ctttttaaag
     1201 aatttaaaaa actcaagctt tttaatgaac tttgtcaagc tatttatttt cataacgaat
     1261 gtgaaatttt aaaatttgaa gttttaaaca caaataagca aaaagaaaat ttaatagact
     1321 ttttgaaaat acaacacaat tggtttatcc aaggtttagg atatcttgat actcaaaaca
     1381 aaaccataga aaaaagttta gaaaattgga attttgacga tatagctaaa aaataattag
     1441 gatttccaat gaccttcacc cctacccaaa aagaactctt taacaaaaat at
//
LOCUS       DARGEM010000192         1482 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.192, whole genome shotgun sequence.
ACCESSION   DARGEM010000192 DARGEM010000000
VERSION     DARGEM010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.192"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..990)
                     /locus_tag="SFZ78_001765"
     CDS             complement(<1..990)
                     /locus_tag="SFZ78_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212589.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CRDKSKYILHRYYQKNDLAEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPY
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQ"
     gene            complement(987..1319)
                     /locus_tag="SFZ78_001766"
     CDS             complement(987..1319)
                     /locus_tag="SFZ78_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212590.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVALPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
BASE COUNT          518 a          210 c          149 g          605 t
ORIGIN      
        1 ttgtatgttt tcttcttctg tgttttttgg aattttgttg taattaataa gataataatt
       61 aagtctatct ttgtttaatt cttgattgtc aagttcattt aaaaactctt tagaataata
      121 atttaaaaag taagtatttg cgtattcttc tatatattct ttaaaacttc ttttatgaat
      181 taatttatct tgattaatgg gataagattt taaagtatta tttttagaat ctaaagtatg
      241 atcatatcct acaaaaaaat aagaaaaatc cataaaagca taatcagcac tgatgccttt
      301 acaaagattt aaaaacatat tttcaagttc taaaatgatt ttatcttctt tgcttaaatt
      361 taattctttt tgtatctcat cttgactttt tggagtaaaa gtatgattga ttctgtgatt
      421 ataattgtta attaaatatt ctaagctttc atcactaaaa ttaaagctta gctcaagtga
      481 agaattaaaa taaatatcat atttattaaa gtagggtgct aaattatctt tttctataaa
      541 aatatcaatt tgattttgag aaaaattttc tcctttttca tcccaaaaag gaaaattagg
      601 agaaagattt ttaagcatac caatctctgc caaatcattt ttttgataat atcgatgtaa
      661 aatatattta cttttatctc tacataaacg attataaaat tgagtataat ttgaaggcaa
      721 aaaatcaagc cattcatcat caccatgtag atttatgcct tcaaattgat caacactaaa
      781 ataagcttta aactcttgca tagcttttaa ggtattttct aaatgcttat tataaaattt
      841 gtctttattg gcttgtttaa attcaaacca atctttggca tttaaacgct cgccttttaa
      901 gctccaagca ttaagatatt tttcatcact aaaagtttta gtagaaaaaa gataaaagct
      961 tactcgatta gagcttaatg tttgtttcat ttaaaatctt ttaaagcata taaaaagtct
     1021 ttaatatcac ttacttgatc ttctacccaa tcttctactg tataatcttc atcacaatcg
     1081 ctatcttcat tataataatc tcccccttca aagtcagcag gatcgtcata aagttccatt
     1141 tctatatgtt ctaattcaaa ttccaaatca tttataaaat ttcgaagatt tacgccatta
     1201 aattcacttt tatcatattc taaaacagca ataagattag gcggcaaggc aactttatat
     1261 tttgcatcaa cttttaaatt gccattttct actaaatttt tatattcata gcttaaaatg
     1321 ctacttataa aagctcttcg ttcgtatttt tttaaaccat ataaagcatc ttttaaataa
     1381 ttgtcatttt taagatagta tttaaacact tcttgtatat attcatcatc caataatttt
     1441 ttatttttca ttatctttcc ttataattta ttttagcaaa gt
//
LOCUS       DARGEM010000193         1479 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.193, whole genome shotgun sequence.
ACCESSION   DARGEM010000193 DARGEM010000000
VERSION     DARGEM010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1479
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.193"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1479
                     /locus_tag="SFZ78_001767"
     CDS             <1..>1479
                     /locus_tag="SFZ78_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212591.1"
                     /translation="NDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIW
                     IMFHILDFSNELQNSRLMVLENDKLQTQDYTELCSFKPFFQFSRIYFLELMSHYYERF
                     HEDVLELNKKLAETFKNIILRNGNDPLDALQGIEQFVYNLPSMITHPSYKELLSKRKG
                     ISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEI
                     TAEFFNHDFGEFDKDIVFVCAGVVHPKAIEYLKGRNLVITQKVLAFPYYINLKDFSYA
                     AVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSASYESQMYEHILT
                     KAYGEKEEVKTHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGARIEGTIEKPFLWA
                     CENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFEKIQS
                     VYLSLNEKEEYLNLAIEKIDEFKNKLEDIKQMQDLYEILQPLR"
BASE COUNT          545 a          178 c          226 g          530 t
ORIGIN      
        1 caacgacaaa tacctacttt atcctgtatt gtatttttat ggttttggaa atggagtttt
       61 atttaaagct ttattacaaa ataaaaatca tcagcatatt gttgtttttg aaaaagatat
      121 agaaatcatt tggatcatgt ttcatatctt agatttttca aatgaattgc aaaattcaag
      181 attgatggtt ttggaaaatg ataaattaca aactcaagat tatactgaac tttgttcttt
      241 taaacctttc tttcaatttt ctagaattta ttttttagaa ctgatgagtc attattatga
      301 aagatttcat gaagatgttt tggagttaaa taagaaatta gcagaaactt ttaaaaatat
      361 cattttaaga aatggtaatg atcctcttga tgctcttcaa ggtatagagc aatttgtcta
      421 taatcttcct tcaatgatca ctcatcctag ttataaagaa ttactttcta aaagaaaggg
      481 tataagtgat acagctatta ttgtttctac aggaccatct cttactaaac aacttccttt
      541 attaaaaaaa tatgctaata aagctacaat tttttgtgca gattcttctt atcctatttt
      601 agctaaacat ggtataaagc ctgattatgt ttgtatgcta gaaagaactg aaattactgc
      661 tgagtttttt aatcatgatt ttggggaatt tgataaggat attgtgtttg tttgcgcagg
      721 ggttgttcat ccaaaggcga ttgagtattt aaagggtaga aatttagtca taactcaaaa
      781 agttcttgct tttccatatt atataaatct taaagatttt tcttatgctg ccgtaggatt
      841 tagcgttgca catacattat cttatctagc aacttatcta agtcataaaa acatcatttt
      901 tataggacag gatttagctt atgctgaaaa tggcaattct catcctgatg attatcaaaa
      961 ttcagctagc tatgaaagtc aaatgtatga gcacatttta accaaagctt atggcgagaa
     1021 agaagaagtt aaaactcata gtatatggct tttatttaaa aattggtttg aaaatgaaat
     1081 gattccaaat actagaaaaa tgggtatcac cacctataac tgtaccgaag gtggagcaag
     1141 gatagaagga accatagaaa aacctttttt atgggcttgt gagaatttac ttgataaaga
     1201 tttaaataaa ccttttgaaa aattagaacc tttaagttta aataaacaaa atgaattttt
     1261 acttaaggct tattataaag tttatcaaag tattaaacat tgtagagatt ttagtaaaat
     1321 actcagcaat gattttgaaa aaatacaaag tgtatatttg agtttaaatg aaaaagaaga
     1381 atatttaaat ttagctattg aaaaaataga tgagtttaaa aataaacttg aagatataaa
     1441 acaaatgcaa gatttatatg aaattttaca acctctgcg
//
LOCUS       DARGEM010000194         1470 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.194, whole genome shotgun sequence.
ACCESSION   DARGEM010000194 DARGEM010000000
VERSION     DARGEM010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.194"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            108..428
                     /locus_tag="SFZ78_001768"
     CDS             108..428
                     /locus_tag="SFZ78_001768"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212592.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKRFEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            438..632
                     /locus_tag="SFZ78_001769"
     CDS             438..632
                     /locus_tag="SFZ78_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212593.1"
                     /translation="MKYPNVYVKLVGEDGNVFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
     gene            712..999
                     /locus_tag="SFZ78_001770"
     CDS             712..999
                     /locus_tag="SFZ78_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212594.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK"
     gene            complement(1027..>1470)
                     /locus_tag="SFZ78_001771"
     CDS             complement(1027..>1470)
                     /locus_tag="SFZ78_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8212595.1"
                     /translation="FYFYLISTSFGSSMGQFAMSKQRAPKRLCRDFSLHTKRLKNASI
                     ENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLLKNIKGKFM
                     LSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF"
BASE COUNT          594 a          180 c          217 g          479 t
ORIGIN      
        1 gtaattggag aactttctaa gatgtaacag tacacaataa gctaagtcaa gctaatctca
       61 cagagagtgt aaaacacaag gttgttctat caaaaaagga gataaacatg aaagatatca
      121 aaaattacac cgataaagaa ttaaaagaaa aaatcataca agatttagag agtgaattta
      181 ggattttgta caaaaagctt ttaaaagaaa aagattatct tgctagagat aatatattag
      241 agcttatgac tatttataat atgggcataa actcttattc aatcgctaaa agatttgaga
      301 tgaatgaaga taaaagtctt atacaagttc ctttgtttga aagatatatt ataggtagaa
      361 aatttgtagt taaatataat gatgaaaaac aaagatacga attaaaaagt accttttgtg
      421 aattttaagg agaaaagatg aaatacccta atgtttatgt gaaattagta ggagaagatg
      481 gcaatgtttt tagtatttta gcaagagtaa gcaaggcttt aaaaaaagca ggtgtaagca
      541 aagaagaaat aagtaaattt caaaaagaag ccatgagtag tgattataat catttattaa
      601 atgtggtgca agattgggtt aatacaaatt gatttcaaaa agatgtcaaa caacagcaca
      661 cattcagcca agcgaagcta atcttgtctt atcaaaacaa aaggagataa gatgagtaaa
      721 gtaatagtag atatcaaaaa aggttttagc aagactttta taaacgcaat ttgcaaccat
      781 aacaatgaac ttgttttaga atatcttaaa aatggtatga gtgcaactaa agaatgcatg
      841 ggcgaagaac ctatgtttta tgcaataact cataataatt ttggagcgat tttgctttta
      901 ttaaaatacg gtgctatttt agataaagag tatctagaag aaagcaataa agattttagc
      961 aaagaagctc taaagttttt aagctcttta ctaaaataaa agagagtatt tttactctct
     1021 tagcttttaa aaattcataa tcaaaagctc tttactttct tttcttttta aaacattatt
     1081 atttaaagaa taccttactt ttaattcctt aatattaaaa tctttataaa gctctcttat
     1141 aagctcacaa tcattataag aaagcataaa tttacccttg atatttttaa gcaaattaca
     1201 taaaagttca tgttctttta gcccaaaacc tcctgtgttt ttataataat tctcagttcc
     1261 tacataaggt ggatctaaat aaaataaagc ttcattgtaa tcatattctt ttaaaatata
     1321 ttcaaagctt ttattttcaa tactggcatt tttaagtctt tttgtatgta agctaaaatc
     1381 cctacataat ctctttggtg ctctttgttt actcatagca aattgtccca tacttgaacc
     1441 aaaagaagta ctgataagat aaaaataaaa
//
LOCUS       DARGEM010000195         1469 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.195, whole genome shotgun sequence.
ACCESSION   DARGEM010000195 DARGEM010000000
VERSION     DARGEM010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.195"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..249)
                     /locus_tag="SFZ78_001772"
     CDS             complement(<1..249)
                     /locus_tag="SFZ78_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8212596.1"
                     /translation="MWVSSKEFAEKYNLNRDTIIKSANRAHKKSKKFCLLKFNILYFK
                     YSKGVGGHAGKTLQIWSKPLSKEEAKLVEQGFNIEDISN"
     gene            complement(250..441)
                     /locus_tag="SFZ78_001773"
     CDS             complement(250..441)
                     /locus_tag="SFZ78_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212597.1"
                     /translation="MKNKLVKTMSAKGVKLMTWAKAKGLNHKDMTILYDLSHGRIKGI
                     RGRAKELKEMLEKDGFKVA"
     gene            486..800
                     /locus_tag="SFZ78_001774"
     CDS             486..800
                     /locus_tag="SFZ78_001774"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212598.1"
                     /translation="MQANLKKILIEMQTQIHDLLLLAQEQHNSYNELTKKLNNDFLKI
                     TKELRNPLDKEQAAFATQALEKHFQECNSLTDEFSKQSQKAFDDRFKKILENYQKIKD
                     LS"
     gene            990..>1469
                     /locus_tag="SFZ78_001775"
     CDS             990..>1469
                     /locus_tag="SFZ78_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8212599.1"
                     /translation="MELSLRMKEYREYFGWTQTDLSEKSGVSISTIKKYEAGSVDNFT
                     YGNLKKIASAFNLSPASFISENMSDNSPTISNKICPTNVKNCPTSNVILENFTQTLND
                     DMINIPFFENVRASAGSGAYNDEESTQALGLSKSFLRECFGLYSFINLSVILGQGDSM
                     "
BASE COUNT          498 a          242 c          192 g          537 t
ORIGIN      
        1 attgcttata tcttctatgt taaaaccttg ctctactagc tttgcttctt ccttgcttaa
       61 aggtttagac cagatttgaa gggttttacc tgcatgacca ccaacacctt tggagtattt
      121 aaagtataat atattgaact ttaaaaggca aaatttttta ctttttttat gagctctatt
      181 agcggatttt attatagtat ctctatttaa attatatttt tctgcaaatt ctttactact
      241 tacccacatt caagccacct taaacccatc tttttctagc atttctttta attctttagc
      301 tctacccctt atacccttaa tcctaccatg agacaaatca taaagtatag tcatatcttt
      361 atgatttaag cccttagcct tagcccaagt cataagcttt acacctttag cactcatagt
      421 ttttacaagt ttatttttca tcttttttcc taaatatgtt ataatcaatc aaaaaaggag
      481 cttttatgca agcaaatctt aaaaaaattc ttatagaaat gcaaacacaa atccacgatt
      541 tattactttt agctcaagaa caacataata gctataatga gctcaccaaa aaactaaata
      601 acgattttct aaaaataaca aaagagctta gaaatccttt agataaagaa caagctgctt
      661 ttgcaacaca agcacttgaa aaacactttc aagagtgcaa ttctctaaca gatgaatttt
      721 caaaacaatc tcaaaaagct tttgatgatc gttttaaaaa aattttagaa aattatcaaa
      781 aaattaaaga tctttcctag gtttagtttt tatgcctata taacctgtca gtatgatagg
      841 tttttttaaa cacttgctct ttttaggttt attctttttc ttcatatttt tcctttaata
      901 ttatttttgc ttttttgtgt taccattacc gaaaaagtta tgtaattata gtataattta
      961 ttgaacttgt caagtatttg gagtaaaata tggaactttc tttaagaatg aaagaatata
     1021 gggagtactt tggttggacg caaactgatt tatctgagaa atctggcgta tcaataagca
     1081 caattaaaaa gtacgaagct ggatcagttg ataattttac ctatggcaat ttaaaaaaaa
     1141 ttgcttcagc ttttaatcta tctccagctt catttattag tgaaaatatg tccgacaata
     1201 gtccgacaat atctaacaaa atatgtccga caaacgtaaa aaattgtccg acaagcaatg
     1261 taattttaga aaattttact caaaccttaa acgatgatat gataaacatt cctttttttg
     1321 aaaatgtaag agcaagtgct ggaagtggcg cttataacga tgaagaaagc actcaagctt
     1381 tgggactttc taaaagtttt ttgcgtgaat gctttggttt atactctttt ataaatctct
     1441 ctgtgatttt aggacaaggc gattctatg
//
LOCUS       DARGEM010000196         1460 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.196, whole genome shotgun sequence.
ACCESSION   DARGEM010000196 DARGEM010000000
VERSION     DARGEM010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.196"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1020)
                     /gene="selD"
                     /locus_tag="SFZ78_001776"
     CDS             complement(<1..1020)
                     /gene="selD"
                     /locus_tag="SFZ78_001776"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(970..972),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG8212600.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1030..>1460)
                     /gene="yedF"
                     /locus_tag="SFZ78_001777"
     CDS             complement(1030..>1460)
                     /gene="yedF"
                     /locus_tag="SFZ78_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8212601.1"
                     /translation="SLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKV
                     GEGELGQNLLVGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEI
                     ISCGACLEFFNKSKELKIGNIGNAYEILNELFGKAKIITL"
BASE COUNT          485 a          252 c          178 g          545 t
ORIGIN      
        1 agaaatgata atatcatttt cttgcttatt tacaacctta gcaataattt tagcttgaat
       61 attttcatct tctagttttt ttaaacattc taaggaatct ttttcactta tagaaattaa
      121 aagtcctcct gaagtttgtg gatcacaaag taataatttt tcttcattta aatcaggggt
      181 aagttctttt ataaattcta aatttttata agctccagca ggaattaaac ccatattaaa
      241 atactctttt actccatcta aaaaaggaag ttcactttca aaaatttcaa aagaaatatt
      301 tttatttagc atttctttta aatgtcctaa aagtccaaaa cctgtaacat cactcatggc
      361 acttggatga aatttaagag caatttgact ggctttataa tttaactcca tcatgttttt
      421 aagcattata tctaaatgtt tttgatttaa catttgcgcc tttaaagctg tacttaaaat
      481 tcctgttcct aaaggcttgg ttaaaatgat acaatctccg attttagaag tattattagc
      541 aataaattta ctaggatgta cttttcctgt aacactaagt ccaaaaaaaa gctcggtgct
      601 ttctatagta tggccaccca caactaaagc attacattct ttaactttat catttgcacc
      661 ttctaaaagc tcttttaaga tgtttaaatc atgattgcaa gtatcaaaac ctactatatt
      721 taaggcatta attacctctg cacccatagc aaaaacatcg cttaaagcat ttgctgcagc
      781 aatagcacca aaatgataag cactatctac tataggagtg ataaaatcaa gcgtttgcac
      841 caaagctaaa tcgggactga tttgatatac gcttgcatct tcattatttc cgatatcact
      901 aagtaaagca ggagtttttt gcatgaaatt taaaattgtt ttaagaccac ccgggcttaa
      961 tttcgctgct cagcctgctg ctttaacaaa atgcgttaaa ttttgatttt tatattgcag
     1021 tgtttttcct tatagagtaa tgatttttgc tttaccaaaa agctcgttta aaatttcata
     1081 agcattgcct atatttccta ttttaagttc tttgctttta ttaaaaaatt ctagacaagc
     1141 tccacaactt atgatctcaa tacctaaatt ttcaagttct ttcatagcta aatgtgcttt
     1201 atgattttca tcaacattga ttaaaacact ttcatttacg caaagaattt tacttggagc
     1261 atgatctaaa ttttttaagg tacttaaaaa tcctacaagt aaattttgtc ccaattcacc
     1321 ctcacccact ttgtcggttt ttaaaaataa aacattataa tcgtgaatat ttactttact
     1381 agaatcaaaa ttcttttttt gtactttgat gcaaaactct tgtgcatttt catctacaac
     1441 agggtttaaa tttaaagagt
//
LOCUS       DARGEM010000197         1449 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.197, whole genome shotgun sequence.
ACCESSION   DARGEM010000197 DARGEM010000000
VERSION     DARGEM010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.197"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..271
                     /locus_tag="SFZ78_001778"
     CDS             <1..271
                     /locus_tag="SFZ78_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEG8212602.1"
                     /translation="RPYLEGFNLPNYIIIPSVEMSMQKLFCESSLMITDYSSVAFEMA
                     VLKKPVIYYQFDKDEFFAKHTVQKKYFDYKKDKFGKVFTNKVNIC"
     gene            312..>1449
                     /locus_tag="SFZ78_001779"
     CDS             312..>1449
                     /locus_tag="SFZ78_001779"
                     /inference="COORDINATES: protein motif:HMM:NF013652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEG8212603.1"
                     /translation="MFHIVFGCNESYVKYLSVLITSIMKNINSQKTFLDVYKEANILP
                     KIDINSLESREGFIFHILIDSIQEKTSIKLDQMIKHLSRENDYPAEIKLHIMDAELFK
                     EMDVPIWVKHYATYFRLYLGSILPENCEKCLYLDVDMLVFSDLRELFCLDLQDYIIAA
                     SPDIKQWPGSLFVGKSKKDNVRDLIIEKGPLYFNAGFMLINLKQWRLESLEKRMVNVA
                     NSYTFEVGDQDILNYVINKKVIILPCKWNFIAGHFILDRKGIFNDFKGEGNQPYWYYT
                     REEMKKNLQNLSILHYTHYVVKPWESYYTEFDVNYYPVHYDYYDEWWYVAFNTPFFNK
                     ELIKLNKMIKNKELENYSKTLAFVLNYKMGNIASIRIRNHLAYKI"
BASE COUNT          528 a          126 c          242 g          553 t
ORIGIN      
        1 tagaccttat ttggaaggtt ttaatttacc aaattatatt ataatacctt ctgttgaaat
       61 gagtatgcaa aagctttttt gtgaatcatc tttaatgata acggattatt caagtgtggc
      121 ttttgagatg gctgttttaa aaaagcccgt gatttattat caatttgata aagatgaatt
      181 ttttgcaaag catactgtgc aaaaaaaata ttttgattat aagaaagata agtttgggaa
      241 agtttttact aataaggtta atatttgtta atttttagag ttttaaatat ataaattgtg
      301 agggtttatt tatgtttcat attgtttttg gttgtaatga atcttatgtg aaatatttgt
      361 cagttttaat tacaagtatc atgaaaaata ttaatagtca aaaaactttt cttgatgttt
      421 ataaagaagc taatatattg ccaaagattg atataaattc tctcgagtca agagaagggt
      481 ttatatttca tattttaatt gattctatac aagaaaaaac ttctataaag cttgatcaaa
      541 tgattaaaca tttaagtaga gaaaatgatt atcctgcgga aattaaatta cacataatgg
      601 atgctgagtt gtttaaagag atggatgttc ctatttgggt aaagcattat gctacctatt
      661 ttaggttata tttagggagt attttgcctg aaaattgtga aaaatgtttg tacttagatg
      721 tagatatgct tgttttttct gatttgagag aattattttg tttggattta caagattata
      781 ttattgcagc atctccagat ataaaacaat ggccaggaag tttatttgta gggaaatcaa
      841 aaaaagataa tgttagagat ttgattattg aaaaaggtcc tctttatttt aatgctggtt
      901 ttatgttaat caatttaaaa cagtggagat tagaatcttt agaaaaaaga atggtaaatg
      961 ttgcaaattc atacacattt gaagttggag atcaggatat tttaaattat gttattaata
     1021 aaaaagtaat aatacttcct tgtaaatgga attttatagc tggtcatttt attttagata
     1081 gaaaaggtat ttttaatgat tttaaaggag aaggaaatca gccatattgg tattatacaa
     1141 gagaagaaat gaaaaaaaat ttacaaaatt tatctattct tcattatact cattatgttg
     1201 taaagccttg ggagagctat tatacggaat ttgatgtaaa ttactatccg gtacattatg
     1261 attactatga tgaatggtgg tatgttgctt ttaatactcc tttttttaat aaagagctaa
     1321 ttaaattaaa taaaatgatt aaaaataaag agcttgaaaa ttattccaaa acattagctt
     1381 ttgtattaaa ttataagatg ggaaatatag cttcaattag gattcgaaat cacttggctt
     1441 ataaaattg
//
LOCUS       DARGEM010000198         1430 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.198, whole genome shotgun sequence.
ACCESSION   DARGEM010000198 DARGEM010000000
VERSION     DARGEM010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1430
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.198"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            50..673
                     /locus_tag="SFZ78_001780"
     CDS             50..673
                     /locus_tag="SFZ78_001780"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEG8212604.1"
                     /translation="MEEKEQLLQEMIEFYSVKDKFELAEYLGLSRESAHNWPKRISKK
                     QILIYEKDKKIKISSKNTEKIISDDEDIVLVPFYKDNSVSAGFGSKNYEGLVQHIPFN
                     KQDLRLMFNIQGFLKIGIIPVIGDSMAPTIKEGEMIVFQDDGSMIEGGIYVIEYQSEV
                     FVKRLRKRPLSLISDNKDYPPIVMNEDEEIKIIGRVVGTYDLNYRRL"
     gene            837..1352
                     /locus_tag="SFZ78_001781"
     CDS             837..1352
                     /locus_tag="SFZ78_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212605.1"
                     /translation="MQKTINENISTGNAIIQASNIEPKFKIDPIQFKECVFYEIWTIK
                     NPQNTSYTLSAERCQTAFLNNKELIKYADPSFVMGNFIKDNQENILGIKAVKEELSKP
                     SYVTDVKSYKFISDKYKILENGNYIYILQNFKAKSEILGEYTQNAHIIFNNKGNVIKI
                     ELNQNKEFGSY"
BASE COUNT          596 a          169 c          229 g          436 t
ORIGIN      
        1 aaaaagtcaa gtatttttac ataaatatac atatgtttta ggatttaaaa tggaagaaaa
       61 agaacaatta ctccaagaaa tgatagagtt ttatagcgtt aaagataaat ttgaattggc
      121 tgaatattta ggtctttcaa gagaatctgc acacaactgg cctaaaagaa ttagcaaaaa
      181 acaaatttta atttacgaaa aagacaaaaa aattaaaatt tcaagtaaaa atactgaaaa
      241 aatcatatcg gatgatgaag atattgtttt agttccattt tacaaagaca attctgtttc
      301 tgctggattt ggttctaaaa attacgaagg cttagttcag catattccat ttaacaaaca
      361 agatttaaga cttatgttta acattcaagg atttttaaaa ataggcatta tcccagtgat
      421 aggggatagt atggcaccca ctataaaaga gggtgagatg atagtttttc aagatgatgg
      481 ttctatgatt gagggaggga tttatgtgat agaatatcaa agtgaagtct ttgtaaagag
      541 actgagaaag cgacctttat cattaattag cgataataaa gactatccgc ctatcgttat
      601 gaatgaagac gaagaaatta aaattatagg tagagtggta ggtacttatg atttaaacta
      661 taggaggttg tgaaatgaaa aaattaaaat atattttagg attaggactt ttactactaa
      721 caggttgcga aaacggtgag tataacacaa acactaatgt gctagatatt caaaatgata
      781 tccataaagc tttttataat aaaacttatt cagataaagc aaagttttat gaaaaaatgc
      841 aaaaaaccat taacgaaaat ataagtacgg gaaacgctat tatacaagct tcaaacatag
      901 aaccaaaatt taaaattgat cctatacaat ttaaagaatg cgtgttttat gaaatatgga
      961 ctataaaaaa tcctcaaaat acttcttata cgcttagtgc agaaagatgc caaaccgcct
     1021 ttctcaacaa taaagagtta attaaatatg cggatccaag ctttgtaatg ggtaatttta
     1081 tcaaagacaa tcaagaaaat atattgggca ttaaagcagt taaagaagaa ttatctaaac
     1141 catcctatgt aacagatgtc aaaagctata aatttattag cgataaatac aaaattttag
     1201 agaatggaaa ctatatttat attttacaaa acttcaaagc aaaaagtgaa attttgggag
     1261 aatacactca aaatgcccac attattttta ataataaagg caatgtgata aaaattgaat
     1321 taaaccaaaa taaagaattt ggctcatatt gattaaaatt acaatttaag tttaaggttg
     1381 aaagaaagat aatttgtcgc aaaaatacga cattttattt ttcttttgcg
//
LOCUS       DARGEM010000199         1422 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.199, whole genome shotgun sequence.
ACCESSION   DARGEM010000199 DARGEM010000000
VERSION     DARGEM010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.199"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1422
                     /locus_tag="SFZ78_001782"
     CDS             <1..>1422
                     /locus_tag="SFZ78_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212606.1"
                     /translation="KAINLNISKLNHFFYAEYPDLNSSMLVEMILDKKNTDQINTTKM
                     GKNYLLITNPPQLNNAGLCEDLYQKKLGAIIKNRPKSLTKNEKLGLKEQFPSKRDYGS
                     YFIERDVKKEDDYVLQLCPFVKLDGQIYQKYKGYFNFYNQTYSWVKLYLLEYINERLE
                     YEKVKQDFAYIDSFFKLPKELEEISEKEKEKVKEYVELFNNYLDNINSRYDQTQSNLN
                     SKPLMFKTYENVDFKKYSPLTVVLLTLTLYVLQKDLAFTQEYSLGYKLFQANIGNYQK
                     IKIPNYFNEYISFIPDDIYFYDNDKKIYIFLSKELNKNKKEDEVIYLDELAKAMFEND
                     FEEEDQTYVNFLKTLNESFDEEIEFEENIQTDKTLPSKKDLDKSIQDIMLDKELAKLS
                     IDITFFNIIKQLFPFTEFFMSQPDFFKKMILFFIDSSLDKKYYGNKLFSSFKAHFFKE
                     LGIFYALSPKGRFIKINPKSKKS"
BASE COUNT          586 a          159 c          181 g          496 t
ORIGIN      
        1 aaaaagcaat caatttaaat atctctaaac tcaatcattt cttttatgca gaatatcctg
       61 atttaaattc ttccatgcta gtagaaatga tattagataa aaaaaatact gatcaaatca
      121 atacaaccaa aatgggtaaa aattatttgc ttattactaa tccaccacag cttaacaatg
      181 caggactttg tgaggacttg tatcaaaaaa aattaggagc aataataaaa aatcgcccaa
      241 aatcccttac aaaaaatgaa aaacttggat taaaagaaca atttcctagt aaaagagatt
      301 atggctctta ttttatagaa agagatgtta aaaaggaaga tgattatgta ttgcaacttt
      361 gtccttttgt gaaacttgat ggacagattt atcaaaaata taaagggtat tttaattttt
      421 ataatcaaac atattcttgg gtcaaacttt atttattaga atatataaac gaacgattag
      481 aatatgaaaa agttaagcaa gattttgctt atattgatag cttttttaaa ttgcctaaag
      541 aacttgaaga aattagcgaa aaagaaaaag aaaaagtaaa agaatatgtc gagcttttta
      601 ataattattt agataatatc aattctcgct atgaccaaac acaatccaat cttaactcaa
      661 aaccattaat gtttaaaaca tatgaaaatg tagattttaa gaaatactca cctttaacgg
      721 ttgttttatt gactttgact ttgtatgttt tacaaaaaga cttagctttt acgcaagaat
      781 attctttggg atataaattg tttcaggcaa atattggtaa ttatcaaaag attaaaatac
      841 caaattattt taatgagtat atttcattta tccctgatga tatttatttt tatgataatg
      901 ataaaaaaat ttatatcttt ttatctaaag aattaaataa aaataaaaaa gaagatgaag
      961 ttatttattt agatgaatta gctaaagcta tgtttgaaaa tgattttgaa gaagaagatc
     1021 aaacttatgt aaatttttta aaaaccttaa atgaaagctt tgatgaggag attgaatttg
     1081 aagaaaatat acaaacagac aaaactcttc cttcaaaaaa agatttagat aaaagcattc
     1141 aagatattat gcttgataaa gaacttgcaa aattatctat agatattact ttttttaata
     1201 tcattaagca actttttcct tttacagaat tttttatgag tcagcctgat ttttttaaaa
     1261 aaatgatttt attttttata gattcaagct tagataaaaa gtattatggt aataaattat
     1321 tttctagttt taaagcacat ttttttaaag aactagggat attttatgca cttagcccta
     1381 aggggcgttt tataaaaatt aatccaaaaa gtaaaaaatc ac
//
LOCUS       DARGEM010000200         1420 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.200, whole genome shotgun sequence.
ACCESSION   DARGEM010000200 DARGEM010000000
VERSION     DARGEM010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.200"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1090
                     /locus_tag="SFZ78_001783"
     CDS             <1..1090
                     /locus_tag="SFZ78_001783"
                     /inference="COORDINATES: protein motif:HMM:NF025387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TNT domain-containing protein"
                     /protein_id="HEG8212607.1"
                     /translation="AKKRTILIPRIEDINISPDTSCMHPILEDNTLVCLHGGRVKLKA
                     KKAKRIKSDNVPIMLDNEIQGASISGCLNPPILGGPCTKVAMVFAYTYSDHKVNNKHS
                     VLQMGLIGMSIKGYPIFAIPKKNKIKFALAKIQASPLAKIKFDRIRWEGMGGKLGAAQ
                     RRRREKSKEKAKMLLYLENENKKGKVSDKEVHLYKHNGIWPKDTPKPRSSDNILEDGE
                     IDWPKKYGYKIPPIPKEITLKKGMKLDRYGDNSGSFVCPFKEKKGVMPYEKRSLPYED
                     NEAMQKTYKRYEVLEDINMESVERKIKMSGDDKLIEKIKELKEKNKFHSPKIGKISPY
                     FEQEGGGTQIKLPISIENLIQLDFIKQI"
     gene            1107..>1420
                     /locus_tag="SFZ78_001784"
     CDS             1107..>1420
                     /locus_tag="SFZ78_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212608.1"
                     /translation="MTREQAELIIKEEKLIYITWRDYDNTAGEYHFTIWFNPNNNKYE
                     AVYIGERGGVELSYSFDSEKEAIDKMLQMNYKQKYFSVNEDYSMQNRKEVALRIIQEE
                     NL"
BASE COUNT          617 a          157 c          259 g          387 t
ORIGIN      
        1 ggctaaaaaa agaacaatcc ttattcctag aatagaagat attaatataa gtcctgatac
       61 ttcttgtatg catcctatct tagaagataa tactttagta tgcttacatg gaggtagagt
      121 taagttaaaa gcaaaaaaag ctaaaagaat aaaatcagac aatgttccta ttatgcttga
      181 taatgaaata caaggagcta gtataagtgg atgtttaaat ccacctatac taggaggacc
      241 ttgtactaaa gtagctatgg tatttgctta tacttattca gatcataaag ttaataataa
      301 acattctgta ttacaaatgg gtttgatagg aatgagtata aaaggttatc ctatatttgc
      361 tatacccaaa aagaataaga ttaaatttgc tttagctaaa atacaagcta gtcctcttgc
      421 taagattaaa tttgacagga taagatggga agggatggga ggtaaattag gagcggcgca
      481 aagaaggaga agagaaaaaa gtaaagagaa agcaaaaatg cttttatatt tggaaaatga
      541 aaataaaaaa ggtaaggtaa gtgataaaga agttcatctt tataaacata atggaatatg
      601 gcctaaagat actccaaaac ctagaagctc tgataatatt cttgaagatg gggagattga
      661 ttggcctaaa aaatatggct ataaaatccc acctatacca aaagaaatca ctttaaaaaa
      721 agggatgaaa ctggacagat atggagataa ttcaggtagc tttgtttgtc cttttaaaga
      781 gaaaaaagga gtgatgcctt atgaaaaaag atcattgcct tatgaagata atgaagccat
      841 gcaaaaaacc tataaaagat atgaagtatt agaagatatt aacatggaga gtgttgaaag
      901 aaagattaaa atgagtgggg atgataaatt aatagaaaaa attaaagagt taaaagaaaa
      961 aaacaaattc cattctccaa aaataggtaa aatatctcca tattttgaac aagaaggtgg
     1021 aggaacacag attaaacttc ctatttccat agaaaactta atacaattag attttatcaa
     1081 acaaatataa taataaagga tagaaaatga caagagaaca agcagaacta attataaaag
     1141 aagaaaagtt aatctatata acttggcgtg attatgataa tacagcagga gaatatcatt
     1201 ttacaatttg gtttaatcct aacaataata aatacgaagc tgtttatatt ggagaaagag
     1261 gaggtgttga acttagctat tcttttgata gtgaaaaaga agccattgat aaaatgttac
     1321 agatgaatta taaacaaaaa tattttagtg taaatgaaga ctattcaatg caaaatagaa
     1381 aagaagtggc actaagaatc atccaagaag aaaatctaga
//
LOCUS       DARGEM010000201         1375 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.201, whole genome shotgun sequence.
ACCESSION   DARGEM010000201 DARGEM010000000
VERSION     DARGEM010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.201"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ78_001785"
     CDS             <1..171
                     /locus_tag="SFZ78_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEG8212609.1"
                     /translation="KELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETIDLIKKEK
                     AKKENLIQGEKK"
     gene            168..353
                     /locus_tag="SFZ78_001786"
     CDS             168..353
                     /locus_tag="SFZ78_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212610.1"
                     /translation="MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
     gene            453..839
                     /locus_tag="SFZ78_001787"
     CDS             453..839
                     /locus_tag="SFZ78_001787"
                     /inference="COORDINATES: protein motif:HMM:NF019388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212611.1"
                     /translation="MPLDTPLNTKNFKLKDKLGLNIKEQIEICNKYGITHKLYVKRKE
                     KGWSLKEILETPKGDKRFKYIIIDDIRRNKQAVSLNSHSKFGRNVLHLGNMSKKANLH
                     FKYSKLDHLALQNNLYQDKNGVIKAY"
     gene            913..1251
                     /locus_tag="SFZ78_001788"
     CDS             913..1251
                     /locus_tag="SFZ78_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212612.1"
                     /translation="MALVYVASPYKALAVRESQRKAQAISVAQQECLKIMRECEGFTP
                     VSPILQFSYLDENKHRDKALQMGLELLKASDYIYMSNHKDAKYSKGMQEELALAKKLG
                     IKELVLELPL"
BASE COUNT          564 a          174 c          242 g          395 t
ORIGIN      
        1 aaagaactta atcttagcgt gacacgcgtt catcaaatct atactgaagc tcttagaaag
       61 ttaaagagtc ctaaaaataa agacaagtgg atggctatct ttgaaacgat tgacttaatc
      121 aaaaaagaaa aagcaaagaa agaaaactta atacaaggag agaaaaaatg ataccaatga
      181 ttaaaggtga gaaagctgat tatagtgctt cgctttttga gataaagggt gtaagcatta
      241 tttataaaga aagtggagtg tttgtagatg ttttaaaagg aatttatcct gattatattg
      301 caaaaaaaat cattcgtttt catttgggta aaaagcttaa caaaagtgct taaattaaag
      361 cactttgatt aagtttttta aaacttaaat ttatttagaa agggaaaaat gcagttaagt
      421 tattattgtt ttaaagatag aaaaaaagaa aaatgccttt agatacacca ttaaatacta
      481 aaaattttaa acttaaagat aagcttggtt taaacataaa agaacaaata gaaatttgta
      541 ataaatatgg gattacccac aagctttatg tgaaaagaaa agaaaaaggt tggagcttaa
      601 aagaaatttt agaaactcca aaaggagaca agcgttttaa atatattatt atcgatgata
      661 tcagaagaaa caaacaagca gttagcctaa acagtcatag taaatttggt agaaatgttt
      721 tacatttagg aaatatgagc aaaaaagcta acttgcattt taaatattca aaacttgatc
      781 atctagcctt gcaaaataat ttatatcaag ataaaaatgg agtaattaag gcgtattaga
      841 aaatttaaca aatctactaa ggtggatttg attaagtttt ttaaaactta aatttattag
      901 aaaggattaa caatggcatt agtttatgta gcctctcctt acaaagcttt agctgtaaga
      961 gaaagtcaaa gaaaagctca ggctattagt gtagcccagc aagaatgctt aaaaattatg
     1021 cgtgaatgtg aaggctttac acctgtttca cccatactac aatttagtta tttggatgaa
     1081 aacaaacaca gagacaaagc tttacaaatg ggattagagc ttttaaaagc aagtgattat
     1141 atttatatga gcaatcataa agatgctaag tattctaagg gaatgcaaga agaattagca
     1201 ttagctaaaa agcttggcat taaagagcta gttttggagc tgcctctttg acttcgcaat
     1261 gtggcaaagc caccttttgc gataaagagc tacactccct taacccacct gaaggctccg
     1321 cgacactgcg tgaaaaaaaa ggtttaagga tagttaagaa aagaactaaa cacgc
//
LOCUS       DARGEM010000202         1366 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.202, whole genome shotgun sequence.
ACCESSION   DARGEM010000202 DARGEM010000000
VERSION     DARGEM010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.202"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1366
                     /locus_tag="SFZ78_001789"
     CDS             <1..>1366
                     /locus_tag="SFZ78_001789"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212613.1"
                     /translation="LQYDETVLPTELECCYNEFKYYQKSNNEIATLGWAISYQLQVLW
                     QNSPKIDTIQNYHLPVKQNKPNNPQAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQT
                     QEMKRLRQNSERFSRHVDNKTNEVREERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHT
                     KEDIYTQNFTKQIEIILQKTHNILILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIK
                     ENDEISKDYKRILDCKPYELDTLNCQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYA
                     RLDKFIFATSPFGLTYNTYETLEQTYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQ
                     GDREKVSYRVDEMLVYVYDSFDFLDQGHEFDDEGNFIKLGQPVGAWDFNTKTFNIEGS
                     LYQMATYREWLEWEIDGYKIDCSISPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDF
                     KLYSK"
BASE COUNT          546 a          189 c          207 g          424 t
ORIGIN      
        1 ttacaatatg atgaaacagt gttacctaca gaattagagt gttgttataa tgaatttaaa
       61 tactatcaaa aaagcaataa tgaaatagca acactaggtt gggctattag ctatcaactt
      121 caagtattgt ggcaaaatag ccctaagata gatacaatac aaaattatca tctccccgta
      181 aaacaaaata agcctaataa tccccaagca gaacaaagac taaaagaaat acaaaatttc
      241 ttacaaagta aaggtataga acctcttatt ttacattata ccccttatcc aaacaacaca
      301 caaacccaag agatgaaaag actaaggcaa aattcagagc gtttttcgcg ccatgtagat
      361 aataaaacaa atgaagtaag agaagaaagg cgttctatta aattttacac tacgctagat
      421 tgggataagt tttattctca ttttcctata ataaaaagac taagtaaaaa atttcataca
      481 aaagaagaca tatacactca aaattttaca aagcaaatag aaataatctt acaaaaaact
      541 cataatattt tgatattaaa aaatttacct caaggagaat ataaatttga ttttgcgatc
      601 gatataaaag aaaatcgaag cgataaaaat gaagaatctt atttcatcat taaagaaaat
      661 gatgaaattt caaaagatta taaacgcatt ttagactgta agccctatga gcttgatact
      721 ttaaattgtc aatatatagg tgtgggtgat gatgagtttt tcagacaaat ttggcaaaat
      781 ttaggtataa atattgcaga gaaatttaag gtagattttt cttatgctag acttgataaa
      841 tttatttttg cgacatcgcc atttggactt acttataata catatgagac tttagagcaa
      901 acttatgatg aactcatgca agatctatct ctttatgctt gtagtggtaa attttctttt
      961 aattttgttc cttcaaaatt aagcattaaa aaagaaattc aaggagatag agaaaaggta
     1021 tcataccgcg ttgatgaaat gcttgtttat gtttatgata gctttgattt tttagatcaa
     1081 ggacatgaat ttgatgatga gggaaatttt atcaagctag gacaacctgt tggagcttgg
     1141 gattttaata cgaaaacttt taacatagaa ggttctttat atcaaatggc aacttataga
     1201 gaatggcttg aatgggaaat agatggatat aaaattgatt gttcaataag ccctcaaaga
     1261 attctgcaat ctccaaaaac caaacaatac tatctttaca atcaagatta tcaagactat
     1321 caaaaattca ctccttatgg tttggacttt aaactttata gtaaag
//
LOCUS       DARGEM010000203         1360 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.203, whole genome shotgun sequence.
ACCESSION   DARGEM010000203 DARGEM010000000
VERSION     DARGEM010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.203"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..705)
                     /locus_tag="SFZ78_001790"
     CDS             complement(<1..705)
                     /locus_tag="SFZ78_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8212614.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSRWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNI"
     gene            complement(698..>1360)
                     /locus_tag="SFZ78_001791"
     CDS             complement(698..>1360)
                     /locus_tag="SFZ78_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212615.1"
                     /translation="SISFYGFDTGGRPRGYFLDTLGIFAACFSPLVFVYFFYTIYRLT
                     FQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLLIKTLMQSYRVRLPV
                     FRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNYHFTKELALALKKQD
                     VLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKYDMDKKIVKVKLGKYEKVYQILN
                     YD"
BASE COUNT          510 a          222 c          149 g          479 t
ORIGIN      
        1 tatattaaca aattgacttt taagtgtttt aaaatctgga atataagcat aaccactaag
       61 cgtatctata acgatacaaa gagcatgctt ttttgataac aaacgtataa tgcaatctga
      121 attattcttt gctaaagttt tttcatatgc ataattggca ttttttaacg gagaatacac
      181 tctgcccatt tcatcaaata ctaatctagt aaatcctgaa caagatcctt tgaattcaac
      241 cttttctatt ccgaatcttt ttgtaagatt aaatctttgt gtagtttttt catcatcttt
      301 actaataact ccactttgac ctgaattcat taatttgtta tgattgatta catcaacagc
      361 aatttctcta tctatattga tttcagtttt acctaaatta gcatttccat cgccattttt
      421 atccaagaaa atagtatatg tttgatcata acctgtggca gctgatttta taaaataaat
      481 ctgccaccta cttttaaacc actctctttt tgcgatagcc aactcatcaa ctcttatacc
      541 ttcttgcatc atggctaaac tttgggtata ttggatatca ttaagaattt gtattgcgcc
      601 ttctagtaaa ttgtcttttt ttaagtaaag actgcctaaa ttaaaaacta tacctaaaat
      661 aagaattata aacacaaatt ctaacaaact gaaagcttta atcatagttt aaaatctgat
      721 atactttttc atattttcca agttttactt taacaatttt tttgtccata tcatacttat
      781 cggcttgttt taaagctttt aaataaaact tattgctatt ttttattcca taaaatcgca
      841 atcttttttg caaacttggg gctgttgcaa gctctaaaac atcttgtttt tttaatgcta
      901 gcgccaattc tttagtaaaa tgataattat tggcaaaatg acgatttgga ttgtttataa
      961 aataatacaa taattgatta gcgacgatta aaaagtaaca aaatatcaaa aaaattatag
     1021 aacattctat aaagatttta taccttaatc gaaaaactgg taatctcacc ctataacttt
     1081 gcattaaagt ttttataagc aaaggagtgc aaataacaca aaaaggcaaa aaatcatcta
     1141 aaaaaagttt ttgtcttaaa gaaagcaaca aacaaaatac aaatgttacg ctcattaaaa
     1201 accataataa atttttatat ttctgaaaag tcaaacgata aatagtataa aaaaaataca
     1261 caaaaaccaa aggagaaaaa catgcagcaa aaattcctaa agtatctaaa aaataacctc
     1321 ttggacgacc acctgtatca aaaccataaa aactgatact
//
LOCUS       DARGEM010000204         1337 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.204, whole genome shotgun sequence.
ACCESSION   DARGEM010000204 DARGEM010000000
VERSION     DARGEM010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.204"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            65..265
                     /locus_tag="SFZ78_001792"
     CDS             65..265
                     /locus_tag="SFZ78_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212616.1"
                     /translation="MIKAYFENNAINVKAFARTHNISYDILHRIIKGEITGERNTKGS
                     TKAVFKKLLELGIINELPQGLK"
     gene            262..>1337
                     /locus_tag="SFZ78_001793"
     CDS             262..>1337
                     /locus_tag="SFZ78_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8212617.1"
                     /translation="MVYFLETKEAAQAFNVSTGALRLAASRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDKLLTAFNQELITKNTLIYDEKMQKVKLSEIITTDNLKTINNSLKTS
                     NLNLTESKINDDLAVLNLKFENLSDELKEDAKSKVKLLKQVEKYIEGGLTLKRALFLC
                     NVEWRNYSNWRSDYKKYGILGLVDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNF
                     TELWWQIHKEAAIKENYDFIGFDLGKVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADVIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVGKSNSLSLTRLLWKAID"
BASE COUNT          530 a          186 c          239 g          382 t
ORIGIN      
        1 aattgaaatt ttatcacaat taaaaataaa cttcaattaa aattgaagta ttgaaggaga
       61 aaaaatgatt aaagcatatt ttgaaaacaa tgctattaat gtaaaagctt ttgctagaac
      121 tcacaacatt agctacgata ttttacacag aattatcaaa ggcgaaatta caggtgaaag
      181 aaatactaag ggtagtacaa aagcggtatt taaaaagctc ttagagctcg gcatcattaa
      241 tgagcttccg caaggattaa aatagtgtat ttcttagaaa ccaaagaagc tgcacaagct
      301 tttaatgtaa gcacaggtgc tttgagactt gcagcaagta gaaactcaaa taaatacgag
      361 tggttaaaag tagataatga aaaaggcggc aggggtggca aaaaactact atttaaaata
      421 agcaaagata agcttttaac cgcctttaac caagaattaa tcactaaaaa tactttaatt
      481 tatgatgaaa aaatgcaaaa agttaaattg agcgaaatta ttactaccga taatttaaaa
      541 actataaata atagtttaaa aactagtaat ttaaatttaa cagagtcaaa aataaatgat
      601 gatttggctg ttttaaattt aaaatttgaa aatttaagcg atgaacttaa agaagatgcg
      661 aaaagtaaag taaaattact taaacaagta gaaaaatata ttgaaggtgg tcttacactc
      721 aaaagagcat tgtttttatg taatgtagaa tggagaaatt attctaactg gcgttcagac
      781 tataaaaagt atggcattct aggcttagtc gacactcgcg gacttcaccg caaagataaa
      841 actaaactta gtgcttggat gcaagaatat gccttaagag agtatcgcac ctttggagca
      901 ggtggattta atttcactga gctttggtgg caaattcaca aggaagcagc cattaaagaa
      961 aattatgact ttataggttt tgatttggga aaagtaaagc cactctttag tgtaaaaacc
     1021 ttacaaaatt tcattaaaaa ctactataaa gataaaccat tagaacattg tattatcact
     1081 caaggcttag atcgtgcaaa atctaagttt ctccctgcac aaggaaatca aagagagcta
     1141 tatgacatga aaaacatgtg ttggcaaatc gatagttccc cagctgatgt tatagtaaga
     1201 gatgatgaaa ccttggagcc tttccgccct catatcttaa gtgtcgttga tgtctttagc
     1261 ggtatgggag tagctacttt ggtaggaaaa tcaaactctt taagcctaac tagactttta
     1321 tggaaagcca tagataa
//
LOCUS       DARGEM010000205         1314 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.205, whole genome shotgun sequence.
ACCESSION   DARGEM010000205 DARGEM010000000
VERSION     DARGEM010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.205"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..312)
                     /locus_tag="SFZ78_001794"
     CDS             complement(<1..312)
                     /locus_tag="SFZ78_001794"
                     /inference="COORDINATES: protein motif:HMM:NF027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212618.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKME
                     KL"
     gene            complement(424..672)
                     /locus_tag="SFZ78_001795"
     CDS             complement(424..672)
                     /locus_tag="SFZ78_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212619.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK"
     gene            complement(669..1010)
                     /locus_tag="SFZ78_001796"
     CDS             complement(669..1010)
                     /locus_tag="SFZ78_001796"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212620.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLK
                     ALHFNNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAY
                     KELFNILGAKK"
     gene            complement(1021..>1314)
                     /locus_tag="SFZ78_001797"
     CDS             complement(1021..>1314)
                     /locus_tag="SFZ78_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HEG8212621.1"
                     /translation="ILCEIREHYNAPVIINSGYRCKEHNAEVGGAPKSQHAIGSAADF
                     VVKGVKTEEVHQYVLITYGERGLGIAIKHNFNDPYAGFVHLDTRGKKARWTYP"
BASE COUNT          446 a          223 c          148 g          497 t
ORIGIN      
        1 tagtttttcc atttttttat taattaactt ttctacaagt tgctcaattt taagcaatgc
       61 atctgtcccc atataagctg caaaaccacc cactgcaacg ctaagcttta tgccaaaatt
      121 aagataattt acaatttcaa aaactagata tgctacaaac atagaaccta gcataccttt
      181 taaaaagagt gtaaatttac cttttaaatt aagagctttg cttaatttat tttttgttac
      241 aattcctaca agtccagcta taaagcttac tatcattaaa accatatata caaatatatc
      301 ttctaatttc attgctagtt ccttgtaaaa atttcaaata aatataataa agctaatgca
      361 aaagttgaaa acaaaagagc tataagaaga tcttttgcaa tgcttttttg atttatcatt
      421 ttattatttt ctttcatctt tctctcctgt gcaaagcttg gctatatttt caacttctaa
      481 gtaatattta gagatttctt tagcactttc taagtctttt ttgtctaaag gctttaaagg
      541 aagttttaaa gggcatttaa taggaacttt aacttctttg atttcggttt taatcaaaat
      601 atctttagaa gcacaagcgc ttaaaaaaac aaaaggtata attaatagga aaattctcat
      661 tttatcattc acttttttgc tcctaaaata ttaaataatt ctttataagc tttaagttca
      721 ctctcacagc ttttatcttt aataaaaacc ttatccactt ttaaaacttc ttttaaagtc
      781 tctttgggct ttaaatcaag ttttaattta tcaatagctt tattttgctg ggctaattta
      841 tctttaaaaa cattgatttc attgttaaaa tgtaaagctt taagttttag attttcattt
      901 tctaaagcta aagcattgtt ttttaaatat aaaaaaccac aaagagcaat tagaacaaaa
      961 aaagctattt ttgaaggact taaaaacctt gataaaataa aactaaacac aatcttttcc
     1021 ttatggataa gtccatcttg cttttttgcc tctagtgtct aaatgtacaa acccagcata
     1081 aggatcatta aaattatgct ttatagcaat ccctaaacct ctttcgccat aggtgattaa
     1141 aacatattga tgaacttctt ctgttttaac tcctttaacc acaaagtctg ctgcacttcc
     1201 tatagcgtgt tggcttttag gggctccacc aacctctgca ttatgctctt tgcagcgata
     1261 tccactattt ataataacag gagcattgta atgttctctg atttcacaaa gaat
//
LOCUS       DARGEM010000206         1295 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.206, whole genome shotgun sequence.
ACCESSION   DARGEM010000206 DARGEM010000000
VERSION     DARGEM010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1295
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.206"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            20..691
                     /locus_tag="SFZ78_001798"
     CDS             20..691
                     /locus_tag="SFZ78_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8212622.1"
                     /translation="MRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTEKSEEKLNYLNE
                     NEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEIL
                     KISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNN
                     IYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTVKA
                     ALLNN"
     gene            complement(735..1163)
                     /locus_tag="SFZ78_001799"
     CDS             complement(735..1163)
                     /locus_tag="SFZ78_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212623.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIEELEFNKEDIFEEL
                     FYALGGLGGMYSVEMIQSRIANFIKILGGEPKLLLERFTA"
BASE COUNT          468 a          149 c          186 g          492 t
ORIGIN      
        1 aaaaacaaaa ataacttatt tgagagtatt aactagcttt ttttctttta taagcgataa
       61 taatgatgat ttgtttgttt tttcctttga tatgaagaaa attagattta gaacagaaaa
      121 atcagaagaa aaattaaatt atcttaatga aaatgaaatt ataaggctaa ataatgtttt
      181 agagaaagaa aaagcaaaaa aagaagttta taatagtttt agaaactctt tactgataaa
      241 acttatgctt tatggaggac ttagaatttc tgaagcttta aatgtaaaac tttgtgattt
      301 tgaagaggtt gatgatgaaa tattaaaaat atccataata ggcaagggcg gtaaagaaca
      361 atttgcattt attaaaaaag aagaagtaga tgatgagctt gaatatttta aagaaaatat
      421 ccaagatagt gattacataa tgcaaactag cacaggaaaa catttaaata gaagtaatgc
      481 ttttttgatt gtaaataata tttacgctaa agctttgatc agcaaaaaag gacttcattt
      541 gcttagacac actttagcca tgagattaac agccaaagga acaaaccttg tggtcataca
      601 aaaaattcta agacatgcaa atctaaatac tactactata tatgccaaag caacaaatga
      661 tacagtaaaa gctgcgttat taaataatta attttttcta aaattgatta tttacataga
      721 cttctttttg aagtctatgc tgtgaatctt tctaataaaa gtttaggttc tccgccaagt
      781 attttgatga aatttgcaat tcttgattgt atcatttcta cggaatacat acctcctaaa
      841 ccgcctaaag cataaaataa ttcttcgaaa atgtcttctt tgttaaattc aagttcttct
      901 atatcaataa gatcaggagt tcggctacat ttttgtaaat tttgatatat tttgactaaa
      961 atcttgattt tttgtagatt attttcagcc tctaaataag aatttaagtg tattattagg
     1021 gtttttgatt tttttatatc ttctttttga atttgttcct tgggatcaat tttttcagtt
     1081 aacatattat taaaaatatt tgctttttct cttgcgcttg acagtgtggt tgttgggtat
     1141 tttcctattt taatactttg tatttttttg tttaacctat atctaaaata aaaaaaagat
     1201 aatagtacct tttagcgaat cttttgcttc gatgtagaga ttttttgtgc atgcatcttt
     1261 aatatatgtt ctttttttac aattaaagtt ttaag
//
LOCUS       DARGEM010000207         1276 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.207, whole genome shotgun sequence.
ACCESSION   DARGEM010000207 DARGEM010000000
VERSION     DARGEM010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.207"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..177
                     /locus_tag="SFZ78_001800"
     CDS             <1..177
                     /locus_tag="SFZ78_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8212624.1"
                     /translation="RKLGYLCLVLASYHYFLTPKIPMFWEWSALIIALFYFIVRYTKT
                     LKKLKSNNLTFIKT"
     gene            complement(142..>1276)
                     /locus_tag="SFZ78_001801"
     CDS             complement(142..>1276)
                     /locus_tag="SFZ78_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8212625.1"
                     /translation="NLEHKEQIIFLALLKEEYALSNESSISREMNSLLSLISENDLER
                     HKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEILQRIINFEPKQSKKIKIES
                     VLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDKKVLERLHSWGIKSNKNIEA
                     KIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKWVGESEQNVRKIFDTYKNIV
                     QTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVIIATTNFLE
                     NLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYELSGAQIL
                     MVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSKIVGF"
BASE COUNT          420 a          199 c          138 g          519 t
ORIGIN      
        1 agaaaactag gatatttatg cttagttttg gcaagttatc attatttttt aaccccaaaa
       61 attcctatgt tttgggaatg gagtgcttta attatagctt tgttttattt tatagttcgc
      121 tatacaaaaa cattaaaaaa gttaaaatcc aacaatctta cttttatcaa aacttgaatt
      181 taattctttt tgtatgcttt ctataaaatc ttgcatttta aaaaccccat cttttgatac
      241 agctactttc aaagctgtat tcttcaccac cattaaaatt tgtgctccac ttaattcata
      301 atttgataaa atatttatat caaaatcttt ttcaaataat gcttttttag gtagaaattt
      361 ttcccaaatt ttaagcctat ctttaaaatc aggtttttta aattctatct tataatcaaa
      421 tcttcttgaa aatgcactat ctaagttttc taaaaaattt gtcgtagcga taatcacacc
      481 actaaaacgc tcaatttgct ctaagaatat attttgcatt tgattatgca ttttatcgct
      541 accactactt ccatctacac gcgtacttaa aaactgatca gcttcattga gaagtaaaat
      601 aggactttgt ttacaagttt gcacgatatt tttataagta tcaaaaattt ttcttacatt
      661 ttgctcactc tctccaaccc atttgctcaa aattttagaa cagtcaaaac taaggacaga
      721 ttttttcatt gatttagcca tagctaaagc tgacatagtt tttccagtac cagcaggacc
      781 ataaaaaata attttagctt ctatattttt attactcttt ataccccaag aatgaagtct
      841 ttctaggact tttttatctt gttgttttaa aatattttct aaaagctctt ttgtattttc
      901 aggcataata atatcattga tgtcagtgct tggttctata agctcgaaaa tatcttgatc
      961 ttttaaaaca ctttcaattt tgattttttt actttgtttt ggttcaaaat ttataattct
     1021 ttgtaaaatt tcatcgataa taaaaaaact tttagaaata tctccaaaag catttaaata
     1081 ttcatcatac tcgattaagt ttaaaagagg agcattttct tgtaatagtt ttttattttt
     1141 atgcctttct aaatcatttt cactgattaa agaaagtaaa gaattcattt ctctagaaat
     1201 cgaactttca ttacttaagg cgtattcttc ttttaaaagt gctagaaaaa taatttgttc
     1261 tttatgttca agattg
//
LOCUS       DARGEM010000208         1273 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.208, whole genome shotgun sequence.
ACCESSION   DARGEM010000208 DARGEM010000000
VERSION     DARGEM010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.208"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            125..1018
                     /gene="msrP"
                     /locus_tag="SFZ78_001802"
     CDS             125..1018
                     /gene="msrP"
                     /locus_tag="SFZ78_001802"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG8212626.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            1018..>1273
                     /locus_tag="SFZ78_001803"
     CDS             1018..>1273
                     /locus_tag="SFZ78_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8212627.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFI"
BASE COUNT          453 a          189 c          194 g          437 t
ORIGIN      
        1 aatcactata aagaattttg cgaagaaata ttctacaata tagaacttga aaaaatcaca
       61 caaaattaat cctgtattaa cattgttata gtttaataat aaaaattttt aataaggaaa
      121 aattatgctt ataacacctg aaaaacttta taaacaaagg agaaattttt taaaacttgg
      181 agcgggtgct ttaataagtt caagcgtgct tgcttctaaa ctatctgctt taaatttcac
      241 aagcgatact aatccaaaca aacttgaaat cagcgatgaa gaactggcta caaattatgt
      301 caatttttat gaattttcaa cagataaaag aaaggctgta tcattggcac aaaatttcaa
      361 tactcaaaat tggaaaatcg atatcagtgg agaaatagaa aaacctttaa ctttaagcat
      421 ggaagatatt ttaaaatttc cactagaaga aagaatttat cgttttcgct gtgttgaaac
      481 ttggtctatg gtggtacctt gggtaggctt tgaattgcgt cgtttgattg aaatggcaaa
      541 acctacaagc gaggcaaaat ttgttaaatt taccactctt ttagataaga gccaatttcc
      601 cgatcaagac gctttatttc caactataga ctatccttat gtagaaggac ttcgcatgga
      661 tgaagctatg catcctctta ccttgcttgc agtaggaatg tataaaaaag ccttaaagcc
      721 tcaaaatggc gctccaatac gccttgttgt tccttggaaa tatggcttta aaagtattaa
      781 atccatagtt aaaatagaat ttaccaaaga acagcctaaa tccacttggg aaagttacgc
      841 tccaagtgaa tatggttttt atgctaatgt caatcctaat gtttctcatc ctagatggtc
      901 tcaagctaac gagagggctt taggagactt ctttaccaaa cctactttaa tgtttaatgg
      961 atatgaaaaa gaagtggcaa gtttatataa aaacatggac ttgaaagtga atttttaatg
     1021 cagacaaaat actttaaatt tcttgcttat tttagcttta tcataagttt aatctatggc
     1081 ttttatcata tcataaaagc ctttgatttt gtaaaagaag cctatattta cactggaata
     1141 tttgctttaa tctttttaaa tttaagtctt ttattttctt tacttaaatt taaaaaaaca
     1201 aaaaattatc ctaaaatttt aggtattttt gcagcttttt gggcgatttt gcacttttta
     1261 aattatttta ttt
//
LOCUS       DARGEM010000209         1259 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.209, whole genome shotgun sequence.
ACCESSION   DARGEM010000209 DARGEM010000000
VERSION     DARGEM010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.209"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..177
                     /locus_tag="SFZ78_001804"
     CDS             <1..177
                     /locus_tag="SFZ78_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8212628.1"
                     /translation="LETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQ
                     IFCTQDAFLILENS"
     gene            174..878
                     /gene="trmD"
                     /locus_tag="SFZ78_001805"
     CDS             174..878
                     /gene="trmD"
                     /locus_tag="SFZ78_001805"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG8212629.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            889..1245
                     /gene="rplS"
                     /locus_tag="SFZ78_001806"
     CDS             889..1245
                     /gene="rplS"
                     /locus_tag="SFZ78_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG8212630.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT          457 a          141 c          233 g          428 t
ORIGIN      
        1 ttggaaactg gagcttctta tttatttgaa attcaaagtg atgaaaaatg ggttgaaaaa
       61 aaatatccta aaatattttt tattccatat ttggataaat ttgttaaaaa tatagatata
      121 gaaaaacgac agattttttg cacgcaagat gcttttttaa ttttagaaaa ttcatgaaat
      181 ttagtttcgt ttctttgttc cctaatctta tggaatttta ctttcaagat tctatacttg
      241 caagagcaaa agaaaaaaaa cttttcaaac ttaattttta taatccaaga gatttttcta
      301 aaaattctta tcataaagtc gatgattata aaataggtgg tggagctgga cttttgatgc
      361 aagctgaacc tatgtatgag gtgctaagaa gtattcaaga aaaaaaagaa aatccctatt
      421 ttattttttt aaatccaagt ggtaaaacct ttaatcaaaa agacgccaaa cgcttaagta
      481 aaaaagaaca tatagttttt gtatgtgggc gctatgaagg tatagatgaa agagtgcttg
      541 aaatttttgc gaatgaagtt tttagtatag gggattttat tttaactgga ggagaattac
      601 ctgcgcttgt aatgtgtgat gcaattttaa gaaatgttaa cggggtttta ggaaatatgg
      661 aaagtttgga agaagaaagc tttgaaaata atttactcga agcgcctgct ttttcaaaac
      721 cttttatttt tgagaaaaaa aataaaaaat tttatactcc ttcagagttt ttaaagggta
      781 atcacgctag aattgcaagt ttaaaaacta ctttggcgtc ttgcaaaacg aaattttttc
      841 gtccagattt atttttagag catgaacgca aaaaataagg gattttttat gaaaaataaa
      901 tatatagaac aatttgaagc aaaacaaatt gaaggtaaaa atgttccaga ttttcgtgct
      961 ggtgatactt taaagcttgc aattcgcatc aaagaaggag ataaaacaag aatccaaaat
     1021 tttgagggta tttgtattgc tagaagaggt aatggcgtaa gtgaaacttt tatcgtgcgt
     1081 aaaattggcg ctaataatgt tggcgttgag agaatttttc ctatttatag tgaaagttta
     1141 gaaagtatta ctgttttgcg tcgtggtcgt gtacgccgtg caagattatt ctacttaaga
     1201 gatagacgcg gtaaagcagc gcgtattaaa gagcttaaaa aataatttat aattatttt
//
LOCUS       DARGEM010000210         1238 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.210, whole genome shotgun sequence.
ACCESSION   DARGEM010000210 DARGEM010000000
VERSION     DARGEM010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1238
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.210"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            78..377
                     /locus_tag="SFZ78_001807"
     CDS             78..377
                     /locus_tag="SFZ78_001807"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212631.1"
                     /translation="MKILKNKYFILWMIGFFAIVCLCLYFNLEVKIIASAISAYAVSI
                     SLVLNAYSIFEKTRADKFNLTMQLLSKWDEKHFIEARDYTREQQNIKEKKEMKKY"
     gene            425..631
                     /locus_tag="SFZ78_001808"
     CDS             425..631
                     /locus_tag="SFZ78_001808"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212632.1"
                     /translation="MNYFETLQTFIENNRIDEGIIMEHFAHMLKDILERYDCYLNSDD
                     FKKNNPLGLKKLIKLKNRCNTYIS"
BASE COUNT          525 a          111 c          162 g          440 t
ORIGIN      
        1 aattttaaaa ttgactaaat taaaaaaaat taatatataa ttctaatgaa atttaattat
       61 atattaaagg gattttaatg aaaatattaa aaaataaata ttttattctg tggatgatcg
      121 ggttttttgc aatcgtatgt ttatgtttat attttaattt agaagttaaa attattgcat
      181 ctgccatttc tgcctatgcg gtgtcaatct cattggtgtt aaatgcttat tctatttttg
      241 aaaaaacaag agcggataaa tttaatttaa caatgcagtt attatctaaa tgggatgaaa
      301 aacattttat agaggcaaga gattatacaa gagagcaaca aaatataaaa gaaaaaaagg
      361 aaatgaagaa atattaaaag aaattaaaga aaaaccagaa ttaaaaagat caattataat
      421 gatgatgaat tattttgaaa cacttcaaac ttttattgaa aataatagga tagatgaagg
      481 tattataatg gagcattttg cacatatgtt aaaagatatc ttggaaaggt atgattgtta
      541 cttaaatagc gatgatttca aaaaaaataa tcccttgggg cttaaaaaac ttataaaatt
      601 aaaaaataga tgcaatacct atatatcata atttaattta aaaaataatg tagctatatt
      661 tacaaaccta aaactaaata tagctatata tttctataaa agttaatcac tctttatatt
      721 tatcttttaa aaaacattat aattggcaaa agttatcatc aaagttaaaa aataaaatca
      781 aaaataaaaa taatttttaa ataaattgaa gtaatcttag tctattataa gattataaaa
      841 accaactaaa tgtttaagtt ttctatgtaa ctatcctcca aaccttaaag ctatagatag
      901 ttacatacta tttttatata aaaagtggtt aaagtatgat tatatagtgt tttatagaga
      961 tagttacaag gttaaaaaat ataagaatat tttaagcaaa aatgtaacta tcctagagag
     1021 taaaaaacac ttttgggata taaaatttaa aatcaaagct cgtatttatc cgccttttaa
     1081 acagcattta atcagttttt ttgggataaa acggacattt tgggatattt gggatatttt
     1141 acgctttaga ttaggaaaga taaaaagttg tttttatatg ctttaaaagc ctattatttg
     1201 ggatttttgc taaaattatt taggatagtt acatgttc
//
LOCUS       DARGEM010000211         1231 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.211, whole genome shotgun sequence.
ACCESSION   DARGEM010000211 DARGEM010000000
VERSION     DARGEM010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.211"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            168..>1231
                     /locus_tag="SFZ78_001809"
     CDS             168..>1231
                     /locus_tag="SFZ78_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8212633.1"
                     /translation="MIYFLETKEAAQAFSVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDGLLTAFNKQLISKNTLIYDEKMQKVKLSEIITTDNLKTANNSLKTS
                     NLNLTESKMNDDLAVLNLKFENLSDEIKNNAREKLKALKQVEKYIEGGLKQKRALEIC
                     GISKIEIFRIRKAYKENGILGLIDTRGLHRKDKTKLSAWMQEYALREYRTFAAGGFNF
                     TELWWQIHKEAATKENYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DKAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVSKSNSLSLTRLLW"
BASE COUNT          474 a          160 c          225 g          372 t
ORIGIN      
        1 attaatctta aaaaatttgc ccaaaaacat aatcttcatt atatgagctt atttcgcgta
       61 gtgaatggac tttattctga aaaatataaa gcaaaagcta atactaaagc cgtatttgaa
      121 aaactcttag aacttaaaat tattgataaa cttcctgagg tttgtgtgtg atttatttct
      181 tagaaaccaa agaagcagca caagctttta gtgtaagtac aggagctttg aggcttgcag
      241 taagtagaaa ctcaaataaa tacgagtggt taaaagtgga taatgaaaaa ggcggcaggg
      301 gtggtaaaaa actactattt aaaataagta aagatgggct tttaactgcc tttaataagc
      361 aattaatcag taaaaatact ttaatttatg atgaaaaaat gcaaaaagtt aaattgagtg
      421 aaattattac taccgataat ttaaaaactg caaataatag tttaaaaacc agtaatttaa
      481 atttaacaga gtcaaaaatg aatgatgatt tggctgtttt aaatttaaaa tttgaaaatt
      541 taagcgatga gattaaaaac aatgctagag aaaagcttaa ggctttaaag caagtagaaa
      601 aatatattga aggtggttta aaacaaaaaa gagctttaga gatatgtggt atttctaaaa
      661 tagaaatttt tagaattcgc aaagcatata aagaaaatgg cattctaggt cttatcgaca
      721 ctcgcggact tcatcgcaaa gataaaacca agcttagtgc ttggatgcaa gagtatgctt
      781 taagagaata tcgcaccttt gcagcaggtg gatttaattt cactgagctt tggtggcaaa
      841 tccacaaaga agcagccact aaagaaaatt atgattttat aggttttgat ttgggagagg
      901 taaaaccgct ttttagtgta aaaaccttgc aaaactttat taaaaactac tacaaagata
      961 aaccattaga acattgcatt attactcaag gtttagataa agcaaaaagt aagtttctac
     1021 ctgcacaagg taatcaaaga gagctttatg acatgaaaaa catgtgttgg caaatcgata
     1081 gctctccagc tgatattata gtaagagatg atgaaacctt agagcctttc cgccctcaca
     1141 tcttaagtgt cgttgatgtc tttagtggta tgggtgtggc tactttagta agtaaatcaa
     1201 attctttaag tttgacgcgt cttttatgga a
//
LOCUS       DARGEM010000212         1209 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.212, whole genome shotgun sequence.
ACCESSION   DARGEM010000212 DARGEM010000000
VERSION     DARGEM010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.212"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(226..585)
                     /locus_tag="SFZ78_001810"
     CDS             complement(226..585)
                     /locus_tag="SFZ78_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212634.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
     gene            complement(614..1201)
                     /locus_tag="SFZ78_001811"
     CDS             complement(614..1201)
                     /locus_tag="SFZ78_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEG8212635.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNG
                     ITLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
BASE COUNT          365 a          206 c          122 g          516 t
ORIGIN      
        1 gctaatattt tttgtctctc tattaatctc tcctatccac ctaagcacat tacccttatc
       61 atcaatctca acttctaaat ctttgtattt gttgtaaaat ttaggagcta agatttcatt
      121 aattaggatt tttataactt taaaaacttc ttgtaattct tattgtatct ttttaacttt
      181 ttacatattc taggtatttg ttgttgcttg ctgcctttgt tgcgtctatt tttcacataa
      241 tttcagacga tattcttgta taatctgctt gtttttagaa atatataaaa aattattaaa
      301 aatattgtat tcataaatac catttttaaa aacatatcct ttaaaattca tatttacatc
      361 actaatagac ttaccgttta agacaatata ttttccatta tttttattga cacccacata
      421 tacaacctta tcacaagtta tattaccctc tggacataga tttaaaattt ttatccaaaa
      481 cttttcattt tcataggtac attgctctag tggagtaaaa tcctcttgtg ctaacaaata
      541 agtactaaaa aataaaaaca ataatatatt tttaaaaatt accatttttc ataacctcct
      601 tgagtgtaaa gctttattca gcatttctcc tattaattag tccctgcatt actttatttt
      661 gacttttgtt ccacgccatc caagcttcct ttaatgtttt gtaacccgtt ttctctgcat
      721 tgatgatttt ggcaacaaaa gagtttttaa aattatcaat ccctatatta aaacataata
      781 taaccaagtc atcaaattca ttctgtgcca aggaagagtt tattgaattt tttacagcat
      841 tttcaaaggg taacaaatcg cttttaaaca atttatccgc ttcttgtaaa gtaataccat
      901 ttttatacaa atcccattca ttttgcccta taagatgtcc atatccgata gttgcacctt
      961 taacatatga agtaatttct tttccatttt gatcattata aggtttgagt cttagcttct
     1021 ctatattttt taaaagattt tgaccatcat tgcttagatg agtgattttt tcttgggtat
     1081 tgttttcact agaacttata ttattgcttt ttgtagtgtt tgtgtatttt gtgccattat
     1141 ttatatttac atctttattt tttgctttta ttttgttttc actaacccca tttaccacca
     1201 caaatttac
//
LOCUS       DARGEM010000213         1192 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.213, whole genome shotgun sequence.
ACCESSION   DARGEM010000213 DARGEM010000000
VERSION     DARGEM010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.213"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            268..1191
                     /locus_tag="SFZ78_001812"
     CDS             268..1191
                     /locus_tag="SFZ78_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8212636.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKY
                     ASKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYAAKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKDEDLKTLCNHFDVEEKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
BASE COUNT          441 a          164 c          263 g          324 t
ORIGIN      
        1 ggatgagctt attttaaatg ctaaaaaaga aataaataac gatgaaagcg agtttgacat
       61 ggaagctttt gtcgaaaaga aatattttgc tggttaaaaa ttgtttaaag cttgattaat
      121 tcaagtttta aagagttttt ataaagctct aaaacaaaga tgcccccact tcagtgggac
      181 gggggcttta ggtggatgca aggagcaaag ctcctgctca caaagcggaa tttacttccg
      241 ctgtgaagtt aagagaaagg ataaaaaatg caattagtag aacttactaa aaagttttta
      301 agcacccaaa acatctctca aaacaatctc tccgatcgtt tagggattaa taaaagctat
      361 atggtgggct atatgaaaga aggaagtagc tataaatacg cttcaaaagt agagccttta
      421 cttgaaaaat acattaaaag ctttgtggaa gaaaaaagcg tgaaagagct tcaaacacct
      481 tttattgcca ctaaagatgc aaaggcgatt aatgtaacca ttgaaagtgc catgagcaat
      541 agagaaatgg gagtaatcat tggcgaagcg gggactggaa aaagcagagc cattaaagaa
      601 tatgccgcta aaaatggaac aagagtggtg ctttttgaag caacaactga gacaagcaaa
      661 agaatgcttt tggtggggct tgaaaataaa ctcaatgtgt gttttaaagg ttctttggat
      721 gataagatta gaggcattgc tagcgagtta gcaagaactt caaaggtttt aattatagat
      781 gagagtgagc atttgccgtt tcgtgctttg gagtgcttaa gacgcatata tgatttttca
      841 aatactgctt taatcttagt aggtactaga aaacttaaaa acaatcttac aggcattgga
      901 agaaatgatt acaacgagta cggacaacta agctctagaa ttggtgcaaa atgggaatta
      961 aaaggacttt gctaccaaaa caaagaaggt ttaaaagatg aagacttaaa aacactttgt
     1021 aatcattttg atgtggagga gaaaaaggct attgatttag tttttaacct cgctcgtggc
     1081 aactttagaa aaagtgagaa gcttttaaaa agagcttgtg aatttgcaga tggaaaagcg
     1141 gttgagctta aacacataga agctgccgca tcatttttaa tgctgggcta aa
//
LOCUS       DARGEM010000214         1180 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.214, whole genome shotgun sequence.
ACCESSION   DARGEM010000214 DARGEM010000000
VERSION     DARGEM010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.214"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            33..1097
                     /locus_tag="SFZ78_001813"
     CDS             33..1097
                     /locus_tag="SFZ78_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8212637.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          464 a          154 c          185 g          377 t
ORIGIN      
        1 aagctaaaat tttagattta ggaaaagttt ttatgaaata ccctttagat tgtgaagaaa
       61 attttgaaaa atcattctta ttttggttag caaaatatgt aaaatttaaa ctcaactcac
      121 tatctaacaa agagttaaaa aatccacaag ctttagcaga agttaatttt gctcttacaa
      181 aaggtgtaaa aaatattgat gaacttgacg ctctagcaaa aaaagcaaga aatgctggtt
      241 taagtggagt taatacttat tttaatcctt taaaaaaagt atttgaatat ttaaattttt
      301 ataagcttta ctctttaaaa cagattgatg aagaactcat tgtagaagtt ttagcaagta
      361 taacaggtgc tttatcagat gcaagcaaaa aaaattaccg tattgctgtg attaattttt
      421 ttgatttttt agacaagcaa aatgaagaag atgaaaaagc acatattttc gatatcaatc
      481 ttaaaaactg ggcaggtata gcaggttcta aaggggtaaa attacctgaa tttatgagtg
      541 aagaagagct taaaaaattt cttgatgcta ttgaaaatgc agattttaaa aacaatacca
      601 tacgcaataa acttattatt aaaatcatca tttttacagg catacgggta agtgaagcta
      661 tcaatatcaa aatgggtgat attagcgaag aaaacgatct ttatatcata agaataagag
      721 ctaaaggcaa taaatatcgt gttgtaatga taaaaaaaga acttatttac gatttgctta
      781 aaaatgtaag tattaattat atgagtaaag acgccctact ttttgtcaat aaaaaaggca
      841 ctccactgac tcaatcttat gtcagtcgca tagtagaaca gcttttattt cgtgcaggaa
      901 ttcgcaaaca aaaaaatggt gctcatatgt tgcgtcatac ttttgccacc ctgctttata
      961 aaaagcaaaa agatttagtt ttagttcaag aagctttagg gcatgcaagt ttaaatacct
     1021 caagaattta cactcatttt gataatgata aattaaaact tgccgcacag gttgcaaagg
     1081 aattaagtga ctcttgaaaa ctatgctgtt tttggtaaat atttttacca tgatttaaaa
     1141 cacactttaa aagcctttaa ccacaaagaa agtaaaaagt
//
LOCUS       DARGEM010000215         1125 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.215, whole genome shotgun sequence.
ACCESSION   DARGEM010000215 DARGEM010000000
VERSION     DARGEM010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.215"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..155)
                     /locus_tag="SFZ78_001814"
     CDS             complement(<1..155)
                     /locus_tag="SFZ78_001814"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212638.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKP"
     gene            complement(152..1114)
                     /locus_tag="SFZ78_001815"
     CDS             complement(152..1114)
                     /locus_tag="SFZ78_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212639.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDTRVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTS
                     AYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMA
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     TKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILSALDVSRSDNFSRNTL
                     EKFKGVFWESELGGENGRTFVWKSLKADNKNSNDKELSLFGDEL"
BASE COUNT          351 a          211 c          138 g          425 t
ORIGIN      
        1 ggctttttat tagccatgag ccatcttcca tcgtcttgct tatagtaatt tataaagcta
       61 tctgctataa aataagggat agagcaagag tttttagcat taaactcatc aatggcttta
      121 attaaatctt ctttgcttgg agggttaaat ttcataactc atccccaaat aagcttaatt
      181 ctttgtcgtt gctgttttta ttgtcagctt ttaaactttt ccaaacaaaa gtgcgaccat
      241 tctctccgcc aagctcactt tcccaaaaaa cacctttaaa tttctctaaa gtattccttg
      301 aaaaattatc actcctactt acatcaagag ccgataaaat ctcacttgtg cttaggcttt
      361 tttcgtttaa aagctttaaa actttatcta taaaagcttc ttctttatcg ctgattttag
      421 cgttttgcaa gtcggtgttt ttaatattta gagtttttgt attgataaaa aaggcttgat
      481 ctttaattcc tgctctttct ttttgcacac taagcaatac ttcaaagcct tgttctaagt
      541 tagccacttt ttgtaaaaaa tacatgcaat cacttgagtt tctaatatga tttgagcctt
      601 taaaagctct gccatctttt gtagaatggt gtaaagccat aatggttgcc ccacattctc
      661 ttaaattcat gagtaaagac attaaagaca tcattttagt atcattatca atatctgcaa
      721 aattgcgtaa agaatcaagt acaaataaaa ccccttcata gcttcctgct acgcctttgc
      781 cttcaatcat ttctaaaagc tcataagctg aagtttttaa gcttgatctg tgaatataag
      841 tgaatttgct ttcatttaaa ataagttcac caaaacctct ttcatttaaa acatttaaag
      901 gattatccat gtcaacataa acgatgcttt taacccttgt atctttgcaa agtgttttag
      961 aaatggcggc acttaaataa ctttttccac ttccaccatt tgcataaata atagttattg
     1021 cttttttaac taaaaaatca gggattaaaa actctaattt ctcgtttaaa tctttatttt
     1081 ttaacttaaa ctcatttaaa aaatccaaat tcatcttttt tcctt
//
LOCUS       DARGEM010000216         1122 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.216, whole genome shotgun sequence.
ACCESSION   DARGEM010000216 DARGEM010000000
VERSION     DARGEM010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.216"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            56..958
                     /locus_tag="SFZ78_001816"
     CDS             56..958
                     /locus_tag="SFZ78_001816"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8212640.1"
                     /translation="MSYLSVVPAMIDKGLDTLKLQENTDYELSSINNHYLTLANSTVG
                     VDNTNARARNEITLKNDKDKEEIYILAQKDYKEEIGNNYEQTIKNNKTSEVGALYTEF
                     ITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLNVGISNEVNIGQNHEEKIG
                     NDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTNQSIKFYSKQDLSIETNEY
                     FKAEADDSISFKAKKNCSFTADNVNTMANQESVLTAQKQIVSRVGNTTITQTKDKIIL
                     QVGTTQVIIDSKGLRVKGGDLRAD"
     gene            1024..>1122
                     /locus_tag="SFZ78_001817"
     CDS             1024..>1122
                     /locus_tag="SFZ78_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8212641.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVK"
BASE COUNT          512 a          146 c          172 g          292 t
ORIGIN      
        1 aacaatgccc caatataatt atccaagata taaaagagaa atcgctacaa atgcattgag
       61 ttatttaagc gtagttcctg ctatgattga taaaggttta gatacattaa aacttcaaga
      121 aaatactgat tatgaattaa gttctataaa caatcattat cttactttgg ctaattccac
      181 agtaggagtg gataacacca atgcaagagc aaggaatgaa attaccctaa aaaacgacaa
      241 agacaaagaa gaaatttata tcctagcaca aaaagattat aaagaagaaa taggtaataa
      301 ttatgagcaa accataaaaa ataataaaac ttcagaagtg ggagccttat ataccgaatt
      361 tattacttta ggacatatgc aaaatatcat aggttttaaa aatgtcaatg taggagctga
      421 atatttagaa aataccctac tttctaaaga tactaatgtg ggcttaagta atactttaaa
      481 tgtaggaatc agcaatgaag tcaatatcgg acaaaaccac gaagaaaaga taggaaacga
      541 caaaagagta ataatcaata acaatctaga gcaagatatc aaaaatgatt ttatccaaag
      601 aataggacat aacaaaaatg aaaccataaa aggttcttat gtgcttcaaa ccaatcaaag
      661 tataaaattt tattccaaac aagatctaag catagaaaca aatgagtatt tcaaagctga
      721 agctgatgat tctattagtt ttaaagccaa gaaaaattgc tcttttacag ctgataatgt
      781 aaatactatg gcaaatcaag aaagtgtttt aacagcacaa aaacaaatcg tttctagggt
      841 aggaaataca actattacac aaacaaaaga taaaattata ctacaagtag gaacaacaca
      901 agtgattata gatagcaaag gtttaagagt aaaaggaggt gatttaagag cggattaaaa
      961 gcaattttct taaaattaaa actaaaatca taaaaaaccc aatttacaaa gaaaggaaaa
     1021 acaatgaaaa ccttagaaga tatcaaagct atgagctatc aagaaaaaga tgaattagaa
     1081 gatttagttc ttgaaattat agataataat gatttagtta ag
//
LOCUS       DARGEM010000217         1119 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.217, whole genome shotgun sequence.
ACCESSION   DARGEM010000217 DARGEM010000000
VERSION     DARGEM010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.217"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1119
                     /locus_tag="SFZ78_001818"
     CDS             <1..>1119
                     /locus_tag="SFZ78_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212642.1"
                     /translation="MLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNL
                     KDLSSSEICTKVYLEDLEEEIQDKKQDKDLNLFYHTDKNNLCIEFINTLKELAKDSED
                     ITTLDELIENIDPDDISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFIN
                     ELLEHIKKLAEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSAS
                     EYYEFAQRDYGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIIDKKEIIDLSGFGLYL
                     GSDESNIASNLAYKITLSEEIKSIENIFSEIFLNPEQKDKGYKNTPNDSKSSNLPAFI
                     STQKLSNLYLKNNAILKNLQEDIKQFIYFSYIESPNFN"
BASE COUNT          442 a          141 c          171 g          365 t
ORIGIN      
        1 aaatgctatc taaaaatcaa atattgacta tggaaatact agaaatttta aaacaaactt
       61 gtgataatca caataatata gaaataaata tccataccct taatgagctt gatgctggac
      121 aaaatgtaaa tttaaaagat ttatcaagca gtgaaatttg cactaaagtt tatttagaag
      181 acttagaaga agaaattcaa gacaagaaac aagataaaga tttgaatctt ttttatcata
      241 cagataaaaa taatctttgt atcgaattta tcaatacttt aaaagaacta gccaaagatt
      301 ctgaagatat aacaacctta gacgagttaa tcgaaaacat tgatcctgat gatataagca
      361 gtgagaaatt tgatgatttt aagaaaaaag ttttagaaaa gattggaaat gtcatagaat
      421 cggatttttt caaaaatagc ataagtccca ctttaaaaaa tacttatgaa aaatttatca
      481 atgagttgtt agaacacatt aaaaaacttg ccgaagaaaa agaatatgaa aaaattaaaa
      541 tcatactaag tgctatagcg ggtgttgcaa tagccacagt ggtagctgtt cttacaggtg
      601 gggcaggatt agctattttg gctgctggtt tattttcttt aatgggttct gcaagcgagt
      661 attatgaatt tgctcaaaga gattatggca cacttttaac gcctttagcc gcatttttag
      721 ccactagatg tgctatgttt attcattata ttaattctcg cttgttatct tgtgttttaa
      781 ttattgataa aaaagaaatt attgatttaa gtggttttgg attatatctt ggaagcgatg
      841 aaagcaatat cgcttcgaat ttggcttata aaatcacttt aagcgaagaa ataaaaagca
      901 ttgaaaatat ttttagtgaa atctttttaa acccagaaca aaaagacaag gggtataaaa
      961 atacacccaa tgattcaaaa tcgagcaatt tacccgcttt catttcaacg caaaaattat
     1021 ctaatttgta tttaaaaaac aatgctattt taaagaattt gcaagaagat attaaacaat
     1081 ttatttattt ttcctatata gaaagtccaa attttaact
//
LOCUS       DARGEM010000218         1116 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.218, whole genome shotgun sequence.
ACCESSION   DARGEM010000218 DARGEM010000000
VERSION     DARGEM010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.218"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            176..523
                     /locus_tag="SFZ78_001819"
     CDS             176..523
                     /locus_tag="SFZ78_001819"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG8212643.1"
                     /translation="MKKKKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSED
                     KFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHC
                     VNSISLEFVKTKD"
     gene            538..>1116
                     /locus_tag="SFZ78_001820"
     CDS             538..>1116
                     /locus_tag="SFZ78_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG8212644.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FIFFHFAATIEKIVGKLILHVFSRIAQVFIVAM"
BASE COUNT          364 a          110 c          201 g          441 t
ORIGIN      
        1 aagagtgaaa ttttatagtt atattttttt catataaaat atcttgaagt tcttgaaaaa
       61 attctttttg catttaaaac tttcttgaaa attataaaaa tttatcattt aaaattgaaa
      121 atttaattat ataatataaa aattatttta caagggtaga tcatgaaaga attaaatgaa
      181 gaagaaaaaa aaagtaattt taaataaagg aacagaagct ccttttagtg ggaaatataa
      241 tgatttttat gaaaaaggaa tctatcaatg caagcaatgt ggagcttcgc tttataaatc
      301 cgaagataaa tttaaatcag gttgtggatg gcctagcttt gatgatgaaa taaaaggggc
      361 tgttaaaaga attcctgata aagatgggat tagaaccgag attgtatgtg caaattgcaa
      421 tggacattta ggtcatgttt ttgaaggaga aggattttct gctaaaaatg taagacattg
      481 tgtaaattct atttctttgg aatttgtaaa aactaaggat tgatagtgtt ttctagtatg
      541 ggttctgagc tttatttgat gttttttgct gcaattactt tacttgctat attaaatcct
      601 tttggtaatt taactcaatt tttggctatg agtgatggat tgcctttaat gcttcgaaaa
      661 aaacttttta gaactattct ctatacagct tttactatag ttttggtgtt tttattatca
      721 ggacctttat ttatgaacta tatttttaga gtttcattgg atgatttaag ggtttctggt
      781 ggtttggttc ttattataat ggctattaaa aatttacttt tttcaacaaa aattgcaact
      841 aaggatttta gttcttatca agatatggat gataaggaaa ttttaagaca gagtttaata
      901 cctatggcat ttcctatgct tgttgggcct ggaactttag ctagcgttat tgttatagcc
      961 gaagatggtg ggcttgatgt tgctcttggc ggagtaatga tagcttttat ttttatgttt
     1021 atattttttc attttgcagc tactatagaa aaaatagttg gaaaattgat tttacatgtt
     1081 ttttctcgta tagcacaagt atttattgtt gctatg
//
LOCUS       DARGEM010000219         1085 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.219, whole genome shotgun sequence.
ACCESSION   DARGEM010000219 DARGEM010000000
VERSION     DARGEM010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.219"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            416..>1085
                     /locus_tag="SFZ78_001821"
     CDS             416..>1085
                     /locus_tag="SFZ78_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212645.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFN
                     IDLKD"
BASE COUNT          458 a          143 c          141 g          343 t
ORIGIN      
        1 aaataccaat accatagtat taaagacaaa taatataaaa atcatattct tagataaagt
       61 aaatttacaa gatttgcaag ataattctaa caatacttct ttcatctcta tgtcaaattt
      121 gatccatatt tatgataatc attgtgatat ttttgcaaaa gatagaagtg ttttggatat
      181 aaaggacata gaagaaaaat atcaaataga ttttaaaagt ttagatataa aaatcttcct
      241 aaactccacc ctccttacag gctcaaatga acttcctaat aatccttttt actttggaga
      301 attagatcaa gataatacta taaaacaaga tacacctagt tattattttt ctcctaaaga
      361 tgaaagcagt ggcaaaggaa gacttagtat cttttataaa aatgatgaac tttgtttgct
      421 taattattct atattagaaa attctttaaa tattaaatta gaatgtttaa gcaaacaaag
      481 cttagagtat aaagacttaa tttcaaacac tttaaaagaa caaaaaacca cacaagtaga
      541 taaaaaacaa gctatagcta aacttcatgc tcttttagaa aatcaaaacc tagaatgtat
      601 ccatggaggt aaagtcatac ttaaatcaaa caaaggaaaa acttttaaag atgatggtgt
      661 gcctataatg ctagaaagtg atttattaaa ctctagtata gtagcttgtc ctaatactat
      721 agcaggtgta agtgttcctt gtaccaaagt tgttaatgta aaaggatcct tatctcaaaa
      781 gaaagtcaat aatgaatatg taatcttaca agaactcatc tcagcttgta aaacagataa
      841 aggctttgct ttaaaagtaa gctttactcc tactaagttt aaatttgatc acagctttga
      901 tcctaaagag ggcttaggag aacaaagtaa aaatcaaata gagttaaaag aacctataat
      961 aagacttcat tataaaagtg atagatttca aaaagataat ttacctatct ataatctttt
     1021 aatcaataat gaaaaaaaag aacaagataa ggctttaaat gaatttaata tagatttaaa
     1081 agatt
//
LOCUS       DARGEM010000220         1066 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.220, whole genome shotgun sequence.
ACCESSION   DARGEM010000220 DARGEM010000000
VERSION     DARGEM010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.220"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..993
                     /locus_tag="SFZ78_001822"
     CDS             <1..993
                     /locus_tag="SFZ78_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEG8212646.1"
                     /translation="ILGKQCEKFENNFAKYCGVKHCIGVANGLDALRLIIKAYNFKEN
                     DEIIVPANTYIASILAITDNKCKPILIEPDINTYNINPDLIEEKITKKTKAIMVVHLY
                     GQVCDMEKIQLLANKYNLKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYPGKNLGALG
                     DAGCICTNDDNFASKIRALANYGSHKKYENLYIGLNSRLDEIQAAFLDIKLKYLDEDN
                     NKRKNIANFYLQNIKNENIILPSNKFDHVWHLFIVKTKLRDELQHYLNNHDIQTIIHY
                     PIPPHKQKCYKDLNHLQLPVTENIHQEVLSLPISPTMKENDFKKVADILNKWKV"
BASE COUNT          427 a          143 c          152 g          344 t
ORIGIN      
        1 atacttggaa agcaatgtga aaaatttgaa aataattttg caaaatattg tggggttaaa
       61 cattgcatag gcgttgcaaa tggacttgat gctttaagat tgatcataaa agcttataat
      121 tttaaagaaa atgacgaaat catagttccc gcaaatacat acatagcatc aattttagct
      181 ataactgata ataaatgcaa acctatactg atagagcctg atatcaatac ttacaacata
      241 aatcctgatt taatagaaga aaagatcaca aaaaaaacta aagctatcat ggttgttcat
      301 ctttatggtc aagtttgtga tatggaaaaa attcagttgt tagctaataa atacaattta
      361 aaaattatag aagattgtgc tcaagcacat ggcgctattt ataaagataa acgagttgga
      421 aatttgggag atgccgccgg tttttctttt taccctggta aaaatttagg tgctttaggg
      481 gatgctgggt gtatttgcac caatgatgat aattttgcat ctaaaattag agctttagca
      541 aactatggct ctcataaaaa atatgaaaat ttatatatag gattaaattc tagattagat
      601 gagatacaag ctgctttttt ggatataaaa ttaaaatatt tagatgaaga caataataaa
      661 agaaaaaata tagcaaattt ttatctacaa aatataaaaa atgaaaatat tatattacct
      721 agtaataaat ttgatcatgt ttggcatcta tttatagtca aaacaaagct tagagatgaa
      781 ttacaacact atctaaataa tcatgatatt caaactatta tacactatcc tatccctcct
      841 cataagcaaa aatgctataa agatttaaat catttacaac tacccgtaac agaaaacatc
      901 catcaagaag ttttgtcatt acctatatcg ccaacaatga aagaaaatga ttttaaaaaa
      961 gtggctgata tattaaacaa atggaaagtc tgatagatcg ctctccattt tattcgctta
     1021 ttctttaaaa aatttcaaga aattttttat agtattccca actatt
//
LOCUS       DARGEM010000221         1059 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.221, whole genome shotgun sequence.
ACCESSION   DARGEM010000221 DARGEM010000000
VERSION     DARGEM010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.221"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1059
                     /locus_tag="SFZ78_001823"
     CDS             <1..>1059
                     /locus_tag="SFZ78_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8212647.1"
                     /translation="LYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETICTWLNS
                     NEFRDRYLSTKHPYPPLINPNFIEIDSSRHCAELAWDLNLPLPKHYKFIYISPHGVGA
                     AAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTIAQYAINISEINLPYFDK
                     YLSLLDFNSKIICGVRDPIGLLKHSWGRDWSKVLRNYPPEFNLTYDWRYYINYLTHQN
                     HKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINFNFTPP
                     HKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDRTSSIPII
                     LDRKHINHEKIDIIQEII"
BASE COUNT          397 a          172 c          119 g          371 t
ORIGIN      
        1 actctatata aaaaataacc taactccaac cctagctcaa attcttttac aagctttaaa
       61 aaattcgaat aatgaaaaat tttttacctt tgttttgaaa aatattgaaa caatttgcac
      121 ttggctcaat tctaacgaat ttagggatag atatttatca acaaaacatc cttatccacc
      181 tttaatcaat cctaatttta tagaaataga ttctagtcga cattgcgcag aattagcttg
      241 ggatttaaat ttacccctac ctaaacacta taaatttatc tatatttctc cacatggcgt
      301 tggagcagca gcatttttaa gataccttaa tcaatgttgc gatgtaactt gttttgcctc
      361 ctgggtttta ccacctgata gcaaagagag atattgtatt aattacatgt gtctaaatga
      421 taatacaatt gctcaatatg ctattaatat atcagaaatt aatctacctt attttgataa
      481 atatctatct ttattagatt ttaattctaa gattatttgc ggagttcgag atccaatagg
      541 acttttaaag catagctggg gaagagattg gagtaaagtt ttaagaaact atccccctga
      601 atttaatcta acttatgatt ggcgttatta catcaactat cttactcatc aaaatcataa
      661 aattaaaatc gatataaatg aactacaaca aggagttttt atcatctctt atttattaaa
      721 atattttaac aaagacaatg tatactatct tgatatggaa gaaatccgcc aatcaaaggc
      781 cttcgatacc atgaatttac ttgctataaa ttttaatttt accccccccc ataaagataa
      841 attagattta tttaaaatta aagaatttag aggttatatt cgctatcttt ttcctattac
      901 actttatgca aattctaaag atattaataa caccttttat cttaatactc ctaaaaataa
      961 taaaaatttc aatattgata gaacttctag cattcccata attttagaca gaaaacatat
     1021 caatcatgaa aaaatagaca taatacaaga aattataaa
//
LOCUS       DARGEM010000222         1050 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.222, whole genome shotgun sequence.
ACCESSION   DARGEM010000222 DARGEM010000000
VERSION     DARGEM010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.222"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            336..901
                     /locus_tag="SFZ78_001824"
                     /pseudo
     CDS             336..901
                     /locus_tag="SFZ78_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            877..1029
                     /locus_tag="SFZ78_001825"
     CDS             877..1029
                     /locus_tag="SFZ78_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8212648.1"
                     /translation="MQEYTFALKIGEDYLISPMKINPNKTLFSYCDIESAQELSLLKK
                     QILLKL"
BASE COUNT          432 a          139 c          139 g          340 t
ORIGIN      
        1 ttaaaaaata gttttaatgg agttaaattg atgttttttt aattttaaaa ataaaagctc
       61 aacaaaaaaa gaagaagtaa aaaagtttta gaagctccat atcttcaata aaatgaactt
      121 gaagaaaaat taaaaaaaat aaacatcaag ccaaaattaa ttataggctt tgtgtcaatc
      181 aacttaatct agcgatcata ggaaataaga ttcaaaattc tataaatgag caatgtgata
      241 tcatcttaag cagtgctact gatttattat gcaaccttga ttctaactca aacattgaaa
      301 acagtcctta taaacaaaat atccaaggaa taagcttgat actttttagt gaagatatga
      361 tagaaaatct ttgcacaaat aaaatcaagc tttttagtga tataaaagat tatacagaaa
      421 gaaaaaaact gatagaaaaa gaagttttat ttataaatat accttttgaa gcacactgca
      481 taaatacttt gcattattta atttatgatg gtttaagtca aagcgaaagt tctcttttag
      541 aacttttgta caaacacaac ccctatcctt gtgctttagt agggggtggg tctagcggaa
      601 acatggactt tagcggagca tttatatttt ataacggaga aatattaaaa atcaagcttt
      661 aagcatacat gttcaattta aacctaaata ccgttttaat ttaatgaagt ctcaaaattt
      721 caatcctcaa agcaacatta cttttaccat acttgatgta agcttatatg ataaaaccgt
      781 acgcgaattt attaataaaa aacctttcaa tccatcaacg cggttgaagt tttatgtaat
      841 tattttaact gcacttttga agaacttaaa aataaaatgc aagaatatac ttttgcttta
      901 aaaattggag aagactatct tatttcccct atgaaaatca acccaaataa aacattattt
      961 agttattgtg atatagaaag cgctcaggaa ttaagcttgc ttaaaaaaca aattttattg
     1021 aagctataaa aaaagattat gaaaaatttt
//
LOCUS       DARGEM010000223         1040 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.223, whole genome shotgun sequence.
ACCESSION   DARGEM010000223 DARGEM010000000
VERSION     DARGEM010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.223"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1040
                     /locus_tag="SFZ78_001826"
     CDS             <1..>1040
                     /locus_tag="SFZ78_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8212649.1"
                     /translation="KNKIYTKYEKKFNINIFTPYLLKFCKPLKDDYKFILFSYGVSGH
                     WAFKSFLKYCELDDFVLYWNNYSYYKEYKNFNKKNYYVEIAWYQSMQPKYKHISKILN
                     KNKPVVILTRDPISRLKTMVNHGSYKIEELGKNELKNFYINEDIFENLDRIRYTDKNG
                     HNANLKKPDLSSIYFIVNEELSFSYFSNINLIKNKNILYVDTKSISKDNAFATIKTLA
                     KELNFKEPNDNDEYKFTQKFWNELYYLLPYRLIVNNDILIIVSDENKVFLDNDKHYNE
                     IKDDLIDIKKELVNTKSKLFDKISINIENKNWIIIKDDKALINDLREYFEKFMIILEK
                     KANERLENMVKE"
BASE COUNT          465 a           80 c          134 g          361 t
ORIGIN      
        1 aaaaataaaa tatacactaa atatgagaaa aaatttaata tcaatatttt tactccttat
       61 ttattaaaat tttgtaaacc tttaaaagat gattataaat ttatattatt tagctatggt
      121 gtaagtgggc attgggcttt taaaagtttt ttaaaatatt gcgaattaga tgactttgtc
      181 ttatattgga ataattatag ttattataaa gaatataaga attttaataa aaaaaattat
      241 tatgtagaaa tagcttggta tcaaagtatg cagccaaaat ataagcatat aagtaaaatt
      301 ttaaataaaa ataagcctgt tgtaattttg acaagagatc ctatatctag attaaaaaca
      361 atggttaatc atggttctta taagattgaa gaacttggta aaaatgaatt aaaaaatttt
      421 tatataaatg aagatatatt tgaaaattta gatagaataa gatatacaga taaaaatgga
      481 cataatgcta atcttaaaaa acctgattta tcatctatct attttatcgt aaacgaagag
      541 ctaagtttta gctatttttc aaatataaat ttgattaaaa acaaaaatat attatatgta
      601 gacacgaaat caatttcaaa agataatgca tttgccacta taaaaactct tgctaaagag
      661 cttaatttta aagaaccaaa tgataatgat gaatataaat ttacgcagaa attttggaac
      721 gaattgtatt atttactacc ttatagactt attgtcaata atgatatttt gataatagta
      781 tctgatgaaa ataaagtatt tttagacaat gataagcatt ataatgagat aaaagatgat
      841 ttaattgata taaaaaaaga acttgtaaat acaaaaagca agttatttga taaaatttca
      901 attaatatag aaaataaaaa ttggatcatt attaaagatg ataaagcttt aatcaatgat
      961 cttagagaat attttgaaaa atttatgatt attttagaga aaaaagcgaa tgaaagactt
     1021 gaaaatatgg taaaagaaga
//
LOCUS       DARGEM010000224         1021 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.224, whole genome shotgun sequence.
ACCESSION   DARGEM010000224 DARGEM010000000
VERSION     DARGEM010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.224"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..928)
                     /locus_tag="SFZ78_001827"
     CDS             complement(<1..928)
                     /locus_tag="SFZ78_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8212650.1"
                     /translation="MSILTPCFNHEKYVSYFLQSVLEQSFSDFELIIVDDCSSDNSTK
                     EIQKFKDPKIKLIKHEFNKGINATLNTAFENSNGEYIVFCASDDILEKNALEIIYKTF
                     KDNDIIAVYPNLICIDENNEILGNLYPLKQRNKVELLYYLFMRYNCLTSVGLSLKRDV
                     FEKLYPLPNSMCNYQDMKMHIDILNIGEIKILETQLIRYRRTRDKTNISAHNSITTTR
                     ENLETEMLLDTYLKFDNIFLLEQIFHKEVNKTNIKPYQETLPFFLGIMALESDNIYKK
                     YWGYHKIMEFYKNDANAKILYEKYNFTFKDYLQ"
BASE COUNT          337 a          131 c          109 g          444 t
ORIGIN      
        1 attgtagata gtctttaaat gtaaaattat atttttcata taaaatttta gcattggcat
       61 catttttata aaattccatt attttatgat aaccccaata ttttttatat atgttgtcag
      121 attctaaagc cattattcct aaaaaaaaag gcaatgtctc ttgataaggt tttatatttg
      181 ttttatttac ttctttatga aaaatttgct ctaataaaaa tatattatca aattttaagt
      241 aagtatctaa gagcatttct gtttctaggt tttctcgagt tgttgtgatg ctattatgag
      301 cacttatatt tgttttgtct ctagttcttc tgtatcttat aagttgtgtt tcaagtattt
      361 taatttcgcc aatatttaat atatcaatat gcatcttcat atcttgatag ttgcacattg
      421 aatttggtaa aggatataat ttttcaaaaa catctctttt taaagataat ccaactgatg
      481 ttaagcagtt gtatcgcata aataaataat ataataattc taccttattt ctttgtttta
      541 atggatataa gttccctaaa atttcattat tttcatctat acaaatcaaa tttggatata
      601 cagctataat atcattatct ttaaatgttt tatagataat ttctaaagca tttttttcta
      661 atatatcatc actcgcgcaa aatactatgt attctccatt tgagttttcg aaagctgtat
      721 ttaatgtcgc atttatacct ttgttaaatt catgttttat aagttttatt tttggatctt
      781 taaatttttg aatttctttt gtgctattat cacttgaaca atcatctact ataatgagct
      841 caaaatcact aaaactttgc tctaaaacac tttgtaaaaa ataactcaca tatttttcat
      901 gattaaaaca tggggttaga atggaaattt tgccattact ttatccttgt aatattataa
      961 cttatttaat ttttgagcga taattttaaa tccatcaata cctgaaatta taaaatagtt
     1021 t
//
LOCUS       DARGEM010000225          987 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.225, whole genome shotgun sequence.
ACCESSION   DARGEM010000225 DARGEM010000000
VERSION     DARGEM010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.225"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>987
                     /locus_tag="SFZ78_001828"
     CDS             <1..>987
                     /locus_tag="SFZ78_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212651.1"
                     /translation="LFILALSTIDLSEELKVYKVVLFDCVAKDLEIQIAMIFDQQSIL
                     EYLSLYEMFISSHYYLKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQN
                     IPSMLESIPFQRILSQRKNKFDNAIVVSAGPSLAKQLPLLKACQDKAVIFCADGALSM
                     LEKEGIVPDYVLNIDFKDCHAMKFFQNKENLKQSIIALECATHPNVARSLNAENCMIV
                     LRNKALYQRFNLNDFGYIDTGTHVSHFSYALALALGFKNIIMIGQDLAFDEEGNSHSK
                     GFDFGEKFEEEHKKYKLKIPAYAGKGEVLTHITWNDYRIKLEYLFACNSKEA"
BASE COUNT          335 a          128 c          172 g          352 t
ORIGIN      
        1 actttttatc ttggctttaa gcacgataga tttgagtgaa gagttgaaag tttataaggt
       61 tgtattattt gactgtgttg caaaggattt agaaattcaa attgctatga tttttgatca
      121 gcaaagtatt ttagagtatt taagtttata tgaaatgttt attagctcgc attattatct
      181 taaatactat gaaacttcta ttttatcttt gaatgaactt tgtattaaaa gtgcaagtgt
      241 agcaataagg aatgcagata ttacatgttt tttacctttg ctaacacatg gacagttttt
      301 acaaaacatc ccttctatgc ttgaaagcat tccttttcaa agaatcttaa gccaaagaaa
      361 aaacaaattt gataatgcta tagtagtttc tgcaggacct agtttagcta aacaactccc
      421 tttacttaaa gcttgtcaag ataaagcagt gatcttttgt gctgatgggg ctttaagtat
      481 gcttgaaaaa gaaggtatag tgcctgatta tgttttaaat atcgatttta aagattgtca
      541 tgcaatgaaa ttttttcaaa ataaagaaaa tttaaaacaa agcattatcg ctcttgagtg
      601 tgctacgcat cctaatgtcg cgcgtagttt aaatgctgaa aattgtatga ttgttttaag
      661 aaataaagcc ctttatcaac gctttaacct taatgacttt ggctatatag atacgggtac
      721 tcatgtaagt catttttctt atgctttagc tttggcttta ggatttaaaa atattattat
      781 gatagggcaa gatttagcct ttgatgaaga aggaaattca cactcaaaag gttttgattt
      841 tggggagaaa tttgaagaag agcataaaaa atataaactt aaaatccccg cttatgcagg
      901 taaaggtgaa gttttaaccc atataacttg gaatgattat cgtataaaac ttgaatatct
      961 ttttgcttgc aacagtaaag aagctaa
//
LOCUS       DARGEM010000226          964 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.226, whole genome shotgun sequence.
ACCESSION   DARGEM010000226 DARGEM010000000
VERSION     DARGEM010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.226"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>964
                     /locus_tag="SFZ78_001829"
     CDS             <1..>964
                     /locus_tag="SFZ78_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212652.1"
                     /translation="ALSTIDLSEELCSGKIYLIDIKEERVDIQLLILFDMKDMFEYLS
                     LYEMFVNNVYYKKFYEDIWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSM
                     LESIPFQRILNERKNKFENAIVVSAGPSLTKQLPLLKAYQEKAVIFCADGALSMLEKE
                     GIVPDYVTNLDFTDLAMKFFQNKENKTSLNVLSCATHLSLVHFLDNKSVVLRDDPLYQ
                     RFNLNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKF
                     SGEENIDKLKVPAYAGKGEVLTHITWNDYRIKLEYLFACNEQKA"
BASE COUNT          339 a          118 c          167 g          340 t
ORIGIN      
        1 tagctttaag cacgatagat ttgagtgagg aactttgtag tggaaaaatt tatcttatag
       61 atatcaaaga agaaagagtg gatattcaac tacttatact ttttgatatg aaagatatgt
      121 ttgagtatct aagtttatat gaaatgtttg taaataatgt ttattacaaa aagttttatg
      181 aagatatttg gcataaagca gatgagcttt gtgaaaaaaa tattaaagtt gtgataagaa
      241 atttaaattc cagtttatgt atcggttttg agtgttattc tcatctttta caaaacatcc
      301 cttctatgct tgaaagcatt ccttttcaaa gaatcttaaa tgaaagaaaa aacaaattcg
      361 aaaatgctat agtagtttct gcaggacctt ctcttactaa acaacttcct ttacttaaag
      421 cttatcaaga aaaagcagtg atcttttgtg ctgatggggc tttgagtatg cttgaaaaag
      481 aaggcatagt gcctgattat gtgacgaatt tagattttac tgatctagca atgaaatttt
      541 ttcaaaataa agaaaataaa acttctttaa atgtgctttc atgtgctact catcttagct
      601 tggttcattt tttagataat aaaagtgtag ttttaagaga tgacccttta tatcaacgct
      661 tcaatcttaa tgactttggt tatatagata caggcactca tgtgagtcat ttttcttata
      721 ctttagcttt ggctttagga tttaaaaata ttatcatgat aggacaggac ttagcctttg
      781 atgaagaagg aaattcacac tcaaaaggtt ttgattttgg agagaaattt agtggtgaag
      841 aaaatataga taaacttaaa gtccctgcct atgcaggtaa aggtgaagtt ttaactcata
      901 taacctggaa tgattatcgt ataaaacttg aatatctttt tgcttgcaat gaacaaaaag
      961 caaa
//
LOCUS       DARGEM010000227          954 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.227, whole genome shotgun sequence.
ACCESSION   DARGEM010000227 DARGEM010000000
VERSION     DARGEM010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.227"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(160..236)
                     /locus_tag="SFZ78_001830"
     tRNA            complement(160..236)
                     /locus_tag="SFZ78_001830"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(200..202),aa:Arg,seq:gcg)
     gene            complement(289..>954)
                     /locus_tag="SFZ78_001831"
     CDS             complement(289..>954)
                     /locus_tag="SFZ78_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8212653.1"
                     /translation="LNLETWLFNDEKIYKLQDGEFKLSSIEEFSNFIKSILEDFKVQN
                     THFQNLLEHKEGIILKGGFVKNFYKKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQY
                     KKHLKILNLSISILSKNTKEHLARVDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLN
                     LIVGFFGMNTNNLFFKDSPYGTLYIFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKK
                     QTK"
BASE COUNT          349 a          113 c          118 g          374 t
ORIGIN      
        1 ttatttttga attttaaaat ttaacatata ctataacata tacttttaaa attgtcaaaa
       61 ttgattattt gagattattt tagaagcttt caaacattgc tatatcatgc tttagatgat
      121 tatttcagat gattcaagat tatttaagaa aagaagtgat ggtgcgctca agaggattcg
      181 aacctctggc cttttgaacc gcaatcaaat gctctatcca gctgagctat gagcgcaaaa
      241 ataagttaaa attatatata aatattctta aaataagcaa aattttgctt attttgtttg
      301 ttttttagct tttttacctt catctaaatc aaattcttta gtcttttttg aataataaaa
      361 tataaaacct acaatcaaaa tacagcaaat caaagaaaaa atataaagtg taccataagg
      421 gctatctttg aaaaaaagat tattagtatt cattccaaaa aatcctacga tcaaatttaa
      481 aggcaagaaa atagaagaaa gtatacttaa aagataaata cttttattca ttttttcatt
      541 tttaattgca tttgttaatg tataaagagt atcaactctt gctagatgtt ctttggtgtt
      601 tttacttaag atgctgatgg ataaatttaa aatttttaaa tgttttttat attgtgcttg
      661 ttcactaagc aaaagattga aagcttcgct tagaagatta atttgcttta gatttttgtt
      721 gattttttgt cttaacacaa aggatttttt gtaaaaattt ttaacaaaac caccttttaa
      781 gataatacct tctttgtgtt ctaaaaggtt ttgaaaatga gtattttgta ctttaaaatc
      841 ttctaaaatg gatttaataa aatttgaaaa ttcttctatg ctagaaagct taaattctcc
      901 atcttgaagt ttataaattt tttcatcgtt aaaaagccaa gtttccaaat ttaa
//
LOCUS       DARGEM010000228          950 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.228, whole genome shotgun sequence.
ACCESSION   DARGEM010000228 DARGEM010000000
VERSION     DARGEM010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.228"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..497
                     /locus_tag="SFZ78_001832"
     CDS             <1..497
                     /locus_tag="SFZ78_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212654.1"
                     /translation="KISISFKIILIFIFSFSLSMMTLLFKDFIEYKQNKEIQNKNFII
                     QEEISKLKQDKQKLLTNIQDLNFTLSNKISSTQQQFHILSTITKEINLDKNKAIILNQ
                     IISWLNSNELKITNLEFEQTKIILSFIDENHFKRALENLNSTFKFLDKNEETLNIILE
                     VIHE"
     gene            490..>950
                     /locus_tag="SFZ78_001833"
     CDS             490..>950
                     /locus_tag="SFZ78_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212655.1"
                     /translation="MNKIEVFLQNLNSREKFLFISFICLCALFLAFKIHDRFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLTINEIKFSQENKNFIHYNYVSLSLNGNFKDLLNFIQNLENLP"
BASE COUNT          423 a          123 c           79 g          325 t
ORIGIN      
        1 taaaaatatc tatttctttt aaaattatat taatatttat ttttagcttt agtcttagca
       61 tgatgacttt attatttaaa gattttatag agtacaaaca aaataaggaa attcaaaata
      121 aaaattttat catacaagaa gaaatttcta aactaaaaca agataagcaa aaattattaa
      181 caaacataca agatttaaac tttactcttt ccaataaaat atcatctaca caacaacaat
      241 ttcatatttt atccaccata acaaaagaaa tcaatttaga taaaaataag gcaatcattc
      301 taaatcaaat catatcatgg cttaattcca atgaacttaa aatcacaaat cttgaatttg
      361 aacaaacaaa aatcattctt tcttttatcg atgaaaacca ctttaaaaga gcattagaaa
      421 atctaaattc tacttttaaa ttccttgata aaaatgaaga aacattgaat atcatattag
      481 aagtcataca tgaataaaat agaagtattt ttgcaaaatt taaattctag ggaaaaattt
      541 ctttttattt cttttatctg cctttgtgct ttgtttttag cttttaaaat tcacgatcgc
      601 tttttggaag atatttttca aaaaacatta gtagaacata attaccttgc attaaatgaa
      661 gcaaaaatag aaaattcaca tcttaaagaa atagagacaa agctaacaaa acagataaaa
      721 acagaggaag aaaaattaaa atactataaa gaaaaattgc atttattttc ttatgataaa
      781 gattttttca ataaaaaaat caataattta tccaaaaatt taaccattaa tgaaataaaa
      841 ttttcccaag aaaacaaaaa ttttatccac tataattatg tttctctaag tttaaatggc
      901 aactttaaag acttactcaa ttttatacaa aatttagaaa atcttcctat
//
LOCUS       DARGEM010000229          941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.229, whole genome shotgun sequence.
ACCESSION   DARGEM010000229 DARGEM010000000
VERSION     DARGEM010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.229"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..878)
                     /locus_tag="SFZ78_001834"
     CDS             complement(<1..878)
                     /locus_tag="SFZ78_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8212656.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTNTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEE"
BASE COUNT          294 a          137 c          125 g          385 t
ORIGIN      
        1 aactcttctg ttaaattttt tgcaaactca tcatttttga tattttttaa agtattttta
       61 gcatctgtgg tatcttcttc tatttttgat ttaactttat cgtttttttc gtgtttgctt
      121 tctttggatg aaagtatgga atctaaattt tttaaagttt gagaaagcaa agaaccgcta
      181 tctttagaat ttgttttttg catagaatga gtgcttgtag tatgagttgt attttctaaa
      241 ttgtgattta aatttttact cacattggaa attttattat tgatgatttc tttaaaaaca
      301 ttatccacag cacccttaaa aaaatcagcc ttatctaaat ttggaaaagt tgctttaaga
      361 tcaagaagac gatctacttt aatatttttt acatttaagc ccagatcttt agctatgtcc
      421 aaaagctcac taagatttga tgcacctttt aaagcattaa aattagcctc tgttttaata
      481 agacttgaaa gttgagtaga aagatttgct agtttaacat ctgctgtatt tgtttttagc
      541 ttatctaaca aagaaagaat ttgcataaaa gaagcagatt cgaaaatgct tatcttatcg
      601 ctctcatcaa aagctccttt ttgaagtctg ctcatcgctt cattaacaac ttctttttga
      661 ctgatcttca tatgatcagg taaaaattca ttggtttcat tgatagaatt aagcaaagaa
      721 tttaaaaaac tctctgtatc atcttgagtt gaatttttac tatcgctact ttcatgttct
      781 ttatttttac tcgttttact aaaggaacta ctagtattag aagttttact cggcgtaaga
      841 tttaaaacat cattttgcgg agctaaattt gacatcactt ttccttcaaa aaaaattatt
      901 ttaaaaattt atctaccatt acattaggaa atttttcttt c
//
LOCUS       DARGEM010000230          915 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.230, whole genome shotgun sequence.
ACCESSION   DARGEM010000230 DARGEM010000000
VERSION     DARGEM010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.230"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..794)
                     /locus_tag="SFZ78_001835"
     CDS             complement(<1..794)
                     /locus_tag="SFZ78_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8212657.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAS
                     IGATQSSKIGLTRFETGSRISVGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALA
                     DEINKNADKTGVRATFTVETRGMGAVRAGATSDDFAINGVKIGKVD"
BASE COUNT          275 a          183 c          132 g          325 t
ORIGIN      
        1 taatctactt taccgatttt taccccattg atagcaaaat catctgaagt agctccagcc
       61 ctaactgctc ccatgcctcg agtctctact gtaaaagtag ctctaacacc tgttttatca
      121 gcatttttat tgatctcatc agctaaagct ccaagtcctg ttccaactga agttgaaatc
      181 acaacttttt gaaatttaaa atcatctata ccattgtaat ttttaagggt aaattgcact
      241 tcaccaccaa ctgaaatcct tgatcctgtt tcaaaacgag ttaaacctat cttagaagac
      301 tgggttgctc ctatacttgc ttttacagtt tgatttgaac tcgcaccgat ttgaaattct
      361 tgattgataa aatttccact taaaagttgc ttaccgttaa atgaagtagt atttgcgata
      421 ttgtcaagtt cttccattaa acggttgata tctgcttgaa gcatggttct tgtttttaaa
      481 ctttgtccat cttgagccgc ttgagttgcc ttagttttga ttgtatctaa gattttaagt
      541 tgctcatcca tagccttatc agcagtttgt aaaataccta aagcatcgtt accattagat
      601 atagcttgac ctaaagtatt agcttgagat cttaaactat ctgctatcgc catccctgaa
      661 gcatcatctg ctgcggagtt gattctaaga cctgaactaa gtctgcttaa agaagcatcc
      721 aaacttttac tatttaaatc agcgtttgct ttagcattta aagctgcaac attggtgtta
      781 atacgaaatc ccattttaaa tccttttaaa aaatttcaag cccatccatg aacttgttaa
      841 atgctatatc gtgcaatcaa aaaaatattt tatactttgg taataaaatt tcatactttt
      901 gacaaagact tgtat
//
LOCUS       DARGEM010000231          913 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.231, whole genome shotgun sequence.
ACCESSION   DARGEM010000231 DARGEM010000000
VERSION     DARGEM010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.231"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(90..>913)
                     /locus_tag="SFZ78_001836"
     CDS             complement(90..>913)
                     /locus_tag="SFZ78_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG8212658.1"
                     /translation="EKICKEKNTKIFLLDHHQSGEECAQKYSWYLLDSKRCATKIVYD
                     FFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFKESQI
                     DYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVVEKLSEL
                     KENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANGKIDV
                     SLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          319 a          155 c           94 g          345 t
ORIGIN      
        1 ctcttttaac tccagcgtat aaaagcatag cttctaaaac tatgctaagc tcatattgta
       61 aatcttctaa ttcatttttt aaggttttat tattgttttg attcattgtt ttccttttta
      121 agttctttgc ttttaattaa atcaataatt tgagccttaa tataattata atttgctcca
      181 tctttaaatg tcgcaaaaag tccaccacta gcatttttat gtccgccacc acctactaaa
      241 tttttagcca ttaaacttac atctattttt ccatttgcac gaaaacttaa ggtttttcta
      301 gaactaacat caataaaaaa gtcataatca ggatttttta ctaaaaaatc atttccaata
      361 acagaagtat tgcctatatt tgaagttaag atgcctttat ggccttcata ttctatgcta
      421 aaattttctt ttagctcact tagtttttca actacaaaat aagaaattaa attagaaaga
      481 gtatcatcat tttttctggc aaaataatcc ttttttataa aatgagtagc attatcgagt
      541 aaaatatttg cattttcttt tcctataaat ttccaagcct tatcaagcaa gaaaaacata
      601 taatcaattt gagattcttt aaacattaca cgatttattt cttttgcatt ggcaatcaag
      661 cctaaaaaaa cctttccaag ttcaaaattt tcatcctcgc ttagccaaat atcaacagca
      721 ttaaccacat caacaaattt tgaaagttct aaaacaggag tacagatttt agagaaaaaa
      781 tcataaacga ttttagttgc acatctttta gaatcaagta aataccaaga atatttttga
      841 gcacattctt cgccactttg atgatgatca agaagaaaaa ttttagtatt tttctctttg
      901 caaatttttt caa
//
LOCUS       DARGEM010000232          862 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.232, whole genome shotgun sequence.
ACCESSION   DARGEM010000232 DARGEM010000000
VERSION     DARGEM010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.232"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            44..>862
                     /locus_tag="SFZ78_001837"
     CDS             44..>862
                     /locus_tag="SFZ78_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212659.1"
                     /translation="MQIKLDNLNSYIPKDIVDNIEKYDNEHFYKINHIIKSKHKGFFD
                     FDEKSKNPTSPLNPWAYIRVKNEALTLKASLKSILPAIQRGIIGYNDCNDGSEEIILE
                     FCKQYPSFIPVKYPYEVQIENPQSEENKLYSYYNYVASFIPQGEWLIKIDVDHIYDAK
                     RLYKSFYIPKKDYDILCYSRIDFYYKDDDRAEVFIVKYKSINNILNNKSNDQWLIKNN
                     HLKWAESMHEDRYCIEYLDIKKLKIYQTEFLNYHFPYFKRSLDKNKIELIPIDDF"
BASE COUNT          372 a           88 c          123 g          279 t
ORIGIN      
        1 aaatataagg gcaataatta gagaaaaatt actcaatcaa tttatgcaaa taaaacttga
       61 taatttaaat tcgtatattc caaaagatat agtagataat atagaaaaat atgataatga
      121 acatttttat aaaataaatc acattataaa atctaaacac aaaggatttt ttgattttga
      181 cgaaaaatct aaaaatccaa catcaccttt aaatccatgg gcttatataa gagtaaaaaa
      241 tgaagcatta actttgaaag cttcgttaaa aagtatactt ccggctatac aaagagggat
      301 tataggatat aatgattgca atgatggaag cgaagagata atcttagaat tttgcaaaca
      361 gtatccttct tttataccag taaaataccc ttatgaagta caaattgaaa atccgcaaag
      421 tgaagaaaat aaactttata gttattataa ttatgttgca agctttattc cacaaggaga
      481 atggcttata aaaatagatg ttgatcatat ttatgatgct aaaagacttt acaaaagttt
      541 ttatatacct aaaaaagact atgatatact ttgttattct cgaatagatt tttattataa
      601 agatgatgat agagctgagg tatttatagt aaagtataag agtatcaata atatcttgaa
      661 taacaagagt aatgatcaat ggttgataaa aaataatcat cttaaatggg cagaaagtat
      721 gcatgaagat aggtattgta tagagtattt ggatataaaa aagttaaaaa tttatcaaac
      781 agaattttta aactatcatt ttccatattt taagagaagc ttagataaaa ataagataga
      841 attaattccc atagatgatt tt
//
LOCUS       DARGEM010000233          859 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.233, whole genome shotgun sequence.
ACCESSION   DARGEM010000233 DARGEM010000000
VERSION     DARGEM010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.233"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(255..395)
                     /locus_tag="SFZ78_001838"
     CDS             complement(255..395)
                     /locus_tag="SFZ78_001838"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212660.1"
                     /translation="MWYMKIFKDYQKFTPYGLDFRLYSKDFITKLDFKDEAYNVLYNT
                     GV"
BASE COUNT          392 a          111 c           89 g          267 t
ORIGIN      
        1 tacatatcct ctataagttt caagatcata gctaagataa aatatgataa taatagctgt
       61 aaaaaagata ataaaatata ttgaaaaata agattttaaa aattctttta tgttaattct
      121 catccaataa tttataatag aaaaggcaat aagaacgctt aaggctgtaa tataaagtat
      181 tgtatcaata gtaacaagcc taaaaataaa tcctaccaaa cccaaaaaat agaaaatgta
      241 atatcttctc ccatttaaac tcctgtatta taaagcacat tataagcttc atctttaaaa
      301 tcaagtttag tgataaaatc tttactataa agtctaaaat ccaaaccata aggagtgaat
      361 ttttgatagt ctttaaagat tttcatatac cacatacaca ctcgcaatta ataaaaagat
      421 attacacaca aaccctataa gccaacttaa ttttttgcgt ttttctcctg tgctataaca
      481 tttaaataaa taagcttgta ataaacaagg aaatatgata aatgtgatta ctaaaaaaaa
      541 catagttgca aaggttaaaa atttaaaata attacgcact ctatattctt gcggtgataa
      601 tttttcaatt tctggaggat caagtaatac aagcgattta taaaattcaa gatcatagct
      661 aagataaaat atgataacaa tagccataaa aaagataata aaagatatta aaaaataaga
      721 ttttacaaat tcttttatgt taattttaat ccaataattt aaaatagaaa agacaacaag
      781 aacacttaaa gttgtaagat aaaattttat attagtaaaa gcaagaataa atccaaataa
      841 accccaaaaa atagaaagt
//
LOCUS       DARGEM010000234          858 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.234, whole genome shotgun sequence.
ACCESSION   DARGEM010000234 DARGEM010000000
VERSION     DARGEM010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.234"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            45..269
                     /locus_tag="SFZ78_001839"
     CDS             45..269
                     /locus_tag="SFZ78_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG8212661.1"
                     /translation="MTLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDASCVILRSDEAKTIEVNLI"
     gene            266..>858
                     /locus_tag="SFZ78_001840"
     CDS             266..>858
                     /locus_tag="SFZ78_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HEG8212662.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKK"
BASE COUNT          343 a          110 c          124 g          281 t
ORIGIN      
        1 tacacttttt tattataata tttattatta atttaggaat tacaatgact ttagataatt
       61 taaaagatgg acaaaaggct attattgtca atttaagcgc tcaaaaagaa ctcaaaaata
      121 gacttttaag ctttggattt atcaaaaata aaaacttgaa aaaaattcac tcctctttaa
      181 aaaatgccac cataatggta gagcttgatg caagttgtgt tatcctaaga tctgatgaag
      241 ctaaaaccat agaagtgaat cttatatgaa aaaaatcaaa atagcccttg taggtcagcc
      301 taatgtaggc aaaagtcttc ttattaatgc gctttgcaaa gctaatatga aagtaggaaa
      361 ttttagcgga gttactatag aaaaagcaag tgcaaaaact ttttacaaaa actatgaatt
      421 tgaagtcatt gatttaccag gaacttattc tttagatgga tatagtgaag aagaaaaaat
      481 cacacgccat tttttaaatc aaaatgacta tgatgttatt gttaatgttt tagatgctac
      541 caatttagaa cgtaatctta tccttagtgc agaactttta agccttaata aaaaaatgct
      601 tttagcttta aatatgtgcg atgaagccaa aaaagaaggt atagagcttg acacttctat
      661 tttaagccaa gaatttcaaa gtcaagttgt tgaaatttca gcaaaaacaa aagaaaattt
      721 agaacttttg ctgcaaaaaa ttattatttt atttgaaagt aaatttattc caagatctca
      781 attttatact ccgctttgcg aaaaaagtcc ggaaaaagaa gatttattat attttattaa
      841 tgaactttca aaaaaaat
//
LOCUS       DARGEM010000235          851 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.235, whole genome shotgun sequence.
ACCESSION   DARGEM010000235 DARGEM010000000
VERSION     DARGEM010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.235"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            27..320
                     /locus_tag="SFZ78_001841"
     CDS             27..320
                     /locus_tag="SFZ78_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEG8212663.1"
                     /translation="MQTHHIATNKSKKFTKEFQEILNSYDLKLNGDWNKVKMPHRGRH
                     PNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKNNPAILHKDYYKERK"
     gene            320..>851
                     /locus_tag="SFZ78_001842"
     CDS             320..>851
                     /locus_tag="SFZ78_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212664.1"
                     /translation="MKYYKMMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQ
                     TPSFEIDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLG"
BASE COUNT          376 a           86 c          130 g          259 t
ORIGIN      
        1 gaggaagcaa taacaaacaa tcatcaattc aaacccatca tattgctact aataagagta
       61 aaaaatttac taaagaattt caagagatac ttaattcata tgatttaaaa ctaaatggag
      121 attggaataa agttaaaatg ccacatcgcg gaagacatcc taatgaatat catgaatata
      181 ttcttgaaaa aatgagtaaa attgataaaa tagcaagagg agataaggat aaattcataa
      241 aagaatttga aaaactaaaa gaagaagtca aaaacaatcc tgctatactt cataaagatt
      301 actataagga gagaaaataa tgaaatatta taaaatgatg tataatggac aacataatga
      361 cgttgataat tggataaatt gtattaaacc agatataaaa aataatgaca aatatgcact
      421 tttagaatcc aaacctatca caaattggca aacacctagt tttgaaatcg ataaagatga
      481 tggtaaaata ctgaccgatt taatatctaa tgtatataat tggcgtatag tctctcctaa
      541 atttataaat ttaatgcaag atttaattaa agattgtgtg caatatttag atgtagaaat
      601 taaaagtcag gaaataaatt attatggttg taaaattatg catgtaataa aatcacttga
      661 ggctttagat tatgaacatt ctgtatatac ttatatgggt gataatgatg aatatttaag
      721 tattactaaa gctgttttaa aaaaatcaaa acttgatgga agccatatat ttagaattaa
      781 agatgatgaa gtgcctgttt ttgtatcaag tgaatttaga aaaatagtga gagaaaacaa
      841 tttattaggt t
//
LOCUS       DARGEM010000236          840 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.236, whole genome shotgun sequence.
ACCESSION   DARGEM010000236 DARGEM010000000
VERSION     DARGEM010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.236"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..422)
                     /locus_tag="SFZ78_001843"
     CDS             complement(<1..422)
                     /locus_tag="SFZ78_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HEG8212665.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDG"
BASE COUNT          318 a          109 c          100 g          313 t
ORIGIN      
        1 cttccatctt ttataagtgg ctccatgctt tctccatagc aagtgataaa ctcacactct
       61 ttactaccaa aaaagtttaa taatttttca tccataataa gctcagagca atctattaaa
      121 tcatttattc cacctccgcc taaactcgca tttgttttat aaagctttaa aattttatat
      181 ttattctcac attctaattg atcttttggg gaacttccat agaagaaata attaatgctt
      241 atattcctct catttaaaaa gtttaagatt tgtggataag gaatggagtt tctaaatttc
      301 atagaattaa aagtatcagg atgaatgcct aattctttag ctatatcttt ggtttttaaa
      361 tcacgcttac cttcgctagc aagtatatct tttaattttt caatcacttc ttgcatttgc
      421 attttaaatc ctttgatttt aatttcaaag aatttaaaca taaaatttca aaaagcaatt
      481 aaaaactttt gatttgaaag attaaaatat agatgtgaat ttcgtgttag aaatcaaagt
      541 gaaaaaataa gactttgatt ttaagtgtca aatgactttg atttgtaaag cggttttata
      601 aatgtcaaac agtttatgat ttgctttatg aaaaaagaaa tttgttaaat attatcgaca
      661 ctataggcat agaactttgt aataaaattt gtaagaattt aaaagaagat gatgaaaatt
      721 tttaccatcc aaaaatcttt aaaaaggcct tataaaaagg aattttaggt agaaaaataa
      781 aacaaacata agtgatattt tataaaataa gcaaatatta atttaatatt ttatacaatc
//
LOCUS       DARGEM010000237          826 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.237, whole genome shotgun sequence.
ACCESSION   DARGEM010000237 DARGEM010000000
VERSION     DARGEM010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.237"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>826
                     /locus_tag="SFZ78_001844"
     CDS             <1..>826
                     /locus_tag="SFZ78_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212666.1"
                     /translation="AQIDLNTTKISKNYLIISNIPNKYNAGLSESLTQEIANYNIQDK
                     YRRIKKNIDTSKKTYDSTRDYSEYSIEMPQDENEPYILQLSPFVKISKEAYENSKKAY
                     EDMQKVYKYLTNFVATPQKLPEFAKTAKEKLAISENEPIIEIVKKTENLRHCERINIL
                     AYIDYNKKINDKKWLPYFYIKKFFKQNEVKESIIEKEKKIAHQYLTFLKKEFFEKSDK
                     SSFENYSLMECLFISFVLYQAKLIFPNINLDLKKYGGSNFVYIKYLDKTYVLWTDE"
BASE COUNT          373 a          101 c          106 g          246 t
ORIGIN      
        1 atgcacaaat agatttaaat acaactaaaa taagtaaaaa ttatttgatt atttcaaata
       61 tccccaataa atacaatgca ggacttagtg aaagtttaac tcaagaaatc gccaactata
      121 atatacaaga taaatacaga agaattaaaa aaaatattga tacttcaaaa aaaacttatg
      181 acagcacaag agattatagc gaatatagca tagaaatgcc acaagatgaa aatgaacctt
      241 atattttaca attaagccct tttgtgaaaa tatccaaaga agcttatgag aatagtaaaa
      301 aagcttatga agatatgcaa aaggtttata aatatttaac aaattttgtt gctacacctc
      361 agaagctacc agaattcgca aaaacagcta aagaaaaatt agcaatatca gaaaatgagc
      421 caataataga aatagtaaaa aagacggaaa atttacgaca ttgcgaacga ataaacattt
      481 tagcttatat tgactacaat aaaaaaataa atgataaaaa atggcttcct tatttttata
      541 tcaaaaaatt ctttaaacaa aacgaagtca aagaatccat catagaaaaa gaaaaaaaga
      601 tagctcatca atatttaact tttttgaaaa aagagttttt tgaaaaatcg gataaatctt
      661 catttgagaa ctattcttta atggaatgtt tattcatttc atttgtcttg tatcaagcta
      721 agcttatttt tccaaatatc aatttggatt tgaaaaaata tggaggcagt aattttgtat
      781 atataaaata cttagataaa acttatgttt tatggacaga tgaatg
//
LOCUS       DARGEM010000238          825 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.238, whole genome shotgun sequence.
ACCESSION   DARGEM010000238 DARGEM010000000
VERSION     DARGEM010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.238"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..626
                     /locus_tag="SFZ78_001845"
     CDS             <1..626
                     /locus_tag="SFZ78_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212667.1"
                     /translation="KSVSDGDKYLKEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSN
                     KSDEEKIMFFQEFLEDLVKAFDIEPPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKE
                     EQILSTFFHEFRHFYIDKNNSKEIKNQHTESIFKLIYSNGYFKFENVVMFWAYDKKCI
                     ISNNYTDCVGVKPYKYSIFSDKPAIYWFSPSERDARISTFYFEKYRG"
     gene            607..>825
                     /locus_tag="SFZ78_001846"
     CDS             607..>825
                     /locus_tag="SFZ78_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212668.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYL"
BASE COUNT          347 a           81 c          118 g          279 t
ORIGIN      
        1 ttaaaagtgt aagtgatgga gataagtatt taaaagaaag agagaaattt gttaaaaaat
       61 ttatagatgt ttattctgat gagaaatttt ttatcatacc aagctataaa gcaaaattta
      121 gtgaattttc aaacaaaagt gatgaggaaa aaattatgtt ttttcaagaa tttcttgaag
      181 atttggtaaa agctttcgac atagaaccac caattccaac tatttataaa gagtttaaac
      241 aatacaataa cggatcttat aatagtgtag gaaaaaaagc attatatttg aatttaaaaa
      301 acaaagaaga acagatatta tcaacttttt ttcacgaatt tagacatttt tatattgata
      361 aaaataattc taaagaaata aaaaatcaac atacagaaag catttttaaa ctcatatatt
      421 ctaatggata ttttaaattt gaaaatgttg ttatgttttg ggcgtatgat aaaaaatgca
      481 taattagtaa taattataca gattgtgtcg gagttaaacc ttataaatac agtatatttt
      541 cagataagcc tgcaatttat tggttttctc caagtgaaag agatgcgaga ataagcacat
      601 tttattttga aaaatataga ggttgatatg ttagaagtag ccataaagaa tatatttaaa
      661 cataaagatt tcttacaaac cagaaaagaa ccttatgcta tttatttagc cataaataca
      721 aacataaaaa gttataataa tatttgccct agcgagaaat atttttggaa atttaatgat
      781 atgaatgagc ttgaatgcta taatccaaaa tttggcatat atctt
//
LOCUS       DARGEM010000239          818 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.239, whole genome shotgun sequence.
ACCESSION   DARGEM010000239 DARGEM010000000
VERSION     DARGEM010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.239"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..268
                     /locus_tag="SFZ78_001847"
     CDS             <1..268
                     /locus_tag="SFZ78_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212669.1"
                     /translation="NNGTSLNFTAYNYSNPNLNYTKSYKGEWAWYKFIKDNKSNSIYS
                     IIFNNNKNLYFDFEIINGASELNNIVYILNNLKIVENITGVNKQ"
     gene            265..>818
                     /locus_tag="SFZ78_001848"
     CDS             265..>818
                     /locus_tag="SFZ78_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEG8212670.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNS"
BASE COUNT          359 a           81 c          127 g          251 t
ORIGIN      
        1 caataatgga acaagtttaa attttacagc ctataactac tctaatccta atttaaatta
       61 tacaaaatca tataaaggag aatgggcatg gtataagttt ataaaagata ataaaagtaa
      121 ttctatatac agcattatat ttaacaataa taaaaactta tattttgact ttgaaattat
      181 taacggtgct agtgaattaa ataatatagt ttatatttta aataatctta aaatagtaga
      241 aaatattaca ggggtaaata aacaatgata gaaaaagaag agataggaat tgctattgag
      301 aattatgacg aatgtattag tggttctaaa acatttgtat ttaacacaaa gggtggaact
      361 ataggaagcg gtgatgattg cacttttcgt attcaagata aactagaaca aatcaaaaat
      421 acccatgcca tagtatctta tgaagaagga tcttttacaa ttgcggcttt tgaagattct
      481 gacatttatt ataataagtc cttttctaga atgccaagtg gctatgaaat aataatcagc
      541 ataggcgata tttttaaaat cggtaattta gaatttagat ttgtggatgc aaaaagcatt
      601 gaagcaagca ttaaagaaaa taaaaaatac ttagaagata ttgaaaaacg caatcatttt
      661 gatgagattg aaattaaacc tagaggaaaa acaagtataa attttgacaa aaacaaagag
      721 ttaaaagaga ttttagaaaa taatgattat aaatttatcg aagaagaaaa ggcagatgat
      781 agctttttaa aagaaataat tcaaaaaaat ccaaattc
//
LOCUS       DARGEM010000240          810 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.240, whole genome shotgun sequence.
ACCESSION   DARGEM010000240 DARGEM010000000
VERSION     DARGEM010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.240"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>810
                     /locus_tag="SFZ78_001849"
     CDS             <1..>810
                     /locus_tag="SFZ78_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8212671.1"
                     /translation="YFEDCFLDLVFEDIAVLKELDFKADVWYLDGFSPNKNLQMFDEN
                     LIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKREMIKAYLENELEFK
                     DKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDVFEKYLELGKGASGNE
                     SGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFAHNDLMQERFDTQR
                     ENVLFKISKNQAFLEEGGVIFPKNLVKNLFEKSKACIYFNHEFQAYKFENE"
BASE COUNT          298 a           68 c          152 g          292 t
ORIGIN      
        1 tttattttga agattgtttt ttagatcttg tttttgaaga tatagctgtt ttaaaagaat
       61 tggattttaa agctgatgtt tggtatttag atggattttc tccaaataaa aacttgcaaa
      121 tgtttgatga aaatttaatc tttgaagtgg caagactttc taaaaaaaat acacaaattt
      181 gcaccttttc ttcggcaagt tttttgcaaa aaaatttaaa aaaatatggt tttagagtag
      241 aaaaaaccaa aggttttaga aaaagagaaa tgattaaagc ttatttggaa aatgagcttg
      301 agtttaaaga caaagaagcg tatttttcaa gaacattttc atctttaaaa aataaaaaag
      361 tagctattat tggtgcgggt atatcaagcg ctgttttagc ttatgaactt agtttaaggg
      421 gttttgagat agatgttttt gaaaaatatt tagaattagg caagggtgca agtggaaatg
      481 aaagtggaat tttaagctct ttaatcttaa aacctaaggt aaatttaggg gagttttcag
      541 agctttcttt tatagaagca agccgttttt atagacaaat tttagattta gaatttaagg
      601 gtgtggtgga gtttgcacat aatgatttga tgcaagaaag atttgacaca caaagagaaa
      661 atgttttgtt taaaatttca aaaaatcaag cttttttaga agagggtgga gtgatttttc
      721 caaaaaattt ggttaaaaat ctttttgaaa aaagtaaagc ttgtatatat tttaatcatg
      781 aatttcaagc ttataaattt gaaaatgagt
//
LOCUS       DARGEM010000241          806 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.241, whole genome shotgun sequence.
ACCESSION   DARGEM010000241 DARGEM010000000
VERSION     DARGEM010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.241"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            49..>806
                     /locus_tag="SFZ78_001850"
     CDS             49..>806
                     /locus_tag="SFZ78_001850"
                     /inference="COORDINATES: protein motif:HMM:NF013882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEG8212672.1"
                     /translation="MKFFIINLKIAKDRKEYMQNLCLKHNLDYEIIQAVDGKELDSDF
                     VKNISDFSLSEKYLGRTLSLGEIGCALSHKKCFERMFELNLNECLILEDDAYFDEKLN
                     YILSLKDKFPKDLELFLLGHYRQVYLDDGFRIESPFSLRYDYKIDDFYHAKRLVGGGN
                     GTHGYYINKNGALKMYKYLEKIIFPYDHCTSNDNIINVYALYPVVITTDEIFGAQTYV
                     QDDNKRRYRKRSKISKYIKKIKNKIIFFIPSLKK"
BASE COUNT          326 a           61 c          124 g          295 t
ORIGIN      
        1 attatagtat aattttatct tataaattat tatgataggt ttttatttat gaaatttttt
       61 ataatcaatt taaaaatagc caaagataga aaagaatata tgcagaattt atgtttaaag
      121 cataacttag attatgaaat catacaagct gttgatggaa aagagttgga tagtgatttt
      181 gtaaaaaata ttagtgattt ttctttatcg gaaaaatatt taggtagaac tttaagtctt
      241 ggtgagatag ggtgtgcttt atcccataaa aaatgttttg aaagaatgtt tgagttaaat
      301 ttaaatgagt gtttgatatt ggaagatgat gcttattttg atgaaaaatt aaattatatt
      361 ttaagtttaa aagataaatt tccaaaagat ttagaattat tcctacttgg tcattatagg
      421 caagtttatt tagacgatgg atttcgtata gaaagcccat tttctttaag atatgattat
      481 aaaatagatg atttttatca tgcaaaaaga ttagttggtg gtggcaatgg aacccatgga
      541 tattatatca ataaaaatgg tgccttaaaa atgtataaat acttagaaaa aataatattt
      601 ccatatgatc attgtactag taatgataac ataataaatg tatatgcttt atatcctgtt
      661 gttataacta ctgatgagat atttggagcc caaacttatg tgcaagatga taataaaaga
      721 agatatagaa aaagaagtaa aatttcaaaa tatataaaaa agataaaaaa taaaatcata
      781 ttttttatac ctagtttaaa aaaatt
//
LOCUS       DARGEM010000242          789 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.242, whole genome shotgun sequence.
ACCESSION   DARGEM010000242 DARGEM010000000
VERSION     DARGEM010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.242"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            72..764
                     /locus_tag="SFZ78_001851"
     CDS             72..764
                     /locus_tag="SFZ78_001851"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212673.1"
                     /translation="MDNAKEALKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDL
                     TMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFVLRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNVGEFYNKLV
                     EYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
BASE COUNT          324 a           91 c          121 g          253 t
ORIGIN      
        1 aagttagcga acaaatacaa aaataaagat aagcaaaaag ctttagcttc ttggctagaa
       61 gaggagtttt aatggataat gcaaaagagg cactaaaaga gctttttggt attagtgaag
      121 ttcaagcagt ggttatagaa aaactttatt ttaaagccaa aacaccaaaa gatatattag
      181 gctttaaaaa atactatgat ttaaccatgt taaaaaagca atttgttggt acaagctatg
      241 aaaaactttc tcttgtgtgc gcctttgcag agcttgattt aaacttaagg tacaaaaata
      301 tagagtcttt tttagaatgg cttttcattt cattttcaaa tcgttttatt tttcaaacaa
      361 aaaaaggaga tttctcatat tcttttgtac ttagatatta tgatggtaac attgtttatg
      421 atgagttagg aaagcctgtt ttaaagcatg ttgattgtgg agataatctt tattttatta
      481 atgctaataa agagctttgt gatgagcaaa gaaaaccact gaatgtagga gagttttata
      541 ataagctagt tgaatatatg tttaaaaacc aagataaaat tatttttgat aataaaattg
      601 aaataagccc tgttattaaa actcaaattc ctagccaaac taaaataaat aaagattacg
      661 agcaaaacta tttagaatac aaaaagaatc aaaataagct ttataatgca aatattgata
      721 aattcacttc aaaactagag caaattttaa aggctaaaaa atgaatactc aaaacacttt
      781 aaaaaagca
//
LOCUS       DARGEM010000243          773 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.243, whole genome shotgun sequence.
ACCESSION   DARGEM010000243 DARGEM010000000
VERSION     DARGEM010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.243"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            26..>773
                     /locus_tag="SFZ78_001852"
     CDS             26..>773
                     /locus_tag="SFZ78_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG8212674.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEK"
BASE COUNT          326 a          103 c          111 g          233 t
ORIGIN      
        1 tttttattaa ataaaggaat cactcatgaa aatcaaagat atggaaatat ttttagatct
       61 tttaaacact caaagtccaa ctcatacagc caacaatttt tccataactc aacctaatgt
      121 ttcaatagta attaaaaatt tagaaaataa atttgatggc attttatttg aaagacttgg
      181 aaaaaaactc ttacctacac caaaagcttt agaactagga aaaaattggt taaaaattat
      241 acaagcctac taccaaagct tagaaaaatt aaacgacgaa agtatgctct taggggaaat
      301 aaaaatagcc tcaactcaaa gcatttctga acatttttta gctcctattt tatttgattt
      361 taaggcagaa tttaaaaaca tagaaattcg ctctcaaacg cagaattcaa aagaatgttt
      421 aaatttacta aaaaacggaa atatagaatt tgcaatcatt gaagcagaac ttgatccagc
      481 tttagtggag tatgaaaatt tagaaataaa tttttggcaa gatgatgaac ttatagtagc
      541 tacaagtgat aaaaaactca atgaaaaaga attttatatc gatgaacttt tggaacaaaa
      601 gtggatttta agagaagtag gctcaggctt aagggataaa tttttaaacg aaattggtgc
      661 aagctcaaaa aaacttaata tttttcttga acttgataga atggctgcga ttaaagaact
      721 tgttttacaa aaaaaagcaa tctctatttt ttccaaaaaa agcatagaaa aag
//
LOCUS       DARGEM010000244          772 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.244, whole genome shotgun sequence.
ACCESSION   DARGEM010000244 DARGEM010000000
VERSION     DARGEM010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.244"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            42..314
                     /locus_tag="SFZ78_001853"
     CDS             42..314
                     /locus_tag="SFZ78_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212675.1"
                     /translation="MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
     gene            311..697
                     /locus_tag="SFZ78_001854"
     CDS             311..697
                     /locus_tag="SFZ78_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212676.1"
                     /translation="MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKE
                     DCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSL
                     IYLVEDEGYTIETIGNIHENPELLKC"
BASE COUNT          325 a           76 c          140 g          231 t
ORIGIN      
        1 attaagtttt taaaacttaa tttaaaacaa aaggataaaa aatgtatgtc aatgtaagca
       61 tagatgcgag tgatttagaa gatatagatg ctcatgattt ggctgaactt tttgaagatt
      121 taagcacaaa agagcaagag gaattctttg gaattatcca taaggatatc aagccattag
      181 aaagaataag agctattctt tctaatttgt ctaatgatga agcacttaaa cttttaaaag
      241 aacttaataa tgagtttaaa agcgatgagg aatggcaaaa aactataaaa agtataaatg
      301 gaggtaacaa atgaaactac aagattttga ttttagagtt tgggataagc atcacaaggg
      361 ttgtggtaat aaggattgca aatgccaaac aaaatatgtt tatggtgaag aagccaaaac
      421 aaggttatct gagtttaaag aggattgtga aatagagctt tttacagggc tttatgacaa
      481 gaaaggtaaa aaagtatacg agaatgatat tgttaaagtt aaaagtctat acgattactt
      541 tttagcaaaa atcagcattc acaaagaagg gactttttat tttgaaggaa aaaatggaga
      601 ttacataggc tctttaattt atttagttga agatgaagga tatactattg aaactatcgg
      661 caatatccac gagaatcctg aacttttgaa atgttaaaaa atattaaaaa ttttaacata
      721 aaaatgaaat atgttaaaaa agccaaaaaa tttaacaaag tccattgatt ta
//
LOCUS       DARGEM010000245          763 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.245, whole genome shotgun sequence.
ACCESSION   DARGEM010000245 DARGEM010000000
VERSION     DARGEM010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.245"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>763
                     /locus_tag="SFZ78_001855"
     CDS             <1..>763
                     /locus_tag="SFZ78_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEG8212677.1"
                     /translation="INDKKVDIIYQEKRCTSYNISYEIKKLKKRRAKNKSLWLFADMP
                     FRADDNAEHLYRYVMKNYPEKNIAFVLRKNSHDYKRLKKEGFKLVDPKSFKFKYLVFK
                     ADKLISSHIERYFFEALGENTLKTKDFVFLQHGITQNDLSSWLNQRKIDLFITGMQDE
                     YDSIAGDFNRYKFTPKEVKLTGFPRWDALLKNNKIKTKQILIMPTWREYIVGSYSKKL
                     MKRRFNPKFYESEYFYRWDSFLHSKKLQELHEKYN"
BASE COUNT          304 a           75 c          118 g          266 t
ORIGIN      
        1 ttattaacga taaaaaggtt gatataatct atcaagaaaa aagatgtact tcttataata
       61 tttcttatga gattaaaaaa ttaaaaaaaa gaagggctaa gaataaatca ttatggcttt
      121 ttgctgatat gccttttaga gccgatgata atgctgaaca tttatatcgc tatgttatga
      181 aaaattatcc tgagaaaaat atcgcctttg tccttagaaa aaattctcat gattataaaa
      241 gactaaaaaa agaaggtttt aaactggttg atccaaaaag ttttaaattt aaatatttgg
      301 tttttaaggc tgataaactc atttcatcgc atattgagag gtattttttt gaagccttgg
      361 gggaaaatac tttaaaaact aaagattttg tatttttgca acatggaatt actcagaatg
      421 atttatcttc ttggttgaat caaagaaaaa ttgatttatt tattactgga atgcaagatg
      481 aatatgattc tatagcagga gattttaatc gttataaatt tactcctaaa gaggtaaaat
      541 taacgggatt tcctagatgg gatgctttgc ttaaaaataa taaaataaag actaaacaaa
      601 ttcttattat gcctacttgg agagaatata tagtaggttc ttatagtaaa aaattaatga
      661 aaagaagatt taatccaaaa ttttatgaaa gtgagtattt ttatagatgg gattcttttt
      721 tacacagtaa aaaattacaa gaattacatg aaaaatataa tta
//
LOCUS       DARGEM010000246          756 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.246, whole genome shotgun sequence.
ACCESSION   DARGEM010000246 DARGEM010000000
VERSION     DARGEM010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.246"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            68..>756
                     /locus_tag="SFZ78_001856"
     CDS             68..>756
                     /locus_tag="SFZ78_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8212678.1"
                     /translation="MNNIKIKLSVIANSIAIFALSILSIISFYFTKDSLYQSTLYTET
                     ELLKATQISIEDFRSRNISLLNTLEKDILKLPYEALNSQDNIVNNVGAILKYYRNSGN
                     LLAVYIGLDNGENIMSSDLSEKKNTNITINGKANNYNATTREWYKEARNSNQIYITPA
                     YIDAVSNEYCITYSKALYKDGKFIGVLGIDILLTSLQDQIARTPGNTFVFDNKDKIFA
                     ATNEALLDPSV"
BASE COUNT          294 a           97 c          105 g          260 t
ORIGIN      
        1 tttatatttt ataaaattaa tgttaaaagt tcttttacaa aaattaatta aatttaaaag
       61 gaaaaatatg aataatatca aaataaaact ttctgttatt gcaaattcaa ttgcaatttt
      121 tgctttaagt attttgagca tcattagctt ttactttaca aaagattctt tgtatcaaag
      181 tacgctttat actgaaacag aacttcttaa agcaacacaa atttctatag aggattttag
      241 atccagaaat atatctttgc ttaatactct tgaaaaagat atattaaaat taccctatga
      301 agcactaaat tctcaagata acatagttaa taatgtaggg gccatattaa aatactaccg
      361 caatagtgga aatttgcttg ctgtttatat tggtttagat aatggtgaaa atatcatgag
      421 tagtgatcta agcgagaaaa aaaatactaa tataactata aatggaaaag ccaacaacta
      481 taatgcaact actagggaat ggtataaaga agctagaaat agtaatcaaa tctatataac
      541 cccagcttat attgatgctg ttagtaatga atactgcatt acttactcta aagctcttta
      601 taaggatggt aaatttattg gtgttttagg aattgatatt ttattaacta gtttacaaga
      661 tcaaatcgct agaactccag gcaatacctt tgtttttgat aataaagata aaatttttgc
      721 agccaccaac gaagctttat tagatccttc ggtaga
//
LOCUS       DARGEM010000247          742 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.247, whole genome shotgun sequence.
ACCESSION   DARGEM010000247 DARGEM010000000
VERSION     DARGEM010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.247"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>742)
                     /locus_tag="SFZ78_001857"
     CDS             complement(<1..>742)
                     /locus_tag="SFZ78_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8212679.1"
                     /translation="MNVLRNLDINPSFISDLIFVQTQQDIKSKHAQTLIDSMQNFSKV
                     TPMIRKILAQQEVPDEILYLAMVESGLKTHSVSNAKAVGVWQFMQPTARNLGLRIDAY
                     VDERRDPVKSTYAATNYLKELKEEFGKWYLALLAYNCGNGKLRQAIKQAGSDDLSVLL
                     NPDKKYLSLETRNFIRKILTLAFLANDRDFLLDKDASLMNYALSNEFAKVDVPSSASL
                     KEIAKNLNMDLATFKKYNPQFKHNFTPPG"
BASE COUNT          248 a          131 c          100 g          263 t
ORIGIN      
        1 taccaggagg cgtaaaatta tgtttaaatt gtggattata tttcttaaaa gttgcaagat
       61 ccatatttaa atttttagct atttctttta aagatgcaga agaaggcaca tcaacttttg
      121 caaattcatt gcttaaagca taattcatta aagacgcatc tttatctagt aaaaaatccc
      181 tatcattagc taaaaaagca agcgttaaaa tctttcttat aaaatttcta gtttctaaag
      241 aaagatattt cttatcaggg ttcaataaaa cacttaaatc atcacttcct gcttgcttga
      301 tagcttgtct tagcttgcca tttccgcaat tataagctaa aagtgccaaa taccatttgc
      361 caaattcttc ttttaactct tttaaataat ttgtagcggc ataagttgac ttgactggat
      421 cacgcctttc atcaacataa gcatcgattc ttaaacccaa atttctagct gttggttgca
      481 taaattgcca aacccctaca gccttggcat tagaaacgct atgagttttc aagcctgatt
      541 caaccatagc tagatacaaa atctcatcag gaacttcctg ctgggctaaa atttttctta
      601 tcataggagt aacttttgaa aaattttgca tgctatctat taaagtttga gcatgttttg
      661 attttatatc ttgttgagtt tgcacaaaaa tcaaatcact gataaaactt ggattaatat
      721 ctaaatttct taaaacattc at
//
LOCUS       DARGEM010000248          736 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.248, whole genome shotgun sequence.
ACCESSION   DARGEM010000248 DARGEM010000000
VERSION     DARGEM010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.248"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            4..585
                     /gene="plsY"
                     /locus_tag="SFZ78_001858"
     CDS             4..585
                     /gene="plsY"
                     /locus_tag="SFZ78_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG8212680.1"
                     /translation="MYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNVLRVVKEKNP
                     KLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFSIYLLFEGGK
                     GIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISSFIFNYDLEI
                     HTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            570..>736
                     /locus_tag="SFZ78_001859"
     CDS             570..>736
                     /locus_tag="SFZ78_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8212681.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERKKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKK"
BASE COUNT          266 a           97 c          112 g          261 t
ORIGIN      
        1 tttatatatc ttttaggttc aatccctttt gggctaatcc tagctaaatt ttttgctaaa
       61 actgatatca aaaaagaagg ttcaaaaagt ataggagcaa ccaatgtttt aagagtagta
      121 aaagaaaaaa atcccaaact agcaaaaaaa cttgccattg ctacaataat tttagatttt
      181 gcaaaagcag ctattccttt actaatcttg aaatttcttc attatgatca agctttgctt
      241 tggagcgtcg cagttttggc tatttttgga cactgttttt caatttactt gttatttgaa
      301 ggagggaaag gcatagcaac aggagcaggc gctatgatag ttttacttcc attggaagtg
      361 cttacagcat ttattgtgtg ggtagttatt ggaaaaattt ttaaaatatc ttcgctagct
      421 tctttggcag cgttacttgc ttttgttata agttctttta tatttaatta tgacttagaa
      481 attcatacac atgcacccgt tttcattatc gcttttatta tagtatataa acatctacct
      541 aatattaaaa gattgatttt taaagaagaa tgcaaagtca tataaaaata aaatttcact
      601 ttaagtgtat tattggtata ttagatttcg aaagaaaaaa aaaacaaaaa attattatca
      661 agcttaaagc taaagcaaat gaatttttaa attatgcaga ggtaattacc aaaattaaaa
      721 catggtataa aaaaga
//
LOCUS       DARGEM010000249          735 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.249, whole genome shotgun sequence.
ACCESSION   DARGEM010000249 DARGEM010000000
VERSION     DARGEM010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.249"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>735)
                     /locus_tag="SFZ78_001860"
     CDS             complement(<1..>735)
                     /locus_tag="SFZ78_001860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212682.1"
                     /translation="DLTPKYLSIEENIFFNFQLLSKSRYIYGSQWSTFRILAGFLGEC
                     KKQEAILDTFTYDEQYQILSDNLRSVKTNRSYKAASCMYLYVIGRNIDKDKECLIKIL
                     RKGFRYDPKNLSFKIKIIDLLFELDVVKAECEIKNIFFEKKYGFIELLFSKFYKMEFE
                     MEWRNYLKFANKNYPYISLIASYIAFYIGDIENSLKLYSYYKDDEEIKDITSKVFMCE
                     IFQKNFYYLNQEIIDKNIIITSLNQQ"
BASE COUNT          275 a          105 c           59 g          296 t
ORIGIN      
        1 atttgttggt ttagtgaagt tattattata tttttatcaa taatctcttg atttaaataa
       61 taaaaattct tttgaaatat ttcacacata aacaccttag atgtaatatc tttaatctct
      121 tcgtcatctt tataataaga atataacttt aaagaatttt caatatcacc aatataaaat
      181 gctatataac ttgcaattaa agaaatgtaa ggataatttt tatttgcaaa tttaagataa
      241 tttctccatt ccatctcaaa ttccatttta taaaatttag aaaacaataa ttctataaat
      301 ccatattttt tttcaaaaaa aatattttta atttcacatt cggctttaac aacatcaagt
      361 tcaaatagta aatcaattat tttaatctta aacgagagat tttttggatc atatctaaaa
      421 ccctttctta aaatttttat taaacattcc ttatctttat ctatatttcg tccaataaca
      481 tataaataca tacaacttgc tgctttataa cttctattag tttttacgct tcttaaatta
      541 tcgcttaaaa tctgatattg ttcatcatat gtaaaggtat ctaaaattgc ctcttgcttc
      601 ttacattctc ctaaaaatcc agctaatatc ctaaaagtag accattgaga accatagata
      661 tatcttgatt tagataatag ttgaaaatta aaaaaaatat tttcttctat agataaatat
      721 ttcggggtca aatct
//
LOCUS       DARGEM010000250          733 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.250, whole genome shotgun sequence.
ACCESSION   DARGEM010000250 DARGEM010000000
VERSION     DARGEM010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.250"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..733
                     /locus_tag="SFZ78_001861"
                     /pseudo
     CDS             1..733
                     /locus_tag="SFZ78_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
BASE COUNT          344 a           55 c          102 g          232 t
ORIGIN      
        1 aatttaaaca tagaaaatat aaaaagcgta gaaacagaag cctgcataaa agataataga
       61 aggatagata ttttaataac attaagtgat aaaagatata ttataataga aaataaaatt
      121 tatgcaaaag atcaaaaaaa tcaattgaaa gattatatta attttgtaag aaaaaatatc
      181 aaaaatataa aagattgtta taaaaacata ttgactatat atttgcatca agatgagtgt
      241 gctagtccta gtgattatag tttgggaaat tttacaatgg tatatgacag atgagtatac
      301 tcaaagagat gatgtattag aatttatttt tcaagacaat ataaaaatgc aaaatttaaa
      361 aaatgcgatg attttatata gatataacaa aaataaatta gagcttaaaa atttaaacga
      421 acaagattat aaaaaagcca aaagtattat ccagcataaa tggagcaaca tctgcgaata
      481 tataatagaa gaattttttg atagttttga acacaaggaa attaaaatag gtgatataac
      541 ttttatcggc aataaaatag aagaaaatcg tgttaatcat ggtgtattta tattttatcc
      601 tattgattat aagaatgaaa gcatatatcc atgtctatat atttatttta aaaaaaatta
      661 ctatgatatt attggtttga catttgaaat ttcaaataat gatgaagaag atatagaaaa
      721 tgaaaaatat aaa
//
LOCUS       DARGEM010000251          724 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.251, whole genome shotgun sequence.
ACCESSION   DARGEM010000251 DARGEM010000000
VERSION     DARGEM010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.251"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..536
                     /locus_tag="SFZ78_001862"
                     /pseudo
     CDS             1..536
                     /locus_tag="SFZ78_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878197.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
BASE COUNT          303 a           62 c          114 g          245 t
ORIGIN      
        1 tgtggaaaaa taaatttaaa aatagatgtt attttatgga ttctgttttt ggaaacaaaa
       61 acaatgaaaa tattaaatta aatttttcaa atgctcattt tgaagataat gcttatttta
      121 ataattctga attttatagt tatgctgatt ttcacgagtg tgaatttgat gatatagctt
      181 gtttttatgg agtgaagttt tataaaactc cgaattttag cgcttgttat tttaaagaac
      241 caaaagctgt aaatttaatc aatgtcgata tagataagct agattttaaa tcagtggaga
      301 aatatataga agataactat gaagatgaaa gttataaaaa caaaatcaaa ggaatacaag
      361 atgaaaaaga gatttttaaa attcaaaacg aacatcaatt aagatatgcg aaaaatttaa
      421 aagattcttt cagggttata aaagatgttt taatcactca aaataacacc ctagaagctc
      481 aagaatggca taaattagaa ctttatgcga aagagaaaga gttagaaatt cagttaggcg
      541 gtgataacaa aggtagtatt agaaataatc gaaaaataaa aaaactgcaa ataaaaaaaa
      601 ataattatga agttaatatg ttttcaaaat ttaaagatct aggcgacata tatgtaaaaa
      661 tttgcgattt tgttgtttgt tttataatgc ttataggaag atcaatcttt ggttttttat
      721 tatc
//
LOCUS       DARGEM010000252          716 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.252, whole genome shotgun sequence.
ACCESSION   DARGEM010000252 DARGEM010000000
VERSION     DARGEM010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.252"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..669
                     /locus_tag="SFZ78_001863"
     CDS             <1..669
                     /locus_tag="SFZ78_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HEG8212683.1"
                     /translation="EAEVIKWNMSKVRRKKGVKTPLELWNSCDRSIVKISYEEFLFNA
                     GNKELRVVGKKGINFESRVYKSALMPSVGTRVKCVQNIDNIKELFIYDLSGNFLCLAL
                     DESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAAFTKLNIKQDLQDLQSAFENSL
                     IEAKEVHQKSLAKEALKTQRELEEIKNNANADELILNAKKEINNDESEFDMEAFVEKK
                     YFAG"
BASE COUNT          284 a           87 c          137 g          208 t
ORIGIN      
        1 gaagctgaag tgatcaagtg gaacatgagc aaagttcgcc gcaaaaaagg cgttaaaact
       61 ccacttgaac tttggaactc atgcgataga tctattgtaa aaatatctta tgaagaattt
      121 ttgtttaatg ctggaaataa agaacttagg gttgtgggca aaaaaggcat taactttgaa
      181 agtagagttt ataaaagtgc tttaatgcca agtgttggca caagggttaa atgtgtgcaa
      241 aatatcgata atattaaaga acttttcatt tatgatttaa gcggaaactt cctttgtcta
      301 gcacttgatg aaagtatcgc taaacttagt aaagaaagct ataaaatgct taaaaaaggt
      361 tatgaaagtg aagttaaagc gattaaagaa gtgcttaaaa aagatgagat tgccgccttt
      421 actaaactta atattaaaca agacttacaa gatttacaaa gtgcttttga aaactctttg
      481 atagaagcta aagaggtgca tcaaaaatcc cttgcaaaag aagccttaaa aactcaaaga
      541 gaattagaag agattaaaaa caatgctaat gcggatgagc ttattttaaa cgctaaaaaa
      601 gaaataaata acgatgaaag cgagtttgac atggaagctt ttgtcgaaaa gaaatatttt
      661 gctggttaaa aattgtttaa agcttgatta attcaagttt taaagagttt ttactc
//
LOCUS       DARGEM010000253          700 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.253, whole genome shotgun sequence.
ACCESSION   DARGEM010000253 DARGEM010000000
VERSION     DARGEM010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.253"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>700
                     /locus_tag="SFZ78_001864"
     CDS             <1..>700
                     /locus_tag="SFZ78_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8212684.1"
                     /translation="IKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEF
                     KAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKN
                     LSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIF
                     KALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDE
                     IYTYSTGSGLVWDSK"
BASE COUNT          287 a          106 c           94 g          213 t
ORIGIN      
        1 catcaaggtt aaagaggcaa tctctaaagg aagagtttat caaatcaacc ttactcaaaa
       61 ttttaaattt catagcaaaa tggattcttt tgaacttttt aaacttttgc tttctagaca
      121 agatactgaa tttaaagctt ttataaaaga tgaaacaaga gaaattttat ccttttctcc
      181 tgaacttttc ttcaaaacca aaaaaagaaa aatatttaca aaacctatga aaggcacaat
      241 taagcgtgat aaagatccta taaaagatga agaaaataaa attttcttgc aaaatgatac
      301 aaaaaatctg agtgaaaatg ttatgatttg tgatctttta cgcaacgatc tttcaaaaat
      361 catcacaaaa aaaagcttaa aaaccaaact ttttgaaatt caaagtcacc ctactttaca
      421 tcaaatgact tcaagcgtac aaggaaaact taaaaaaaat atttctttat atcaaatttt
      481 taaagctctc tttccttgtg gttctattac aggtgctcca aagcttgaaa gcattaaatt
      541 tattgaagaa ttagaacaaa gagatcgtgg tatttactgc ggaactatag gtttaataca
      601 caaaaataaa aataaattta gcgtagccat acgcacctta gaaaaacaag atgaaattta
      661 tacttatagc acgggtagcg gcttagtttg ggactcaaaa
//
LOCUS       DARGEM010000254          699 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.254, whole genome shotgun sequence.
ACCESSION   DARGEM010000254 DARGEM010000000
VERSION     DARGEM010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.254"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>699)
                     /locus_tag="SFZ78_001865"
     CDS             complement(<1..>699)
                     /locus_tag="SFZ78_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8212685.1"
                     /translation="ALVSAINSVKDTTGVEASIDENGKLLLTSREGRGIKIEGNIGRG
                     AFINPNMLENYGRLSLVKNDGKDILISGTNLSAIGFGTGNMISQASVSLRESKGQIDA
                     NVADAMGFNSANKGNILGGYSSVSAYMSSTGSGFSSGSGFSVGSGKNYSTGFANTIAI
                     SAASQLSAVYNVSAGSGFSSGSNLSQFATMKTSAGNTLGVKDETAGVTTLKGAMAVMD
                     IAETAITNLDQIRAD"
BASE COUNT          225 a          154 c          106 g          214 t
ORIGIN      
        1 gtcggctctg atttgatcaa gatttgttat agccgtttca gctatatcca tcacagccat
       61 agcgccttta agtgtagtta cacctgctgt ttcatctttt acaccaagag tattccctgc
      121 tgaagttttc atggttgcaa actgagaaag atttgatccc gatgaaaaac ctgaacctgc
      181 agaaacatta tataccgcag aaagttgcga agcagctgaa atagctatag tgtttgcaaa
      241 acctgtagaa taatttttac cgctacctac agaaaaacct gaacctgaag aaaatccact
      301 tcctgtacta ctcatatagg cactaacaga agaataacct cctaaaatat ttcctttatt
      361 tgcggaatta aagcccatag catcagctac atttgcatcg atttgccctt tagactctct
      421 taaagaaacg gaagcttgag aaatcatatt gcctgttcca aaacctatag cagaaagatt
      481 tgttccactg attaaaatat ctttaccatc atttttaact aaagataaac gaccataatt
      541 ttccagcata tttggattga taaaagcacc tctgcctata ttaccttcaa ttttaatccc
      601 tcttccctct cttgaagtaa gtaaaagctt accattttca tcgatagaag cttcaactcc
      661 ggttgtatct ttaaccgaat tgattgcaga aaccaaggc
//
LOCUS       DARGEM010000255          677 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.255, whole genome shotgun sequence.
ACCESSION   DARGEM010000255 DARGEM010000000
VERSION     DARGEM010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.255"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..342)
                     /locus_tag="SFZ78_001866"
     CDS             complement(<1..342)
                     /locus_tag="SFZ78_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8212686.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQA"
     gene            complement(487..>677)
                     /locus_tag="SFZ78_001867"
     CDS             complement(487..>677)
                     /locus_tag="SFZ78_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8212687.1"
                     /translation="TSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGS
                     YAMAQANSVQQNVLRLLQ"
BASE COUNT          197 a          118 c          121 g          241 t
ORIGIN      
        1 tgcttgaagc atggttcttg tttttaaact ttgtccatct tgagccgctt gagttgcctt
       61 agttttgatt gtatctaaga ttttaagttg ctcatccata gccttatcag cagtttgtaa
      121 aatacctata gcatcattac cattgtttat agcttgacct aaagtagctg cttgtgaacg
      181 caaagaatct gctatagcca tccctgaagc atcatctgct gcggagttga ttctaagacc
      241 tgaactaagt ctgcttaaag acttatccag ctctctagca ttaacaactg aatttgcatg
      301 tgcgtttaat gcaccgatgt tggtgtttat cctaaaaccc attttaaatc ctttcaaaat
      361 attgcatcga aaagattaaa gcaagaagtg ttccaagttt tagtttaatt aaaaatttta
      421 gagtttaaaa taaaaaagcc tagtttaaac taggcttgga tttgtatata ttgcagcttt
      481 tgtaaactac tgtagtaatc ttaaaacatt ttgctgaaca gaattagcct gtgccatggc
      541 ataagagcca ctttgagcta agatatttgc tttagagtag tttgcactct cagctgcaaa
      601 gtctacatca cggatttgtg attctgctgc tttaacattt acttgagtaa cagtgatgtt
      661 gtttatcgtt gatgtaa
//
LOCUS       DARGEM010000256          677 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.256, whole genome shotgun sequence.
ACCESSION   DARGEM010000256 DARGEM010000000
VERSION     DARGEM010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.256"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..232
                     /locus_tag="SFZ78_001868"
     CDS             <1..232
                     /locus_tag="SFZ78_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HEG8212688.1"
                     /translation="FKISALQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIA
                     LPKLDKGRWELKLKFYANQETVGFFSYELNAQ"
     gene            229..>677
                     /locus_tag="SFZ78_001869"
     CDS             229..>677
                     /locus_tag="SFZ78_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212689.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNK"
BASE COUNT          264 a           71 c          101 g          241 t
ORIGIN      
        1 ttttaaaatt tctgcattgc aaaatataaa ttctaatgat ttaaaagttc aagttcttct
       61 tacaagacca ttcactaaaa attttgatca aaagttagaa ggacaagtta aaaatggaat
      121 tttaagtatc gctttaccta aattagataa aggtagatgg gagcttaagc taaagtttta
      181 tgcaaatcaa gaaacagtgg gtttttttag ctacgaatta aatgctcaat gaaattaaga
      241 atttttagct cttcaaggca aattagagaa tattataatc aaaaaaaaca gcaaaatgct
      301 ttattagata gtgctattca tataggtgaa tttttagata aagtttgttt gagcaatttt
      361 cataaagcaa gttcttatga aagtttgctt ttaatgcaag aagcttgtct aaaaagtaag
      421 gatttagaaa aaaaactagg aatttcggta gaattttttg cttttttgaa aaataacgaa
      481 tatctttttt ctttttttaa agaactgagt ttggaaaaaa aaagcataga agatcttaaa
      541 aacaatgatt attatgccac ctataatgaa catttggaaa ttttagatga ggtatataag
      601 aattatcttg ctttgcttga aaagaattct ttttatgatg atctttcttt acctaaaaat
      661 tacactctta ataaaga
//
LOCUS       DARGEM010000257          673 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.257, whole genome shotgun sequence.
ACCESSION   DARGEM010000257 DARGEM010000000
VERSION     DARGEM010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.257"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..510
                     /locus_tag="SFZ78_001870"
     CDS             <1..510
                     /locus_tag="SFZ78_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212690.1"
                     /translation="GARINFTEELSFKECCEKLLTKEKPQFELPKSLTKNRSDKLLVK
                     FKEKIQKDQDNAKRFLDDALALKQILENILSKDFILPLEFLEKVYQNIENFNHSLDED
                     EFIQDEVLRGAFAYRGKMIADVLKLHIKDETHFITAYIKAYDEWLIYFIEKLGQRINI
                     IIDSFKELP"
     gene            507..>673
                     /locus_tag="SFZ78_001871"
     CDS             507..>673
                     /locus_tag="SFZ78_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212691.1"
                     /translation="MNLLEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIY
                     DKTHNVFMYEN"
BASE COUNT          280 a           76 c           94 g          223 t
ORIGIN      
        1 ggagcaagga ttaatttcac tgaagaactt tcctttaaag aatgttgtga aaaactcctt
       61 acaaaagaaa aacctcaatt tgaacttcca aaaagtttaa ctaaaaatag aagtgataaa
      121 ctcctagtta aattcaaaga aaaaatacaa aaagatcaag ataatgctaa aagattttta
      181 gacgatgctt tagctttaaa acaaatttta gaaaatatac tcagtaaaga ttttatttta
      241 cctttagaat ttttagaaaa agtctatcaa aatatagaaa attttaatca ctctttagat
      301 gaagatgagt ttatacagga tgaagtttta agaggagctt ttgcttatcg tggaaaaatg
      361 attgctgatg tattgaaact tcatataaaa gatgaaacac attttatcac agcctatatc
      421 aaagcttatg atgaatggtt gatttatttt atagaaaagt tagggcaaag aataaatatt
      481 atcatcgatt cttttaagga acttccatga atttgctaga aaaaaacata caagctttat
      541 taagtggggt aaatgaaccc ttaggaaata aacttttaaa tttcatacaa aataaaactt
      601 gctctcgttt taatatagat gaaaatttaa atatctatga taaaactcat aatgttttta
      661 tgtatgaaaa ttt
//
LOCUS       DARGEM010000258          670 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.258, whole genome shotgun sequence.
ACCESSION   DARGEM010000258 DARGEM010000000
VERSION     DARGEM010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.258"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..158)
                     /locus_tag="SFZ78_001872"
     CDS             complement(<1..158)
                     /locus_tag="SFZ78_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212692.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLK"
     gene            complement(168..>670)
                     /gene="pif1"
                     /locus_tag="SFZ78_001873"
     CDS             complement(168..>670)
                     /gene="pif1"
                     /locus_tag="SFZ78_001873"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8212693.1"
                     /translation="IGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGM
                     KILLEPYTFFMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDID
                     HIFENGQLYVALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLE
                     IQEQII"
BASE COUNT          247 a          103 c           63 g          257 t
ORIGIN      
        1 tcttttaaat tattcccatc aaattccaaa gaaatttcaa cttttttaag aacatttgct
       61 ccacttttag aatacaaatc tgttcttatt ttatctattt caagattttg agcatttaaa
      121 ctcaaaacca aaaaaacact taaaaatatt tttttcattt aatgccttta aatgatttgt
      181 tcttgtattt cgagatctaa aaaattatgt tttttataaa attcaatcac attagaatct
      241 atttttaaaa tattagcaaa ataaaatcca aaatttatct tttttgtaga ataaattttt
      301 aaagtatttg ggtttgtagc gcgagaaaga gcgacataaa gctgtccatt ttcaaaaata
      361 tgatcaatat cacacactaa tttttcaata ctcatacctt gtgatttgtg tatagtaata
      421 gcataagcta atttaatagg aaactgtgta acacttgcga gaatattaac aacaaaatct
      481 ttacctgatt gctcaagttc ttccataaaa aaagtataag gttcaagtaa aattttcatc
      541 ccattatttt taataatgct aatataaatt ttctcctctt cataaagaat atcttctata
      601 atgccttgct ctccattata ataattctta tcccaattat ttacgcaaaa aataatacga
      661 gcgcctattt
//
LOCUS       DARGEM010000259          660 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.259, whole genome shotgun sequence.
ACCESSION   DARGEM010000259 DARGEM010000000
VERSION     DARGEM010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.259"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..615
                     /locus_tag="SFZ78_001874"
     CDS             <1..615
                     /locus_tag="SFZ78_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEG8212694.1"
                     /translation="NFNTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLF
                     YNFPLPFKNPHKEGILKLILYRDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHK
                     SSLRSFYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLN
                     GVYRNFLVNLGLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT          266 a           92 c           77 g          225 t
ORIGIN      
        1 aattttaata ctcacaagct ctttaaagat ttttataatg ttttaaatca aaaaagttct
       61 tataaagaat atcaaaattt tacacttttt aaactcgatg aaaaaatttt ccacaaaaaa
      121 cactctttat tttataattt tcccctaccc tttaaaaatc cacataaaga aggaatttta
      181 aagcttattt tatacagaga cggaagatac gaatttcaac aaagtgcctt aaaacaaaat
      241 tcaaacgata ttttgctttt aagtgatgat aaaattaact caaaaagtga caatctctat
      301 cacaaaagct ctttacgtag tttttataat caacactcat acaaatggca gcaaaacttg
      361 tgttatgaca tagctttttt taacgaaaaa gatgaacttt gcgaaggctc aagaaccaat
      421 ctcatcttag aaaaaaacgc tcaattttat actccacaaa ttcaaagtgg tatgttaaat
      481 ggcgtatata gaaatttctt agtcaatctt ggtttgataa aagaaaaagc attatttaaa
      541 caagatttat ttgaagcaga aaatatttat tgtattaatt ccgtgcgtgg tttaaaaaag
      601 gtaaaattac aatgaagaaa attttattta tagataatta tgattctttt agttatacca
//
LOCUS       DARGEM010000260          659 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.260, whole genome shotgun sequence.
ACCESSION   DARGEM010000260 DARGEM010000000
VERSION     DARGEM010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.260"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..466)
                     /gene="cetC"
                     /locus_tag="SFZ78_001875"
     CDS             complement(<1..466)
                     /gene="cetC"
                     /locus_tag="SFZ78_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG8212695.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNE"
BASE COUNT          269 a           95 c           65 g          230 t
ORIGIN      
        1 gttcattata agtcatttta taagaactta caatatccat taaagctgaa actccagcat
       61 taatgcctga tttttgctct ttttcaagta aaattttata aacttcttca attatagaaa
      121 gagattttct attgggtgca cgacgaacag aataataatt gatgatatct ccattagcat
      181 caaatgaagc acttacattt gcaaaaaccc agtaaaaatt accatctttg gatttatttt
      241 tcacaaatgc aaaaatttca tctccttttt gaatataatc ccaaagacat ttaaatacag
      301 tgcgtggcat atcttcatgt cttactatat tatgagattt atataaaagc tcatcgactt
      361 tataacctgc gtattttaaa aagtcattat tggcataaat gatattcccc ttaagatctg
      421 ttttagaagt aattaaagca ttttcagaca aaactatttc tttcataatt taaaacatcc
      481 caataaaaca aataaatcaa aaatagaatt attaccaata ataaataaca aaaagcaaac
      541 tgaattacaa aattataaaa ttttcaaaaa tattttaaat tttataatgc aaataatgag
      601 aaattttgta acgtttatat aaaaaattat catatcatat aaaagaaagt atttctaga
//
LOCUS       DARGEM010000261          637 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.261, whole genome shotgun sequence.
ACCESSION   DARGEM010000261 DARGEM010000000
VERSION     DARGEM010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.261"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            145..>637
                     /locus_tag="SFZ78_001876"
     CDS             145..>637
                     /locus_tag="SFZ78_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212696.1"
                     /translation="MTREQAELIIEEEKLIDTDWYPSYKHSGEYHLTMWFDSDNNKYE
                     AVYIGERGGVELEYSFDSEKEAIDKMLQMNYEQKKYNGKDIKEYLTKEVALRIIKEEN
                     LEVIWYDEALKPLCAGIKHDKQRDKYISFITNAKAKLIEYRSIEFDGDRYSETFKEML
                     NDEF"
BASE COUNT          272 a           58 c          118 g          189 t
ORIGIN      
        1 aaataattgg gatgatataa caggctatat tgaaaaagaa gaagagatgt tgataagcat
       61 atattttgat aatgatttag aatatattac tttaacttgt aagtatttta atatagattt
      121 tatagactaa acaaaggata aaaaatgaca agagaacaag cagaattaat tatagaagaa
      181 gaaaagttga ttgatacaga ttggtatcct tcttataaac attcaggaga ataccatctt
      241 actatgtggt ttgattctga taataataaa tacgaagctg tttatattgg agaaaggggc
      301 ggtgttgaac ttgagtattc ttttgatagt gaaaaagaag ctattgataa aatgttgcag
      361 atgaattatg aacaaaaaaa atacaatgga aaagacatta aagaatatct aacaaaagaa
      421 gtagcactaa gaatcatcaa agaagaaaat ctagaggtga tttggtatga tgaagcactt
      481 aaacctttat gtgcaggtat taaacacgat aaacaaagag ataaatatat atcttttatc
      541 actaatgcta aagcaaagct tatagaatat agaagtattg aatttgatgg ggatagatac
      601 agtgaaacct ttaaggaaat gcttaacgat gaatttc
//
LOCUS       DARGEM010000262          620 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.262, whole genome shotgun sequence.
ACCESSION   DARGEM010000262 DARGEM010000000
VERSION     DARGEM010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.262"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            4..489
                     /locus_tag="SFZ78_001877"
     CDS             4..489
                     /locus_tag="SFZ78_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HEG8212697.1"
                     /translation="MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGE
                     IKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLEN
                     LIKALKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVVKDNFRIEPKIESLEIE
                     K"
BASE COUNT          259 a           70 c          116 g          175 t
ORIGIN      
        1 tagatgcaaa taaataattt agaagatgtt aacttagcac ttaaaaaagt ggcagaactt
       61 agcgtaaaaa tagaaaagat taatggcgag gtgactttag cttgtaatga gattaaagaa
      121 gctcgtgcag gagagattaa ggttttaagt gatgaactta aatatataga gcagtgcatt
      181 acaacctttt gtgaaaataa taaacacgag tttgcagaaa aaagaagcaa agaatttacc
      241 tttggcaaga ttggctatcg cttaagtaaa agtgtatctt taccacgtgt gaaagaaaaa
      301 ctagaaaact taatcaaagc tttaaaaagc tatggactta atgattgcat tacttataaa
      361 gaagaactta ataaagatgc tattgcagag cttgaagata gcaccttagt aaagctagga
      421 cttaaaagag ttgtaaaaga taattttaga atagagccaa agattgaaag cttggagatt
      481 gaaaaatgag agagctttcc ttagcgactt ttaaactttt aaatagtgtt tttaaaacaa
      541 aaacagctca ttttaatggc tttttagaac ttgattttaa aaataagcct aagctaaaaa
      601 agcaaagctt taaaagaaaa
//
LOCUS       DARGEM010000263          603 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.263, whole genome shotgun sequence.
ACCESSION   DARGEM010000263 DARGEM010000000
VERSION     DARGEM010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.263"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>603
                     /locus_tag="SFZ78_001878"
     CDS             <1..>603
                     /locus_tag="SFZ78_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8212698.1"
                     /translation="RTLKIEKINRRFYERIRKAYKENGILGLIDTRGLHRKDKTKLST
                     WMQEYALREYRTFAAGGFNFTELWWQIHKEAAIKENYDFIGFDLGKVKPLFSVKTLQN
                     FIKNYYKDKPLEHCIITQGLDKAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRD
                     DETLEPFRPHILSVVDVFSGMGVATLVSKSNSLSLTRLLW"
BASE COUNT          214 a           96 c          115 g          178 t
ORIGIN      
        1 tcgtacttta aaaatagaaa agattaacag aagattttat gaaagaattc gcaaagcata
       61 taaagaaaat ggcattctag gtcttatcga cactcgcgga cttcaccgca aagataaaac
      121 taaacttagc acttggatgc aagaatacgc tttaagagaa tatcgcacct ttgcagcagg
      181 tggatttaat ttcactgagc tttggtggca aattcacaag gaagcagcca ttaaagaaaa
      241 ttatgatttt ataggttttg atttgggaaa agtaaagcca ctctttagtg taaaaacctt
      301 acaaaatttc attaaaaact attataaaga caagcctttg gagcattgta ttatcacaca
      361 aggtttagat aaagcaaaaa gtaagtttct acctgcacaa ggtaatcaaa gagagcttta
      421 tgacatgaaa aacatgtgtt ggcaaatcga tagctctcca gctgatatta tagtaagaga
      481 cgatgaaacc ttagagcctt tccgccctca catcttaagt gtcgttgatg tctttagtgg
      541 tatgggtgtg gctactttag taagtaaatc aaattcttta agtttgacgc gtcttttatg
      601 gaa
//
LOCUS       DARGEM010000264          602 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.264, whole genome shotgun sequence.
ACCESSION   DARGEM010000264 DARGEM010000000
VERSION     DARGEM010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.264"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..579)
                     /locus_tag="SFZ78_001879"
     CDS             complement(<1..579)
                     /locus_tag="SFZ78_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEG8212699.1"
                     /translation="MTYFLGEVLGEQYEIVFHVITEDGAYIAAIANSHISGRSLDSPL
                     TAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVGILCINHDTSIM
                     RDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSVDSSYLNSDYQL
                     SITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKI"
BASE COUNT          210 a          107 c           58 g          227 t
ORIGIN      
        1 aatttttaaa aattttgcta cgataggaac cgcccctttt atattaaaaa tacctttttc
       61 atatagcttt tcagcaattt cttctttttg agtaatgctt aattgataat cagaatttaa
      121 ataactagaa tctacgcttt gaactaaaat atcctctatc gagtgactta atgtttctat
      181 acttgaatca ttttgagaaa aactaatatt tcctaaaata tcacccatat ctccaatttt
      241 ttctaaatca atcatcttgc atattaaatc tctcataatg ctagtatcat gattgataca
      301 caaaatacct actaatttgt catgattttt aataaaaaaa gtagatcctc taattaattt
      361 tgattttcca acaagagcct tataatcaca taaaaaatct ttttctaaat attttttatt
      421 ttgcataagc tcacttgcaa aagcagtcaa gggagaatct aaacttcttc cactaatgtg
      481 actgttagca attgctgcaa tataggcccc atcttcagta attacatgaa aaactatctc
      541 atattgctca cctaaaactt ctcctaaaaa atatgtcaac tttataaatt gttgtttttg
      601 tc
//
LOCUS       DARGEM010000265          601 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.265, whole genome shotgun sequence.
ACCESSION   DARGEM010000265 DARGEM010000000
VERSION     DARGEM010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.265"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>601
                     /gene="icmH"
                     /locus_tag="SFZ78_001880"
     CDS             <1..>601
                     /gene="icmH"
                     /locus_tag="SFZ78_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HEG8212700.1"
                     /translation="DTSNINQLRETLINKILDITAKLSMCKEYDEKEIIKFKYCLCVF
                     IDESLMKNELFINFWAHNTLTVRLFDETLGGNNFYDIASSWINNPFKFKDFLEFIYAC
                     LILGYKGKYNETKDRDEKIIHFCNNIATSLKPVYKIEEELAFNKAYKTGLKENIWQKF
                     IRLYFKKLIIVVPVLIILGVLSYAIFNLETNNLKVDNNIS"
BASE COUNT          238 a           53 c           89 g          221 t
ORIGIN      
        1 ggatacaagt aatattaatc aacttagaga aacattgatt aataaaattt tagatataac
       61 cgctaaacta agtatgtgta aagaatatga tgaaaaagaa attattaaat tcaaatattg
      121 tctttgtgtc tttatagatg aaagcttaat gaaaaatgaa ctttttatta atttttgggc
      181 tcacaatact ctaactgtaa gattatttga tgaaacctta ggtggaaata atttttatga
      241 tattgcatca tcttggatta ataacccttt taagtttaaa gattttttgg aatttattta
      301 tgcttgtttg attcttggtt ataaaggaaa atataatgag actaaggata gagatgaaaa
      361 aataatccat ttttgcaata atattgccac atctttaaaa ccggtttata agatagaaga
      421 agagttagct tttaataaag catataaaac tggtttgaaa gaaaatattt ggcaaaaatt
      481 tataagattg tattttaaaa aacttattat cgttgtgcca gtattgatta tattaggagt
      541 attaagctat gcaattttca atttagaaac aaataatctt aaagtggata ataatatatc
      601 t
//
LOCUS       DARGEM010000266          569 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.266, whole genome shotgun sequence.
ACCESSION   DARGEM010000266 DARGEM010000000
VERSION     DARGEM010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.266"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            135..338
                     /locus_tag="SFZ78_001881"
     CDS             135..338
                     /locus_tag="SFZ78_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212701.1"
                     /translation="MLLNTPCRGIIDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
BASE COUNT          268 a           67 c           61 g          173 t
ORIGIN      
        1 aaataattga tgcttttaaa agcgaattaa atggataaaa atttatttca ataaatttaa
       61 gttttatctt attttataca atttttaata taatctaaaa ttataatttt aaatgagaaa
      121 tcaggagctt gctaatgtta cttaacacgc cttgcagggg gataatagat acaaattttg
      181 aaagcaaaag aattagcata acttcaactt taaaatttca agaaaaaaaa gaaaaagtag
      241 aagctaaggc tgagaaagaa gaagcaaata aagacaatag caattctaca aacacaaata
      301 ccaataaaaa agataaactt ttggatatat ctgcttagtc taaaatatac tatagctata
      361 tctccttaaa gaatacgcaa taaatgattt tttgattttt attaagcttt taaaacatcg
      421 aaaaaaggaa aaattaaaaa acacaaaaac aatatcccaa agtccatagc ttagaagaag
      481 accttgcgat acttaaaaac aacccatatt aaatcacaaa aataaaatat atttaaatat
      541 ttattaaaat acattttata atttaataa
//
LOCUS       DARGEM010000267          566 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.267, whole genome shotgun sequence.
ACCESSION   DARGEM010000267 DARGEM010000000
VERSION     DARGEM010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.267"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>566
                     /locus_tag="SFZ78_001882"
     CDS             <1..>566
                     /locus_tag="SFZ78_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEG8212702.1"
                     /translation="NKSLKHPNKDIEKIIFSEHEQSVIELFINFMGLHGVSSQLPSFM
                     LDKLSRNEDGDQGWTLFFDFFNHYLLWIFFDVISLKNYPRSFNENFKDSISKILFSML
                     GIKEYDIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLPHQILISNSQ
                     KNNLGIKNNILGNNFILGDKFISYQNKIA"
BASE COUNT          225 a           75 c           69 g          197 t
ORIGIN      
        1 aataaaagtt taaaacatcc aaataaagat atagaaaaaa tcattttttc agaacacgaa
       61 caatcagtta tagaattgtt tataaatttc atggggctac atggagtctc ttcacaactt
      121 ccttcattta tgctagataa actgtcaaga aatgaagatg gcgaccaagg ttggactcta
      181 ttctttgatt tctttaatca ttatttgctt tggatatttt ttgatgtaat aagcttaaaa
      241 aattatccac gatcttttaa tgaaaatttt aaagattcta tttcaaaaat tttatttagc
      301 atgttgggaa ttaaagaata cgatattgca aaaaaatatt taccatttgc acctttacta
      361 ctaagtttaa gacgacctaa aacacacatt gaaagagttt tacaggtcaa ttttaaactt
      421 aaggataaat tatcaattat tgaaaattta ccccatcaaa ttttaatttc aaattcgcaa
      481 aaaaataact taggaataaa gaacaatatt ttaggaaata attttatatt gggcgataaa
      541 tttatctctt atcaaaacaa aatagc
//
LOCUS       DARGEM010000268          542 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.268, whole genome shotgun sequence.
ACCESSION   DARGEM010000268 DARGEM010000000
VERSION     DARGEM010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.268"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..486
                     /locus_tag="SFZ78_001883"
     CDS             <1..486
                     /locus_tag="SFZ78_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG8212703.1"
                     /translation="CKVIKNDTFKKAKELEKFDFTHLIISPGPHSPKESKLSLKAIKY
                     FKKNKKILGICLGHQCIAEVFGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEIEICL
                     YHSLHISFMPKKCKILAHNSENIIMAIKHKKYPIYGLQFHPEAVLTQKGKKILKNFMK
                     L"
BASE COUNT          225 a           67 c           64 g          186 t
ORIGIN      
        1 tgtaaagtga taaaaaatga tacctttaaa aaagccaaag aattagaaaa atttgatttt
       61 actcatctta tcatctctcc tgggcctcat tctcctaagg aatctaaatt aagcttaaaa
      121 gcaatcaaat attttaaaaa aaataaaaaa attttaggta tatgtttagg gcatcagtgt
      181 atagctgaag tttttggcgg tagggtttct aaaatgcaaa atcctatgca tggtaaaatt
      241 tctaaacttt attttaaaaa agatcctatt tttaagggta ttaaaaaaga aattgaaatt
      301 tgtttatatc attctttaca tatcagtttt atgcctaaaa aatgcaaaat tttagctcat
      361 aattcagaaa atatcattat ggcaattaaa cataaaaaat atcccattta tggattacaa
      421 tttcaccctg aagcggtttt aactcaaaaa ggtaaaaaaa tacttaaaaa ctttatgaaa
      481 ctttagtttt tttgcgttta aaatataaat ataaaaatct aaagcaaaat atccttaaaa
      541 ta
//
LOCUS       DARGEM010000269          538 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.269, whole genome shotgun sequence.
ACCESSION   DARGEM010000269 DARGEM010000000
VERSION     DARGEM010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.269"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>538
                     /locus_tag="SFZ78_001884"
     CDS             <1..>538
                     /locus_tag="SFZ78_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8212704.1"
                     /translation="PVKISCYELNIKDEDGDFPLFDPFNLIIRAAHACEDNNNDFSIL
                     DYLFDEYGLSLKDPKYNFVLIDMKHIKEANEKYILIKKAKESNIICRNALIYYYILNA
                     DNPNSQIIKYLVNRGAKFEVHDEGAYGWTPMHFWARRNNYQLLELAIKGGANVDMQTL
                     LDPKSEYNETLLFEAVEEA"
BASE COUNT          198 a           70 c           88 g          182 t
ORIGIN      
        1 atcctgtaaa aatatcttgt tatgagctta atattaaaga tgaggatgga gactttcctt
       61 tatttgatcc ttttaatcta ataataagag ctgcacatgc ttgtgaagat aataataatg
      121 atttttctat tttagactat ttatttgatg agtatggttt aagtttaaaa gatcctaaat
      181 ataattttgt tcttattgac atgaaacaca tcaaagaagc taatgaaaaa tatattttaa
      241 taaaaaaagc aaaagaaagc aacattattt gtcgaaacgc tctaatctat tattatatac
      301 tcaatgctga taatccaaat tctcaaatca ttaagtatct agtcaatcgt ggagctaaat
      361 ttgaagtgca tgatgaaggg gcttatggtt ggactcctat gcatttttgg gctagacgca
      421 ataattatca attattagaa ctagctatta aaggaggagc taatgtagat atgcaaacct
      481 tgcttgatcc aaaaagcgaa tacaatgaaa cccttttatt tgaagctgta gaagaagc
//
LOCUS       DARGEM010000270          537 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.270, whole genome shotgun sequence.
ACCESSION   DARGEM010000270 DARGEM010000000
VERSION     DARGEM010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.270"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>537)
                     /locus_tag="SFZ78_001885"
     CDS             complement(<1..>537)
                     /locus_tag="SFZ78_001885"
                     /inference="COORDINATES: protein motif:HMM:NF020073.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8212705.1"
                     /translation="LLEHIDNPKIFLKDIVEYLDENGMIYLEVPNAHDILRYKRFIDI
                     YHDHCGYYQEATLVNIMNHLGCKLIEKVKYFDEQHIGLFFLKKQIRKYQEPFVFYNNI
                     KDSFDIEIKYINDVLSRYKNIGIYGAGVQGHTLINHLNYKNLLKIVCAFEINRDKVGK
                     YMVNSNILINYPDRKSLEK"
BASE COUNT          199 a           84 c           42 g          212 t
ORIGIN      
        1 tttttctaaa cttttccgat ctggatagtt tattaaaata tttgaattaa ccatatattt
       61 accaacttta tctctattaa tttcgaaagc acaaacaatt ttcaataaat ttttataatt
      121 caaatgattg attaatgtat gcccttgcac accagcgcca taaataccta tattcttata
      181 ccgagataaa acatcattta tatattttat ttcaatatca aaactatctt ttatgttatt
      241 atagaaaaca aatggttctt gatatttcct aatttgtttt tttaaaaaaa ataaacctat
      301 gtgttgttca tcaaaatatt tcactttttc aataagttta caccctaaat gattcataat
      361 atttactaaa gtagcctctt gataataacc acaatgatca tgataaatat caataaatct
      421 tttatatctt aaaatatcat gtgcattcgg aacctccaag taaatcatac cattttcatc
      481 taaatactct acaatatctt ttaaaaaaat tttagggtta tcaatgtgtt ctaataa
//
LOCUS       DARGEM010000271          534 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.271, whole genome shotgun sequence.
ACCESSION   DARGEM010000271 DARGEM010000000
VERSION     DARGEM010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.271"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>534
                     /locus_tag="SFZ78_001886"
     CDS             <1..>534
                     /locus_tag="SFZ78_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212706.1"
                     /translation="WTKEIIEKNNKILSTQFPNLDDAMEFLRKNHLYQKTPEGEICER
                     SYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQLKIFASSEEEKAYIEYFEKL
                     KLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDE
                     NDFDVLKFGNEIKESFE"
BASE COUNT          212 a           45 c          103 g          174 t
ORIGIN      
        1 cttggactaa agaaattata gaaaaaaata ataaaatttt atctactcaa tttccaaatt
       61 tagatgatgc aatggaattt ttacgtaaaa atcatttata tcaaaaaact ccagaaggag
      121 aaatttgtga gcgaagctat ggtgttttag ttagaatagg aaatttatgg aaatttgttc
      181 cttatgcgag atttttcgag aatgaaattt taaaattaga atttgctttt gaaaatatga
      241 ttgatcagct taaaatattt gctagcagcg aagaggaaaa agcttatata gaatattttg
      301 aaaaattaaa attagcgttt tgtgaaaaag atgaagatag ggttataaaa gcttggcaag
      361 aagctgaatt tgcttggatg aaagtaaaat cacctttaca agtgggacat cccttagaat
      421 attatgaaga taattatact catgcggtgg cattagaatg ggatataaga atagaagatg
      481 aaaatgattt tgatgttttg aaatttggta atgaaattaa ggaaagtttt gaac
//
LOCUS       DARGEM010000272          532 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.272, whole genome shotgun sequence.
ACCESSION   DARGEM010000272 DARGEM010000000
VERSION     DARGEM010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.272"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..367
                     /locus_tag="SFZ78_001887"
     CDS             <1..367
                     /locus_tag="SFZ78_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212707.1"
                     /translation="DFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAYKEFENK
                     DLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLDEILEDE
                     DRKQELYVCKFVVVNGVKI"
BASE COUNT          227 a           52 c           76 g          177 t
ORIGIN      
        1 agactttagt aaagattatg aatttaaaga attaaatctt agctttgata ctaatttaat
       61 caaactttat tttattatcc caaaaaacat tgctaaagtt tataaaagtg cttataagga
      121 atttgaaaat aaagatttag gagcagggta ttttacacag ctacatgagt atgataaaat
      181 catcaaaaat gctttagaag ataataaaga attaaacgaa tatcatttta gttttttagc
      241 tcctgcaaaa atgcaaaatt taaaacttca aatcgcacaa ggactagatg aaatcttaga
      301 agatgaagat agaaaacaag agctttatgt ttgtaaattt gtggtggtaa atggggttaa
      361 aatatgaaaa taaaaaattt tactttaatt gcatcaaatc ataatttaga aatcgagtta
      421 aaaaatctta ccaaaaatgc taataaaatt atttttatat gcagtgattt tgatggatat
      481 aaagaagcta agaattcttt gtataagaca ctacatacta ttgaagataa tt
//
LOCUS       DARGEM010000273          532 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.273, whole genome shotgun sequence.
ACCESSION   DARGEM010000273 DARGEM010000000
VERSION     DARGEM010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.273"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            70..>532
                     /locus_tag="SFZ78_001888"
     CDS             70..>532
                     /locus_tag="SFZ78_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG8212708.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKI"
BASE COUNT          204 a           65 c           76 g          187 t
ORIGIN      
        1 tatttcataa aagaaattat aaaatatttt ggcgaatttt gtggtagaat tacattaaaa
       61 aggaaatttg tgcagcttaa tgagctaaat tgcgtgattt tatgtggtgg taaatctagc
      121 cgtatgggac aagataaaag caaattgatt cttaaaaatc aaaatttaac tcaatttcaa
      181 gtagataaat tttctaaaat ttttaaaaat gtctatgtga gtgcgaaaga agacaaattt
      241 gaaaaccatt ttagcttgat aaaagattct ttagaatttg aagtttactc tcctatgctt
      301 gcgctttact ctatactttc aaattttaaa aatgaatttg tttttgtttt aagtgtagat
      361 agtcctaaag taggtgaaaa tgaactttta aaaatgcttc cttttttaga acaaaactat
      421 aaaataatca tagcaaaaac ccctttgcat aaacatccct tatgtggctt ttatcacagc
      481 tctttagctc aaacttgtaa aaatttctta gaaaaaaatg aacaaaaaat ag
//
LOCUS       DARGEM010000274          491 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.274, whole genome shotgun sequence.
ACCESSION   DARGEM010000274 DARGEM010000000
VERSION     DARGEM010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.274"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            38..>491
                     /locus_tag="SFZ78_001889"
     CDS             38..>491
                     /locus_tag="SFZ78_001889"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212709.1"
                     /translation="MYQLGKNISENLNYFKFSERKLIFETNAIFKVLSPSDLISNPCL
                     KAYKDLIYNDKYVEILDKDLISFPKPYIGYKILGVHTFLPTKKGVLSSYQSMCENYFS
                     MVFKNSKKEIVKSFRCYNNFDWLYDDFVIDSDTIVMYNKDNLPITEISY"
BASE COUNT          187 a           67 c           58 g          179 t
ORIGIN      
        1 cgcatcccta gatccctacc atctcctagc tactataatg taccaacttg gaaaaaatat
       61 ttctgaaaac ttaaattatt ttaaattttc agaaaggaaa ttaatttttg agacaaatgc
      121 aatttttaaa gttcttagtc catctgattt aatatctaat ccttgcctta aagcatataa
      181 agatctaatt tacaatgata aatatgttga aattttagat aaagatttaa tttcttttcc
      241 aaaaccatat ataggctata aaattttagg agtacatact tttcttccaa ctaaaaaagg
      301 agtattatct tcttatcaat caatgtgtga aaactacttt agcatggttt ttaaaaattc
      361 aaaaaaagaa atagtaaaaa gttttagatg ttacaacaat tttgattggc tatatgatga
      421 ttttgtaatc gatagtgata ctatcgttat gtataataaa gacaatctgc ctataacaga
      481 aatttcttat g
//
LOCUS       DARGEM010000275          487 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.275, whole genome shotgun sequence.
ACCESSION   DARGEM010000275 DARGEM010000000
VERSION     DARGEM010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.275"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>487
                     /locus_tag="SFZ78_001890"
     CDS             <1..>487
                     /locus_tag="SFZ78_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8212710.1"
                     /translation="SNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESVDSFPI
                     FAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISFFEESEESENTL
                     THIVNAIEAFKKAKHKTGFSPDLIIAPYYSHEAGVKAKLESVASSMNITAIVDLYATN
                     VG"
BASE COUNT          176 a           72 c           93 g          146 t
ORIGIN      
        1 agcaatggtg cagcaagtcc tattaaagtg caaagtgata cgcctatagg tattgctggg
       61 gctataaaag gtgcaagtaa agaaatgatt tacacaaagg ctggttatga aagcgtggat
      121 agctttccaa tctttgcctt ttcaaatgta agcaaagcaa aagaatttgt aaacgattta
      181 atcaaagaaa ataacttaca agattttaga cttttagata ctttagaatg tatcaattta
      241 caaaatgttt ctaatgtcat aattatcagc ttttttgaag aaagcgagga aagtgaaaac
      301 actttaaccc atattgttaa tgccatagaa gcttttaaaa aagcaaagca taaaacaggt
      361 tttagccctg atttaatcat tgctccttat tactcacatg aagcaggagt aaaggctaag
      421 cttgaaagtg tggcaagttc tatgaatatc acagctattg tggatcttta cgctacaaat
      481 gttggcg
//
LOCUS       DARGEM010000276          483 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.276, whole genome shotgun sequence.
ACCESSION   DARGEM010000276 DARGEM010000000
VERSION     DARGEM010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.276"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            120..>483
                     /locus_tag="SFZ78_001891"
     CDS             120..>483
                     /locus_tag="SFZ78_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8212711.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQYHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDS"
BASE COUNT          217 a           54 c           49 g          163 t
ORIGIN      
        1 tatataaatt ataaatactt taataataat aatttttata taattaatta ataaaatttt
       61 aagtattata gcattataat ccgttctcga aaaatataaa tataaaagta ctcaaaacca
      121 tgatttataa tgaaaaaatt atttcaatga ataatgatct tttagatcat caacataaag
      181 aactttttga aatttctaaa aaactctctt taatgaacca atatcatgtt ggaacaaaag
      241 aattaaaaat tgtcttaaga gagttgttga taatgatcaa tagacatttt tcagatgaag
      301 aagcctttat gagaaaaata gaatatcctt atatcaacca tcatacaaga attcacagaa
      361 aaattatctt agaaattgaa gaaattatca tcagtgaagc taaatttgta aatataatga
      421 ccgaaaaatt aaatctcgtt gttcaagatt ttatctttaa acatacagcc aaagaagatt
      481 caa
//
LOCUS       DARGEM010000277          477 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.277, whole genome shotgun sequence.
ACCESSION   DARGEM010000277 DARGEM010000000
VERSION     DARGEM010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.277"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            35..>477
                     /locus_tag="SFZ78_001892"
     CDS             35..>477
                     /locus_tag="SFZ78_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8212712.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPI"
BASE COUNT          188 a           69 c           60 g          160 t
ORIGIN      
        1 tataatttaa aaaatttata tcgaaggaaa tattttgaaa aaaattctat tatttatttt
       61 atctttaggg atattttata ctttcacaca agctaaaaat ttagagcaag aacaaaatac
      121 tagtagcaat ttagttagtg tcagtatagc gcctcaagca ttttttgtta aaaaaatagc
      181 tgcaaatact ctagatgtca atgttatttt gcccccaaat agcaatgagc ataattttga
      241 atttaaacca agtactatga aaaaacttga aaaaagtgat atttatttca ctataggctt
      301 agaatttgaa aaagttttta cggataaatt taaacaaaat ttttcaaaac ttcaagttgt
      361 aaatatgcaa aaaaacatag ctttgattca aactcatgat acacacgaac actctcatga
      421 gcatgaacac cacgaacatg agcattttga tcctcatact tggctagatc ctatttt
//
LOCUS       DARGEM010000278          475 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.278, whole genome shotgun sequence.
ACCESSION   DARGEM010000278 DARGEM010000000
VERSION     DARGEM010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.278"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..327
                     /locus_tag="SFZ78_001893"
     CDS             <1..327
                     /locus_tag="SFZ78_001893"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212713.1"
                     /translation="FDYIGENGKIILNIKQRAMEIKNTLNGGYNSVSIKTKDKLTRYD
                     LDGKPHYEKTSKKIIDTPHKIEYTKHINPQDPTKYRMSQGLVEPISHKDLDIVENYLK
                     RQNNEI"
     gene            317..>475
                     /locus_tag="SFZ78_001894"
     CDS             317..>475
                     /locus_tag="SFZ78_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212714.1"
                     /translation="MKFENLKHGSLFKREFYLKDVKIDLKNDFFVYSIITNEKTLEIF
                     FKSEKKDIQ"
BASE COUNT          220 a           45 c           68 g          142 t
ORIGIN      
        1 tttgattata ttggtgaaaa tgggaagatt attttaaaca ttaaacaaag agccatggaa
       61 ataaaaaata ctttaaatgg aggatataat agtgtttcca taaagacaaa agataaactc
      121 accagatatg atttagatgg taaaccacat tatgagaaga catcaaagaa aataattgat
      181 acacctcata aaatagaata tactaaacat ataaatcctc aagatccaac aaagtataga
      241 atgtcacagg gtttagtaga gccgatatct cataaagatt tagatattgt agaaaattat
      301 ttaaaaaggc aaaataatga aatttgagaa tttaaagcat ggaagtttat ttaaaagaga
      361 attttatctt aaagatgtaa aaatagattt gaaaaatgac ttttttgttt attctatcat
      421 aacaaatgaa aaaactttag aaatattttt taaatcagag aaaaaagata tacaa
//
LOCUS       DARGEM010000279          467 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.279, whole genome shotgun sequence.
ACCESSION   DARGEM010000279 DARGEM010000000
VERSION     DARGEM010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.279"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..399)
                     /locus_tag="SFZ78_001895"
     CDS             complement(<1..399)
                     /locus_tag="SFZ78_001895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212715.1"
                     /translation="MENVSSIFSYFFLKKYYITDYKIQKNHGFKLHSKIRTFDEIKSP
                     PFENEWGWYSTDIPPYYWLKDCKKEEFLCIVRDIYNNKFIFSSDYQQIFDNVNVINEK
                     INNFIALHIRGGDIVYSSLRKHAGRKVLEER"
BASE COUNT          186 a           75 c           42 g          164 t
ORIGIN      
        1 tctttcttct aaaactttgc gaccagcatg ctttctcaaa ctagaatata cgatatctcc
       61 acccctgata tgcaaagcaa taaaattatt aattttttca ttaatcacat taacattatc
      121 aaaaatttgc tgataatcag aagaaaaaat aaatttatta ttataaatat ctcgaactat
      181 acatagaaat tcttcttttt tacaatcttt caaccaataa tacggaggaa tatcagttga
      241 ataccatccc cattcattct caaaaggagg agatttaatt tcatcaaaag ttctaatctt
      301 ggaatgtaac ttaaaaccat gatttttttg tattttataa tcagttatat aatacttctt
      361 gagaaaaaaa taagaaaaaa tagaagaaac attttccata tcattagcaa aataatatat
      421 atcttcagat atttttgttc taatatcaaa cctatccaaa tcaatag
//
LOCUS       DARGEM010000280          465 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.280, whole genome shotgun sequence.
ACCESSION   DARGEM010000280 DARGEM010000000
VERSION     DARGEM010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.280"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            17..157
                     /locus_tag="SFZ78_001896"
     CDS             17..157
                     /locus_tag="SFZ78_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212716.1"
                     /translation="MKNLSIQEKKDLDNCVFQNLGRQDTFTLSVVFKNFYLKIKAFIY
                     SK"
     gene            complement(145..>465)
                     /locus_tag="SFZ78_001897"
     CDS             complement(145..>465)
                     /locus_tag="SFZ78_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212717.1"
                     /translation="QNLKNTMQDIMIYYKLRYSFSKDVKDMSKNKNLDILNIDEKDGG
                     TLLYKINNQACVGIELTRHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKDFKW
                     YYLE"
BASE COUNT          159 a           63 c           56 g          187 t
ORIGIN      
        1 tttaaaggct aggttaatga aaaatttaag cattcaagaa aaaaaagact tagacaactg
       61 cgtttttcaa aatcttggaa ggcaagatac ttttacttta agtgtggttt ttaaaaattt
      121 ttatttaaaa attaaagcat ttatttattc taaataatac cacttaaaat ccttttttgt
      181 ataggaaaga tctttaaaag aaggtgattg gataaatagt ttgcactctt tatccaaatt
      241 ttctatcccg tatattttca tagccattct tgagtcatgt cttgtaagtt ctattccaac
      301 acaagcttga ttgttgattt tgtaaagtaa agtgccacca tctttttcat ctatatttaa
      361 aatatccaaa ttcttatttt tactcatatc ttttacatct ttactaaaag aatatcggag
      421 tttataatat atcataatat cctgcatggt atttttcaaa ttttg
//
LOCUS       DARGEM010000281          438 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.281, whole genome shotgun sequence.
ACCESSION   DARGEM010000281 DARGEM010000000
VERSION     DARGEM010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.281"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>438)
                     /locus_tag="SFZ78_001898"
     CDS             complement(<1..>438)
                     /locus_tag="SFZ78_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEG8212718.1"
                     /translation="DKIPIFIQNVILYELFWQVQELVNHPEKLSFIDQAKIHKYLDLL
                     DQICYFIDSENIIKFNFNSFLFLHKMGFLHCFKKEKVLIDKVFIEQIDDKNDEILIKF
                     YTADVNDEIKMLFDDRLAKIICSKIRQYDFLNRVFIYERRIWL"
BASE COUNT          169 a           61 c           42 g          166 t
ORIGIN      
        1 ttaagccaaa ttcttctttc atagataaaa actcggttta aaaaatcata ctgtctgatt
       61 tttgaacaaa tgattttggc taatctatcg tcaaaaagca ttttaatttc atcgttaaca
      121 tctgccgtat aaaatttaat taaaatttca tcatttttat catctatttg ctcgataaaa
      181 actttgtcta taagcacttt ttctttttta aaacaatgca aaaatcccat tttgtgtaaa
      241 aacaaaaaag aattaaaatt aaattttatt atattttcac tatcaataaa ataacaaatt
      301 tgatcgagta aatcaagata tttatgaatt ttagcttgat ctataaaaga caatttttca
      361 ggatgattaa ccagttcttg cacctgccaa aatagttcat acaaaataac attttgtatg
      421 aaaataggaa ttttatct
//
LOCUS       DARGEM010000282          435 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.282, whole genome shotgun sequence.
ACCESSION   DARGEM010000282 DARGEM010000000
VERSION     DARGEM010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.282"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>435
                     /locus_tag="SFZ78_001899"
     CDS             <1..>435
                     /locus_tag="SFZ78_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212719.1"
                     /translation="LKKSKSFSRLDKAKQIHLISKVKKQLAIDFSIKMSKDLSVDILK
                     SLAGSFIDTLLPTNYERLKILYEKLMYEKFTYNYDFPLAVKKEEYITYPLLINSRFMS
                     FDLSEFIFGSLLCTGGLNYYPSIACATTSSEAREFALKRLLSY"
BASE COUNT          158 a           46 c           65 g          166 t
ORIGIN      
        1 ttaaaaaagt caaagagttt ttcaagattg gataaagcta agcaaattca tttgatatca
       61 aaagtaaaaa aacaattagc tattgatttt tctattaaaa tgagtaaaga cttgagcgtg
      121 gatatattaa aaagtttagc aggatctttt attgatacac ttttgcctac aaattatgaa
      181 agattgaaaa ttttatatga aaaactaatg tatgaaaaat ttacttacaa ttatgatttt
      241 cctttagctg taaaaaaaga agaatatata acctatcctt tattgataaa ttctagattt
      301 atgagttttg atttatctga gtttattttt ggttctttat tatgcacggg tgggcttaat
      361 tattatccta gtattgcttg tgctacaact tcaagtgaag ctagggaatt tgccttaaaa
      421 agacttttat cttat
//
LOCUS       DARGEM010000283          422 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.283, whole genome shotgun sequence.
ACCESSION   DARGEM010000283 DARGEM010000000
VERSION     DARGEM010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.283"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>422
                     /locus_tag="SFZ78_001900"
     CDS             <1..>422
                     /locus_tag="SFZ78_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212720.1"
                     /translation="KIQLTLDTLFNTLLKNITQSNDDEYKQIIRAIAKFFINILDSVT
                     NLKKPVSLVKKNPYVFVVNTLFEAYNSSAEYQEYKEQKYYYDFAYPLLELITSKLYPI
                     IALCNEEILSDVLIIDDKVLLDFSSYSNVPSISLYKNS"
BASE COUNT          151 a           55 c           46 g          170 t
ORIGIN      
        1 aagatacaac ttaccctaga tacacttttt aatacacttt taaaaaatat tactcaatct
       61 aatgatgatg aatataagca aattattaga gctatagcaa aattttttat caatatatta
      121 gattctgtaa ccaatcttaa aaaacctgtc tctttagtca aaaaaaatcc ttatgttttt
      181 gttgtaaata cattatttga agcttataat tcttctgctg agtatcaaga gtataaggaa
      241 caaaaatatt attatgattt tgcttatcca cttttagagc ttattactag taagctttat
      301 cctattatcg ctttgtgcaa tgaagaaatt ttatccgatg tattgattat agatgataaa
      361 gtattattag atttttcatc ttattctaat gtaccttcta ttagtcttta taaaaatagt
      421 tt
//
LOCUS       DARGEM010000284          422 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.284, whole genome shotgun sequence.
ACCESSION   DARGEM010000284 DARGEM010000000
VERSION     DARGEM010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.284"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..346)
                     /locus_tag="SFZ78_001901"
     CDS             complement(<1..346)
                     /locus_tag="SFZ78_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEG8212721.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEKRILIRA
                     MSLEELESLELKG"
BASE COUNT          138 a           78 c           39 g          167 t
ORIGIN      
        1 accctttaag ctctaagctt tcaagctctt ctaaactcat tgctctaatt aaaatccttt
       61 tttctgattg aattaaagaa aaatcttgca atttctctaa agcttcttta tactctaaat
      121 accccaaagg ctcatctttg ctaatgctaa aaaaactcag cctccatttg gtttctttat
      181 cttcatcatc taattcaaaa ttttcccaag gttttttaaa aagaatagta tctgtatctt
      241 cacttagggt gaaatttatt attaacccat ctggtgtttc ataaagttta ggcatagctt
      301 cataagcttc ttcccaacgc ctttgtaaaa gttttaaatc ttccataaat ttttccttaa
      361 atataaaatg aaattataac taaaaatctt tttatattaa attgcaaaat tttttatagc
      421 tt
//
LOCUS       DARGEM010000285          409 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.285, whole genome shotgun sequence.
ACCESSION   DARGEM010000285 DARGEM010000000
VERSION     DARGEM010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.285"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            21..>409
                     /locus_tag="SFZ78_001902"
     CDS             21..>409
                     /locus_tag="SFZ78_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212722.1"
                     /translation="MDRELFITRLAFINNDEIDTIDKNSSIAYLKALYQCENSIAINY
                     NQEELFTQATAINNLGYNSTFTKIFILDKEKLNDTYLDARKRLYKSINTLKEKRNEKI
                     KDIQDYLNKEISLQDNLNNQSFNTKEN"
BASE COUNT          189 a           59 c           44 g          117 t
ORIGIN      
        1 tcttaaatat ttagaaaaaa atggatagag aattatttat aacaaggctt gcttttataa
       61 acaatgatga aatagacaca atagataaaa attcatccat agcatactta aaagccttat
      121 atcaatgtga aaattccata gctataaatt ataatcaaga agagcttttc acccaagcta
      181 ccgctataaa caatctaggc tataattcta ctttcacaaa aatcttcatc ctagataaag
      241 aaaagctcaa tgatacctat cttgatgcta gaaaaaggct ttataaatct atcaatactt
      301 taaaagaaaa aagaaatgaa aaaataaaag atatccaaga ctatttaaat aaagaaattt
      361 ccttacaaga taatctaaat aatcaaagct ttaatactaa ggaaaatga
//
LOCUS       DARGEM010000286          405 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.286, whole genome shotgun sequence.
ACCESSION   DARGEM010000286 DARGEM010000000
VERSION     DARGEM010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.286"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..370)
                     /locus_tag="SFZ78_001903"
     CDS             complement(<1..370)
                     /locus_tag="SFZ78_001903"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212723.1"
                     /translation="MSHALKIYTPGIQAQKSAFSQCAMMIAGRKNIISYHEIFSLKQQ
                     YQIIKSNLGLLGLDSLYDSMAYFQLYKLSRILNLTLDLSLNYIKKAMELDQDNDAWGI
                     HYIYCCFLLGDLEAIETFLKV"
BASE COUNT          153 a           63 c           52 g          137 t
ORIGIN      
        1 atactttcaa aaaagtttct atagcttcaa gatcgccaag taaaaaacaa caatatatgt
       61 aatgaatacc ccaagcatca ttatcctgat ctaactccat agctttttta atatagttca
      121 gagataagtc aagtgttaaa tttaaaattc tagaaagctt atataattga aaataagcca
      181 tagaatcata taaactatct aaacctaata gtcctaaatt acttttaatt atttgatact
      241 gttgcttcaa ggaaaatatt tcgtggtaag aaataatatt tttcctgcct gcaatcatca
      301 ttgcgcattg agagaatgct gatttttgag cctgaatacc tggtgtataa atctttaatg
      361 catgagacat caaattcatt tcaaagaatg ttcgttcaaa aatat
//
LOCUS       DARGEM010000287          403 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.287, whole genome shotgun sequence.
ACCESSION   DARGEM010000287 DARGEM010000000
VERSION     DARGEM010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.287"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..185
                     /locus_tag="SFZ78_001904"
     CDS             <1..185
                     /locus_tag="SFZ78_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212724.1"
                     /translation="LIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIADLKETTQKN
                     RSLIEKNRSNIENIIK"
     gene            complement(188..>403)
                     /locus_tag="SFZ78_001905"
     CDS             complement(188..>403)
                     /locus_tag="SFZ78_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212725.1"
                     /translation="NLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPFLKSMIYKN
                     KSENSSEKIFTLMINQKKHYKLIANLS"
BASE COUNT          163 a           53 c           44 g          143 t
ORIGIN      
        1 ttttgattat tatattttta tttgtagtct ttatcatcgt tactcgctat gaaaaaaaga
       61 taaaattact caaccaaaac atacaaaata tgaaagaaga tatagccgat cttaaagaaa
      121 caactcaaaa aaatcgctct ttaattgaaa aaaatcgctc taatatagaa aatataataa
      181 aataaaacta agaaagattt gcgataagct tatagtgttt tttctgattt atcattaaag
      241 taaaaatttt ttcacttgaa ttttcgcttt tatttttata aatcatactt tttaaaaacg
      301 gaaaaagcat cgtactagaa gttttacctt gtaaaataat atgcatagag ccttttaaaa
      361 ttccgtactt atagctcata ccgcttggaa atatatcaag att
//
LOCUS       DARGEM010000288          397 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.288, whole genome shotgun sequence.
ACCESSION   DARGEM010000288 DARGEM010000000
VERSION     DARGEM010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.288"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            171..>397
                     /locus_tag="SFZ78_001906"
     CDS             171..>397
                     /locus_tag="SFZ78_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8212726.1"
                     /translation="MSYFLETKEAAQTFNVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDELLTAFNQELISKNTLIYD"
BASE COUNT          155 a           55 c           70 g          117 t
ORIGIN      
        1 ggtatcaatc ttaaaaaatt tgctcaaaaa cataatcttc actatatgag tttatttcgt
       61 gtagttaatg gactttattc tgaaaaatac aaagcaaaaa ctaacacaaa agctgtttat
      121 gagaagcttt ttgagcttaa aatcattgat gaaatgccta gggcttgttc atgagttact
      181 tcttagaaac caaagaagcc gcacaaactt ttaatgtaag cacaggagct ttgaggcttg
      241 cagtaagtag aaactcaaat aaatatgagt ggttaaaagt ggataacgaa aaaggtggac
      301 gcggtggtaa aaaactacta tttaaaatca gtaaagatga gcttttaacc gcctttaacc
      361 aagaattaat cagtaaaaat actttaattt atgatga
//
LOCUS       DARGEM010000289          382 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.289, whole genome shotgun sequence.
ACCESSION   DARGEM010000289 DARGEM010000000
VERSION     DARGEM010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.289"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
BASE COUNT          140 a           33 c           51 g          158 t
ORIGIN      
        1 attataaatt actttttcaa gttgtttatt tcgtttcatt tttaattgtt tggcttatgc
       61 ttaaaggaca aaaaaatgta aaaatatgtt agaatgatga aaaaatacta ttttacgtag
      121 atgtttatta ggatatattc gtatgtctta aagctcttta tggggtgtta agtaattata
      181 atatttaaaa attaaaaaat atatagttta tccacatctt ctaaaaattt gatcatctct
      241 tttttcattt tttagagcta gaaaacatat gagtgaaatt gctttaaagt tagttagagc
      301 agttgatact aaatattttg ataagaaatt taaatagatt gattttactt aaattaaaga
      361 ctttttgcct cgtgatacaa aa
//
LOCUS       DARGEM010000290          376 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.290, whole genome shotgun sequence.
ACCESSION   DARGEM010000290 DARGEM010000000
VERSION     DARGEM010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.290"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>376
                     /locus_tag="SFZ78_001907"
     CDS             <1..>376
                     /locus_tag="SFZ78_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HEG8212727.1"
                     /translation="LLTFSEACEFLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRAIV
                     KISYEEFLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKIKCVQNIDNIKELFIY
                     DLSGNFLCLALDESIAKLSKES"
BASE COUNT          132 a           49 c           78 g          117 t
ORIGIN      
        1 tacttcttac ctttagcgaa gcttgtgagt ttttagaagc tgaagtgatc aagtggaaca
       61 tgagtaaagt tcgccgcaaa aaaggcgtta aaactccact tgagctttgg aactcgtgcg
      121 atagagctat tgtaaaaata tcttatgaag aatttttgtt taatgctgga aataaagaac
      181 ttagggtcgt gggcaaaaaa ggcattaact ttgaaagtag agtttataaa agtgctttaa
      241 tgccaagtgt tggcacaaaa attaaatgtg tgcaaaatat cgataatatt aaagaacttt
      301 tcatttatga tttaagcgga aactttcttt gtctagctct tgatgaaagt atagctaagc
      361 ttagcaaaga aagcta
//
LOCUS       DARGEM010000291          374 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.291, whole genome shotgun sequence.
ACCESSION   DARGEM010000291 DARGEM010000000
VERSION     DARGEM010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.291"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..175
                     /locus_tag="SFZ78_001908"
     CDS             <1..175
                     /locus_tag="SFZ78_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212728.1"
                     /translation="VVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKKHEA
                     KTHKKTKEQTTAQ"
BASE COUNT          155 a           67 c           54 g           98 t
ORIGIN      
        1 agttgtacta atctcagcat tactaggtgc tttcgcagct aatgtttttg cagctaatac
       61 tccaagcgat gtgaatcaaa cacatacaaa agctcatcat tcaaaagcta aagctgataa
      121 aaaacatgaa gctaaaactc acaaaaaaac aaaagagcaa acaacagctc aataatgccc
      181 agccttgata taagtctata atagacttat atcaaaagct attcgtattc tacaaaataa
      241 attattaata tttattaaat ttcaatagaa aaaatgaaaa aattgttatt ttaaaagaaa
      301 aattaaaaag tggtgaccca tacgagactc gaactcgtgt taccgccgtg aaagggcgat
      361 gtcctaaccg ctag
//
LOCUS       DARGEM010000292          369 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.292, whole genome shotgun sequence.
ACCESSION   DARGEM010000292 DARGEM010000000
VERSION     DARGEM010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.292"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..210
                     /locus_tag="SFZ78_001909"
     CDS             <1..210
                     /locus_tag="SFZ78_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEG8212729.1"
                     /translation="EVVMNVYEFAFYNLGFNASHFDVRKDNDRVVAFHKKFGAKIIKE
                     DVDNFYFNISKQEYEIAKEKYKKYL"
BASE COUNT          160 a           32 c           44 g          133 t
ORIGIN      
        1 gaggttgtta tgaatgtgta tgaattcgca ttttataatt taggttttaa tgctagtcat
       61 tttgatgtaa gaaaagataa cgatagagtt gtagcctttc ataaaaaatt tggtgctaaa
      121 attattaaag aagatgttga taatttttat tttaacattt caaaacaaga atatgaaatt
      181 gcaaaagaaa aatataagaa atatctataa atagtctaaa atattattaa aatcattttt
      241 caaaaaaaga tataaacctt gatcatagaa attaatttta aaaaacaagt tttgaaacac
      301 ataattaaat tcgagcattt atttttcaag aatatcaact tcccattatc aataatagta
      361 aaattatta
//
LOCUS       DARGEM010000293          350 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.295, whole genome shotgun sequence.
ACCESSION   DARGEM010000293 DARGEM010000000
VERSION     DARGEM010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.295"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>350)
                     /locus_tag="SFZ78_001910"
     CDS             complement(<1..>350)
                     /locus_tag="SFZ78_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8212730.1"
                     /translation="FAFHDMKHIKEANDKYILMKEVEDDPCIYQNALIYDYILSADNP
                     NSQIIKYLVNRGAKFEVHDEDTNWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLR
                     KCNNETLLFEAVSEP"
BASE COUNT          111 a           59 c           47 g          133 t
ORIGIN      
        1 ggttcgctta cagcttcaaa taaaagggtt tcattgttgc attttcttaa tttactaaaa
       61 gtttgcatat ctacattagc tcctccttta atagctagtt ctaataattc ataattattg
      121 cgtctagccc aaaaatgcat aggggtccaa tttgtatctt catcatgcac ttcaaattta
      181 gccccacgat tgactagata cttaatgatt tgagaatttg gattatcagc acttaatata
      241 taatcataga ttagagcgtt ttgataaata caaggatcat cttctacttc tttcattaaa
      301 atatatttat cattagcttc tttgatgtgt ttcatatcat gaaaagcaaa
//
LOCUS       DARGEM010000294          348 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.296, whole genome shotgun sequence.
ACCESSION   DARGEM010000294 DARGEM010000000
VERSION     DARGEM010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.296"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>348)
                     /locus_tag="SFZ78_001911"
     CDS             complement(<1..>348)
                     /locus_tag="SFZ78_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212731.1"
                     /translation="KAIVFIVGGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCA
                     RQSIDQKYNPKLIPNQDDLERVNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQA
                     GLVDESQKIELSC"
BASE COUNT          128 a           62 c           34 g          124 t
ORIGIN      
        1 cacaagaaag ttctattttt tggctttcat caaccaaacc tgcttgtttc attttattaa
       61 ctttttgctc tataagagga ataatttgtt caaaattatc tttattaacc gataaatgtc
      121 ctaaattaat attttttaaa atgccattta cacgctctaa atcatcttga ttgggaataa
      181 gctttggatt atacttttga tcaatacttt gtcttgcaca aaaacaatga taaaaaacat
      241 gtaccactac aacatcaaaa tttttagcaa tatattccct atcaaaatct aaaaaagaaa
      301 tatttgcatt agctccaaaa ccacccacta taaaaactat ggctttga
//
LOCUS       DARGEM010000295          345 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.297, whole genome shotgun sequence.
ACCESSION   DARGEM010000295 DARGEM010000000
VERSION     DARGEM010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.297"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(73..>345)
                     /locus_tag="SFZ78_001912"
     CDS             complement(73..>345)
                     /locus_tag="SFZ78_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglucosamine hydrolase like protein"
                     /protein_id="HEG8212732.1"
                     /translation="KEGFYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKRPLSVQAE
                     IKWRNKLFGTYNLSPIIILENILPSRYEVIAKSEIYHDNQEVLVKI"
BASE COUNT          133 a           49 c           26 g          137 t
ORIGIN      
        1 attaaaaatt ttattatata aaaaaatcat taaaaattat attaacaaaa aaagtttttc
       61 ttaataaatt tcttaaattt ttacaagcac ctcttgatta tcatgataaa tttcactttt
      121 tgctatcact tcatatcttg aaggtaaaat attttcgagg atgataatag gactaagatt
      181 ataagttcca aacaatttat tacgccattt aatttctgct tgaacactta aaggtctttt
      241 taaaaaatct tcaaaatttt tccatttgtt tttaaaaaat gcattaaaac gccaaaattc
      301 cactaaaact atttcatctt tagtacttct ataaaagcct tcttt
//
LOCUS       DARGEM010000296          344 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.298, whole genome shotgun sequence.
ACCESSION   DARGEM010000296 DARGEM010000000
VERSION     DARGEM010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.298"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..309)
                     /locus_tag="SFZ78_001913"
     CDS             complement(<1..309)
                     /locus_tag="SFZ78_001913"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212733.1"
                     /translation="MSKAYAIYSPKVSAFSRAAMMISGKDILIAYEDIFNVQERFDII
                     QRNLFSLGLNDLQIARSLFYQYTLSLKLKMPLNICLEILKKALYFDRDNDAYRIYIID
                     N"
BASE COUNT          136 a           51 c           39 g          118 t
ORIGIN      
        1 gttatctatt atatagatcc tataagcatc attatctcta tcaaaataaa gtgctttttt
       61 caaaatttcc aagcatatat ttaaaggcat tttcaatttt aaagataaag tatattgata
      121 aaagagagat ctagctattt gcaaatcatt taatcccaaa gaaaataaat tcctttgaat
      181 tatatcaaat cgttcttgta cgttaaatat atcttcatac gcaatcaata tatctttccc
      241 agaaatcatc atagcagctc tagaaaaggc tgatacttta ggagaataaa tagcataagc
      301 tttagacatt aaatttatct caaaaaaaac tctttgaagt gaag
//
LOCUS       DARGEM010000297          343 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.299, whole genome shotgun sequence.
ACCESSION   DARGEM010000297 DARGEM010000000
VERSION     DARGEM010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.299"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..272)
                     /locus_tag="SFZ78_001914"
     CDS             complement(<1..272)
                     /locus_tag="SFZ78_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8212734.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTKYNKYPVLFFYGFGNGMFYKTLC"
BASE COUNT          118 a           55 c           36 g          134 t
ORIGIN      
        1 ttacataaag ttttataaaa cattccattt ccaaagccat aaaaaaacaa aacaggatat
       61 ttgttatatt tggttttaaa cagagtaagg ttttctaaaa gctctttatt gggattttca
      121 taaagaaaaa tatcatcttt tttaaaattt attccatttt catcttggat aagtgcaaaa
      181 gttaagtatt taagtgatct cagtgtacaa gctaaaaact catcgacctc aaacaaagct
      241 tgagtatttt ttaaaaaaag ctcttctctc accttctcac cctttccatc catttatcta
      301 attttctttc tttaagtttt tcttctaaag gaagtatatt ttt
//
LOCUS       DARGEM010000298          342 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.300, whole genome shotgun sequence.
ACCESSION   DARGEM010000298 DARGEM010000000
VERSION     DARGEM010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.300"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>342
                     /locus_tag="SFZ78_001915"
     CDS             <1..>342
                     /locus_tag="SFZ78_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212735.1"
                     /translation="FLYTISKTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKW
                     KELERNYDENDLEEQARKYGISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSL
                     VEDLKIQGFIQ"
BASE COUNT          136 a           32 c           62 g          112 t
ORIGIN      
        1 attttttata tactatatct aaaactttgc aaataagtaa ggataaaaag ataagagatt
       61 tggctaaggt gacttcgatt agaatttcta aaactatgga tagtgaaagt atttacttgc
      121 ttactaaaaa atggaaagag cttgaaagaa attacgatga aaatgactta gaagaacaag
      181 ctcgcaaata tggtattagt aaatatgatg attatgatag cgtgattaaa aaactcttag
      241 ttaaacttga agagcgtagt tatgagcact ttagtgaatt attatgcttg ggtttaaatc
      301 cttcattggt agaagattta aaaattcaag gttttataca aa
//
LOCUS       DARGEM010000299          340 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.301, whole genome shotgun sequence.
ACCESSION   DARGEM010000299 DARGEM010000000
VERSION     DARGEM010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.301"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>340
                     /locus_tag="SFZ78_001916"
     CDS             <1..>340
                     /locus_tag="SFZ78_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG8212736.1"
                     /translation="GALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTIFNNTNKD
                     IALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHIMLLKLKK
                     PIIKDTKVNLD"
BASE COUNT          132 a           50 c           53 g          105 t
ORIGIN      
        1 ggtgctcttt ttgctgtaaa tctttgggct gttaatgata tagaggtaaa aaatgccttt
       61 gtaaaacaaa ctccacctca tgcgcaaaat agtgctattt ttcttactat ttttaataat
      121 actaataagg atattgctct aataagtgcc aaaagcgata tcagtgaagt cagtgaactg
      181 catacacata tacataaaga tggaaaaatg atgatgcaaa aaattcctga aattattata
      241 aaagctcatt caagcacaga gcttaaatct ggaggttacc atataatgct tttaaaacta
      301 aaaaaaccta ttattaaaga cacgaaggta aatttagatt
//
LOCUS       DARGEM010000300          327 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.302, whole genome shotgun sequence.
ACCESSION   DARGEM010000300 DARGEM010000000
VERSION     DARGEM010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.302"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>327
                     /locus_tag="SFZ78_001917"
     CDS             <1..>327
                     /locus_tag="SFZ78_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8212737.1"
                     /translation="GNSYGGYLANLCAKIAPWSIDFILDNSSFVNLFGNIFRLIGFGK
                     EIDFTRYHGTYDDTLFKNIFLYLSDKTYWNNNKFSKNYFSNARKIIREPLNKEHLIIQ
                     SLYPNP"
BASE COUNT          131 a           32 c           41 g          123 t
ORIGIN      
        1 ttggaaattc atatggcgga tatttagcaa atttatgtgc aaaaatagct ccttggagta
       61 ttgattttat attagataat tcttcttttg ttaatttgtt tggaaatatt tttagactta
      121 taggttttgg aaaagaaatc gattttacta gatatcatgg aacatatgat gatactttat
      181 ttaaaaatat atttttatat ttaagtgata aaacttattg gaataataat aaattttcaa
      241 aaaattattt ttcaaatgct agaaaaatca taagagaacc attaaacaaa gaacatctaa
      301 taatacaaag cttataccca aatccaa
//
LOCUS       DARGEM010000301          314 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.303, whole genome shotgun sequence.
ACCESSION   DARGEM010000301 DARGEM010000000
VERSION     DARGEM010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.303"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            156..>314
                     /locus_tag="SFZ78_001918"
     CDS             156..>314
                     /locus_tag="SFZ78_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212738.1"
                     /translation="MREENNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNL
                     DINIIKKRN"
BASE COUNT          147 a           27 c           53 g           87 t
ORIGIN      
        1 aaaagtattc tttggataaa agaacattta gaatttatgg aattagttta tggacatatt
       61 aaagcacaag aaaatgcttt gattaaaaat atacttcctt tagaagaaaa acttaaagaa
      121 agaaaattag ataaatggat ggaaagggtg agaaggtgag agaagaaaat aattttaaca
      181 aaaatttaaa agctttaagc ggttttgagt ataacaactt acgcaaaaaa cttgaggatc
      241 taaaagagct tagagaattt actttcactc aaggaaaaga taatcttgat atcaatatca
      301 taaaaaaaag aaat
//
LOCUS       DARGEM010000302          290 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.304, whole genome shotgun sequence.
ACCESSION   DARGEM010000302 DARGEM010000000
VERSION     DARGEM010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.304"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..164
                     /locus_tag="SFZ78_001919"
     CDS             <1..164
                     /locus_tag="SFZ78_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212739.1"
                     /translation="YLEFDEIWGFYENNTRYFTILTPMGANKIKLRLENTQNSEKELN
                     IIEVNLDKK"
BASE COUNT          133 a           31 c           31 g           95 t
ORIGIN      
        1 attatttgga atttgatgaa atttggggtt tttatgaaaa taatactaga tattttacta
       61 ttttaactcc catgggtgca aataaaataa aattgcgttt agaaaataca caaaacagcg
      121 aaaaagaact caatatcata gaagtaaatt tagataaaaa atagatttta ataacaaaaa
      181 taagcaattt ctttttctac tcaaatttag actatttgtg ttaaaataat aaatataaaa
      241 attaaaaaca tagtggattt ataccaaatt ataaacacca taaactcaac
//
LOCUS       DARGEM010000303          287 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S26
            SAMN11268313-rid18062153.denovo.305, whole genome shotgun sequence.
ACCESSION   DARGEM010000303 DARGEM010000000
VERSION     DARGEM010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268313
            Sequence Read Archive: SRR8796659
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741603.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741603.1
            Genome Coverage       :: 72x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:09:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,920
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 53 of 66
            Pseudo Genes (incomplete)         :: 11 of 66
            Pseudo Genes (internal stop)      :: 15 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268313-rid18062153.denovo.305"
                     /isolate="MattSeq37A_S26"
                     /isolation_source="Chicken Ileum"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            60..>287
                     /locus_tag="SFZ78_001920"
     CDS             60..>287
                     /locus_tag="SFZ78_001920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8212740.1"
                     /translation="MRLSSMLIGMYLAEKLGFNFGFVWDNITETQDESILGVNEKFIG
                     INLEKKENIFNFNFIKKYSLDDFNIKKNHGFK"
BASE COUNT          114 a           22 c           48 g          103 t
ORIGIN      
        1 ttacattaca acttggagaa aagccttata ttatatctgc aaaaccagat ggatttggaa
       61 tgagattatc gagcatgctt ataggtatgt atttggctga aaaactagga tttaattttg
      121 gttttgtatg ggataatatc actgaaactc aagatgaaag tattcttggt gttaatgaaa
      181 aatttattgg aataaattta gaaaaaaaag agaatatttt taattttaac tttataaaaa
      241 aatatagttt agatgacttt aatattaaaa aaaatcatgg ttttaag
//
